AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91022

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91022.t1 MTR_4g015410 71.537 397 85 3 74 468 1 371 0.0 559
MS.gene91022.t1 MTR_1g040690 61.006 477 166 11 3 466 2 471 0.0 545
MS.gene91022.t1 MTR_4g015450 80.576 278 53 1 192 468 195 472 1.68e-162 468
MS.gene91022.t1 MTR_4g015290 65.909 264 49 2 1 264 1 223 5.91e-114 335
MS.gene91022.t1 MTR_1g038270 40.467 514 222 17 10 458 3 497 1.06e-97 303
MS.gene91022.t1 MTR_7g068160 31.876 549 247 18 9 466 17 529 5.27e-63 213
MS.gene91022.t1 MTR_7g067970 30.341 557 253 17 9 466 10 530 7.14e-55 192
MS.gene91022.t1 MTR_7g067940 29.768 561 257 18 9 465 10 537 1.56e-54 191
MS.gene91022.t1 MTR_0067s0010 31.313 495 258 18 9 466 24 473 6.61e-53 185
MS.gene91022.t1 MTR_7g068070 28.877 561 257 16 9 463 10 534 6.97e-51 181
MS.gene91022.t1 MTR_7g067600 31.291 457 226 11 9 386 8 455 1.54e-50 180
MS.gene91022.t1 MTR_7g067300 30.739 501 238 19 26 466 20 471 4.44e-50 177
MS.gene91022.t1 MTR_7g067750 30.019 533 263 16 9 466 44 541 7.19e-49 176
MS.gene91022.t1 MTR_3g466740 31.206 423 237 13 8 395 10 413 3.67e-47 169
MS.gene91022.t1 MTR_7g067880 28.281 541 258 22 10 460 11 511 8.27e-44 161
MS.gene91022.t1 MTR_5g086340 27.311 476 260 19 18 468 19 433 1.73e-31 126
MS.gene91022.t1 MTR_6g010890 25.053 475 279 14 13 468 10 426 1.29e-30 123
MS.gene91022.t1 MTR_3g079390 24.540 489 269 12 10 463 22 445 1.26e-29 120
MS.gene91022.t1 MTR_6g011060 25.000 472 266 16 13 463 10 414 1.24e-26 112
MS.gene91022.t1 MTR_6g010810 26.526 475 257 17 8 463 2 403 5.89e-26 109
MS.gene91022.t1 MTR_6g009590 25.935 401 245 13 8 395 5 366 1.78e-25 108
MS.gene91022.t1 MTR_6g010920 24.197 467 276 14 13 468 10 409 4.35e-25 107
MS.gene91022.t1 MTR_2g041180 28.084 381 214 11 28 385 50 393 5.05e-23 102
MS.gene91022.t1 MTR_8g006525 27.020 396 235 13 28 397 28 395 6.14e-23 101
MS.gene91022.t1 MTR_7g067990 27.273 363 173 10 174 466 248 589 1.63e-22 100
MS.gene91022.t1 MTR_7g067990 39.437 142 76 3 8 148 4 136 8.67e-20 92.8
MS.gene91022.t1 MTR_3g107590 27.204 397 241 14 28 408 26 390 1.85e-22 99.8
MS.gene91022.t1 MTR_0209s0060 26.714 423 236 12 28 414 29 413 2.10e-21 96.7
MS.gene91022.t1 MTR_0209s0030 26.714 423 236 12 28 414 29 413 2.10e-21 96.7
MS.gene91022.t1 MTR_8g005285 25.843 445 247 14 17 396 25 451 2.39e-21 97.1
MS.gene91022.t1 MTR_5g016570 24.706 510 270 18 9 466 78 525 4.49e-21 96.3
MS.gene91022.t1 MTR_8g005235 25.121 414 232 12 28 401 27 402 7.59e-21 95.1
MS.gene91022.t1 MTR_8g005225 24.938 405 250 10 23 396 32 413 1.65e-20 94.4
MS.gene91022.t1 MTR_6g009610 24.574 411 255 14 13 408 10 380 1.75e-20 94.0
MS.gene91022.t1 MTR_2g036320 28.495 372 219 15 30 385 69 409 2.57e-20 94.0
MS.gene91022.t1 MTR_6g011050 25.330 379 234 13 28 395 24 364 2.63e-20 93.2
MS.gene91022.t1 MTR_0024s0080 24.464 466 273 14 8 463 5 401 1.28e-19 91.3
MS.gene91022.t1 MTR_7g067660 32.000 225 103 10 261 457 174 376 5.03e-19 89.0
MS.gene91022.t1 MTR_7g067660 33.871 186 107 6 13 193 1 175 1.64e-16 81.6
MS.gene91022.t1 MTR_7g068040 37.430 179 75 4 25 203 14 155 9.85e-19 83.6
MS.gene91022.t1 MTR_8g005265 25.248 404 248 11 28 397 27 410 2.02e-18 87.8
MS.gene91022.t1 MTR_8g005325 25.659 417 227 12 28 401 56 432 4.45e-18 87.0
MS.gene91022.t1 MTR_6g009170 25.630 476 270 16 8 463 5 416 1.25e-17 85.1
MS.gene91022.t1 MTR_6g010850 24.425 348 197 12 128 462 49 343 1.65e-16 81.6
MS.gene91022.t1 MTR_8g037923 23.944 497 288 22 14 464 15 467 1.89e-16 82.0
MS.gene91022.t1 MTR_2g035640 24.290 317 177 11 161 463 77 344 6.30e-16 79.3
MS.gene91022.t1 MTR_5g086230 36.628 172 83 7 29 193 29 181 1.47e-15 75.5
MS.gene91022.t1 MTR_8g005295 29.437 231 136 8 10 227 22 238 6.56e-15 77.4
MS.gene91022.t1 MTR_7g060020 21.014 414 286 12 10 404 11 402 1.23e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91022.t1 AT3G50150 25.887 479 260 15 21 466 84 500 8.86e-31 125
MS.gene91022.t1 AT3G50180 27.312 465 254 20 26 467 177 580 2.44e-29 121
MS.gene91022.t1 AT3G50160 25.786 477 269 17 9 466 82 492 1.42e-28 118
MS.gene91022.t1 AT5G11290 27.473 455 239 17 28 463 33 415 3.03e-28 116
MS.gene91022.t1 AT3G50170 24.206 504 275 16 8 466 89 530 4.01e-28 117
MS.gene91022.t1 AT4G31980 26.398 447 252 12 28 463 293 673 8.29e-28 117
MS.gene91022.t1 AT2G28580 26.898 461 247 19 26 466 107 497 6.46e-27 114
MS.gene91022.t1 AT2G28580 26.898 461 247 19 26 466 121 511 7.21e-27 114
MS.gene91022.t1 AT2G28580 25.636 472 256 17 26 466 39 446 1.26e-25 109
MS.gene91022.t1 AT2G28580 25.636 472 256 17 26 466 107 514 3.11e-25 108
MS.gene91022.t1 AT2G28580 25.636 472 256 17 26 466 121 528 3.87e-25 108
MS.gene91022.t1 AT3G50120 23.918 485 261 16 26 466 102 522 6.25e-25 108
MS.gene91022.t1 AT3G47250 26.514 479 248 20 28 468 61 473 3.32e-24 105
MS.gene91022.t1 AT3G47250 26.514 479 248 20 28 468 61 473 3.32e-24 105
MS.gene91022.t1 AT3G47250 26.514 479 248 20 28 468 61 473 3.32e-24 105
MS.gene91022.t1 AT5G22550 22.921 493 277 18 26 467 42 482 1.10e-23 103
MS.gene91022.t1 AT3G50140 22.421 504 284 15 9 467 90 531 1.89e-23 103
MS.gene91022.t1 AT3G47200 24.477 478 263 16 20 463 38 451 2.53e-23 102
MS.gene91022.t1 AT3G47200 24.477 478 263 16 20 463 38 451 2.53e-23 102
MS.gene91022.t1 AT3G50190 23.454 469 276 16 14 466 83 484 4.74e-23 102
MS.gene91022.t1 AT3G50130 25.056 447 251 17 9 408 116 525 6.53e-22 99.4
MS.gene91022.t1 AT5G22540 23.645 406 246 14 23 402 26 393 8.76e-22 97.8
MS.gene91022.t1 AT2G36430 24.242 363 210 11 28 365 45 367 1.01e-21 97.8
MS.gene91022.t1 AT2G44930 24.565 460 281 14 26 466 82 494 4.41e-21 96.3
MS.gene91022.t1 AT1G67150 23.851 457 265 14 30 466 8 401 9.22e-21 94.7
MS.gene91022.t1 AT1G67150 23.851 457 265 14 30 466 8 401 9.22e-21 94.7
MS.gene91022.t1 AT1G65985 23.445 418 263 9 24 401 10 410 5.20e-20 92.8
MS.gene91022.t1 AT1G65985 23.445 418 263 9 24 401 10 410 5.20e-20 92.8
MS.gene91022.t1 AT1G67150 23.667 469 255 15 30 466 8 405 5.77e-20 92.4
MS.gene91022.t1 AT3G47210 25.201 373 234 12 20 378 85 426 8.24e-18 86.3
MS.gene91022.t1 AT2G28580 25.967 362 202 14 26 356 121 447 3.51e-17 84.3
MS.gene91022.t1 AT3G50150 26.282 312 168 11 26 307 89 368 2.17e-16 81.6
MS.gene91022.t1 AT5G11290 26.404 356 195 14 123 463 43 346 1.64e-15 78.2
MS.gene91022.t1 AT3G60470 24.783 230 130 3 241 466 343 533 3.04e-15 78.6
MS.gene91022.t1 AT3G44710 26.047 215 131 8 30 244 52 238 9.83e-12 67.4

Find 83 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGTTTCCCTTCATGTTGA+TGG 0.193667 6.1:+39109911 None:intergenic
CACCTTATCTAACTTGAAAA+TGG 0.266897 6.1:+39110338 None:intergenic
CTTGGGAGCAAAGCAAAATA+TGG 0.290148 6.1:-39109687 MS.gene91022:CDS
TTGTGTACTATGGGAGAAAT+TGG 0.300484 6.1:-39109369 MS.gene91022:CDS
CCTTGTGGTTCCTCTATGTA+AGG 0.346891 6.1:+39110479 None:intergenic
CCTACGGTTTGGAAATTCAT+AGG 0.347519 6.1:-39109319 MS.gene91022:CDS
AGTGGAGGAATTTGATTGCT+TGG 0.350702 6.1:-39109705 MS.gene91022:CDS
CGTGCGTCCGGGGTGATGAT+TGG 0.352720 6.1:-39109853 MS.gene91022:CDS
GCTAAATTAATGATAGTTGA+TGG 0.361363 6.1:-39110252 MS.gene91022:CDS
TTCTATTGGAGCTTCTCATT+AGG 0.371334 6.1:-39110224 MS.gene91022:CDS
GGTCCTATGGAGATATGTTT+TGG 0.372124 6.1:+39110501 None:intergenic
AATATAGTTCGTAAAGCCTT+TGG 0.372864 6.1:-39110006 MS.gene91022:CDS
AAAATTTGATGCTGAGAAGT+TGG 0.373739 6.1:-39109767 MS.gene91022:CDS
GCTACTGAGCTTCGTGCGTC+CGG 0.379569 6.1:-39109865 MS.gene91022:CDS
ATCCATTTGCTCGACTCCTT+TGG 0.390994 6.1:+39109516 None:intergenic
TGTCGCAGCTGCTTTGCTCC+TGG 0.391804 6.1:-39109293 MS.gene91022:CDS
TTGTTCTCAAGAAGTTATAT+AGG 0.393685 6.1:-39110077 MS.gene91022:CDS
TCTTTGATTTCACTGCTGTC+TGG 0.399496 6.1:+39110045 None:intergenic
TTAATTTAGCTATTTCTTGT+CGG 0.403670 6.1:+39110265 None:intergenic
TCGGTTCTTCCGTTATTTGA+AGG 0.403809 6.1:+39110454 None:intergenic
ATTTCCAAACCGTAGGTATA+TGG 0.411602 6.1:+39109326 None:intergenic
CCATCAACATGAAGGGAAAC+AGG 0.414642 6.1:-39109911 MS.gene91022:CDS
CTACTGAGCTTCGTGCGTCC+GGG 0.416956 6.1:-39109864 MS.gene91022:CDS
GTGGAGGAATTTGATTGCTT+GGG 0.418003 6.1:-39109704 MS.gene91022:CDS
CCTCCTGAGCTATTCTTTGA+AGG 0.422971 6.1:+39109979 None:intergenic
CATTGATGCCAAGCATGTAT+AGG 0.425896 6.1:+39109412 None:intergenic
TCCTCTATGTAAGGGTCCTA+TGG 0.429824 6.1:+39110488 None:intergenic
AGATGCAGTCGGACTTTAGC+TGG 0.434321 6.1:-39110635 MS.gene91022:CDS
TGTTGAAAGAAACTGTTGTT+TGG 0.450764 6.1:+39110181 None:intergenic
AGAACCCAACATCACTTCAA+TGG 0.457516 6.1:+39110605 None:intergenic
GTTCAGGTATATCTCCTTGT+CGG 0.457979 6.1:+39110403 None:intergenic
GTTGTTTCCTTGATATATAG+TGG 0.458518 6.1:+39109736 None:intergenic
TGCCAAAGGAGTCGAGCAAA+TGG 0.467581 6.1:-39109518 MS.gene91022:CDS
TAACTTCTTGAGAACAATGA+AGG 0.468443 6.1:+39110083 None:intergenic
GTTCCCATTGAAGTGATGTT+GGG 0.468967 6.1:-39110609 MS.gene91022:CDS
GTGACCATATACCTACGGTT+TGG 0.473148 6.1:-39109330 MS.gene91022:CDS
TTGGAGCTTCTCATTAGGCT+TGG 0.480629 6.1:-39110219 MS.gene91022:CDS
GAACCCAACATCACTTCAAT+GGG 0.485626 6.1:+39110606 None:intergenic
AGTTCCCATTGAAGTGATGT+TGG 0.490805 6.1:-39110610 MS.gene91022:CDS
GAAAACAAATTAGGCAATGC+GGG 0.492930 6.1:+39109240 None:intergenic
TACCCTTCAAAGAATAGCTC+AGG 0.506192 6.1:-39109982 MS.gene91022:CDS
AAAATAGAAGATCAGAGATA+AGG 0.519894 6.1:-39110380 MS.gene91022:CDS
CACAAGGCACCTTCAAATAA+CGG 0.521326 6.1:-39110463 MS.gene91022:CDS
GAAAATTGCCTATACATGCT+TGG 0.522674 6.1:-39109420 MS.gene91022:CDS
AGGAAACAACTGAAGTTAAG+TGG 0.526842 6.1:-39109723 MS.gene91022:CDS
AGTTATAGTGAGATTTGTGA+AGG 0.534899 6.1:-39109490 MS.gene91022:CDS
TATTCCGCCACTATATATCA+AGG 0.539545 6.1:-39109743 MS.gene91022:CDS
CTCCTGAGCTATTCTTTGAA+GGG 0.539903 6.1:+39109980 None:intergenic
GAACAAAACCATCAACATGA+AGG 0.554414 6.1:-39109919 MS.gene91022:CDS
GATACGTGACCATATACCTA+CGG 0.556626 6.1:-39109335 MS.gene91022:CDS
CTTGTGGTTCCTCTATGTAA+GGG 0.558227 6.1:+39110480 None:intergenic
TCTCAAGAAGTTATATAGGA+AGG 0.565626 6.1:-39110073 MS.gene91022:CDS
TACATGCTTGGCATCAATGT+AGG 0.569828 6.1:-39109408 MS.gene91022:CDS
TACTGAGCTTCGTGCGTCCG+GGG 0.574078 6.1:-39109863 MS.gene91022:CDS
CGCGAACTTCTTGTCCGACA+AGG 0.579693 6.1:-39110417 MS.gene91022:CDS
CGTTATTTGAAGGTGCCTTG+TGG 0.582399 6.1:+39110464 None:intergenic
TCATCTGATGCATTTGTCAA+CGG 0.583328 6.1:-39109944 MS.gene91022:CDS
GTGATTTGTGCTAGCTATGG+TGG 0.584038 6.1:-39110318 MS.gene91022:CDS
TTATTTCGAACGATTGCCAA+AGG 0.584736 6.1:-39109532 MS.gene91022:CDS
TCCATAGGACCCTTACATAG+AGG 0.585065 6.1:-39110489 MS.gene91022:CDS
ACACCAAAACATATCTCCAT+AGG 0.590796 6.1:-39110504 MS.gene91022:CDS
TGAGTAATATGTTTGCATGA+TGG 0.596746 6.1:+39109264 None:intergenic
TAAATGTGTTCTACGACAAG+AGG 0.597783 6.1:-39109465 MS.gene91022:CDS
GTTATAGTGAGATTTGTGAA+GGG 0.598206 6.1:-39109489 MS.gene91022:CDS
ATTCTTTGAAGGGTAACCAA+AGG 0.604039 6.1:+39109990 None:intergenic
AACTTCTTGAGAACAATGAA+GGG 0.607449 6.1:+39110084 None:intergenic
TCGCGCATGTAATGCCACTT+CGG 0.615026 6.1:+39110435 None:intergenic
ACCATTAAAGAAAAGTGCAT+AGG 0.617008 6.1:+39109645 None:intergenic
AACAAAACCATCAACATGAA+GGG 0.620333 6.1:-39109918 MS.gene91022:CDS
CCTTCAAAGAATAGCTCAGG+AGG 0.621033 6.1:-39109979 MS.gene91022:CDS
TTTGCATGATGGTGAGAACC+AGG 0.622828 6.1:+39109275 None:intergenic
CCTATGAATTTCCAAACCGT+AGG 0.624886 6.1:+39109319 None:intergenic
AAGGTGATTTGTGCTAGCTA+TGG 0.635935 6.1:-39110321 MS.gene91022:CDS
TCTGATGCATTTGTCAACGG+TGG 0.640644 6.1:-39109941 MS.gene91022:CDS
ATTGAAGATGAAGATGCAGT+CGG 0.644368 6.1:-39110646 None:intergenic
TTTAGCTCCAATCATCACCC+CGG 0.649238 6.1:+39109846 None:intergenic
AGAAAACAAATTAGGCAATG+CGG 0.658864 6.1:+39109239 None:intergenic
AAACAACTGAAGTTAAGTGG+AGG 0.666190 6.1:-39109720 MS.gene91022:CDS
AATCAAAGACGATTATCGTG+TGG 0.682935 6.1:-39110031 MS.gene91022:CDS
GTTTCCTTGATATATAGTGG+CGG 0.683204 6.1:+39109739 None:intergenic
AAATAACGGAAGAACCGAAG+TGG 0.686561 6.1:-39110449 MS.gene91022:CDS
ACATGAAGGGAAACAGGCGA+AGG 0.692968 6.1:-39109905 MS.gene91022:CDS
CCTTACATAGAGGAACCACA+AGG 0.736522 6.1:-39110479 MS.gene91022:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAACAGTATAATT+TGG - chr6.1:39110076-39110095 MS.gene91022:CDS 10.0%
!! TAAAAAACAGTATAATTTGG+TGG - chr6.1:39110079-39110098 MS.gene91022:CDS 20.0%
!!! TTAATTTAGCTATTTCTTGT+CGG + chr6.1:39109626-39109645 None:intergenic 20.0%
!!! TTGAAATTTTTGTGTACTAT+GGG - chr6.1:39110510-39110529 MS.gene91022:CDS 20.0%
!!! TTTGAAATTTTTGTGTACTA+TGG - chr6.1:39110509-39110528 MS.gene91022:CDS 20.0%
! AAAATAGAAGATCAGAGATA+AGG - chr6.1:39109508-39109527 MS.gene91022:CDS 25.0%
! ATTGAATTGCTTCAGAAAAA+AGG - chr6.1:39110287-39110306 MS.gene91022:CDS 25.0%
! GCTAAATTAATGATAGTTGA+TGG - chr6.1:39109636-39109655 MS.gene91022:CDS 25.0%
! TTGAATTGCTTCAGAAAAAA+GGG - chr6.1:39110288-39110307 MS.gene91022:CDS 25.0%
! TTGTTCTCAAGAAGTTATAT+AGG - chr6.1:39109811-39109830 MS.gene91022:CDS 25.0%
!!! ACATCTTTTCGTTTGTTTTA+AGG + chr6.1:39109743-39109762 None:intergenic 25.0%
AAAATTTGATGCTGAGAAGT+TGG - chr6.1:39110121-39110140 MS.gene91022:CDS 30.0%
AACAAAACCATCAACATGAA+GGG - chr6.1:39109970-39109989 MS.gene91022:CDS 30.0%
AACTTCTTGAGAACAATGAA+GGG + chr6.1:39109807-39109826 None:intergenic 30.0%
AATATAGTTCGTAAAGCCTT+TGG - chr6.1:39109882-39109901 MS.gene91022:CDS 30.0%
AGTTATAGTGAGATTTGTGA+AGG - chr6.1:39110398-39110417 MS.gene91022:CDS 30.0%
CACCTTATCTAACTTGAAAA+TGG + chr6.1:39109553-39109572 None:intergenic 30.0%
GTTATAGTGAGATTTGTGAA+GGG - chr6.1:39110399-39110418 MS.gene91022:CDS 30.0%
TAACTTCTTGAGAACAATGA+AGG + chr6.1:39109808-39109827 None:intergenic 30.0%
TCTCAAGAAGTTATATAGGA+AGG - chr6.1:39109815-39109834 MS.gene91022:CDS 30.0%
TGAATTGCTTCAGAAAAAAG+GGG - chr6.1:39110289-39110308 MS.gene91022:CDS 30.0%
TGAGTAATATGTTTGCATGA+TGG + chr6.1:39110627-39110646 None:intergenic 30.0%
TGTTGAAAGAAACTGTTGTT+TGG + chr6.1:39109710-39109729 None:intergenic 30.0%
! ACCATTAAAGAAAAGTGCAT+AGG + chr6.1:39110246-39110265 None:intergenic 30.0%
! GTTGTTTCCTTGATATATAG+TGG + chr6.1:39110155-39110174 None:intergenic 30.0%
! TCCTATGCACTTTTCTTTAA+TGG - chr6.1:39110242-39110261 MS.gene91022:CDS 30.0%
! TCTGATCTTCTATTTTGTTC+AGG + chr6.1:39109504-39109523 None:intergenic 30.0%
! TTTACTTCTCGAAGTTTTTC+TGG + chr6.1:39109351-39109370 None:intergenic 30.0%
!!! AGTTGATGGTTGTTTTCTAT+TGG - chr6.1:39109650-39109669 MS.gene91022:CDS 30.0%
!!! TGCCATTTTCAAGTTAGATA+AGG - chr6.1:39109548-39109567 MS.gene91022:CDS 30.0%
AAACAACTGAAGTTAAGTGG+AGG - chr6.1:39110168-39110187 MS.gene91022:CDS 35.0%
AATCAAAGACGATTATCGTG+TGG - chr6.1:39109857-39109876 MS.gene91022:CDS 35.0%
ACACCAAAACATATCTCCAT+AGG - chr6.1:39109384-39109403 MS.gene91022:CDS 35.0%
AGGAAACAACTGAAGTTAAG+TGG - chr6.1:39110165-39110184 MS.gene91022:CDS 35.0%
ATTTCCAAACCGTAGGTATA+TGG + chr6.1:39110565-39110584 None:intergenic 35.0%
GAAAATTGCCTATACATGCT+TGG - chr6.1:39110468-39110487 MS.gene91022:CDS 35.0%
GAACAAAACCATCAACATGA+AGG - chr6.1:39109969-39109988 MS.gene91022:CDS 35.0%
GTTTCCTTGATATATAGTGG+CGG + chr6.1:39110152-39110171 None:intergenic 35.0%
TAAATGTGTTCTACGACAAG+AGG - chr6.1:39110423-39110442 MS.gene91022:CDS 35.0%
TATTCCGCCACTATATATCA+AGG - chr6.1:39110145-39110164 MS.gene91022:CDS 35.0%
TCATCTGATGCATTTGTCAA+CGG - chr6.1:39109944-39109963 MS.gene91022:CDS 35.0%
TTATTTCGAACGATTGCCAA+AGG - chr6.1:39110356-39110375 MS.gene91022:CDS 35.0%
TTCTATTGGAGCTTCTCATT+AGG - chr6.1:39109664-39109683 MS.gene91022:CDS 35.0%
TTGTGTACTATGGGAGAAAT+TGG - chr6.1:39110519-39110538 MS.gene91022:CDS 35.0%
! ATTCTTTGAAGGGTAACCAA+AGG + chr6.1:39109901-39109920 None:intergenic 35.0%
AGAACCCAACATCACTTCAA+TGG + chr6.1:39109286-39109305 None:intergenic 40.0%
AGTGGAGGAATTTGATTGCT+TGG - chr6.1:39110183-39110202 MS.gene91022:CDS 40.0%
AGTTCCCATTGAAGTGATGT+TGG - chr6.1:39109278-39109297 MS.gene91022:CDS 40.0%
CATTGATGCCAAGCATGTAT+AGG + chr6.1:39110479-39110498 None:intergenic 40.0%
CCTATGAATTTCCAAACCGT+AGG + chr6.1:39110572-39110591 None:intergenic 40.0%
CTCCTGAGCTATTCTTTGAA+GGG + chr6.1:39109911-39109930 None:intergenic 40.0%
CTTGGGAGCAAAGCAAAATA+TGG - chr6.1:39110201-39110220 MS.gene91022:CDS 40.0%
CTTGTGGTTCCTCTATGTAA+GGG + chr6.1:39109411-39109430 None:intergenic 40.0%
GAACCCAACATCACTTCAAT+GGG + chr6.1:39109285-39109304 None:intergenic 40.0%
GATACGTGACCATATACCTA+CGG - chr6.1:39110553-39110572 MS.gene91022:CDS 40.0%
GTGGAGGAATTTGATTGCTT+GGG - chr6.1:39110184-39110203 MS.gene91022:CDS 40.0%
GTTCAGGTATATCTCCTTGT+CGG + chr6.1:39109488-39109507 None:intergenic 40.0%
GTTCCCATTGAAGTGATGTT+GGG - chr6.1:39109279-39109298 MS.gene91022:CDS 40.0%
TACATGCTTGGCATCAATGT+AGG - chr6.1:39110480-39110499 MS.gene91022:CDS 40.0%
TACCCTTCAAAGAATAGCTC+AGG - chr6.1:39109906-39109925 MS.gene91022:CDS 40.0%
TCGGTTCTTCCGTTATTTGA+AGG + chr6.1:39109437-39109456 None:intergenic 40.0%
! AAATAACGGAAGAACCGAAG+TGG - chr6.1:39109439-39109458 MS.gene91022:CDS 40.0%
! AAGGTGATTTGTGCTAGCTA+TGG - chr6.1:39109567-39109586 MS.gene91022:CDS 40.0%
! CACAAGGCACCTTCAAATAA+CGG - chr6.1:39109425-39109444 MS.gene91022:CDS 40.0%
! CCTACGGTTTGGAAATTCAT+AGG - chr6.1:39110569-39110588 MS.gene91022:CDS 40.0%
! GGTCCTATGGAGATATGTTT+TGG + chr6.1:39109390-39109409 None:intergenic 40.0%
! TCTTTGATTTCACTGCTGTC+TGG + chr6.1:39109846-39109865 None:intergenic 40.0%
!!! TCGAAGTTTTTCTGGAACGT+TGG + chr6.1:39109343-39109362 None:intergenic 40.0%
ATCCATTTGCTCGACTCCTT+TGG + chr6.1:39110375-39110394 None:intergenic 45.0%
CCATCAACATGAAGGGAAAC+AGG - chr6.1:39109977-39109996 MS.gene91022:CDS 45.0%
CCTCCTGAGCTATTCTTTGA+AGG + chr6.1:39109912-39109931 None:intergenic 45.0%
CCTGTTTCCCTTCATGTTGA+TGG + chr6.1:39109980-39109999 None:intergenic 45.0%
CCTTACATAGAGGAACCACA+AGG - chr6.1:39109409-39109428 MS.gene91022:CDS 45.0%
CCTTCAAAGAATAGCTCAGG+AGG - chr6.1:39109909-39109928 MS.gene91022:CDS 45.0%
CCTTGTGGTTCCTCTATGTA+AGG + chr6.1:39109412-39109431 None:intergenic 45.0%
GTGACCATATACCTACGGTT+TGG - chr6.1:39110558-39110577 MS.gene91022:CDS 45.0%
TCCATAGGACCCTTACATAG+AGG - chr6.1:39109399-39109418 MS.gene91022:CDS 45.0%
TCCTCTATGTAAGGGTCCTA+TGG + chr6.1:39109403-39109422 None:intergenic 45.0%
TCTGATGCATTTGTCAACGG+TGG - chr6.1:39109947-39109966 MS.gene91022:CDS 45.0%
TTGGAGCTTCTCATTAGGCT+TGG - chr6.1:39109669-39109688 MS.gene91022:CDS 45.0%
! GTGATTTGTGCTAGCTATGG+TGG - chr6.1:39109570-39109589 MS.gene91022:CDS 45.0%
! TTTAGCTCCAATCATCACCC+CGG + chr6.1:39110045-39110064 None:intergenic 45.0%
! TTTGCATGATGGTGAGAACC+AGG + chr6.1:39110616-39110635 None:intergenic 45.0%
!! CGTTATTTGAAGGTGCCTTG+TGG + chr6.1:39109427-39109446 None:intergenic 45.0%
ACATGAAGGGAAACAGGCGA+AGG - chr6.1:39109983-39110002 MS.gene91022:CDS 50.0%
AGATGCAGTCGGACTTTAGC+TGG - chr6.1:39109253-39109272 MS.gene91022:CDS 50.0%
TGCCAAAGGAGTCGAGCAAA+TGG - chr6.1:39110370-39110389 MS.gene91022:CDS 50.0%
! TCGCGCATGTAATGCCACTT+CGG + chr6.1:39109456-39109475 None:intergenic 50.0%
CGCGAACTTCTTGTCCGACA+AGG - chr6.1:39109471-39109490 MS.gene91022:CDS 55.0%
CTACTGAGCTTCGTGCGTCC+GGG - chr6.1:39110024-39110043 MS.gene91022:CDS 60.0%
GCTACTGAGCTTCGTGCGTC+CGG - chr6.1:39110023-39110042 MS.gene91022:CDS 60.0%
TACTGAGCTTCGTGCGTCCG+GGG - chr6.1:39110025-39110044 MS.gene91022:CDS 60.0%
! TGTCGCAGCTGCTTTGCTCC+TGG - chr6.1:39110595-39110614 MS.gene91022:CDS 60.0%
CGTGCGTCCGGGGTGATGAT+TGG - chr6.1:39110035-39110054 MS.gene91022:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 39109249 39110661 39109249 ID=MS.gene91022
chr6.1 mRNA 39109249 39110661 39109249 ID=MS.gene91022.t1;Parent=MS.gene91022
chr6.1 exon 39109249 39110661 39109249 ID=MS.gene91022.t1.exon1;Parent=MS.gene91022.t1
chr6.1 CDS 39109249 39110661 39109249 ID=cds.MS.gene91022.t1;Parent=MS.gene91022.t1
Gene Sequence

>MS.gene91022

ATGAAGATGCAGTCGGACTTTAGCTGGATAGTTCCCATTGAAGTGATGTTGGGTTCTCTCACTCACGCAGAAGTTCAGTTATGTAGCATTTCCAACGTTCCAGAAAAACTTCGAGAAGTAAATGAAGATGCTTACACACCAAAACATATCTCCATAGGACCCTTACATAGAGGAACCACAAGGCACCTTCAAATAACGGAAGAACCGAAGTGGCATTACATGCGCGAACTTCTTGTCCGACAAGGAGATATACCTGAACAAAATAGAAGATCAGAGATAAGGTTAAGAGAATGTAGCTGTGCCATTTTCAAGTTAGATAAGGTGATTTGTGCTAGCTATGGTGGAAGCAACAACAATATTGTCGAAAAAACAGACCGACAAGAAATAGCTAAATTAATGATAGTTGATGGTTGTTTTCTATTGGAGCTTCTCATTAGGCTTGGCGATTGCATGTTGAACCAAACAACAGTTTCTTTCAACAACGATTCAATCCTTAAAACAAACGAAAAGATGTTGTCTGTTTTAAATGATATAACAATGCTTGAGAATCAAATTCCCTTCATTGTTCTCAAGAAGTTATATAGGAAGGTATTTCCAGACAGCAGTGAAATCAAAGACGATTATCGTGTGGCTAATATAGTTCGTAAAGCCTTTGGTTACCCTTCAAAGAATAGCTCAGGAGGTGCTCATATACTTCATCTGATGCATTTGTCAACGGTGGAACAAAACCATCAACATGAAGGGAAACAGGCGAAGGTAGAATTGTTGTGTTGTGCTACTGAGCTTCGTGCGTCCGGGGTGATGATTGGAGCTAAATTAAATAGCACAAATAAAAAACAGTATAATTTGGTGGATATGTTTGATTTTGATATAAAATTTGATGCTGAGAAGTTGGATATTCCGCCACTATATATCAAGGAAACAACTGAAGTTAAGTGGAGGAATTTGATTGCTTGGGAGCAAAGCAAAATATGGATTAGATGCAAATACACGTCCTATGCACTTTTCTTTAATGGTTTGATATGTTGTGAGCATGACATTGAATTGCTTCAGAAAAAAGGGGTTATTGTAAATGAGTTGAACAAAAGCAATGAAGATTTGTTGATATTATTTCGAACGATTGCCAAAGGAGTCGAGCAAATGGATTCGAGTTATAGTGAGATTTGTGAAGGGTTAAATGTGTTCTACGACAAGAGGATGAAAGTCACAAAAGTGTTGCGAAAATTGCCTATACATGCTTGGCATCAATGTAGGCGAATTTTTGAAATTTTTGTGTACTATGGGAGAAATTGGTACAGTGTTTTGATACGTGACCATATACCTACGGTTTGGAAATTCATAGGAATTGTCGCAGCTGCTTTGCTCCTGGTTCTCACCATCATGCAAACATATTACTCATCCCGCATTGCCTAA
Protein sequence

>MS.gene91022.t1

MKMQSDFSWIVPIEVMLGSLTHAEVQLCSISNVPEKLREVNEDAYTPKHISIGPLHRGTTRHLQITEEPKWHYMRELLVRQGDIPEQNRRSEIRLRECSCAIFKLDKVICASYGGSNNNIVEKTDRQEIAKLMIVDGCFLLELLIRLGDCMLNQTTVSFNNDSILKTNEKMLSVLNDITMLENQIPFIVLKKLYRKVFPDSSEIKDDYRVANIVRKAFGYPSKNSSGGAHILHLMHLSTVEQNHQHEGKQAKVELLCCATELRASGVMIGAKLNSTNKKQYNLVDMFDFDIKFDAEKLDIPPLYIKETTEVKWRNLIAWEQSKIWIRCKYTSYALFFNGLICCEHDIELLQKKGVIVNELNKSNEDLLILFRTIAKGVEQMDSSYSEICEGLNVFYDKRMKVTKVLRKLPIHAWHQCRRIFEIFVYYGRNWYSVLIRDHIPTVWKFIGIVAAALLLVLTIMQTYYSSRIA