AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91228

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91228.t1 MTR_5g074710 93.231 325 20 1 1 325 1 323 0.0 629
MS.gene91228.t1 MTR_5g074760 87.654 324 38 1 1 324 1 322 0.0 600
MS.gene91228.t1 MTR_5g074740 87.692 325 38 1 1 325 1 323 0.0 599
MS.gene91228.t1 MTR_5g074860 70.625 320 94 0 3 322 5 324 2.64e-171 478
MS.gene91228.t1 MTR_3g467600 64.907 322 109 3 4 323 5 324 4.47e-148 419
MS.gene91228.t1 MTR_5g074860 61.875 320 83 1 3 322 5 285 1.22e-140 399
MS.gene91228.t1 MTR_4g029170 60.308 325 123 4 1 323 1 321 6.69e-135 386
MS.gene91228.t1 MTR_4g029180 64.865 296 98 4 30 323 30 321 6.56e-131 376
MS.gene91228.t1 MTR_5g074700 78.319 226 35 1 100 325 5 216 2.89e-129 368
MS.gene91228.t1 MTR_5g074970 55.215 326 136 7 3 323 6 326 1.87e-120 349
MS.gene91228.t1 MTR_5g083860 54.403 318 137 5 9 323 13 325 2.11e-115 337
MS.gene91228.t1 MTR_3g072190 54.206 321 139 5 6 323 3 318 4.16e-115 335
MS.gene91228.t1 MTR_3g094650 54.012 324 138 6 3 323 7 322 2.12e-114 334
MS.gene91228.t1 MTR_3g466200 54.574 317 135 7 11 323 9 320 2.75e-114 333
MS.gene91228.t1 MTR_2g084080 53.481 316 141 5 9 323 7 317 1.29e-112 329
MS.gene91228.t1 MTR_2g084020 53.481 316 142 4 9 323 7 318 3.19e-111 326
MS.gene91228.t1 MTR_2g084000 53.125 320 141 6 9 323 4 319 8.58e-110 322
MS.gene91228.t1 MTR_2g084010 54.967 302 131 4 23 323 21 318 1.60e-109 322
MS.gene91228.t1 MTR_4g029200 52.941 306 138 5 19 323 38 338 1.67e-109 322
MS.gene91228.t1 MTR_2g084110 52.848 316 143 5 9 323 7 317 3.10e-109 321
MS.gene91228.t1 MTR_1g115900 50.617 324 151 6 3 323 4 321 5.51e-109 320
MS.gene91228.t1 MTR_3g094670 54.259 317 137 5 10 323 11 322 1.32e-107 317
MS.gene91228.t1 MTR_3g094630 54.890 317 135 5 10 323 11 322 1.00e-106 314
MS.gene91228.t1 MTR_7g072510 50.633 316 147 5 9 323 5 312 2.91e-106 313
MS.gene91228.t1 MTR_3g466180 51.852 324 150 4 1 323 5 323 3.19e-106 313
MS.gene91228.t1 MTR_2g084090 52.050 317 145 6 9 323 7 318 3.87e-106 313
MS.gene91228.t1 MTR_7g072480 52.381 315 143 5 10 323 8 316 1.82e-105 311
MS.gene91228.t1 MTR_4g083710 50.000 320 151 6 9 323 9 324 4.97e-105 310
MS.gene91228.t1 MTR_5g021060 53.115 305 131 5 27 323 30 330 2.14e-104 309
MS.gene91228.t1 MTR_7g026990 48.254 315 157 5 10 323 13 322 5.11e-102 302
MS.gene91228.t1 MTR_4g029190 50.495 303 141 6 25 323 43 340 7.31e-102 303
MS.gene91228.t1 MTR_8g076820 51.803 305 135 5 27 323 30 330 1.45e-101 301
MS.gene91228.t1 MTR_4g074995 48.580 317 141 7 12 323 9 308 2.01e-97 290
MS.gene91228.t1 MTR_2g028980 47.561 328 161 5 5 324 7 331 9.45e-96 288
MS.gene91228.t1 MTR_2g029560 47.302 315 155 5 17 323 14 325 1.29e-95 287
MS.gene91228.t1 MTR_4g125940 48.338 331 148 8 7 324 10 330 8.87e-94 282
MS.gene91228.t1 MTR_2g029800 50.163 307 142 5 25 323 27 330 3.41e-93 281
MS.gene91228.t1 MTR_7g093370 44.615 325 168 5 8 323 50 371 1.51e-92 280
MS.gene91228.t1 MTR_3g072190 55.686 255 107 4 70 323 2 251 1.27e-91 273
MS.gene91228.t1 MTR_2g040000 46.037 328 159 8 7 323 11 331 1.26e-90 274
MS.gene91228.t1 MTR_1g022970 46.885 305 151 4 27 323 46 347 7.65e-90 272
MS.gene91228.t1 MTR_1g054205 42.771 332 174 6 1 323 2 326 7.66e-90 271
MS.gene91228.t1 MTR_2g029815 44.954 327 169 4 5 323 7 330 1.39e-88 269
MS.gene91228.t1 MTR_2g029830 47.557 307 150 5 25 323 26 329 1.48e-88 269
MS.gene91228.t1 MTR_5g017850 47.289 332 160 9 1 323 1 326 1.75e-88 268
MS.gene91228.t1 MTR_2g029740 45.370 324 166 4 9 324 11 331 4.05e-88 268
MS.gene91228.t1 MTR_4g074990 44.582 323 152 7 8 323 3 305 1.71e-87 265
MS.gene91228.t1 MTR_5g017860 46.386 332 163 9 1 323 1 326 3.18e-87 265
MS.gene91228.t1 MTR_2g029820 46.906 307 152 4 25 323 27 330 7.90e-87 265
MS.gene91228.t1 MTR_2g029730 46.349 315 158 5 17 323 15 326 9.78e-87 264
MS.gene91228.t1 MTR_2g029860 45.603 307 156 4 25 323 27 330 1.26e-86 264
MS.gene91228.t1 MTR_4g125940 51.971 279 119 6 56 324 2 275 1.47e-86 261
MS.gene91228.t1 MTR_4g031140 43.731 327 170 5 4 323 5 324 1.55e-86 264
MS.gene91228.t1 MTR_4g030890 45.981 311 154 5 20 323 93 396 3.57e-86 265
MS.gene91228.t1 MTR_5g014100 47.267 311 145 7 27 323 26 331 3.63e-86 262
MS.gene91228.t1 MTR_2g029750 44.848 330 171 5 3 324 5 331 3.69e-86 263
MS.gene91228.t1 MTR_4g122640 45.215 303 156 5 27 323 38 336 3.09e-85 260
MS.gene91228.t1 MTR_5g049280 46.104 308 152 8 27 323 33 337 7.06e-84 257
MS.gene91228.t1 MTR_2g029910 44.839 310 159 6 25 325 28 334 7.30e-82 252
MS.gene91228.t1 MTR_4g074980 43.210 324 153 8 1 323 1 294 3.44e-81 248
MS.gene91228.t1 MTR_2g029850 44.951 307 158 4 25 323 27 330 5.04e-80 247
MS.gene91228.t1 MTR_1g101830 43.949 314 159 10 18 323 18 322 5.27e-77 239
MS.gene91228.t1 MTR_3g092990 40.426 329 180 7 4 323 5 326 4.54e-76 236
MS.gene91228.t1 MTR_1g077000 41.611 298 164 7 27 323 39 327 5.83e-75 234
MS.gene91228.t1 MTR_1g086490 40.120 334 179 6 9 325 13 342 5.48e-74 231
MS.gene91228.t1 MTR_1g086320 39.385 325 183 5 9 323 13 333 2.87e-73 229
MS.gene91228.t1 MTR_7g107520 41.641 329 173 8 4 323 2 320 2.29e-72 227
MS.gene91228.t1 MTR_4g074980 45.736 258 130 6 1 253 1 253 9.05e-72 223
MS.gene91228.t1 MTR_1g038680 40.594 303 167 6 31 323 33 332 1.82e-71 225
MS.gene91228.t1 MTR_4g046713 39.755 327 182 8 6 323 6 326 2.38e-71 224
MS.gene91228.t1 MTR_2g088770 39.759 332 182 10 1 323 3 325 3.83e-71 224
MS.gene91228.t1 MTR_0155s0040 40.000 300 170 8 25 323 25 315 7.54e-71 223
MS.gene91228.t1 MTR_2g029830 47.490 259 125 5 73 323 6 261 4.34e-70 220
MS.gene91228.t1 MTR_5g022870 40.798 326 165 10 13 323 4 316 1.58e-66 211
MS.gene91228.t1 MTR_6g027440 37.812 320 186 7 9 323 3 314 4.17e-66 211
MS.gene91228.t1 MTR_1g025980 39.441 322 173 9 9 322 10 317 1.15e-65 209
MS.gene91228.t1 MTR_8g075100 40.909 308 159 9 26 323 25 319 1.38e-65 209
MS.gene91228.t1 MTR_4g133800 38.261 345 174 12 7 325 4 335 1.16e-64 207
MS.gene91228.t1 MTR_3g092990 38.298 329 176 8 4 323 5 315 1.20e-64 207
MS.gene91228.t1 MTR_7g029030 39.557 316 180 7 13 323 11 320 2.31e-63 204
MS.gene91228.t1 MTR_2g008710 38.182 330 180 10 8 323 6 325 2.34e-63 204
MS.gene91228.t1 MTR_2g437770 41.615 322 157 11 18 323 35 341 1.90e-62 202
MS.gene91228.t1 MTR_5g016010 37.500 328 186 8 6 319 3 325 7.82e-60 195
MS.gene91228.t1 MTR_7g086820 37.255 306 176 8 25 324 18 313 1.09e-59 194
MS.gene91228.t1 MTR_8g062780 37.576 330 189 8 7 325 3 326 2.59e-59 193
MS.gene91228.t1 MTR_1g009750 37.910 335 183 11 3 323 5 328 6.07e-59 192
MS.gene91228.t1 MTR_4g095450 38.080 323 183 8 8 319 4 320 1.20e-58 191
MS.gene91228.t1 MTR_7g086870 36.877 301 179 8 25 323 20 311 3.64e-58 190
MS.gene91228.t1 MTR_4g087965 39.739 307 167 9 26 319 41 342 4.19e-58 191
MS.gene91228.t1 MTR_1g090760 34.347 329 200 7 8 325 9 332 1.09e-57 189
MS.gene91228.t1 MTR_4g127670 39.744 312 161 10 27 323 24 323 2.14e-57 188
MS.gene91228.t1 MTR_4g114210 36.170 329 182 10 8 323 7 320 1.29e-56 186
MS.gene91228.t1 MTR_3g072210 47.727 220 108 5 106 323 24 238 1.45e-55 181
MS.gene91228.t1 MTR_2g099175 34.302 344 193 11 4 324 3 336 3.20e-52 175
MS.gene91228.t1 MTR_6g043280 35.855 304 182 10 24 323 38 332 3.72e-52 175
MS.gene91228.t1 MTR_2g078610 34.911 338 174 9 25 322 74 405 3.99e-52 177
MS.gene91228.t1 MTR_2g077990 35.503 338 172 10 25 322 74 405 1.58e-51 175
MS.gene91228.t1 MTR_2g067440 34.524 336 175 9 25 322 58 386 9.45e-51 173
MS.gene91228.t1 MTR_2g008160 36.538 312 175 10 25 323 22 323 1.63e-50 171
MS.gene91228.t1 MTR_1g066710 35.294 306 184 7 25 323 25 323 1.81e-50 170
MS.gene91228.t1 MTR_0286s0010 33.951 324 196 9 12 323 17 334 3.68e-50 170
MS.gene91228.t1 MTR_6g008075 33.951 324 196 9 12 323 17 334 3.68e-50 170
MS.gene91228.t1 MTR_3g105790 35.077 325 192 6 9 323 7 322 5.44e-49 166
MS.gene91228.t1 MTR_6g043240 34.650 329 191 11 8 323 14 331 4.18e-48 165
MS.gene91228.t1 MTR_1g066380 33.550 307 190 7 24 323 24 323 5.67e-48 164
MS.gene91228.t1 MTR_1g066640 33.660 306 189 7 25 323 25 323 1.64e-47 162
MS.gene91228.t1 MTR_1g009750 35.135 333 178 11 3 323 5 311 2.85e-47 162
MS.gene91228.t1 MTR_2g078280 36.000 325 162 10 25 309 74 392 3.52e-47 164
MS.gene91228.t1 MTR_1g066680 33.660 306 188 8 25 323 25 322 5.61e-46 159
MS.gene91228.t1 MTR_6g043460 33.555 301 190 7 22 319 31 324 1.04e-45 159
MS.gene91228.t1 MTR_7g072490 42.449 245 81 7 73 316 2 187 1.63e-45 154
MS.gene91228.t1 MTR_2g008730 33.841 328 169 10 10 323 8 301 1.67e-45 157
MS.gene91228.t1 MTR_5g033470 31.731 312 195 8 25 323 71 377 6.33e-45 157
MS.gene91228.t1 MTR_4g132490 29.605 304 202 5 27 323 29 327 2.54e-44 154
MS.gene91228.t1 MTR_3g072260 56.923 130 54 2 7 135 5 133 4.44e-44 148
MS.gene91228.t1 MTR_4g132110 32.237 304 194 6 27 324 32 329 9.41e-43 150
MS.gene91228.t1 MTR_0147s0010 31.173 324 176 8 27 322 77 381 1.77e-42 151
MS.gene91228.t1 MTR_2g067450 33.438 320 172 10 25 322 9 309 6.68e-41 145
MS.gene91228.t1 MTR_4g132110 31.715 309 194 7 27 324 32 334 2.73e-40 144
MS.gene91228.t1 MTR_2g008160 33.987 306 156 10 25 323 22 288 3.83e-39 140
MS.gene91228.t1 MTR_2g029880 41.117 197 100 3 136 325 3 190 2.12e-38 135
MS.gene91228.t1 MTR_5g074770 57.143 112 43 1 211 322 2 108 2.21e-38 132
MS.gene91228.t1 MTR_2g008160 41.808 177 96 5 25 201 22 191 4.02e-37 132
MS.gene91228.t1 MTR_1g066380 31.923 260 163 7 71 323 3 255 5.72e-35 128
MS.gene91228.t1 MTR_3g105790 36.250 240 138 5 94 323 12 246 2.09e-31 118
MS.gene91228.t1 MTR_3g462850 39.007 141 75 5 194 323 9 149 6.32e-20 85.1
MS.gene91228.t1 MTR_1g089005 41.667 120 62 3 27 140 15 132 2.91e-19 83.6
MS.gene91228.t1 MTR_4g031040 34.320 169 72 3 86 254 1 130 1.13e-18 81.3
MS.gene91228.t1 MTR_6g048160 52.055 73 30 3 66 138 22 89 1.53e-17 77.0
MS.gene91228.t1 MTR_3g086710 59.322 59 24 0 14 72 6 64 1.04e-16 74.7
MS.gene91228.t1 MTR_4g114220 35.294 119 64 4 53 169 29 136 1.06e-16 76.3
MS.gene91228.t1 MTR_5g058120 30.323 155 103 2 165 319 6 155 5.14e-15 73.9
MS.gene91228.t1 MTR_2g029930 40.217 92 30 2 25 105 17 94 1.23e-14 69.3
MS.gene91228.t1 MTR_7g086790 29.787 188 113 7 74 260 17 186 4.81e-14 70.1
MS.gene91228.t1 MTR_4g073410 29.457 258 120 12 61 305 35 243 1.35e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91228.t1 AT5G05340 53.974 302 131 5 25 323 28 324 3.90e-111 326
MS.gene91228.t1 AT2G18150 47.941 340 155 6 3 324 2 337 1.69e-106 315
MS.gene91228.t1 AT1G14550 50.464 323 153 6 4 323 3 321 9.84e-104 307
MS.gene91228.t1 AT2G18140 48.225 338 154 6 3 323 2 335 3.52e-103 306
MS.gene91228.t1 AT5G58390 52.516 318 142 6 10 323 4 316 4.78e-101 300
MS.gene91228.t1 AT5G58400 48.148 324 156 7 4 323 10 325 2.23e-99 296
MS.gene91228.t1 AT5G66390 50.654 306 139 5 27 324 33 334 6.45e-99 295
MS.gene91228.t1 AT4G36430 49.836 305 141 5 27 323 30 330 1.91e-97 291
MS.gene91228.t1 AT1G14540 47.022 319 161 6 9 323 1 315 2.75e-96 288
MS.gene91228.t1 AT1G44970 49.837 307 143 5 25 323 43 346 1.10e-95 287
MS.gene91228.t1 AT5G06720 44.136 324 170 4 8 323 13 333 5.32e-94 283
MS.gene91228.t1 AT3G50990 46.795 312 154 5 21 324 35 342 9.29e-93 280
MS.gene91228.t1 AT4G08770 48.544 309 146 6 25 323 22 327 1.26e-91 277
MS.gene91228.t1 AT5G06730 42.769 325 175 4 7 323 13 334 7.88e-90 273
MS.gene91228.t1 AT3G32980 47.573 309 149 6 25 323 29 334 4.05e-89 271
MS.gene91228.t1 AT4G08780 47.573 309 149 6 25 323 22 327 1.25e-88 269
MS.gene91228.t1 AT5G19890 45.732 328 157 10 8 324 11 328 3.36e-88 268
MS.gene91228.t1 AT2G38390 47.403 308 150 5 25 323 29 333 4.43e-88 268
MS.gene91228.t1 AT3G49110 46.926 309 151 6 25 323 31 336 1.06e-87 267
MS.gene91228.t1 AT3G49120 46.326 313 155 6 21 323 26 335 2.31e-87 266
MS.gene91228.t1 AT2G38380 47.078 308 151 5 25 323 29 333 4.44e-86 263
MS.gene91228.t1 AT1G49570 46.906 307 147 8 24 319 45 346 8.60e-84 257
MS.gene91228.t1 AT2G35380 43.844 333 170 6 4 323 7 335 1.49e-83 256
MS.gene91228.t1 AT4G16270 47.508 301 142 8 32 323 55 348 2.50e-83 256
MS.gene91228.t1 AT5G51890 44.615 325 160 11 10 323 7 322 4.81e-81 249
MS.gene91228.t1 AT2G22420 40.923 325 174 8 8 324 6 320 7.33e-81 249
MS.gene91228.t1 AT1G68850 44.013 309 158 8 27 323 30 335 5.85e-80 247
MS.gene91228.t1 AT1G71695 43.182 308 164 7 21 323 38 339 3.23e-78 243
MS.gene91228.t1 AT3G01190 44.079 304 155 7 27 323 26 321 3.09e-76 237
MS.gene91228.t1 AT5G15180 42.105 323 174 6 8 323 13 329 4.30e-75 234
MS.gene91228.t1 AT5G19880 41.945 329 169 8 9 323 9 329 2.59e-74 232
MS.gene91228.t1 AT1G05240 43.000 300 154 7 30 319 29 321 4.44e-73 229
MS.gene91228.t1 AT1G05250 43.000 300 154 7 30 319 29 321 4.44e-73 229
MS.gene91228.t1 AT5G42180 41.925 322 163 10 9 322 11 316 3.69e-71 223
MS.gene91228.t1 AT3G03670 37.462 331 185 9 4 323 2 321 3.79e-69 218
MS.gene91228.t1 AT4G11290 38.973 331 182 10 6 323 3 326 4.89e-69 218
MS.gene91228.t1 AT4G33420 40.940 298 166 7 27 323 37 325 8.32e-69 218
MS.gene91228.t1 AT4G33420 40.940 298 166 7 27 323 84 372 4.50e-68 217
MS.gene91228.t1 AT5G64120 40.373 322 175 8 9 323 17 328 9.95e-68 215
MS.gene91228.t1 AT3G21770 40.323 310 170 8 19 319 21 324 8.47e-67 213
MS.gene91228.t1 AT1G05260 38.095 315 180 8 19 324 18 326 1.03e-66 213
MS.gene91228.t1 AT5G17820 36.778 329 180 10 3 323 5 313 9.56e-62 199
MS.gene91228.t1 AT1G30870 41.234 308 157 11 27 323 51 345 3.43e-61 199
MS.gene91228.t1 AT5G17820 38.111 307 167 9 25 323 75 366 6.29e-61 199
MS.gene91228.t1 AT5G40150 36.624 314 189 6 15 323 20 328 6.60e-60 195
MS.gene91228.t1 AT2G41480 36.858 331 184 10 8 323 8 328 2.47e-59 193
MS.gene91228.t1 AT4G26010 37.134 307 179 10 20 323 14 309 3.86e-59 192
MS.gene91228.t1 AT4G26010 37.134 307 179 10 20 323 42 337 6.45e-59 192
MS.gene91228.t1 AT5G64100 36.095 338 184 10 7 323 5 331 9.73e-59 192
MS.gene91228.t1 AT3G28200 36.634 303 183 6 25 323 19 316 1.75e-58 191
MS.gene91228.t1 AT4G17690 37.898 314 183 7 18 325 17 324 1.88e-58 191
MS.gene91228.t1 AT2G35380 45.200 250 120 6 87 323 2 247 2.10e-58 188
MS.gene91228.t1 AT5G22410 35.548 301 173 9 31 320 32 322 6.35e-58 190
MS.gene91228.t1 AT5G47000 36.196 326 194 8 8 325 13 332 1.03e-57 189
MS.gene91228.t1 AT5G64110 38.973 331 177 11 7 323 11 330 1.27e-57 189
MS.gene91228.t1 AT5G39580 39.203 301 165 9 31 323 29 319 1.28e-57 189
MS.gene91228.t1 AT4G37530 38.339 313 171 8 25 323 25 329 3.92e-57 188
MS.gene91228.t1 AT1G24110 36.562 320 185 8 16 323 9 322 9.49e-57 187
MS.gene91228.t1 AT1G34510 35.759 316 192 9 9 323 4 309 3.52e-56 185
MS.gene91228.t1 AT5G67400 38.182 330 182 10 9 323 7 329 1.79e-55 184
MS.gene91228.t1 AT2G39040 38.585 311 171 8 27 323 46 350 5.60e-55 183
MS.gene91228.t1 AT2G18980 36.686 338 184 12 1 323 1 323 6.55e-55 182
MS.gene91228.t1 AT4G30170 38.264 311 170 10 25 323 25 325 7.19e-54 179
MS.gene91228.t1 AT4G31760 35.241 332 192 9 4 323 6 326 1.99e-53 178
MS.gene91228.t1 AT3G49960 37.538 333 180 12 10 323 6 329 2.35e-53 178
MS.gene91228.t1 AT2G34060 35.777 341 190 11 3 320 9 343 4.61e-53 178
MS.gene91228.t1 AT4G37520 35.987 314 177 7 25 323 25 329 1.31e-52 176
MS.gene91228.t1 AT4G33870 32.938 337 175 9 30 322 71 400 1.50e-52 178
MS.gene91228.t1 AT1G77100 36.061 330 188 12 5 323 2 319 2.28e-51 172
MS.gene91228.t1 AT4G25980 33.634 333 199 9 2 323 5 326 2.79e-51 172
MS.gene91228.t1 AT5G14130 35.220 318 184 8 18 323 23 330 5.63e-51 172
MS.gene91228.t1 AT2G24800 36.943 314 172 9 24 323 28 329 6.10e-51 172
MS.gene91228.t1 AT5G14130 35.220 318 184 8 18 323 64 371 1.09e-50 172
MS.gene91228.t1 AT4G37520 35.669 314 175 8 25 323 25 326 1.41e-50 171
MS.gene91228.t1 AT4G37530 38.846 260 139 7 25 270 25 278 8.74e-48 162
MS.gene91228.t1 AT2G43480 32.298 322 192 10 17 323 25 335 1.10e-46 161
MS.gene91228.t1 AT5G24070 33.846 325 188 11 14 323 23 335 1.45e-46 160
MS.gene91228.t1 AT2G37130 33.667 300 188 6 30 323 2 296 1.36e-44 154
MS.gene91228.t1 AT2G37130 33.443 305 192 6 25 323 28 327 2.66e-44 154
MS.gene91228.t1 AT3G17070 31.715 309 192 8 27 323 38 339 3.46e-44 154
MS.gene91228.t1 AT4G21960 31.579 304 196 6 27 324 31 328 1.80e-42 150
MS.gene91228.t1 AT4G25980 41.899 179 97 5 23 201 67 238 1.22e-37 136
MS.gene91228.t1 AT5G39580 41.379 174 94 5 31 204 29 194 2.95e-32 120
MS.gene91228.t1 AT2G24800 40.698 172 95 3 24 195 28 192 3.82e-30 115
MS.gene91228.t1 AT3G17070 28.470 281 181 9 55 323 4 276 3.31e-29 113
MS.gene91228.t1 AT4G35000 27.344 256 128 10 61 305 34 242 1.37e-11 64.7

Find 47 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGAACAACTAAGTCTTTA+AGG 0.059473 5.1:+57355800 None:intergenic
TAAGGCTTTGTTGCATAAAA+AGG 0.123833 5.1:-57355599 MS.gene91228:CDS
CCTCTAAGTGAATTGATATT+TGG 0.168385 5.1:+57356517 None:intergenic
TATTCTTCTTCATTCATATT+TGG 0.210525 5.1:+57355389 None:intergenic
CCAAATATCAATTCACTTAG+AGG 0.217536 5.1:-57356517 MS.gene91228:CDS
TTGCAAATGGGCTGCATAAT+TGG 0.262012 5.1:+57355702 None:intergenic
AAAGACTTAGTTGTTCTATC+AGG 0.308669 5.1:-57355796 MS.gene91228:CDS
GTCTTTAAGGTTTAGTCCTT+GGG 0.314864 5.1:+57355813 None:intergenic
AGTTGGGTGGTCACAAATAT+TGG 0.366291 5.1:-57355948 MS.gene91228:CDS
TTAACAACTGACTTTATGAT+TGG 0.366348 5.1:+57357160 None:intergenic
GGTAACATAAAGCCACTTAC+TGG 0.367876 5.1:-57355451 MS.gene91228:CDS
AGTCTTTAAGGTTTAGTCCT+TGG 0.380171 5.1:+57355812 None:intergenic
CAAAAGGCATGCCCTCGAAT+TGG 0.405243 5.1:-57355682 MS.gene91228:CDS
GTGAGATCAGGTGCAATTGC+AGG 0.409083 5.1:-57355420 MS.gene91228:CDS
AGTTGACACAAAATACTATA+AGG 0.410019 5.1:-57355617 MS.gene91228:CDS
CTATCAGGTGGTCACACAAT+TGG 0.412653 5.1:-57355781 MS.gene91228:CDS
TTTATGATTGGCAATGCCTT+AGG 0.413524 5.1:+57357172 None:intergenic
GATGACACCCCTACCTTCAT+TGG 0.418695 5.1:-57356556 MS.gene91228:CDS
TGCATAATTGGTGTCTATGC+TGG 0.422494 5.1:+57355714 None:intergenic
TGGAGTTTCTATGATTAAGA+TGG 0.424465 5.1:-57355473 MS.gene91228:CDS
TATTGGTACCAAGTGTTACT+AGG 0.439781 5.1:-57355931 MS.gene91228:CDS
GGAGTTTCTATGATTAAGAT+GGG 0.461747 5.1:-57355472 MS.gene91228:CDS
TTATGACAAAATTTGTCCTA+AGG 0.469907 5.1:-57357188 MS.gene91228:CDS
CTCTTCTTCCTAGTAACACT+TGG 0.476428 5.1:+57355923 None:intergenic
ATATCTGCACATGATATGAT+AGG 0.478245 5.1:+57356442 None:intergenic
TGCAGTCTTCTCACCAATGA+AGG 0.489963 5.1:+57356543 None:intergenic
CTTGAAGGAGTAGAATCAAA+TGG 0.501343 5.1:+57355640 None:intergenic
AAGGCATGCCCTCGAATTGG+CGG 0.502746 5.1:-57355679 MS.gene91228:CDS
TTATGCAGCCCATTTGCAAA+AGG 0.509133 5.1:-57355698 MS.gene91228:CDS
TTGTCATCGCCGCCAATTCG+AGG 0.516204 5.1:+57355670 None:intergenic
GACTTAGTTGTTCTATCAGG+TGG 0.517937 5.1:-57355793 MS.gene91228:CDS
TCTTCTCACCAATGAAGGTA+GGG 0.536322 5.1:+57356548 None:intergenic
AAAGCTCTTGATCAGAATGA+AGG 0.549289 5.1:+57355572 None:intergenic
GATGCACTAAGTTTAGAGAC+AGG 0.558230 5.1:-57355750 MS.gene91228:CDS
AATTATTCGTGAGCCACGCA+TGG 0.561525 5.1:-57357131 MS.gene91228:CDS
TGGTTCTCAAAGTGATAGAT+TGG 0.568189 5.1:-57355539 MS.gene91228:CDS
GTAACATAAAGCCACTTACT+GGG 0.585077 5.1:-57355450 MS.gene91228:CDS
GTCTTCTCACCAATGAAGGT+AGG 0.586272 5.1:+57356547 None:intergenic
GTGAAACTACAGGGTTGTGA+TGG 0.586550 5.1:-57356592 MS.gene91228:intron
TGTCATCGCCGCCAATTCGA+GGG 0.587668 5.1:+57355671 None:intergenic
TGCATCAATTAACAGTTGGG+TGG 0.588816 5.1:-57355961 MS.gene91228:intron
AGCAACGATGCTCCCATGCG+TGG 0.600639 5.1:+57357118 None:intergenic
ATTATTCGTGAGCCACGCAT+GGG 0.612352 5.1:-57357130 MS.gene91228:CDS
CTTCTCACCAATGAAGGTAG+GGG 0.615489 5.1:+57356549 None:intergenic
ATTAGGAGTGAGATTTGCAA+CGG 0.615865 5.1:+57357213 None:intergenic
GGAGTGAGATTTGCAACGGT+AGG 0.629918 5.1:+57357217 None:intergenic
TTTACAAGCTTTGTCGACAG+CGG 0.657875 5.1:+57356468 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATATTAATTATACTATAA+TGG + chr5.1:57356063-57356082 None:intergenic 10.0%
!! TAAAAATCACAAGATAATAT+TGG + chr5.1:57355419-57355438 None:intergenic 15.0%
!!! ATACAAATTTTGAATACAAA+AGG + chr5.1:57355958-57355977 None:intergenic 15.0%
!!! ATATTATCTTGTGATTTTTA+TGG - chr5.1:57355419-57355438 MS.gene91228:CDS 15.0%
!!! CAAATTTTGTCATAATAATT+AGG + chr5.1:57355489-57355508 None:intergenic 15.0%
!!! CTATAATTTCTAAAATTGTA+TGG - chr5.1:57356564-57356583 MS.gene91228:CDS 15.0%
!! AAATTATAGTTGCAACATAT+TGG + chr5.1:57356310-57356329 None:intergenic 20.0%
!!! AGAAACCTAATTTATTTTTC+CGG + chr5.1:57355873-57355892 None:intergenic 20.0%
!!! CTTGATAGTTCTTAATAATT+TGG - chr5.1:57356402-57356421 MS.gene91228:intron 20.0%
! AATTACATTGCGATTACAAT+TGG + chr5.1:57356504-57356523 None:intergenic 25.0%
! AGCTAAAAAAAGTTGAATTG+TGG - chr5.1:57355847-57355866 MS.gene91228:CDS 25.0%
! AGTTGACACAAAATACTATA+AGG - chr5.1:57357065-57357084 MS.gene91228:intron 25.0%
! ATAGAACAACTAAGTCTTTA+AGG + chr5.1:57356885-57356904 None:intergenic 25.0%
! ATGAAATCATAAAGACTTAG+TGG - chr5.1:57356670-57356689 MS.gene91228:intron 25.0%
! CATATTGGAAATACTTACTA+TGG + chr5.1:57356295-57356314 None:intergenic 25.0%
! TTATGACAAAATTTGTCCTA+AGG - chr5.1:57355494-57355513 MS.gene91228:CDS 25.0%
! TTCAAACACTTCTGTTATTA+TGG - chr5.1:57356533-57356552 MS.gene91228:CDS 25.0%
!! AGCTATAAGAAAAAAGTACA+TGG + chr5.1:57355674-57355693 None:intergenic 25.0%
!! ATTTTGCATCAATTAACAGT+TGG - chr5.1:57356717-57356736 MS.gene91228:intron 25.0%
!! TTAACAACTGACTTTATGAT+TGG + chr5.1:57355525-57355544 None:intergenic 25.0%
!! TTTTATATTGTGGTAAAGTG+CGG + chr5.1:57356336-57356355 None:intergenic 25.0%
!! TTTTGCATCAATTAACAGTT+GGG - chr5.1:57356718-57356737 MS.gene91228:intron 25.0%
AAAAAAAGTTGAATTGTGGC+CGG - chr5.1:57355851-57355870 MS.gene91228:CDS 30.0%
AAAGACTTAGTTGTTCTATC+AGG - chr5.1:57356886-57356905 MS.gene91228:intron 30.0%
ATATCTGCACATGATATGAT+AGG + chr5.1:57356243-57356262 None:intergenic 30.0%
CCAAATATCAATTCACTTAG+AGG - chr5.1:57356165-57356184 MS.gene91228:intron 30.0%
CCTCTAAGTGAATTGATATT+TGG + chr5.1:57356168-57356187 None:intergenic 30.0%
GATATTACAAAAACTTCGAG+AGG - chr5.1:57356460-57356479 MS.gene91228:CDS 30.0%
GGAGTTTCTATGATTAAGAT+GGG - chr5.1:57357210-57357229 MS.gene91228:CDS 30.0%
TGGAGTTTCTATGATTAAGA+TGG - chr5.1:57357209-57357228 MS.gene91228:CDS 30.0%
TGTGAGAAGTTAAAAAATGC+TGG + chr5.1:57356829-57356848 None:intergenic 30.0%
! CATGCTTTTGCTTATGATTT+TGG - chr5.1:57357189-57357208 MS.gene91228:CDS 30.0%
! CGCTGTAAACTTTTATATTG+TGG + chr5.1:57356346-57356365 None:intergenic 30.0%
! TATTTTGTGTCAACTCTTGA+AGG + chr5.1:57357060-57357079 None:intergenic 30.0%
! TCAAGCGTGATTTTAAATTG+CGG + chr5.1:57356387-57356406 None:intergenic 30.0%
!! AAGGCTTTGTTGCATAAAAA+GGG - chr5.1:57357084-57357103 MS.gene91228:intron 30.0%
!! TAAGGCTTTGTTGCATAAAA+AGG - chr5.1:57357083-57357102 MS.gene91228:intron 30.0%
AAAGCTCTTGATCAGAATGA+AGG + chr5.1:57357113-57357132 None:intergenic 35.0%
ACATTGCGATTACAATTGGA+GGG + chr5.1:57356500-57356519 None:intergenic 35.0%
ATTAGGAGTGAGATTTGCAA+CGG + chr5.1:57355472-57355491 None:intergenic 35.0%
CTGAACTATGTGAAACTACA+GGG - chr5.1:57356081-57356100 MS.gene91228:intron 35.0%
CTTGAAGGAGTAGAATCAAA+TGG + chr5.1:57357045-57357064 None:intergenic 35.0%
GAGAAGTTAAAAAATGCTGG+TGG + chr5.1:57356826-57356845 None:intergenic 35.0%
GTAACATAAAGCCACTTACT+GGG - chr5.1:57357232-57357251 MS.gene91228:CDS 35.0%
TACATTGCGATTACAATTGG+AGG + chr5.1:57356501-57356520 None:intergenic 35.0%
TCTGAACTATGTGAAACTAC+AGG - chr5.1:57356080-57356099 MS.gene91228:intron 35.0%
TGGTTCTCAAAGTGATAGAT+TGG - chr5.1:57357143-57357162 MS.gene91228:CDS 35.0%
TGTGGCCGGAAAAATAAATT+AGG - chr5.1:57355865-57355884 MS.gene91228:CDS 35.0%
TTTATGATTGGCAATGCCTT+AGG + chr5.1:57355513-57355532 None:intergenic 35.0%
! ATCACAAATTTTCAGTCCCA+AGG - chr5.1:57356853-57356872 MS.gene91228:intron 35.0%
! CAAGCGTGATTTTAAATTGC+GGG + chr5.1:57356386-57356405 None:intergenic 35.0%
! CAATTCACTTAGAGGTTTTG+AGG - chr5.1:57356173-57356192 MS.gene91228:intron 35.0%
! TATTGGTACCAAGTGTTACT+AGG - chr5.1:57356751-57356770 MS.gene91228:intron 35.0%
! TCTGATCAAGAGCTTTTCAA+AGG - chr5.1:57357117-57357136 MS.gene91228:CDS 35.0%
!! AGTCTTTAAGGTTTAGTCCT+TGG + chr5.1:57356873-57356892 None:intergenic 35.0%
!! GTCTTTAAGGTTTAGTCCTT+GGG + chr5.1:57356872-57356891 None:intergenic 35.0%
AAGCCACTTACTGGGAAAAA+TGG - chr5.1:57357240-57357259 MS.gene91228:CDS 40.0%
AGTTGGGTGGTCACAAATAT+TGG - chr5.1:57356734-57356753 MS.gene91228:intron 40.0%
CTCTTCTTCCTAGTAACACT+TGG + chr5.1:57356762-57356781 None:intergenic 40.0%
GACTTAGTTGTTCTATCAGG+TGG - chr5.1:57356889-57356908 MS.gene91228:intron 40.0%
GATGCACTAAGTTTAGAGAC+AGG - chr5.1:57356932-57356951 MS.gene91228:intron 40.0%
GGTAACATAAAGCCACTTAC+TGG - chr5.1:57357231-57357250 MS.gene91228:CDS 40.0%
TACATGAAATCCACCTGTAG+AGG + chr5.1:57355913-57355932 None:intergenic 40.0%
TCTTCTCACCAATGAAGGTA+GGG + chr5.1:57356137-57356156 None:intergenic 40.0%
TGCATCAATTAACAGTTGGG+TGG - chr5.1:57356721-57356740 MS.gene91228:intron 40.0%
TTATGCAGCCCATTTGCAAA+AGG - chr5.1:57356984-57357003 MS.gene91228:intron 40.0%
! CAAGAGCTTTTCAAAGGTGA+TGG - chr5.1:57357123-57357142 MS.gene91228:CDS 40.0%
! TGCATAATTGGTGTCTATGC+TGG + chr5.1:57356971-57356990 None:intergenic 40.0%
! TTTACAAGCTTTGTCGACAG+CGG + chr5.1:57356217-57356236 None:intergenic 40.0%
!! TCAACTTGGTTGATGAGCTA+AGG + chr5.1:57355760-57355779 None:intergenic 40.0%
!! TCACCATTTTTCCCAGTAAG+TGG + chr5.1:57357246-57357265 None:intergenic 40.0%
!! TTGCAAATGGGCTGCATAAT+TGG + chr5.1:57356983-57357002 None:intergenic 40.0%
AATTATTCGTGAGCCACGCA+TGG - chr5.1:57355551-57355570 MS.gene91228:CDS 45.0%
ATTATTCGTGAGCCACGCAT+GGG - chr5.1:57355552-57355571 MS.gene91228:CDS 45.0%
CTATCAGGTGGTCACACAAT+TGG - chr5.1:57356901-57356920 MS.gene91228:intron 45.0%
CTGGGAAAAATGGTGAGATC+AGG - chr5.1:57357250-57357269 MS.gene91228:CDS 45.0%
CTTCTCACCAATGAAGGTAG+GGG + chr5.1:57356136-57356155 None:intergenic 45.0%
GTCTTCTCACCAATGAAGGT+AGG + chr5.1:57356138-57356157 None:intergenic 45.0%
GTGAAACTACAGGGTTGTGA+TGG - chr5.1:57356090-57356109 MS.gene91228:intron 45.0%
TCCATTTCACGCGTTCAACT+TGG + chr5.1:57355774-57355793 None:intergenic 45.0%
TGCAGTCTTCTCACCAATGA+AGG + chr5.1:57356142-57356161 None:intergenic 45.0%
! ACCAAGTTGAACGCGTGAAA+TGG - chr5.1:57355770-57355789 MS.gene91228:CDS 45.0%
! AGGGCATGCCTTTTGCAAAT+GGG + chr5.1:57356995-57357014 None:intergenic 45.0%
AATCCACCTGTAGAGGCTAG+AGG + chr5.1:57355906-57355925 None:intergenic 50.0%
GATGACACCCCTACCTTCAT+TGG - chr5.1:57356126-57356145 MS.gene91228:intron 50.0%
GGAGTGAGATTTGCAACGGT+AGG + chr5.1:57355468-57355487 None:intergenic 50.0%
GTGAGATCAGGTGCAATTGC+AGG - chr5.1:57357262-57357281 MS.gene91228:CDS 50.0%
TTTGCACCTCTAGCCTCTAC+AGG - chr5.1:57355897-57355916 MS.gene91228:CDS 50.0%
! CAAAAGGCATGCCCTCGAAT+TGG - chr5.1:57357000-57357019 MS.gene91228:intron 50.0%
!! GAGGGCATGCCTTTTGCAAA+TGG + chr5.1:57356996-57357015 None:intergenic 50.0%
AAGGCATGCCCTCGAATTGG+CGG - chr5.1:57357003-57357022 MS.gene91228:intron 55.0%
TGTCATCGCCGCCAATTCGA+GGG + chr5.1:57357014-57357033 None:intergenic 55.0%
TTGTCATCGCCGCCAATTCG+AGG + chr5.1:57357015-57357034 None:intergenic 55.0%
AGCAACGATGCTCCCATGCG+TGG + chr5.1:57355567-57355586 None:intergenic 60.0%
GCACCTCTAGCCTCTACAGG+TGG - chr5.1:57355900-57355919 MS.gene91228:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 57355402 57357302 57355402 ID=MS.gene91228
chr5.1 mRNA 57355402 57357302 57355402 ID=MS.gene91228.t1;Parent=MS.gene91228
chr5.1 exon 57357087 57357302 57357087 ID=MS.gene91228.t1.exon1;Parent=MS.gene91228.t1
chr5.1 CDS 57357087 57357302 57357087 ID=cds.MS.gene91228.t1;Parent=MS.gene91228.t1
chr5.1 exon 57356408 57356602 57356408 ID=MS.gene91228.t1.exon2;Parent=MS.gene91228.t1
chr5.1 CDS 57356408 57356602 57356408 ID=cds.MS.gene91228.t1;Parent=MS.gene91228.t1
chr5.1 exon 57355402 57355968 57355402 ID=MS.gene91228.t1.exon3;Parent=MS.gene91228.t1
chr5.1 CDS 57355402 57355968 57355402 ID=cds.MS.gene91228.t1;Parent=MS.gene91228.t1
Gene Sequence

>MS.gene91228

ATGGATTCTCGTATCCAATATTATCTTGTGATTTTTATGGTCACTTTCGCAACAATTTTGAGTCCTACCGTTGCAAATCTCACTCCTAATTATTATGACAAAATTTGTCCTAAGGCATTGCCAATCATAAAGTCAGTTGTTAAGCAAGCAATTATTCGTGAGCCACGCATGGGAGCATCGTTGCTTCGCTTGCATTTTCATGACTGCTTTGTTAACGTGAGTTAATTGCATAAATTTGCAATATATTTTTTAGTGTTATTAAATAGAATCCATGTACTTTTTTCTTATAGCTAAAAATGTTAGTAAGTTGATGTTTATGTTAATCTTCAGTGTTTGAACTTCGTCATTCGACATTCCTTAGCTCATCAACCAAGTTGAACGCGTGAAATGGAGAAAGATTCATTGTTCTTTTTTTGCACGTCATAATTCTAATAACGTATATTATAGCTAAAAAAAGTTGAATTGTGGCCGGAAAAATAAATTAGGTTTCTGATTTTTGCACCTCTAGCCTCTACAGGTGGATTTCATGTAGTACTCATACTAAAATATTGTTCCTTTTGTATTCAAAATTTGTATTTCTATATTAATTTCAAACTTATTTTGAGTTCAATTATAGTTTTTGCATCATATTCATGTCACAATTACATATGAATAATTTCCATTATAGTATAATTAATATCTGAACTATGTGAAACTACAGGGTTGTGATGGATCAGTTCTACTAGATGACACCCCTACCTTCATTGGTGAGAAGACTGCAATTCCAAATATCAATTCACTTAGAGGTTTTGAGGTTGTTGATCAAATTAAAGCCGCTGTCGACAAAGCTTGTAAACGTCCTATCATATCATGTGCAGATATCTTAGCGATAGCAGCTCGAGATTCTGTTGCCATAGTAAGTATTTCCAATATGTTGCAACTATAATTTTGACCGCACTTTACCACAATATAAAAGTTTACAGCGTAATTGCAACAACTAAACCCGCAATTTAAAATCACGCTTGATAGTTCTTAATAATTTGGTTTTATCGTTATTGTCAATCTTATGACGCATTCTTGATATTACAAAAACTTCGAGAGGAGTGTAGTTGATGTCCCTCCAATTGTAATCGCAATGTAATTACAAAAGTTTTCAAACACTTCTGTTATTATGGTTGCAAAACTATAATTTCTAAAATTGTATGGAAGAAATCGAATGACAGACTGAAATTAGTCTTTTGTTTTGCTCGTTATAACATTTAGCGACAAAATTAGAGATATATATTATAATGAAATCATAAAGACTTAGTGGTTCTATAACACTGAAAACTAACAAATTTTGCATCAATTAACAGTTGGGTGGTCACAAATATTGGTACCAAGTGTTACTAGGAAGAAGAGATTCAACATTTGCAAGCAGAGATGCAGCAAATATAAATCTTCCACCAGCATTTTTTAACTTCTCACAACTCATCACAAATTTTCAGTCCCAAGGACTAAACCTTAAAGACTTAGTTGTTCTATCAGGTGGTCACACAATTGGATTTTCGAGATGCACTAAGTTTAGAGACAGGATATTCAATGACACCAGCATAGACACCAATTATGCAGCCCATTTGCAAAAGGCATGCCCTCGAATTGGCGGCGATGACAATTTAGCACCATTTGATTCTACTCCTTCAAGAGTTGACACAAAATACTATAAGGCTTTGTTGCATAAAAAGGGTCTCCTTCATTCTGATCAAGAGCTTTTCAAAGGTGATGGTTCTCAAAGTGATAGATTGGTGCAATTATATAGTAAACATTCTCATGCTTTTGCTTATGATTTTGGAGTTTCTATGATTAAGATGGGTAACATAAAGCCACTTACTGGGAAAAATGGTGAGATCAGGTGCAATTGCAGGAAAGTTAACCAAATATGA
Protein sequence

>MS.gene91228.t1

MDSRIQYYLVIFMVTFATILSPTVANLTPNYYDKICPKALPIIKSVVKQAIIREPRMGASLLRLHFHDCFVNGCDGSVLLDDTPTFIGEKTAIPNINSLRGFEVVDQIKAAVDKACKRPIISCADILAIAARDSVAILGGHKYWYQVLLGRRDSTFASRDAANINLPPAFFNFSQLITNFQSQGLNLKDLVVLSGGHTIGFSRCTKFRDRIFNDTSIDTNYAAHLQKACPRIGGDDNLAPFDSTPSRVDTKYYKALLHKKGLLHSDQELFKGDGSQSDRLVQLYSKHSHAFAYDFGVSMIKMGNIKPLTGKNGEIRCNCRKVNQI