Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054421.t1 | RHN49201.1 | 96.7 | 215 | 7 | 0 | 1 | 215 | 1 | 215 | 1.40E-120 | 442.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054421.t1 | Q9LZM4 | 38.4 | 190 | 108 | 5 | 32 | 214 | 43 | 230 | 1.6e-32 | 141.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054421.t1 | A0A396H9I2 | 96.7 | 215 | 7 | 0 | 1 | 215 | 1 | 215 | 1.0e-120 | 442.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene054421 | 0.81582 | 7.60E-52 | -1.69E-46 |
| MS.gene050163 | MS.gene054421 | -0.803073 | 4.15E-49 | -1.69E-46 |
| MS.gene050938 | MS.gene054421 | 0.830546 | 2.76E-55 | -1.69E-46 |
| MS.gene052211 | MS.gene054421 | 0.804971 | 1.67E-49 | -1.69E-46 |
| MS.gene05240 | MS.gene054421 | 0.805809 | 1.12E-49 | -1.69E-46 |
| MS.gene05244 | MS.gene054421 | 0.818721 | 1.69E-52 | -1.69E-46 |
| MS.gene053406 | MS.gene054421 | 0.801367 | 9.31E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene054742 | 0.825377 | 4.85E-54 | -1.69E-46 |
| MS.gene054421 | MS.gene056748 | 0.800325 | 1.52E-48 | -1.69E-46 |
| MS.gene054421 | MS.gene056920 | 0.806898 | 6.58E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene059953 | 0.800233 | 1.59E-48 | -1.69E-46 |
| MS.gene054421 | MS.gene059955 | 0.830119 | 3.51E-55 | -1.69E-46 |
| MS.gene054421 | MS.gene061150 | -0.805471 | 1.31E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene062180 | 0.850021 | 2.22E-60 | -1.69E-46 |
| MS.gene054421 | MS.gene063988 | 0.822091 | 2.85E-53 | -1.69E-46 |
| MS.gene054421 | MS.gene064306 | 0.808677 | 2.75E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene064493 | 0.839116 | 1.92E-57 | -1.69E-46 |
| MS.gene054421 | MS.gene065724 | 0.804499 | 2.10E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene066500 | 0.812933 | 3.30E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene066584 | 0.808002 | 3.84E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene066602 | 0.845971 | 2.91E-59 | -1.69E-46 |
| MS.gene054421 | MS.gene066937 | 0.809225 | 2.10E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene069480 | 0.807456 | 5.01E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene069482 | 0.811979 | 5.34E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene071220 | 0.802305 | 5.98E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene073526 | 0.834354 | 3.15E-56 | -1.69E-46 |
| MS.gene054421 | MS.gene07488 | 0.829637 | 4.61E-55 | -1.69E-46 |
| MS.gene054421 | MS.gene08733 | 0.811293 | 7.53E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene08901 | 0.812979 | 3.23E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene08902 | 0.807349 | 5.28E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene09661 | -0.801689 | 8.00E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene09722 | -0.80266 | 5.05E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene20952 | -0.804342 | 2.26E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene21380 | 0.834531 | 2.84E-56 | -1.69E-46 |
| MS.gene054421 | MS.gene21604 | 0.821328 | 4.28E-53 | -1.69E-46 |
| MS.gene054421 | MS.gene23507 | 0.804117 | 2.52E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene24862 | 0.80523 | 1.48E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene28427 | 0.830478 | 2.87E-55 | -1.69E-46 |
| MS.gene054421 | MS.gene28810 | -0.804979 | 1.67E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene29827 | 0.8233 | 1.49E-53 | -1.69E-46 |
| MS.gene054421 | MS.gene29995 | 0.824917 | 6.23E-54 | -1.69E-46 |
| MS.gene054421 | MS.gene33911 | -0.800873 | 1.18E-48 | -1.69E-46 |
| MS.gene054421 | MS.gene34373 | 0.816801 | 4.58E-52 | -1.69E-46 |
| MS.gene054421 | MS.gene35459 | 0.825212 | 5.30E-54 | -1.69E-46 |
| MS.gene054421 | MS.gene35460 | 0.834202 | 3.43E-56 | -1.69E-46 |
| MS.gene054421 | MS.gene35597 | 0.809204 | 2.12E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene35598 | 0.831973 | 1.23E-55 | -1.69E-46 |
| MS.gene054421 | MS.gene36317 | -0.802114 | 6.54E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene37747 | 0.804419 | 2.18E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene37753 | 0.811656 | 6.28E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene38435 | 0.82278 | 1.97E-53 | -1.69E-46 |
| MS.gene054421 | MS.gene38815 | 0.813218 | 2.86E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene40846 | 0.804132 | 2.50E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene42080 | 0.810312 | 1.23E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene42096 | 0.807222 | 5.62E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene42678 | -0.802634 | 5.11E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene43874 | 0.818047 | 2.40E-52 | -1.69E-46 |
| MS.gene054421 | MS.gene44712 | 0.819363 | 1.21E-52 | -1.69E-46 |
| MS.gene054421 | MS.gene45893 | 0.800207 | 1.61E-48 | -1.69E-46 |
| MS.gene054421 | MS.gene46275 | 0.837204 | 5.96E-57 | -1.69E-46 |
| MS.gene054421 | MS.gene46300 | -0.805374 | 1.38E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene47811 | -0.800373 | 1.49E-48 | -1.69E-46 |
| MS.gene054421 | MS.gene48805 | 0.810796 | 9.64E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene48806 | 0.80917 | 2.16E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene48807 | 0.801492 | 8.78E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene48885 | 0.808758 | 2.65E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene48989 | 0.80614 | 9.51E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene49021 | 0.806729 | 7.14E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene49765 | -0.802859 | 4.59E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene50270 | 0.802723 | 4.90E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene50279 | 0.822974 | 1.78E-53 | -1.69E-46 |
| MS.gene054421 | MS.gene51523 | 0.819825 | 9.48E-53 | -1.69E-46 |
| MS.gene054421 | MS.gene52368 | 0.847479 | 1.13E-59 | -1.69E-46 |
| MS.gene054421 | MS.gene52369 | 0.841185 | 5.54E-58 | -1.69E-46 |
| MS.gene054421 | MS.gene52370 | 0.838235 | 3.24E-57 | -1.69E-46 |
| MS.gene054421 | MS.gene52371 | 0.842776 | 2.10E-58 | -1.69E-46 |
| MS.gene054421 | MS.gene52373 | 0.842843 | 2.02E-58 | -1.69E-46 |
| MS.gene054421 | MS.gene54029 | 0.811185 | 7.95E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene54347 | 0.803352 | 3.63E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene54574 | 0.801957 | 7.05E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene56509 | 0.813604 | 2.35E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene57805 | 0.810353 | 1.20E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene58107 | 0.821268 | 4.42E-53 | -1.69E-46 |
| MS.gene054421 | MS.gene62222 | 0.827 | 1.99E-54 | -1.69E-46 |
| MS.gene054421 | MS.gene63913 | 0.807924 | 3.98E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene63914 | 0.81235 | 4.43E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene65821 | 0.81504 | 1.13E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene65948 | 0.806032 | 1.00E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene67371 | 0.803061 | 4.17E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene68453 | 0.831747 | 1.40E-55 | -1.69E-46 |
| MS.gene054421 | MS.gene69966 | 0.829998 | 3.76E-55 | -1.69E-46 |
| MS.gene054421 | MS.gene70253 | 0.806387 | 8.43E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene71251 | 0.81554 | 8.77E-52 | -1.69E-46 |
| MS.gene054421 | MS.gene72992 | 0.800437 | 1.44E-48 | -1.69E-46 |
| MS.gene054421 | MS.gene76500 | -0.801008 | 1.10E-48 | -1.69E-46 |
| MS.gene054421 | MS.gene76737 | 0.80763 | 4.60E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene76738 | 0.825185 | 5.38E-54 | -1.69E-46 |
| MS.gene054421 | MS.gene77032 | 0.819863 | 9.29E-53 | -1.69E-46 |
| MS.gene054421 | MS.gene77033 | 0.811601 | 6.45E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene77325 | 0.809357 | 1.97E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene79220 | 0.825503 | 4.53E-54 | -1.69E-46 |
| MS.gene054421 | MS.gene79222 | 0.8277 | 1.35E-54 | -1.69E-46 |
| MS.gene054421 | MS.gene80293 | 0.812253 | 4.65E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene80744 | 0.832884 | 7.33E-56 | -1.69E-46 |
| MS.gene054421 | MS.gene81349 | 0.80386 | 2.85E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene81350 | 0.819814 | 9.53E-53 | -1.69E-46 |
| MS.gene054421 | MS.gene82244 | 0.817617 | 3.01E-52 | -1.69E-46 |
| MS.gene054421 | MS.gene82245 | 0.808672 | 2.76E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene82858 | 0.808513 | 2.99E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene85117 | -0.800333 | 1.51E-48 | -1.69E-46 |
| MS.gene054421 | MS.gene85750 | 0.80092 | 1.15E-48 | -1.69E-46 |
| MS.gene054421 | MS.gene86563 | 0.813854 | 2.07E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene87043 | 0.807957 | 3.92E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene87056 | 0.81977 | 9.75E-53 | -1.69E-46 |
| MS.gene054421 | MS.gene87450 | 0.803815 | 2.91E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene87750 | 0.824821 | 6.56E-54 | -1.69E-46 |
| MS.gene054421 | MS.gene88851 | -0.803814 | 2.91E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene89774 | 0.818271 | 2.14E-52 | -1.69E-46 |
| MS.gene054421 | MS.gene91228 | 0.822534 | 2.25E-53 | -1.69E-46 |
| MS.gene054421 | MS.gene91534 | 0.800613 | 1.33E-48 | -1.69E-46 |
| MS.gene054421 | MS.gene92366 | -0.80014 | 1.66E-48 | -1.69E-46 |
| MS.gene054421 | MS.gene95804 | 0.801063 | 1.07E-48 | -1.69E-46 |
| MS.gene054421 | MS.gene97024 | 0.80899 | 2.36E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene97182 | 0.800349 | 1.50E-48 | -1.69E-46 |
| MS.gene054421 | MS.gene98322 | 0.837433 | 5.21E-57 | -1.69E-46 |
| MS.gene054421 | MS.gene99062 | 0.813332 | 2.70E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054421.t1 | MTR_7g112440 | 97.561 | 205 | 5 | 0 | 11 | 215 | 1 | 205 | 3.62e-147 | 408 |
| MS.gene054421.t1 | MTR_3g069050 | 37.173 | 191 | 116 | 3 | 26 | 214 | 22 | 210 | 1.44e-38 | 140 |
| MS.gene054421.t1 | MTR_7g103180 | 37.824 | 193 | 110 | 5 | 32 | 214 | 33 | 225 | 6.27e-38 | 139 |
| MS.gene054421.t1 | MTR_5g037310 | 27.193 | 228 | 131 | 10 | 8 | 212 | 7 | 222 | 5.59e-12 | 63.9 |
| MS.gene054421.t1 | MTR_5g037310 | 27.111 | 225 | 135 | 10 | 8 | 212 | 7 | 222 | 6.27e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054421.t1 | AT5G02070 | 37.563 | 197 | 114 | 5 | 25 | 214 | 36 | 230 | 1.46e-36 | 135 |
| MS.gene054421.t1 | AT3G53840 | 36.486 | 222 | 128 | 7 | 3 | 215 | 4 | 221 | 5.62e-34 | 128 |
Find 44 sgRNAs with CRISPR-Local
Find 52 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGTGTGTTTAAGTATAT+TGG | 0.180053 | 7.4:-4245247 | None:intergenic |
| CAACCCTAAGTCTGATCTTA+TGG | 0.212153 | 7.4:-4245500 | None:intergenic |
| TGCATGCAATTTAGTTAATT+AGG | 0.264632 | 7.4:-4245615 | None:intergenic |
| TTAGAGTTCTTGTCAGCAAC+AGG | 0.338196 | 7.4:+4245165 | MS.gene054421:CDS |
| TGTTATTCTTCTGATCTCAT+TGG | 0.347587 | 7.4:+4245267 | MS.gene054421:CDS |
| CAAGTGTGTTTAAGTATATT+GGG | 0.351271 | 7.4:-4245246 | None:intergenic |
| CTGTTTGAAGAACAGTTTAG+AGG | 0.353341 | 7.4:-4245384 | None:intergenic |
| CAGCATTTGTAGACAGTTTG+AGG | 0.366269 | 7.4:+4245404 | MS.gene054421:CDS |
| AACCCTAAGTCTGATCTTAT+GGG | 0.401892 | 7.4:-4245499 | None:intergenic |
| TACTGCTTACACTTGTTTGG+TGG | 0.409415 | 7.4:+4245530 | MS.gene054421:CDS |
| TTGTACTGCTTACACTTGTT+TGG | 0.410029 | 7.4:+4245527 | MS.gene054421:CDS |
| AGAAAGATTCCATGTATCCT+TGG | 0.438666 | 7.4:+4244965 | None:intergenic |
| TGATTAGTAGAAAGAGTAGA+AGG | 0.443383 | 7.4:-4245014 | None:intergenic |
| ATTCCATGTATCCTTGGGAT+TGG | 0.449562 | 7.4:+4244971 | None:intergenic |
| TATTCTTCTGATCTCATTGG+TGG | 0.451225 | 7.4:+4245270 | MS.gene054421:CDS |
| TTCCCATAAGATCAGACTTA+GGG | 0.466503 | 7.4:+4245497 | MS.gene054421:CDS |
| GAAAGATTCCATGTATCCTT+GGG | 0.467489 | 7.4:+4244966 | None:intergenic |
| TCTTCTGATCTCATTGGTGG+AGG | 0.471616 | 7.4:+4245273 | MS.gene054421:CDS |
| ATTACAAGCTTGTTAGCACT+TGG | 0.472165 | 7.4:-4245216 | None:intergenic |
| TTTCTACTAATCACTGGTCT+TGG | 0.477113 | 7.4:+4245024 | MS.gene054421:CDS |
| AACAGTTTAGAGGAGATTGA+AGG | 0.483257 | 7.4:-4245374 | None:intergenic |
| CTACTCTTTCTACTAATCAC+TGG | 0.492211 | 7.4:+4245018 | MS.gene054421:CDS |
| ATTCCAATCCCAAGGATACA+TGG | 0.495507 | 7.4:-4244974 | None:intergenic |
| GTTGAGTGCAGAAATATTGA+AGG | 0.498744 | 7.4:-4245319 | None:intergenic |
| GGATTGGAATAGTTTAAAGA+TGG | 0.503276 | 7.4:+4244987 | MS.gene054421:CDS |
| ATAAGATCAGACTTAGGGTT+GGG | 0.510350 | 7.4:+4245502 | MS.gene054421:CDS |
| ATTCCCATAAGATCAGACTT+AGG | 0.515395 | 7.4:+4245496 | MS.gene054421:CDS |
| ATGATGATTGTGGTGACAAA+AGG | 0.535496 | 7.4:+4245115 | MS.gene054421:CDS |
| CAATCATCATTAGTGCTAAG+TGG | 0.546790 | 7.4:-4245102 | None:intergenic |
| TCATTAGTGCTAAGTGGGTG+AGG | 0.560513 | 7.4:-4245096 | None:intergenic |
| ATGCAATTTAGTTAATTAGG+AGG | 0.566067 | 7.4:-4245612 | None:intergenic |
| TTTAAACTATTCCAATCCCA+AGG | 0.579737 | 7.4:-4244982 | None:intergenic |
| CATAAGATCAGACTTAGGGT+TGG | 0.583330 | 7.4:+4245501 | MS.gene054421:CDS |
| AATCATCATTAGTGCTAAGT+GGG | 0.586032 | 7.4:-4245101 | None:intergenic |
| CAAGGAGATGCATTGATCAC+GGG | 0.586885 | 7.4:-4245048 | None:intergenic |
| TTACAAGCTTGTTAGCACTT+GGG | 0.592605 | 7.4:-4245215 | None:intergenic |
| GCATCTCCTTGTTCAAATTG+TGG | 0.598062 | 7.4:+4245060 | MS.gene054421:CDS |
| ACAAGGAGATGCATTGATCA+CGG | 0.611816 | 7.4:-4245049 | None:intergenic |
| ACTATGGGATTGAGTTGCAA+TGG | 0.615433 | 7.4:+4245586 | MS.gene054421:CDS |
| TTGAGTGCAGAAATATTGAA+GGG | 0.632612 | 7.4:-4245318 | None:intergenic |
| AAGTCACCACAATTTGAACA+AGG | 0.634351 | 7.4:-4245066 | None:intergenic |
| TAGAGTTCTTGTCAGCAACA+GGG | 0.637502 | 7.4:+4245166 | MS.gene054421:CDS |
| GTGTGTTTAAGTATATTGGG+TGG | 0.649267 | 7.4:-4245243 | None:intergenic |
| CTTAGCACTAATGATGATTG+TGG | 0.667956 | 7.4:+4245105 | MS.gene054421:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTAAAAAATGGAACTAT+GGG | + | chr7.4:4245571-4245590 | MS.gene054421:CDS | 20.0% |
| !!! | TTTTAAGTAATGACAACAAA+GGG | - | chr7.4:4245463-4245482 | None:intergenic | 20.0% |
| ! | ACAAGTGTGTTTAAGTATAT+TGG | - | chr7.4:4245250-4245269 | None:intergenic | 25.0% |
| ! | CAAGTGTGTTTAAGTATATT+GGG | - | chr7.4:4245249-4245268 | None:intergenic | 25.0% |
| !!! | CATTTTTTAAAAGGTTCATC+AGG | - | chr7.4:4245564-4245583 | None:intergenic | 25.0% |
| !!! | CCATAGTTCCATTTTTTAAA+AGG | - | chr7.4:4245573-4245592 | None:intergenic | 25.0% |
| !!! | CCTTTTAAAAAATGGAACTA+TGG | + | chr7.4:4245570-4245589 | MS.gene054421:CDS | 25.0% |
| !!! | CTGATGAACCTTTTAAAAAA+TGG | + | chr7.4:4245562-4245581 | MS.gene054421:CDS | 25.0% |
| !!! | CTTTTAAGTAATGACAACAA+AGG | - | chr7.4:4245464-4245483 | None:intergenic | 25.0% |
| AATCATCATTAGTGCTAAGT+GGG | - | chr7.4:4245104-4245123 | None:intergenic | 30.0% | |
| GGATTGGAATAGTTTAAAGA+TGG | + | chr7.4:4244987-4245006 | MS.gene054421:CDS | 30.0% | |
| TGATTAGTAGAAAGAGTAGA+AGG | - | chr7.4:4245017-4245036 | None:intergenic | 30.0% | |
| TGTTATTCTTCTGATCTCAT+TGG | + | chr7.4:4245267-4245286 | MS.gene054421:CDS | 30.0% | |
| TTGAGTGCAGAAATATTGAA+GGG | - | chr7.4:4245321-4245340 | None:intergenic | 30.0% | |
| TTTAAACTATTCCAATCCCA+AGG | - | chr7.4:4244985-4245004 | None:intergenic | 30.0% | |
| AACAGTTTAGAGGAGATTGA+AGG | - | chr7.4:4245377-4245396 | None:intergenic | 35.0% | |
| AACCCTAAGTCTGATCTTAT+GGG | - | chr7.4:4245502-4245521 | None:intergenic | 35.0% | |
| AAGTCACCACAATTTGAACA+AGG | - | chr7.4:4245069-4245088 | None:intergenic | 35.0% | |
| ATAAGATCAGACTTAGGGTT+GGG | + | chr7.4:4245502-4245521 | MS.gene054421:CDS | 35.0% | |
| ATGATGATTGTGGTGACAAA+AGG | + | chr7.4:4245115-4245134 | MS.gene054421:CDS | 35.0% | |
| ATTCCCATAAGATCAGACTT+AGG | + | chr7.4:4245496-4245515 | MS.gene054421:CDS | 35.0% | |
| CAATCATCATTAGTGCTAAG+TGG | - | chr7.4:4245105-4245124 | None:intergenic | 35.0% | |
| CTACTCTTTCTACTAATCAC+TGG | + | chr7.4:4245018-4245037 | MS.gene054421:CDS | 35.0% | |
| CTGTTTGAAGAACAGTTTAG+AGG | - | chr7.4:4245387-4245406 | None:intergenic | 35.0% | |
| CTTAGCACTAATGATGATTG+TGG | + | chr7.4:4245105-4245124 | MS.gene054421:CDS | 35.0% | |
| GTGTGTTTAAGTATATTGGG+TGG | - | chr7.4:4245246-4245265 | None:intergenic | 35.0% | |
| GTTGAGTGCAGAAATATTGA+AGG | - | chr7.4:4245322-4245341 | None:intergenic | 35.0% | |
| TAGACAGTTTGAGGAAAAAG+TGG | + | chr7.4:4245413-4245432 | MS.gene054421:CDS | 35.0% | |
| TATTCTTCTGATCTCATTGG+TGG | + | chr7.4:4245270-4245289 | MS.gene054421:CDS | 35.0% | |
| TTCCCATAAGATCAGACTTA+GGG | + | chr7.4:4245497-4245516 | MS.gene054421:CDS | 35.0% | |
| TTGTACTGCTTACACTTGTT+TGG | + | chr7.4:4245527-4245546 | MS.gene054421:CDS | 35.0% | |
| ! | TAGCACTTGGGTCAATTTTA+AGG | - | chr7.4:4245206-4245225 | None:intergenic | 35.0% |
| ! | TTTCTACTAATCACTGGTCT+TGG | + | chr7.4:4245024-4245043 | MS.gene054421:CDS | 35.0% |
| !! | ATTACAAGCTTGTTAGCACT+TGG | - | chr7.4:4245219-4245238 | None:intergenic | 35.0% |
| !! | TTACAAGCTTGTTAGCACTT+GGG | - | chr7.4:4245218-4245237 | None:intergenic | 35.0% |
| AAAAAGTGGAGGAGGGAAAT+GGG | + | chr7.4:4245427-4245446 | MS.gene054421:CDS | 40.0% | |
| ACAGTTTGAGGAAAAAGTGG+AGG | + | chr7.4:4245416-4245435 | MS.gene054421:CDS | 40.0% | |
| CAACCCTAAGTCTGATCTTA+TGG | - | chr7.4:4245503-4245522 | None:intergenic | 40.0% | |
| CAGCATTTGTAGACAGTTTG+AGG | + | chr7.4:4245404-4245423 | MS.gene054421:CDS | 40.0% | |
| CATAAGATCAGACTTAGGGT+TGG | + | chr7.4:4245501-4245520 | MS.gene054421:CDS | 40.0% | |
| GCATCTCCTTGTTCAAATTG+TGG | + | chr7.4:4245060-4245079 | MS.gene054421:CDS | 40.0% | |
| TACTGCTTACACTTGTTTGG+TGG | + | chr7.4:4245530-4245549 | MS.gene054421:CDS | 40.0% | |
| TAGAGTTCTTGTCAGCAACA+GGG | + | chr7.4:4245166-4245185 | MS.gene054421:CDS | 40.0% | |
| TTAGAGTTCTTGTCAGCAAC+AGG | + | chr7.4:4245165-4245184 | MS.gene054421:CDS | 40.0% | |
| TTTGAGGAAAAAGTGGAGGA+GGG | + | chr7.4:4245420-4245439 | MS.gene054421:CDS | 40.0% | |
| ! | ACAAGGAGATGCATTGATCA+CGG | - | chr7.4:4245052-4245071 | None:intergenic | 40.0% |
| ! | ACTATGGGATTGAGTTGCAA+TGG | + | chr7.4:4245586-4245605 | MS.gene054421:CDS | 40.0% |
| GAAAAAGTGGAGGAGGGAAA+TGG | + | chr7.4:4245426-4245445 | MS.gene054421:CDS | 45.0% | |
| GTTTGAGGAAAAAGTGGAGG+AGG | + | chr7.4:4245419-4245438 | MS.gene054421:CDS | 45.0% | |
| TCATTAGTGCTAAGTGGGTG+AGG | - | chr7.4:4245099-4245118 | None:intergenic | 45.0% | |
| TCTTCTGATCTCATTGGTGG+AGG | + | chr7.4:4245273-4245292 | MS.gene054421:CDS | 45.0% | |
| ! | CAAGGAGATGCATTGATCAC+GGG | - | chr7.4:4245051-4245070 | None:intergenic | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 4244976 | 4245623 | 4244976 | ID=MS.gene054421 |
| chr7.4 | mRNA | 4244976 | 4245623 | 4244976 | ID=MS.gene054421.t1;Parent=MS.gene054421 |
| chr7.4 | exon | 4244976 | 4245623 | 4244976 | ID=MS.gene054421.t1.exon1;Parent=MS.gene054421.t1 |
| chr7.4 | CDS | 4244976 | 4245623 | 4244976 | ID=cds.MS.gene054421.t1;Parent=MS.gene054421.t1 |
| Gene Sequence |
| Protein sequence |
