AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91172

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91172.t1 MTR_7g006030 99.485 583 3 0 1 583 1 583 0.0 1217
MS.gene91172.t1 MTR_1g116210 84.838 587 80 2 1 583 79 660 0.0 1068
MS.gene91172.t1 MTR_1g007150 78.498 586 115 3 3 583 89 668 0.0 987
MS.gene91172.t1 MTR_3g110240 77.568 584 121 2 4 583 88 665 0.0 983
MS.gene91172.t1 MTR_7g085540 79.029 577 120 1 7 583 117 692 0.0 982
MS.gene91172.t1 MTR_8g014050 72.586 580 156 3 6 583 97 675 0.0 887
MS.gene91172.t1 MTR_1g042280 39.100 289 157 6 31 316 6 278 4.53e-60 207
MS.gene91172.t1 MTR_2g099670 38.710 279 154 5 37 312 9 273 4.78e-60 207
MS.gene91172.t1 MTR_4g126010 37.809 283 159 5 37 316 9 277 6.50e-60 206
MS.gene91172.t1 MTR_2g039930 37.993 279 156 5 37 312 9 273 1.67e-59 206
MS.gene91172.t1 MTR_1g075870 38.754 289 158 6 31 316 6 278 2.83e-59 201
MS.gene91172.t1 MTR_7g097160 38.516 283 157 5 37 316 9 277 4.11e-59 204
MS.gene91172.t1 MTR_1g075870 38.754 289 158 6 31 316 6 278 4.21e-58 201
MS.gene91172.t1 MTR_1g069720 37.716 289 161 6 31 316 5 277 1.17e-57 200
MS.gene91172.t1 MTR_8g018310 37.276 279 157 6 37 312 9 272 6.26e-57 199
MS.gene91172.t1 MTR_8g018310 36.749 283 161 6 37 316 9 276 1.11e-56 196
MS.gene91172.t1 MTR_6g087070 36.268 284 164 5 37 317 9 278 1.01e-55 194
MS.gene91172.t1 MTR_8g102930 36.735 294 166 7 27 317 2 278 4.63e-55 192
MS.gene91172.t1 MTR_1g042280 41.304 230 129 3 90 316 20 246 2.12e-54 187
MS.gene91172.t1 MTR_0492s0030 36.860 293 164 6 29 316 3 279 3.23e-54 189
MS.gene91172.t1 MTR_0543s0020 36.860 293 164 6 29 316 3 279 3.23e-54 189
MS.gene91172.t1 MTR_1g004990 35.439 285 165 6 31 312 5 273 5.51e-53 187
MS.gene91172.t1 MTR_3g110180 35.088 285 166 6 31 312 5 273 6.27e-53 187
MS.gene91172.t1 MTR_3g110180 35.088 285 165 7 31 312 5 272 1.86e-51 182
MS.gene91172.t1 MTR_2g099670 41.784 213 118 3 103 312 12 221 7.00e-51 181
MS.gene91172.t1 MTR_1g075870 40.541 222 126 3 98 316 3 221 1.57e-50 176
MS.gene91172.t1 MTR_2g039930 39.487 195 112 3 121 312 1 192 2.44e-43 159
MS.gene91172.t1 MTR_1g116205 73.737 99 17 2 1 95 79 172 1.39e-41 148
MS.gene91172.t1 MTR_7g097160 41.481 135 75 2 185 316 25 158 1.03e-27 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91172.t1 AT3G13670 84.668 587 84 2 1 583 103 687 0.0 1068
MS.gene91172.t1 AT2G25760 77.133 586 125 4 3 583 76 657 0.0 980
MS.gene91172.t1 AT2G25760 76.910 589 124 6 3 583 76 660 0.0 972
MS.gene91172.t1 AT5G18190 76.603 577 134 1 7 583 100 675 0.0 960
MS.gene91172.t1 AT5G18190 76.603 577 134 1 7 583 100 675 0.0 960
MS.gene91172.t1 AT3G03940 76.256 577 136 1 7 583 110 685 0.0 959
MS.gene91172.t1 AT3G03930 65.600 250 77 2 343 583 23 272 2.43e-113 340
MS.gene91172.t1 AT2G19470 38.516 283 157 5 37 316 9 277 8.31e-60 205
MS.gene91172.t1 AT5G44100 38.408 289 159 6 31 316 5 277 9.72e-60 206
MS.gene91172.t1 AT5G44100 38.408 289 159 6 31 316 5 277 9.72e-60 206
MS.gene91172.t1 AT1G03930 38.596 285 156 6 31 312 5 273 1.47e-59 206
MS.gene91172.t1 AT3G23340 38.754 289 158 6 31 316 5 277 2.52e-59 204
MS.gene91172.t1 AT4G14340 38.408 289 159 6 31 316 11 283 7.41e-59 201
MS.gene91172.t1 AT4G28540 38.062 289 160 6 31 316 9 281 9.78e-59 204
MS.gene91172.t1 AT4G14340 38.408 289 159 6 31 316 11 283 1.88e-58 202
MS.gene91172.t1 AT4G26100 36.749 283 162 5 37 316 9 277 2.49e-58 202
MS.gene91172.t1 AT4G28860 37.543 293 163 7 27 316 2 277 1.83e-57 197
MS.gene91172.t1 AT4G28860 37.543 293 163 7 27 316 2 277 7.86e-57 197
MS.gene91172.t1 AT1G04440 38.062 289 160 6 31 316 5 277 1.13e-56 198
MS.gene91172.t1 AT4G28880 37.884 293 162 7 27 316 2 277 1.23e-56 196
MS.gene91172.t1 AT4G28880 37.884 293 162 7 27 316 2 277 1.23e-56 196
MS.gene91172.t1 AT4G28880 37.884 293 162 7 27 316 2 277 1.23e-56 196
MS.gene91172.t1 AT4G28880 37.884 293 162 7 27 316 2 277 1.23e-56 196
MS.gene91172.t1 AT5G43320 38.062 289 160 6 31 316 5 277 1.43e-56 198
MS.gene91172.t1 AT1G72710 37.276 279 157 6 37 312 9 272 1.50e-56 197
MS.gene91172.t1 AT5G57015 36.042 283 164 5 37 316 9 277 2.49e-56 196
MS.gene91172.t1 AT5G43320 38.062 289 160 6 31 316 5 277 2.70e-56 194
MS.gene91172.t1 AT5G43320 38.062 289 160 6 31 316 5 277 2.70e-56 194
MS.gene91172.t1 AT3G23340 39.245 265 151 5 57 316 4 263 6.69e-54 189
MS.gene91172.t1 AT4G08800 32.509 283 142 6 37 316 9 245 1.93e-42 154

Find 158 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCTCTGGGCACTTATTA+TGG 0.176547 7.4:-93589471 MS.gene91172:CDS
CTTCCTTTATAATGTACTTT+AGG 0.233162 7.4:+93592512 None:intergenic
CATCTCTACCTTTGCTTCAT+TGG 0.235235 7.4:+93590495 None:intergenic
TGGCTTCTTGTTCCAATCTC+TGG 0.237696 7.4:-93589484 MS.gene91172:CDS
AAAAGAAACCTGAACATATC+AGG 0.258582 7.4:+93591254 None:intergenic
TGAGCACCTTCAGTATTAAT+TGG 0.274374 7.4:+93590755 None:intergenic
GGTGGTAATGACCGTCTTAA+TGG 0.277319 7.4:-93592874 MS.gene91172:CDS
AAACTTGGCAAAGGTGGATT+TGG 0.289497 7.4:-93592925 MS.gene91172:CDS
TGCAAGTGTTCATGCTCATT+TGG 0.304706 7.4:-93591153 MS.gene91172:CDS
AACAGTAAAGGTTGCAACTA+TGG 0.325296 7.4:-93592724 MS.gene91172:CDS
GTTACCATGGCAAGGTTATC+AGG 0.332076 7.4:-93591060 MS.gene91172:intron
AACCATTATCCCATCGTCTA+TGG 0.333296 7.4:+93587482 None:intergenic
TTTCTTGTTGATCTCGGATT+AGG 0.333361 7.4:-93591411 MS.gene91172:intron
GTCCAAGCTTGTGGGATGTT+TGG 0.336979 7.4:-93592361 MS.gene91172:CDS
TCTATAGCTGGGGTTACTAA+TGG 0.339143 7.4:-93589252 MS.gene91172:CDS
CTTATTATGGATGCTGGAAC+TGG 0.352603 7.4:-93589458 MS.gene91172:CDS
GGCTTCTTGTTCCAATCTCT+GGG 0.354817 7.4:-93589483 MS.gene91172:CDS
TTTGTTGGTCGTCGAGTAAC+CGG 0.359465 7.4:-93592895 MS.gene91172:CDS
TTCTTCTCTTGTGCTGTACC+TGG 0.364237 7.4:+93591438 None:intergenic
ATTGGCCGCAGTGCAGGATT+TGG 0.366177 7.4:+93590773 None:intergenic
CATAATAAGTGCCCAGAGAT+TGG 0.371273 7.4:+93589472 None:intergenic
GACGATGGGATAATGGTTAC+AGG 0.373311 7.4:-93587477 MS.gene91172:CDS
AGCAATGCATGCCACCATTT+CGG 0.376237 7.4:+93591649 None:intergenic
ATTTCCAAGCACACATGTTA+AGG 0.378927 7.4:-93587353 MS.gene91172:intron
GGCCACTGCTGGAAGTCGTT+GGG 0.383031 7.4:-93588403 MS.gene91172:CDS
GCAAGTGTTCATGCTCATTT+GGG 0.388698 7.4:-93591152 MS.gene91172:CDS
CAGAAGCAGCATAGCATCTC+AGG 0.394079 7.4:+93590899 None:intergenic
CTTCTTGTTTATCCATTTGA+AGG 0.400317 7.4:+93588455 None:intergenic
TATTACATTACTTCTATAGC+TGG 0.401862 7.4:-93589264 MS.gene91172:CDS
ATCCATAGACGATGGGATAA+TGG 0.409318 7.4:-93587484 MS.gene91172:CDS
ATACCTAAAGTACATTATAA+AGG 0.411632 7.4:-93592515 MS.gene91172:CDS
GATATTAGCTTGGAATAGTT+AGG 0.422192 7.4:+93590818 None:intergenic
ATTGATATCCATTGTGTAGC+AGG 0.425137 7.4:+93590534 None:intergenic
ACACATACCCTCTCAGGAAA+AGG 0.427758 7.4:+93593902 None:intergenic
GATAACCTTGCCATGGTAAC+CGG 0.435532 7.4:+93591063 None:intergenic
CTATAGCTGGGGTTACTAAT+GGG 0.437207 7.4:-93589251 MS.gene91172:CDS
ACCAGCGCCCTGATATGTTC+AGG 0.437919 7.4:-93591262 MS.gene91172:intron
TTCAAAGTGGAGAGGAAACT+TGG 0.443586 7.4:-93592940 MS.gene91172:CDS
GCGAGTCTTTCCCCTTCAAA+TGG 0.445977 7.4:-93588467 MS.gene91172:CDS
CACATACCCTCTCAGGAAAA+GGG 0.446418 7.4:+93593903 None:intergenic
GTATTAATTGGCCGCAGTGC+AGG 0.451258 7.4:+93590767 None:intergenic
TCTCTTGTGGTGATGTCAAA+AGG 0.451724 7.4:-93589225 MS.gene91172:intron
GTTTCCTGAGTTTCGTCAGC+AGG 0.453762 7.4:+93587391 None:intergenic
CAGCATACCTCAGTGGCACC+GGG 0.458135 7.4:+93592850 None:intergenic
TAATACTGAAGGTGCTCAAA+AGG 0.460450 7.4:-93590750 MS.gene91172:intron
TCAGCATACCTCAGTGGCAC+CGG 0.460949 7.4:+93592849 None:intergenic
TCCTTGTTTGATAGTGTGCT+TGG 0.461993 7.4:-93590797 MS.gene91172:CDS
TGTGGAGTCATTGTCGATCT+TGG 0.469974 7.4:-93591627 MS.gene91172:CDS
AAATTGTTTCTTGTTGATCT+CGG 0.470903 7.4:-93591417 MS.gene91172:CDS
TTCATTATAGATATGTGCAT+GGG 0.475655 7.4:-93591494 MS.gene91172:intron
GTGACTTCAATGGCCACTGC+TGG 0.476110 7.4:-93588414 MS.gene91172:CDS
ATGTAGGATGTCTGCCGAAA+TGG 0.477227 7.4:-93591663 MS.gene91172:intron
ATTACATTACTTCTATAGCT+GGG 0.477779 7.4:-93589263 MS.gene91172:CDS
GGAATGGATCATGGAGCAAT+GGG 0.480666 7.4:-93589295 MS.gene91172:CDS
GTTGTTATGTCACGGAATGC+TGG 0.481715 7.4:-93588378 MS.gene91172:CDS
GAGAGGTAGATTGAATATTG+AGG 0.484728 7.4:-93590601 MS.gene91172:CDS
TGGCAAAGGTGGATTTGGAC+AGG 0.492641 7.4:-93592920 MS.gene91172:CDS
TTCCAAACATCCCACAAGCT+TGG 0.493712 7.4:+93592359 None:intergenic
CGTCTATGGATTCCCTCACT+AGG 0.494306 7.4:+93587496 None:intergenic
CATAGGACACATACCCTCTC+AGG 0.494559 7.4:+93593896 None:intergenic
TCGTCAGCAGGTCTTCGCCT+TGG 0.501723 7.4:+93587403 None:intergenic
ATCAAACAAGGATATTAGCT+TGG 0.504809 7.4:+93590808 None:intergenic
TGGCCACTGCTGGAAGTCGT+TGG 0.506701 7.4:-93588404 MS.gene91172:CDS
AGGAAATGTCTGAAAGGAGT+AGG 0.507896 7.4:+93590875 None:intergenic
GAATGCTGGATTCAGTGATC+AGG 0.508380 7.4:-93588364 MS.gene91172:intron
CATGCTTGGTCCAAGCTTGT+GGG 0.512086 7.4:-93592369 MS.gene91172:CDS
TTCTTGTTTATCCATTTGAA+GGG 0.516197 7.4:+93588456 None:intergenic
TTCCTCTCCACTTTGAACAT+AGG 0.519828 7.4:+93592946 None:intergenic
AGCACCCTTGGTGGAAGTCA+TGG 0.521686 7.4:-93592539 MS.gene91172:CDS
TGGGCACTTATTATGGATGC+TGG 0.523125 7.4:-93589464 MS.gene91172:CDS
TCACAGCAACTGCAGCTACA+TGG 0.524987 7.4:-93587453 MS.gene91172:CDS
CTAACCTTAACATGTGTGCT+TGG 0.525324 7.4:+93587349 None:intergenic
AGGTGTTGCTCAAGAGGATG+AGG 0.525431 7.4:-93593936 MS.gene91172:CDS
TCAAATGGATAAACAAGAAG+TGG 0.528244 7.4:-93588452 MS.gene91172:CDS
ACGAAACTCAGGAAACTCTT+CGG 0.529891 7.4:-93587384 MS.gene91172:CDS
TTCTTTATAGGAATGGATCA+TGG 0.534028 7.4:-93589304 MS.gene91172:intron
CGGCCTTCTTATTAGTTGTG+TGG 0.534547 7.4:-93589504 MS.gene91172:CDS
ACCTGAACATATCAGGGCGC+TGG 0.539965 7.4:+93591261 None:intergenic
GGTGGTTTGAGTGCTAATAA+AGG 0.540456 7.4:-93593956 MS.gene91172:CDS
AGGAATGGATCATGGAGCAA+TGG 0.542705 7.4:-93589296 MS.gene91172:CDS
TAATAAAGGTGTTGCTCAAG+AGG 0.543294 7.4:-93593942 MS.gene91172:CDS
TACTAATGGGAGCTCTCTTG+TGG 0.544290 7.4:-93589238 MS.gene91172:CDS
TTCATAAAGGCCGGTTACCA+TGG 0.544662 7.4:-93591073 MS.gene91172:CDS
ATGCAGGTTATGGACATGCT+TGG 0.546212 7.4:-93592383 MS.gene91172:intron
GACCCAAAGGTTCAAGTAGG+AGG 0.548405 7.4:-93592973 MS.gene91172:intron
TTTGAACATAGAAACAGTAA+AGG 0.551586 7.4:-93592736 MS.gene91172:CDS
TGGGATGTTTGGAATACCAC+AGG 0.555511 7.4:-93592350 MS.gene91172:CDS
AAGCCACACAACTAATAAGA+AGG 0.555747 7.4:+93589501 None:intergenic
AAGACCTGCTGACGAAACTC+AGG 0.556055 7.4:-93587395 MS.gene91172:CDS
TCTTGGAGAAGATGCACTCA+AGG 0.557515 7.4:-93591610 MS.gene91172:CDS
CACAGCAACTGCAGCTACAT+GGG 0.559415 7.4:-93587452 MS.gene91172:CDS
GAGAGGAAACTTGGCAAAGG+TGG 0.562906 7.4:-93592931 MS.gene91172:CDS
GTTCATTATAGATATGTGCA+TGG 0.563871 7.4:-93591495 MS.gene91172:intron
ACATGCTTGGTCCAAGCTTG+TGG 0.566277 7.4:-93592370 MS.gene91172:CDS
ATTAAGACGGTCATTACCAC+CGG 0.568388 7.4:+93592876 None:intergenic
TTGTACACTTGCCACTCGTA+AGG 0.569716 7.4:+93592697 None:intergenic
GGATTCCCTCACTAGGGTAG+AGG 0.571629 7.4:+93587503 None:intergenic
AATGACCGTCTTAATGGCCC+CGG 0.574417 7.4:-93592868 MS.gene91172:CDS
TACACTTGCCACTCGTAAGG+AGG 0.576490 7.4:+93592700 None:intergenic
ATAAACAAGAAGTGGAGAGA+AGG 0.576509 7.4:-93588444 MS.gene91172:CDS
TTTGACCCAAAGGTTCAAGT+AGG 0.576801 7.4:-93592976 MS.gene91172:intron
TGTTTGGAATACCACAGGCC+AGG 0.580670 7.4:-93592345 MS.gene91172:CDS
AACTCAAGGAAATGTCTGAA+AGG 0.580963 7.4:+93590869 None:intergenic
GTTGGGGTGTTGTTATGTCA+CGG 0.581602 7.4:-93588386 MS.gene91172:CDS
TCATGTTCACTACAAACTCA+AGG 0.582669 7.4:+93590855 None:intergenic
GTGTTCATGCTCATTTGGGA+AGG 0.584104 7.4:-93591148 MS.gene91172:CDS
GGGGTGATGGGTGATGAAAG+TGG 0.587284 7.4:-93593977 None:intergenic
TAATGGCCCCGGTGCCACTG+AGG 0.587700 7.4:-93592857 MS.gene91172:intron
TATCATTACAATGTAGCGGA+TGG 0.588065 7.4:-93589563 MS.gene91172:CDS
TGGCACCGGGGCCATTAAGA+CGG 0.592504 7.4:+93592863 None:intergenic
CAAGAATGCCAATGAAGCAA+AGG 0.595613 7.4:-93590503 MS.gene91172:intron
GGAAATGTCTGAAAGGAGTA+GGG 0.595669 7.4:+93590876 None:intergenic
TGATTTCCTCTACCCTAGTG+AGG 0.596385 7.4:-93587509 MS.gene91172:CDS
CTTGGAGAAGATGCACTCAA+GGG 0.598220 7.4:-93591609 MS.gene91172:CDS
GATTTCCTCTACCCTAGTGA+GGG 0.598868 7.4:-93587508 MS.gene91172:CDS
CTGCGGCCAATTAATACTGA+AGG 0.599700 7.4:-93590761 MS.gene91172:CDS
AAGTGGAGAGACACCTCCAC+TGG 0.602028 7.4:-93591302 MS.gene91172:CDS
AAAGAAACCTGAACATATCA+GGG 0.602522 7.4:+93591255 None:intergenic
GTCTATGGATTCCCTCACTA+GGG 0.605702 7.4:+93587497 None:intergenic
TACCAGGTCGGGCAAAAGAG+AGG 0.609022 7.4:-93590618 MS.gene91172:intron
TGAGGGAATCCATAGACGAT+GGG 0.610527 7.4:-93587491 MS.gene91172:CDS
TCTTGTTTATCCATTTGAAG+GGG 0.615159 7.4:+93588457 None:intergenic
CGCCTATGTTCAAAGTGGAG+AGG 0.617102 7.4:-93592948 MS.gene91172:CDS
TATTCCATGACTTCCACCAA+GGG 0.620145 7.4:+93592535 None:intergenic
GTGAGGGAATCCATAGACGA+TGG 0.620456 7.4:-93587492 MS.gene91172:CDS
ACCCCAACGACTTCCAGCAG+TGG 0.622356 7.4:+93588401 None:intergenic
TTATACTCACGCCTGGCCTG+TGG 0.625190 7.4:+93592334 None:intergenic
TTCAACATGCTGACCAGTGG+AGG 0.626398 7.4:+93591289 None:intergenic
TTACATTACTTCTATAGCTG+GGG 0.629898 7.4:-93589262 MS.gene91172:CDS
ATATTCAACATGCTGACCAG+TGG 0.633992 7.4:+93591286 None:intergenic
ACATACCCTCTCAGGAAAAG+GGG 0.634258 7.4:+93593904 None:intergenic
AGCACCTGATAACCTTGCCA+TGG 0.635229 7.4:+93591056 None:intergenic
TTGGAGAAGATGCACTCAAG+GGG 0.638893 7.4:-93591608 MS.gene91172:CDS
AAAGGCCGGTTACCATGGCA+AGG 0.640441 7.4:-93591068 MS.gene91172:CDS
ACAAGGAGAATATTACGTGA+TGG 0.641400 7.4:-93592489 MS.gene91172:intron
ACACTTGCCACTCGTAAGGA+GGG 0.643172 7.4:+93592701 None:intergenic
GTAGAGCGAGGGATTGCAGA+CGG 0.643300 7.4:-93589524 MS.gene91172:CDS
CTCTTATATTAAGCAAACCA+AGG 0.643646 7.4:-93587420 MS.gene91172:CDS
GCCACTGCTGGAAGTCGTTG+GGG 0.646395 7.4:-93588402 MS.gene91172:CDS
TTAGCGCAGCATGTAGAGCG+AGG 0.648996 7.4:-93589536 MS.gene91172:CDS
TCCAAGCACACTATCAAACA+AGG 0.651722 7.4:+93590796 None:intergenic
GTGGAGAGGAAACTTGGCAA+AGG 0.654106 7.4:-93592934 MS.gene91172:CDS
TAGCGCAGCATGTAGAGCGA+GGG 0.654538 7.4:-93589535 MS.gene91172:CDS
TAGGATGTCTGCCGAAATGG+TGG 0.657696 7.4:-93591660 MS.gene91172:CDS
GTACATTATAAAGGAAGACA+AGG 0.658821 7.4:-93592506 MS.gene91172:CDS
GTTGGTCGTCGAGTAACCGG+TGG 0.658919 7.4:-93592892 MS.gene91172:CDS
GGTGTTGCTCAAGAGGATGA+GGG 0.659331 7.4:-93593935 MS.gene91172:CDS
TAGGTATCATTACAATGTAG+CGG 0.659418 7.4:-93589567 MS.gene91172:CDS
AATGGTGGCATGCATTGCTG+TGG 0.668208 7.4:-93591645 MS.gene91172:CDS
GTATTCCATGACTTCCACCA+AGG 0.671722 7.4:+93592534 None:intergenic
AGGTTCGCCTATGTTCAAAG+TGG 0.676871 7.4:-93592953 MS.gene91172:CDS
ACTATGGCCCTCCTTACGAG+TGG 0.689741 7.4:-93592708 MS.gene91172:CDS
AGCATACCTCAGTGGCACCG+GGG 0.709149 7.4:+93592851 None:intergenic
TGGAGAAGATGCACTCAAGG+GGG 0.711646 7.4:-93591607 MS.gene91172:intron
TCATTATAGATATGTGCATG+GGG 0.716228 7.4:-93591493 MS.gene91172:intron
CAACCCTCAGCATACCTCAG+TGG 0.734914 7.4:+93592843 None:intergenic
GTGATGGGTGATGAAAGTGG+TGG 0.743174 7.4:-93593974 MS.gene91172:CDS
TTGGACCAAATCCTGCACTG+CGG 0.818000 7.4:-93590778 MS.gene91172:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr7.4 gene 93586766 93593993 93586766 ID=MS.gene91172
chr7.4 mRNA 93586766 93593993 93586766 ID=MS.gene91172.t1;Parent=MS.gene91172
chr7.4 exon 93593910 93593993 93593910 ID=MS.gene91172.t1.exon1;Parent=MS.gene91172.t1
chr7.4 CDS 93593910 93593993 93593910 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
chr7.4 exon 93592858 93592986 93592858 ID=MS.gene91172.t1.exon2;Parent=MS.gene91172.t1
chr7.4 CDS 93592858 93592986 93592858 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
chr7.4 exon 93592697 93592770 93592697 ID=MS.gene91172.t1.exon3;Parent=MS.gene91172.t1
chr7.4 CDS 93592697 93592770 93592697 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
chr7.4 exon 93592490 93592559 93592490 ID=MS.gene91172.t1.exon4;Parent=MS.gene91172.t1
chr7.4 CDS 93592490 93592559 93592490 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
chr7.4 exon 93592344 93592399 93592344 ID=MS.gene91172.t1.exon5;Parent=MS.gene91172.t1
chr7.4 CDS 93592344 93592399 93592344 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
chr7.4 exon 93591608 93591679 93591608 ID=MS.gene91172.t1.exon6;Parent=MS.gene91172.t1
chr7.4 CDS 93591608 93591679 93591608 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
chr7.4 exon 93591412 93591506 93591412 ID=MS.gene91172.t1.exon7;Parent=MS.gene91172.t1
chr7.4 CDS 93591412 93591506 93591412 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
chr7.4 exon 93591263 93591329 93591263 ID=MS.gene91172.t1.exon8;Parent=MS.gene91172.t1
chr7.4 CDS 93591263 93591329 93591263 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
chr7.4 exon 93591061 93591190 93591061 ID=MS.gene91172.t1.exon9;Parent=MS.gene91172.t1
chr7.4 CDS 93591061 93591190 93591061 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
chr7.4 exon 93590751 93590969 93590751 ID=MS.gene91172.t1.exon10;Parent=MS.gene91172.t1
chr7.4 CDS 93590751 93590969 93590751 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
chr7.4 exon 93590504 93590634 93590504 ID=MS.gene91172.t1.exon11;Parent=MS.gene91172.t1
chr7.4 CDS 93590504 93590634 93590504 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
chr7.4 exon 93589412 93589586 93589412 ID=MS.gene91172.t1.exon12;Parent=MS.gene91172.t1
chr7.4 CDS 93589412 93589586 93589412 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
chr7.4 exon 93589226 93589316 93589226 ID=MS.gene91172.t1.exon13;Parent=MS.gene91172.t1
chr7.4 CDS 93589226 93589316 93589226 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
chr7.4 exon 93588365 93588522 93588365 ID=MS.gene91172.t1.exon14;Parent=MS.gene91172.t1
chr7.4 CDS 93588365 93588522 93588365 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
chr7.4 exon 93587354 93587542 93587354 ID=MS.gene91172.t1.exon15;Parent=MS.gene91172.t1
chr7.4 CDS 93587354 93587542 93587354 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
chr7.4 exon 93586766 93586789 93586766 ID=MS.gene91172.t1.exon16;Parent=MS.gene91172.t1
chr7.4 CDS 93586766 93586789 93586766 ID=cds.MS.gene91172.t1;Parent=MS.gene91172.t1
Gene Sequence

>MS.gene91172

ATGGGTGATGAAAGTGGTGGTTTGAGTGCTAATAAAGGTGTTGCTCAAGAGGATGAGGGCAATACTACCCCTTTTCCTGAGAGGGTATGTGTCCTATGAGTTTGTTCAATTTTTCATGGCATGAAAATGCTTTAGATCATTTTTTTTTTTTTTGGTTGGTTTTTATGAGCTAGCCGTGAAATTAACACACTAAATGCAGAGAAGTAGGGATAAATGGGCTGCGTTCCAGCATATCAATTGTTCCTACAACATGTAGTCAAGAGAGTTTGGATTATGTTTTAATTAGAATGAATTTATTATTTATGGTAACTTGATTTTGATCGGATAAATGTTGGTATAGATTTATTGATATCTATGGAGAAGTTTAGAAATCGGATAAATGTTGGTATAGATTTATTGATATCTATGGAGAAATTTAGAAAGTTAGCTCATCGAAAAAAAATAATTTTCATCTTATACAAAGAAACCATGTTTTAAAAAATTTATTTATGTTGCAAAGATTGTTTCTGCAACCAATTTGATTGATAAACACCTAATTATGTTTGGTTAAGTTTATAAAAATATGTAATCAGTAGGTGCAATCATACAAGCACTAATGCATCGGATCCCATTAGAATTTCATAGTAAAGAGATGGCCTGAACAAGTGTTCATAAGCGGGGGCAATCCTCACCTCACAACCGGTTTTTTGGGGTTGTTTTAGGGGCGAAACTAGAACTAGGATGGGCGACCTCTTGGGTTGCACCTCATCCCAACACTTTTGGAACCCAAAAAATATGCAATGAATTATGACTTACTAATAAGCTCAAAAGGAGCTTAGTTTAAGAAGATTTTTGTATATGCGATGGTTAATTAAGCTTTTATGAATTAAGCTGTTTGATTAAATGTGACTACAATGTCTCTCTTCATGAATTATTTTTATTTTTGAATGATGTAACCATGGTTAATATATATGTGCTTATTCGTTTCAATATTTTTTTCCTTTCCTTCAATTTGTTTTGACCCAAAGGTTCAAGTAGGAGGTTCGCCTATGTTCAAAGTGGAGAGGAAACTTGGCAAAGGTGGATTTGGACAGGTTTTTGTTGGTCGTCGAGTAACCGGTGGTAATGACCGTCTTAATGGCCCCGGTGCCACTGAGGTATGCTGAGGGTTGTAACTTGGAACTTTAATGTGGTTAAAGGATTTTCATTGGATTTAAGTTTATTGCTATCTTTTCATATTTCAGGTGGCTTTGAAATTTGAACATAGAAACAGTAAAGGTTGCAACTATGGCCCTCCTTACGAGTGGCAAGTGTACAAGTAGGTATCTTAATTGCAGTATATTGTATAGTCAAAAATCTTAACTGTAGTATATTGTAAATTGGTTTGCATTTATGTACAAGTTTCGTGAAGAGGTAAATTTGCCTGAGATTTGTTTTTTATATTTTGTTTTGAAGCACCCTTGGTGGAAGTCATGGAATACCTAAAGTACATTATAAAGGAAGACAAGGAGAATATTACGTGATGGTATGATCTACACAATAAGCATTGTATATTATCTCATTTCACCTTAGCCAATTAACTATTTTTTAATGATTATCATTATATTATATGCAGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTTTGGAATACCACAGGCCAGGCGTGAGTATAAGCCTTTTATGATTGTATCTGCTTCTTTGTTGCTCTTGTGTTTTACATAAATGACCGTTACATATTGATTGTATATTTTAAGCTTTCTTTGTTAAGATTATATTGGAGTGAGGTGTGACTCAGTTTTAGTTTAATTTCTTCCATCTAACCAAACTAAAACAAGATTAGTTATATTTTGTATAGGCGGTTTTTGGTTTGGCTATTGATATGATTTATGTAGAACATTATGGCGCTGTTTGATCCAAGTAGCGGATTCTACTTAGTGGGATAAGGCTTGGTTGTTTTTGTTGTAGGTGTAAATGGTTTATACTGAACTCTTTGTGATGTCAGTCTTCTGTTTTCATTTTTCGAAGAAAATTGATCTTACTTGACATTTGTAGAAATCTTGAATTCTACTTTATACGTAAATCACCATTCAAGTAAATTCTTTGAATACTGTAGCTTTGACGCGCTTTGTGCATTAATTACGTATTCTGCTTCACAAATGTTATATCTAAGCCTTCTATTCTGGCTGTGTCCTCTATATCTTATTTATCCATTTTCTTCTGTCAGTGAGCCAATAATTAATATGCTCCTTTTTTTTTCCCTTTCTGGTTTGTGTTTGTCTTTTTTTTTTAATGGAATTTATTGATTTGATTGTCTTTTGAATATGTAGGATGTCTGCCGAAATGGTGGCATGCATTGCTGTGGAGTCATTGTCGATCTTGGAGAAGATGCACTCAAGGGGGTATGTTATAGATCAAACACATGCTTGTATTCAGCCTTTTGTTTGGTATATTGATTTAGTTGAGTTTTCTGGTTTCTAAATATTGCTTTTGTTCATTATAGATATGTGCATGGGGATGTAAAACCAGAGAACTTTTTACTAGGTCAGCCAGGTACAGCACAAGAGAAGAAATTGTTTCTTGTTGATCTCGGATTAGGTGAGTAGTTTGAATTTGAAGTGTGAGAAATTTTGTTTTTGCCGGCCCCGTTTTTTTAATCTTACAAGGATTTTATTTTCAGCAACAAAGTGGAGAGACACCTCCACTGGTCAGCATGTTGAATATGACCAGCGCCCTGATATGTTCAGGTTTCTTTTTTCACTCTTTTATTAGCGTAAAAATATCCAACATCTTGAGGCTTATATTTTTAATTTTTGCAGAGGAACTGTTCGATATGCAAGTGTTCATGCTCATTTGGGAAGGACTGCTAGCAGAAGAGATGATCTTGAATCTCTTGCATATACTCTCATTTTTCTTCATAAAGGCCGGTTACCATGGCAAGGTTATCAGGTGCTTACACCTTTTTTATTCTCATCCAGTATTTGTGGCGATTGGATTCCATTACATGTTTGTTTTAATCCGTTTTTAATTTCTCTGACAGGGAGATAATAAGTCGTATCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGCTATGCTGCTTCTGCCCTACTCCTTTCAGACATTTCCTTGAGTTTGTAGTGAACATGAAATTCGATGAAGAGCCTAACTATTCCAAGCTAATATCCTTGTTTGATAGTGTGCTTGGACCAAATCCTGCACTGCGGCCAATTAATACTGAAGGTGCTCAAAAGGTAATGATGGTGTTGTTATATTAGAGATCTTCTATTTTATTATCACGCTTTTAAACCTTTGGGTGGCGTCATTGTATTTACCATGATCATCTGTTTCCCAAATTGAAATTTACCAGGTCGGGCAAAAGAGAGGTAGATTGAATATTGAGGAAGAAGATGATTCGCAGCCTAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATATCAATTTACAATGCAAGAATGCCAATGAAGCAAAGGTAGAGATGCAATCACTTTTTGCCGATGTTTCATTAATTTGACCAATTGAATATATATAAGAAGCCTCATCTGATTAGTGGATGCGGCTACATGGATCTCGAGATGCAAGAATCCCTATTATGATTTAACTTTAAAAGATAAATTATTTACCTCCGAATCTATGTTACATAAGTACGGGTACGGTACCCGGTACAATACGGGTACCGACTACCGGTACGAGAATATGGCAATTTTTAAAAAAAATTAAGGTACGGGTACATCCATAAAATCATGAATTTTGTTATATAATATATAACATGAGAGCTAAATTCTTCAATTTACAACAAAAGCATCACAATAAGAGTTTAAAAATTTGAAAATTAGTGTTGGTTACAACAACAAAAAAACTCATGCACACATAACACTATATATTAATATACAAGAGAAAGTCACAATTTTCATTCACAGTAGAATAATGAGCAAAATTGATGTACCACGAGTACCGTATGTGTACCCGGTACGGGTACTTCACCTTTTTACAAGCACTCATGCTTCAGAGCTCCAAATCTATCATAATGATGTCCAAACACGTGTCCGAACCACCTTATATGCTGTTTTACTATCTTTCCTATAATGTTAGTCTAATCTAACACATGTCGTATAGATATGGTGCACATGTCATATAGATATCGGTGTCTTGCTGTGATTTACTTGGTTAATATATGGGAAAATATATATAAAACAAATTTAACCATCTGATATGTCTGGGAGTGCATAACTTGTCATTCTTTATAAATTTGTATATTCCTTGTGTTTGTTTATCTGACTTGGGATCTTCACATATAAATGAGTTATAACTTGAAGTAAAACGTATCTACTGCTTGGGTGTTTTGTTATGATGATGTTATGGTTTACTGAAAAGTGGCTGTACTGTTAGGTATCATTACAATGTAGCGGATGGACGATTAGCGCAGCATGTAGAGCGAGGGATTGCAGACGGCCTTCTTATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCACTTATTATGGATGCTGGAACTGGATTTACAAATCAAGTTTACAAGTTGTCACCTTTTTTCTTACACAAGGTTGAATTAAATGTTGTACATCATTGCATGTGGAAAGCATTGTAACCTATTTTCAGTTTTTTGAAACTTACCCATCCAATTCTGCTTCTTTATAGGAATGGATCATGGAGCAATGGGAGAAGAACTATTACATTACTTCTATAGCTGGGGTTACTAATGGGAGCTCTCTTGTGGTGATGTCAAAAGGTTTGTTTGCTTTACTTACAAATGAAGAATGATATTTTTCTCCGTAAATGCATCAACATTGGATCCAATTTCGGGGGTCTTTAAGTTAGTTAGGTAATTAGGGTCTCTGTGTTCCCAAAAAATGGTTTTCTTTTTTTACCATTAGTATATTCAAAACGCCAGTAAACTATGATAAGGGCATGTGTATTAAGTATTAACAGTTCCCATATCTCTGAAATTTGAGCAGGGGTGGGGATAATGATGCACCTCTTGTTGCTAATTTCATGGTTCCCCTCTACACTAAATGGGAAATTAAGATAGATTACAAGTATTATTATACATTGTTTTTGAATACCCGGCTGTCTGTAGGATCCACATAAATGGGAGTGAGGGTGACTTGATTGTTGATTCAATAAGCTTGGTGAATTTTATATAATTAAGTTAATAAGTTGCATATTTTAATTTGGAGTAATTTGAAAGTCTATTCACATGGAATTCGCTTTTTACATGATTTGTCTTTTATATTCCCGCCTGTTCCAATTTCCTGTACAAGTATGGCAAAGAGGCTCTACTCAAATTTAGTGCCTGTGTGACTTTCAATTTTTTAGCAGATCTATCTGGATGTTGTTTGTTCACTTGCATGAGGGTTTCTTTCTCTGCTTTAATACTATAGAGGGAACAAGTGAGAAAAAAACTTCATTGTGATTTGTTCTGGTTTCCACAGGCACACAGTATACACAACAATCATACAAAGTAAGCGAGTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCACGTGACTTCAATGGCCACTGCTGGAAGTCGTTGGGGTGTTGTTATGTCACGGAATGCTGGATTCAGTGATCAGGTTTGCTGTTTATTTTGTATTCTAATCTGTGATATGATATAATGGAATAAAAGCTTTTGAGTATTTATTTTCCTGCCTTTATTCAAAATGTTTTGTACATTTGTATTTCATTGAGTATTACTATTACTACATGGCCTGGCTTTGGTCTCCGAGTAATATATCAAACTGGTGTGCTTGCAATCCTCTTTGGATTGGATCAGTAATTTAGTGGTACACCCTGCCAACAAAGTTTGATAGAATTTAGCCAAAATCCACCTATTTTCTAGCTTGGTTTGTTGAAATTGGGTCCAACTCATCCTTACAAAATCAGCTTGTAAGGTGAGGAGTACCTCCTTTTTCTAAACTCTTATCTAGAGTCCTATCTTTCCAACACGGGACTTGGTTTTTTCCCCCAATATGGTTATTGACTTGTTGGATAGATCATAGGGGTTGGTTCCTCTTATTGAACTCATTCTGGTTATTGTCAAAACAATTCTTGTTTGTTGGCCTTTTCCTTCACTTCACTAGTTCAAGGTTAACTTTATTAAGAAATTGCAACTGTAGGAAGCACTATTGGGTTGTTAAGCATTGTAAGGTCGCTTAATACTGTCCCATAATACTGTCCCATAGCACTATTGTTTATTGGCCTTTTCCTTCACTTCATTAGTTCCTTGGTTTAATTTATTTATTTATTTCTGAATTAAATAATTTAAATTTCTTGTTACTTTTAATAAAGCAACAGTTTTTTCCTTGCCTTCTCTGCACAAAGTTCGGTTGAAACTTTCTGTACTTAGATTATCGTCTCTTTTCCTTGCTTTCTCATCATCCATGTTTTATCTGTAGGTTGTTGAACTTGATTTCCTCTACCCTAGTGAGGGAATCCATAGACGATGGGATAATGGTTACAGGATCACAGCAACTGCAGCTACATGGGATCAATCTGCTCTTATATTAAGCAAACCAAGGCGAAGACCTGCTGACGAAACTCAGGAAACTCTTCGGACATCTCAATTTCCAAGCACACATGTTAAGGTTAGGGTTGATAAATCAATACTTGATTTTGTTAGCTACCTTCAAAAAGTGATTTTTCTCATTGATTCTGTTTATGTTTACAGGAAAAATGGTCAAAAAACCTTTACCTTGCTTGCTTGTGCTATGGGCGTACAGTATGTTGATTCCCTTTCAGTGTTGTCAAATAGCGGCTTGTTGTAGTGTAGCGGAATTTGAACAAACCGCTATTTTCCGCGATCCGCGATGGACAACATTGTTCCCTTTACAAATGAGGGAGGGTATTTTGTTTGTACACTATATATTTTTCTACTACTCAAGTCATAATGTATAAGTTTGTGTGTAAGGCTAGATGTGCAAGATGAGAAGTGTATGTTGTTTTTTATATAGTATTGCTCTCCGCACCCCCTCTTTGGGTGGTGGATGTGGCAGTTAGTAAATGTATACATGTTATATTTGCCTCCTAACTAAATGTAGGTCTAATTTTAAAATTGTTTCGGCTACACGTGTAATGCTAATAAATAAAAAAAGAGTATTTATTTTGTATGGATACATATTTCTTTATGTATACATTATTACAATGTCCAGCATAATTTCATTGCATATGCCTAA
Protein sequence

>MS.gene91172.t1

MGDESGGLSANKGVAQEDEGNTTPFPERVQVGGSPMFKVERKLGKGGFGQVFVGRRVTGGNDRLNGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNTTGQAMSAEMVACIAVESLSILEKMHSRGYVHGDVKPENFLLGQPGTAQEKKLFLVDLGLATKWRDTSTGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSYLVCKKKMGTSPEMLCCFCPTPFRHFLEFVVNMKFDEEPNYSKLISLFDSVLGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISIYNARMPMKQRYHYNVADGRLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWEKNYYITSIAGVTNGSSLVVMSKGTQYTQQSYKVSESFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSKPRRRPADETQETLRTSQFPSTHVKHNFIAYA