AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91521

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91521.t1 MTR_7g010300 95.107 327 10 3 17 342 20 341 0.0 518
MS.gene91521.t1 MTR_6g012280 62.977 262 80 7 35 288 36 288 1.25e-76 239
MS.gene91521.t1 MTR_1g077020 44.828 203 86 6 86 284 6 186 2.07e-52 172
MS.gene91521.t1 MTR_3g100650 43.541 209 96 5 86 284 77 273 1.14e-48 165
MS.gene91521.t1 MTR_5g020510 43.062 209 100 7 87 285 97 296 4.82e-48 164
MS.gene91521.t1 MTR_5g032600 44.811 212 83 7 89 284 78 271 1.82e-46 159
MS.gene91521.t1 MTR_4g134580 40.928 237 98 9 89 285 113 347 7.21e-45 157
MS.gene91521.t1 MTR_5g065440 39.738 229 102 6 81 284 50 267 3.92e-44 153
MS.gene91521.t1 MTR_2g076780 38.785 214 99 6 89 284 37 236 5.10e-40 141
MS.gene91521.t1 MTR_6g073013 38.860 193 66 5 89 280 19 160 2.43e-37 132
MS.gene91521.t1 MTR_8g069080 36.792 212 97 6 89 280 69 263 6.78e-36 131
MS.gene91521.t1 MTR_8g467340 75.410 61 15 0 86 146 61 121 1.11e-26 109
MS.gene91521.t1 MTR_8g069380 55.224 67 30 0 218 284 48 114 6.65e-20 84.3
MS.gene91521.t1 MTR_8g051480 59.701 67 26 1 218 284 63 128 2.45e-19 83.2
MS.gene91521.t1 MTR_3g039810 51.899 79 30 2 79 157 10 80 8.95e-18 77.4
MS.gene91521.t1 MTR_6g012220 57.895 57 18 1 83 139 15 65 6.41e-17 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91521.t1 AT5G15210 49.817 273 100 9 22 286 3 246 7.29e-72 224
MS.gene91521.t1 AT1G69600 53.659 205 67 5 87 281 29 215 2.58e-65 207
MS.gene91521.t1 AT3G28920 48.693 306 105 10 22 300 1 281 1.16e-62 202
MS.gene91521.t1 AT5G39760 46.520 273 109 8 32 289 17 267 1.52e-55 184
MS.gene91521.t1 AT1G14440 43.363 226 105 5 84 300 85 296 8.82e-53 177
MS.gene91521.t1 AT1G14440 43.363 226 105 5 84 300 85 296 8.82e-53 177
MS.gene91521.t1 AT2G02540 42.152 223 108 6 86 296 84 297 6.29e-51 172
MS.gene91521.t1 AT2G02540 42.152 223 108 6 86 296 84 297 6.29e-51 172
MS.gene91521.t1 AT4G24660 45.455 198 83 4 87 284 47 219 4.24e-50 167
MS.gene91521.t1 AT4G24660 45.641 195 81 4 87 281 47 216 2.99e-49 165
MS.gene91521.t1 AT5G60480 43.939 198 78 5 86 278 34 203 1.68e-48 162
MS.gene91521.t1 AT5G65410 43.655 197 94 5 87 283 73 252 1.31e-44 154
MS.gene91521.t1 AT1G75240 38.559 236 104 4 84 283 71 301 1.46e-44 155
MS.gene91521.t1 AT2G18350 39.899 198 100 4 89 285 82 261 3.01e-41 145
MS.gene91521.t1 AT3G50890 39.252 214 99 8 89 295 60 249 1.33e-35 130
MS.gene91521.t1 AT5G42780 35.204 196 103 5 89 281 64 238 2.96e-28 110
MS.gene91521.t1 AT1G14687 28.283 198 106 4 84 279 2 165 4.24e-20 86.7
MS.gene91521.t1 AT1G74660 53.521 71 25 2 87 157 37 99 3.45e-19 82.0
MS.gene91521.t1 AT1G74660 61.111 54 19 1 87 140 37 88 8.09e-19 80.9
MS.gene91521.t1 AT1G18835 54.930 71 21 2 87 157 24 83 1.22e-17 77.4
MS.gene91521.t1 AT3G28917 61.404 57 21 1 86 142 30 85 3.00e-17 76.6

Find 95 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGTGTTGGTGTTGGAGTT+GGG 0.196157 7.1:-85201867 None:intergenic
ACAATTCTAGAAAGCGTTTC+AGG 0.216225 7.1:+85202505 MS.gene91521:CDS
TTGAGAACACCATTTGAAAA+AGG 0.255600 7.1:-85202018 None:intergenic
GGTGGTGTTGGTGTTGGAGT+TGG 0.272963 7.1:-85201868 None:intergenic
AGGGGCGGAGGGGTAGTAAG+AGG 0.274253 7.1:-85202400 None:intergenic
TGCTCTCTCCGCCGCCTTAC+CGG 0.274469 7.1:+85202434 MS.gene91521:CDS
GGTGGTGGTGAGGAGGAATT+TGG 0.278567 7.1:-85202369 None:intergenic
TCAGTTTCATGTTGTTGTTC+TGG 0.293454 7.1:-85201949 None:intergenic
GTGGAAAGTGGTGGTTCTTC+AGG 0.318129 7.1:-85202270 None:intergenic
TAATATTCTCATTGTTGTTA+AGG 0.328995 7.1:-85202707 None:intergenic
TGGTGTTGGAGTTGGGGTTA+AGG 0.330499 7.1:-85201860 None:intergenic
TGTTGTTGAGGTTGTTAATA+TGG 0.330756 7.1:-85201911 None:intergenic
ATCGTAGTGTTCTTAAGGTT+TGG 0.334173 7.1:+85202646 MS.gene91521:CDS
GAGACATTCTTTGTAGGTTA+TGG 0.340619 7.1:-85202106 None:intergenic
GGTTGAAGTGGTGGTGGTGG+TGG 0.346158 7.1:-85202053 None:intergenic
TTCATCAACATGGTTTGGTT+TGG 0.350778 7.1:-85202471 None:intergenic
TGTTGATCGTAGTGTTCTTA+AGG 0.355414 7.1:+85202641 MS.gene91521:CDS
CAGAATGAAGGTGGAGTTGT+TGG 0.373866 7.1:+85202816 MS.gene91521:CDS
TATGGTAGGTTGATGGTTGT+TGG 0.374043 7.1:-85202088 None:intergenic
GGAGTAACTGTTCGTGCTAA+TGG 0.375764 7.1:+85202837 MS.gene91521:CDS
AAGAAGCATGTGAGGGGCGG+AGG 0.375917 7.1:-85202412 None:intergenic
GAGAATTCATCAACATGGTT+TGG 0.380377 7.1:-85202476 None:intergenic
TGTAGGTTATGGTAGGTTGA+TGG 0.383764 7.1:-85202095 None:intergenic
CACAAGAATGTTGAGATTCA+TGG 0.386670 7.1:+85202774 MS.gene91521:CDS
ATTTGGGCTCCGGTGGGAAA+AGG 0.392682 7.1:-85202352 None:intergenic
GTTGGTGGTGGTGTTGGTGT+TGG 0.400036 7.1:-85201874 None:intergenic
TGGTGTTGGTGTTGGAGTTG+GGG 0.405042 7.1:-85201866 None:intergenic
GTTCTTCAGGTTCACGGCGG+TGG 0.414474 7.1:-85202257 None:intergenic
CTGAAATTTGCTGAGAAAGT+TGG 0.415196 7.1:+85202561 MS.gene91521:CDS
TGAATTCACCACAACCATCT+AGG 0.423468 7.1:-85202161 None:intergenic
ATTGATGTTGGTGGTGGTGT+TGG 0.426088 7.1:-85201880 None:intergenic
CGGTGGGAAAAGGGTGGTGG+TGG 0.426898 7.1:-85202342 None:intergenic
GAAAAGGGTGGTGGTGGAAG+TGG 0.427112 7.1:-85202336 None:intergenic
TTGTTCTGGTGATTTAGTTA+AGG 0.427703 7.1:-85201935 None:intergenic
GATGGTTGTTGGTGGTGTTG+TGG 0.428385 7.1:-85202077 None:intergenic
CTCCGGTGGGAAAAGGGTGG+TGG 0.429757 7.1:-85202345 None:intergenic
GGTGGTTGAAGTGGTGGTGG+TGG 0.435301 7.1:-85202056 None:intergenic
GGAGGAGATCGGTGGTGGTG+AGG 0.437213 7.1:-85202379 None:intergenic
GGGTAGTAAGAGGAGGAGAT+CGG 0.438670 7.1:-85202390 None:intergenic
GTTGAGGTTGTTAATATGGT+TGG 0.439657 7.1:-85201907 None:intergenic
GGCGGAGGGGTAGTAAGAGG+AGG 0.440166 7.1:-85202397 None:intergenic
GTGGTGGTGAGGAGGAATTT+GGG 0.444504 7.1:-85202368 None:intergenic
CTAGGTGGTCATGCCCTAGA+TGG 0.446320 7.1:+85202147 MS.gene91521:CDS
GGGCTCCGGTGGGAAAAGGG+TGG 0.457386 7.1:-85202348 None:intergenic
GTTCACGGCGGTGGAAGTTA+CGG 0.458240 7.1:-85202248 None:intergenic
TTTAAGGATGTTGGGTCGGT+TGG 0.464594 7.1:-85202204 None:intergenic
TGAAATTTGCTGAGAAAGTT+GGG 0.467964 7.1:+85202562 MS.gene91521:CDS
TGTGGTGGTTGAAGTGGTGG+TGG 0.482629 7.1:-85202059 None:intergenic
TGGTGTTGTGGTGGTTGAAG+TGG 0.484034 7.1:-85202065 None:intergenic
ATGGTTGGTGCTATTGATGT+TGG 0.487966 7.1:-85201892 None:intergenic
GGAGATCGGTGGTGGTGAGG+AGG 0.490231 7.1:-85202376 None:intergenic
CACAATCATTATCAGAATGA+AGG 0.494541 7.1:+85202804 MS.gene91521:CDS
TGTTGTGGTGGTTGAAGTGG+TGG 0.495077 7.1:-85202062 None:intergenic
AGAAGCATGTGAGGGGCGGA+GGG 0.495592 7.1:-85202411 None:intergenic
GGGTCGGTTGGTGTTGCTGT+GGG 0.497066 7.1:-85202192 None:intergenic
GTGGTGGTTCTTCAGGTTCA+CGG 0.497308 7.1:-85202263 None:intergenic
TAAGAGGAGGAGATCGGTGG+TGG 0.498462 7.1:-85202384 None:intergenic
TGGGGTTAAGGTTATGTCCA+TGG 0.499789 7.1:-85201848 None:intergenic
GTGAGGAGGAATTTGGGCTC+CGG 0.500275 7.1:-85202362 None:intergenic
GTGGTGGAAGTGGTTGATGA+CGG 0.500583 7.1:-85202326 None:intergenic
TTTAGTTAAGGTTGTTGTTG+AGG 0.502769 7.1:-85201923 None:intergenic
AGGAGGAATTTGGGCTCCGG+TGG 0.505710 7.1:-85202359 None:intergenic
TTTGGGCTCCGGTGGGAAAA+GGG 0.507171 7.1:-85202351 None:intergenic
GGTAGGTTGATGGTTGTTGG+TGG 0.516018 7.1:-85202085 None:intergenic
CATTCTTTGTAGGTTATGGT+AGG 0.517382 7.1:-85202102 None:intergenic
GGTGCTATTGATGTTGGTGG+TGG 0.518237 7.1:-85201886 None:intergenic
GTTGGTGCTATTGATGTTGG+TGG 0.524202 7.1:-85201889 None:intergenic
AACAATGAGAATATTAATGA+TGG 0.527160 7.1:+85202714 MS.gene91521:CDS
GACCACCTAGGTTTGCTGCA+TGG 0.528612 7.1:-85202134 None:intergenic
GGTTGTTGGTGGTGTTGTGG+TGG 0.530020 7.1:-85202074 None:intergenic
GAATTCACCACAACCATCTA+GGG 0.539304 7.1:-85202160 None:intergenic
ACATGAGTTGTGGTGGAAAG+TGG 0.548946 7.1:-85202282 None:intergenic
GAGAGAGCAAGAAGCATGTG+AGG 0.550052 7.1:-85202420 None:intergenic
GAAGCATGTGAGGGGCGGAG+GGG 0.553313 7.1:-85202410 None:intergenic
TGGGTCGGTTGGTGTTGCTG+TGG 0.568822 7.1:-85202193 None:intergenic
TCCTTAAAATGTGCTGCTTG+TGG 0.574232 7.1:+85202219 MS.gene91521:CDS
GGTCATGCCCTAGATGGTTG+TGG 0.575703 7.1:+85202153 MS.gene91521:CDS
TAGTAAGAGGAGGAGATCGG+TGG 0.577001 7.1:-85202387 None:intergenic
TTGTGTTCTTCATCTTCAAG+AGG 0.585430 7.1:-85202756 None:intergenic
TTCAATGACATGAGTTGTGG+TGG 0.585624 7.1:-85202289 None:intergenic
AGCAAGAAGCATGTGAGGGG+CGG 0.594492 7.1:-85202415 None:intergenic
AGAGAGCAAGAAGCATGTGA+GGG 0.597359 7.1:-85202419 None:intergenic
AATCATTATCAGAATGAAGG+TGG 0.598316 7.1:+85202807 MS.gene91521:CDS
GTGGAAGTGGTTGATGACGG+TGG 0.599219 7.1:-85202323 None:intergenic
GAGAGCAAGAAGCATGTGAG+GGG 0.602424 7.1:-85202418 None:intergenic
ATATTCAATGACATGAGTTG+TGG 0.623812 7.1:-85202292 None:intergenic
AGTGGTTGATGACGGTGGTG+AGG 0.625162 7.1:-85202318 None:intergenic
GGAGGAATTTGGGCTCCGGT+GGG 0.630361 7.1:-85202358 None:intergenic
AGAGTGAGAATTCATCAACA+TGG 0.636406 7.1:-85202481 None:intergenic
CATCTAGGGCATGACCACCT+AGG 0.648371 7.1:-85202146 None:intergenic
TGAGTTGTGGTGGAAAGTGG+TGG 0.661282 7.1:-85202279 None:intergenic
CACGGCGGTGGAAGTTACGG+TGG 0.670619 7.1:-85202245 None:intergenic
AACCATGCAGCAAACCTAGG+TGG 0.685477 7.1:+85202132 MS.gene91521:CDS
AATTTGCTGAGAAAGTTGGG+TGG 0.726025 7.1:+85202565 MS.gene91521:CDS
GTGGTTCTTCAGGTTCACGG+CGG 0.747111 7.1:-85202260 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATGAGAATATTAATGA+TGG + chr7.1:85202714-85202733 MS.gene91521:CDS 20.0%
!!! TAATATTCTCATTGTTGTTA+AGG - chr7.1:85202710-85202729 None:intergenic 20.0%
!! TTTGAAAAAGGTGAGATTTT+TGG - chr7.1:85202009-85202028 None:intergenic 25.0%
!!! AAAATCTCACCTTTTTCAAA+TGG + chr7.1:85202009-85202028 MS.gene91521:CDS 25.0%
AATCATTATCAGAATGAAGG+TGG + chr7.1:85202807-85202826 MS.gene91521:CDS 30.0%
ATATTCAATGACATGAGTTG+TGG - chr7.1:85202295-85202314 None:intergenic 30.0%
CACAATCATTATCAGAATGA+AGG + chr7.1:85202804-85202823 MS.gene91521:CDS 30.0%
TGTTGTTGAGGTTGTTAATA+TGG - chr7.1:85201914-85201933 None:intergenic 30.0%
TTGAGAACACCATTTGAAAA+AGG - chr7.1:85202021-85202040 None:intergenic 30.0%
TTGTTCTGGTGATTTAGTTA+AGG - chr7.1:85201938-85201957 None:intergenic 30.0%
! TTTAGTTAAGGTTGTTGTTG+AGG - chr7.1:85201926-85201945 None:intergenic 30.0%
!! CATGAGTTTTGTAATGAGAT+TGG + chr7.1:85202618-85202637 MS.gene91521:CDS 30.0%
!! TGAAATTTGCTGAGAAAGTT+GGG + chr7.1:85202562-85202581 MS.gene91521:CDS 30.0%
!!! GTTTTTGAGACATTCTTTGT+AGG - chr7.1:85202115-85202134 None:intergenic 30.0%
AGAGTGAGAATTCATCAACA+TGG - chr7.1:85202484-85202503 None:intergenic 35.0%
ATCGTAGTGTTCTTAAGGTT+TGG + chr7.1:85202646-85202665 MS.gene91521:CDS 35.0%
CACAAGAATGTTGAGATTCA+TGG + chr7.1:85202774-85202793 MS.gene91521:CDS 35.0%
CATTCTTTGTAGGTTATGGT+AGG - chr7.1:85202105-85202124 None:intergenic 35.0%
GAGAATTCATCAACATGGTT+TGG - chr7.1:85202479-85202498 None:intergenic 35.0%
GAGACATTCTTTGTAGGTTA+TGG - chr7.1:85202109-85202128 None:intergenic 35.0%
GTTGAGGTTGTTAATATGGT+TGG - chr7.1:85201910-85201929 None:intergenic 35.0%
TGTTGATCGTAGTGTTCTTA+AGG + chr7.1:85202641-85202660 MS.gene91521:CDS 35.0%
TTGTGTTCTTCATCTTCAAG+AGG - chr7.1:85202759-85202778 None:intergenic 35.0%
! GTTGTTAAGGTTTTCTCGTT+TGG - chr7.1:85202697-85202716 None:intergenic 35.0%
! TCAGTTTCATGTTGTTGTTC+TGG - chr7.1:85201952-85201971 None:intergenic 35.0%
!! ACAATTCTAGAAAGCGTTTC+AGG + chr7.1:85202505-85202524 MS.gene91521:CDS 35.0%
!! ACATTTTAAGGATGTTGGGT+CGG - chr7.1:85202211-85202230 None:intergenic 35.0%
!! CAGCACATTTTAAGGATGTT+GGG - chr7.1:85202215-85202234 None:intergenic 35.0%
!! CTGAAATTTGCTGAGAAAGT+TGG + chr7.1:85202561-85202580 MS.gene91521:CDS 35.0%
!! TTCATCAACATGGTTTGGTT+TGG - chr7.1:85202474-85202493 None:intergenic 35.0%
!!! ATTTTTGGTGTTGTTGAGGT+TGG - chr7.1:85201994-85202013 None:intergenic 35.0%
!!! TGAGATTTTTGGTGTTGTTG+AGG - chr7.1:85201998-85202017 None:intergenic 35.0%
!!! TTTTTGGTGTTGTTGAGGTT+GGG - chr7.1:85201993-85202012 None:intergenic 35.0%
AAAAACCATGCAGCAAACCT+AGG + chr7.1:85202129-85202148 MS.gene91521:CDS 40.0%
GAATTCACCACAACCATCTA+GGG - chr7.1:85202163-85202182 None:intergenic 40.0%
TGAATTCACCACAACCATCT+AGG - chr7.1:85202164-85202183 None:intergenic 40.0%
TTCAATGACATGAGTTGTGG+TGG - chr7.1:85202292-85202311 None:intergenic 40.0%
! TGAGGTTGGGAATTTTGTTG+TGG - chr7.1:85201980-85201999 None:intergenic 40.0%
! TGTAGGTTATGGTAGGTTGA+TGG - chr7.1:85202098-85202117 None:intergenic 40.0%
!! AATTTGCTGAGAAAGTTGGG+TGG + chr7.1:85202565-85202584 MS.gene91521:CDS 40.0%
!! ATGGTTGGTGCTATTGATGT+TGG - chr7.1:85201895-85201914 None:intergenic 40.0%
!! GAGGTTGGGAATTTTGTTGT+GGG - chr7.1:85201979-85201998 None:intergenic 40.0%
!! GCAGCACATTTTAAGGATGT+TGG - chr7.1:85202216-85202235 None:intergenic 40.0%
!! TATGGTAGGTTGATGGTTGT+TGG - chr7.1:85202091-85202110 None:intergenic 40.0%
!! TCCTTAAAATGTGCTGCTTG+TGG + chr7.1:85202219-85202238 MS.gene91521:CDS 40.0%
CAGAATGAAGGTGGAGTTGT+TGG + chr7.1:85202816-85202835 MS.gene91521:CDS 45.0%
GGAGTAACTGTTCGTGCTAA+TGG + chr7.1:85202837-85202856 MS.gene91521:CDS 45.0%
TTTAAGGATGTTGGGTCGGT+TGG - chr7.1:85202207-85202226 None:intergenic 45.0%
! ACATGAGTTGTGGTGGAAAG+TGG - chr7.1:85202285-85202304 None:intergenic 45.0%
! AGAGAGCAAGAAGCATGTGA+GGG - chr7.1:85202422-85202441 None:intergenic 45.0%
! GCCACAAGCAGCACATTTTA+AGG - chr7.1:85202223-85202242 None:intergenic 45.0%
!! ATTGATGTTGGTGGTGGTGT+TGG - chr7.1:85201883-85201902 None:intergenic 45.0%
!! GTTGGTGCTATTGATGTTGG+TGG - chr7.1:85201892-85201911 None:intergenic 45.0%
!! TTTGGAGCTGCAACGTTTTC+CGG - chr7.1:85202456-85202475 None:intergenic 45.0%
AACCATGCAGCAAACCTAGG+TGG + chr7.1:85202132-85202151 MS.gene91521:CDS 50.0%
GGGTAGTAAGAGGAGGAGAT+CGG - chr7.1:85202393-85202412 None:intergenic 50.0%
GTGGAAAGTGGTGGTTCTTC+AGG - chr7.1:85202273-85202292 None:intergenic 50.0%
TAGTAAGAGGAGGAGATCGG+TGG - chr7.1:85202390-85202409 None:intergenic 50.0%
TGTTGTGGTGGTTGAAGTGG+TGG - chr7.1:85202065-85202084 None:intergenic 50.0%
! AGCTGCAACGTTTTCCGGTA+AGG - chr7.1:85202451-85202470 None:intergenic 50.0%
! GAGAGAGCAAGAAGCATGTG+AGG - chr7.1:85202423-85202442 None:intergenic 50.0%
! GAGAGCAAGAAGCATGTGAG+GGG - chr7.1:85202421-85202440 None:intergenic 50.0%
! GTGGTGGTGAGGAGGAATTT+GGG - chr7.1:85202371-85202390 None:intergenic 50.0%
! GTGGTGGTTCTTCAGGTTCA+CGG - chr7.1:85202266-85202285 None:intergenic 50.0%
! TGAGTTGTGGTGGAAAGTGG+TGG - chr7.1:85202282-85202301 None:intergenic 50.0%
! TGCAACGTTTTCCGGTAAGG+CGG - chr7.1:85202448-85202467 None:intergenic 50.0%
! TGGTGTTGGAGTTGGGGTTA+AGG - chr7.1:85201863-85201882 None:intergenic 50.0%
!! GATGGTTGTTGGTGGTGTTG+TGG - chr7.1:85202080-85202099 None:intergenic 50.0%
!! GGTAGGTTGATGGTTGTTGG+TGG - chr7.1:85202088-85202107 None:intergenic 50.0%
!! GGTGCTATTGATGTTGGTGG+TGG - chr7.1:85201889-85201908 None:intergenic 50.0%
!! GTGGTGGAAGTGGTTGATGA+CGG - chr7.1:85202329-85202348 None:intergenic 50.0%
!! GTGGTGTTGGTGTTGGAGTT+GGG - chr7.1:85201870-85201889 None:intergenic 50.0%
!! TGGTGTTGGTGTTGGAGTTG+GGG - chr7.1:85201869-85201888 None:intergenic 50.0%
!! TGGTGTTGTGGTGGTTGAAG+TGG - chr7.1:85202068-85202087 None:intergenic 50.0%
ATTTGGGCTCCGGTGGGAAA+AGG - chr7.1:85202355-85202374 None:intergenic 55.0%
CTAGGTGGTCATGCCCTAGA+TGG + chr7.1:85202147-85202166 MS.gene91521:CDS 55.0%
GGTCATGCCCTAGATGGTTG+TGG + chr7.1:85202153-85202172 MS.gene91521:CDS 55.0%
GTGAGGAGGAATTTGGGCTC+CGG - chr7.1:85202365-85202384 None:intergenic 55.0%
GTTCACGGCGGTGGAAGTTA+CGG - chr7.1:85202251-85202270 None:intergenic 55.0%
TAAGAGGAGGAGATCGGTGG+TGG - chr7.1:85202387-85202406 None:intergenic 55.0%
TGTGGTGGTTGAAGTGGTGG+TGG - chr7.1:85202062-85202081 None:intergenic 55.0%
TTTGGGCTCCGGTGGGAAAA+GGG - chr7.1:85202354-85202373 None:intergenic 55.0%
! AACGTTTTCCGGTAAGGCGG+CGG - chr7.1:85202445-85202464 None:intergenic 55.0%
! AGCAAGAAGCATGTGAGGGG+CGG - chr7.1:85202418-85202437 None:intergenic 55.0%
! CATCTAGGGCATGACCACCT+AGG - chr7.1:85202149-85202168 None:intergenic 55.0%
! GGTGGTGGTGAGGAGGAATT+TGG - chr7.1:85202372-85202391 None:intergenic 55.0%
! GTGGTTCTTCAGGTTCACGG+CGG - chr7.1:85202263-85202282 None:intergenic 55.0%
!! AGTGGTTGATGACGGTGGTG+AGG - chr7.1:85202321-85202340 None:intergenic 55.0%
!! GAAAAGGGTGGTGGTGGAAG+TGG - chr7.1:85202339-85202358 None:intergenic 55.0%
!! GACCACCTAGGTTTGCTGCA+TGG - chr7.1:85202137-85202156 None:intergenic 55.0%
!! GGTGGTGTTGGTGTTGGAGT+TGG - chr7.1:85201871-85201890 None:intergenic 55.0%
!! GGTTGTTGGTGGTGTTGTGG+TGG - chr7.1:85202077-85202096 None:intergenic 55.0%
!! GTGGAAGTGGTTGATGACGG+TGG - chr7.1:85202326-85202345 None:intergenic 55.0%
!! GTTGGTGGTGGTGTTGGTGT+TGG - chr7.1:85201877-85201896 None:intergenic 55.0%
AGGAGGAATTTGGGCTCCGG+TGG - chr7.1:85202362-85202381 None:intergenic 60.0%
GGAGGAATTTGGGCTCCGGT+GGG - chr7.1:85202361-85202380 None:intergenic 60.0%
! AAGAAGCATGTGAGGGGCGG+AGG - chr7.1:85202415-85202434 None:intergenic 60.0%
! AGAAGCATGTGAGGGGCGGA+GGG - chr7.1:85202414-85202433 None:intergenic 60.0%
! CACCACCACCCTTTTCCCAC+CGG + chr7.1:85202343-85202362 MS.gene91521:CDS 60.0%
! GTTCTTCAGGTTCACGGCGG+TGG - chr7.1:85202260-85202279 None:intergenic 60.0%
!! GGGTCGGTTGGTGTTGCTGT+GGG - chr7.1:85202195-85202214 None:intergenic 60.0%
!! GGTGGTTGAAGTGGTGGTGG+TGG - chr7.1:85202059-85202078 None:intergenic 60.0%
!! GGTTGAAGTGGTGGTGGTGG+TGG - chr7.1:85202056-85202075 None:intergenic 60.0%
!! TGAAGTGGTGGTGGTGGTGG+TGG - chr7.1:85202053-85202072 None:intergenic 60.0%
!! TGGGTCGGTTGGTGTTGCTG+TGG - chr7.1:85202196-85202215 None:intergenic 60.0%
AGGGGCGGAGGGGTAGTAAG+AGG - chr7.1:85202403-85202422 None:intergenic 65.0%
CACGGCGGTGGAAGTTACGG+TGG - chr7.1:85202248-85202267 None:intergenic 65.0%
CTCCGGTGGGAAAAGGGTGG+TGG - chr7.1:85202348-85202367 None:intergenic 65.0%
GAAGCATGTGAGGGGCGGAG+GGG - chr7.1:85202413-85202432 None:intergenic 65.0%
GGCGGAGGGGTAGTAAGAGG+AGG - chr7.1:85202400-85202419 None:intergenic 65.0%
TGCTCTCTCCGCCGCCTTAC+CGG + chr7.1:85202434-85202453 MS.gene91521:CDS 65.0%
! CGGTGGGAAAAGGGTGGTGG+TGG - chr7.1:85202345-85202364 None:intergenic 65.0%
! GGAGATCGGTGGTGGTGAGG+AGG - chr7.1:85202379-85202398 None:intergenic 65.0%
! GGAGGAGATCGGTGGTGGTG+AGG - chr7.1:85202382-85202401 None:intergenic 65.0%
!! AGTGGTGGTGGTGGTGGTGG+TGG - chr7.1:85202050-85202069 None:intergenic 65.0%
GGGCTCCGGTGGGAAAAGGG+TGG - chr7.1:85202351-85202370 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 85201850 85202878 85201850 ID=MS.gene91521
chr7.1 mRNA 85201850 85202878 85201850 ID=MS.gene91521.t1;Parent=MS.gene91521
chr7.1 exon 85201850 85202878 85201850 ID=MS.gene91521.t1.exon1;Parent=MS.gene91521.t1
chr7.1 CDS 85201850 85202878 85201850 ID=cds.MS.gene91521.t1;Parent=MS.gene91521.t1
Gene Sequence

>MS.gene91521

ATGGACATAACCTTAACCCCAACTCCAACACCAACACCACCACCAACATCAATAGCACCAACCATATTAACAACCTCAACAACAACCTTAACTAAATCACCAGAACAACAACATGAAACTGAAACACCCACAACAAAATTCCCAACCTCAACAACACCAAAAATCTCACCTTTTTCAAATGGTGTTCTCAAACGTTTCCACCACCACCACCACCACCACTTCAACCACCACAACACCACCAACAACCATCAACCTACCATAACCTACAAAGAATGTCTCAAAAACCATGCAGCAAACCTAGGTGGTCATGCCCTAGATGGTTGTGGTGAATTCATGACATCTCCCACAGCAACACCAACCGACCCAACATCCTTAAAATGTGCTGCTTGTGGCTGCCACCGTAACTTCCACCGCCGTGAACCTGAAGAACCACCACTTTCCACCACAACTCATGTCATTGAATATCAACCTCACCACCGTCATCAACCACTTCCACCACCACCCTTTTCCCACCGGAGCCCAAATTCCTCCTCACCACCACCGATCTCCTCCTCTTACTACCCCTCCGCCCCTCACATGCTTCTTGCTCTCTCCGCCGCCTTACCGGAAAACGTTGCAGCTCCAAACCAAACCATGTTGATGAATTCTCACTCTAACAATTCTAGAAAGCGTTTCAGGACAAAGTTTACACAAGATCAGAAAGATAAGATGCTGAAATTTGCTGAGAAAGTTGGGTGGAAGATGCAGAAAAAAGATGATGAATTTGTTCATGAGTTTTGTAATGAGATTGGTGTTGATCGTAGTGTTCTTAAGGTTTGGATGCATAACAACAAGAACACTTTAGCCAAACGAGAAAACCTTAACAACAATGAGAATATTAATGATGGTGTTAAGAGTTTTCAGCTACCTCTTGAAGATGAAGAACACAAGAATGTTGAGATTCATGGTCTTAATCACAATCATTATCAGAATGAAGGTGGAGTTGTTGGAGTAACTGTTCGTGCTAATGGTTCATCATCTTCTTCTTAA
Protein sequence

>MS.gene91521.t1

MDITLTPTPTPTPPPTSIAPTILTTSTTTLTKSPEQQHETETPTTKFPTSTTPKISPFSNGVLKRFHHHHHHHFNHHNTTNNHQPTITYKECLKNHAANLGGHALDGCGEFMTSPTATPTDPTSLKCAACGCHRNFHRREPEEPPLSTTTHVIEYQPHHRHQPLPPPPFSHRSPNSSSPPPISSSYYPSAPHMLLALSAALPENVAAPNQTMLMNSHSNNSRKRFRTKFTQDQKDKMLKFAEKVGWKMQKKDDEFVHEFCNEIGVDRSVLKVWMHNNKNTLAKRENLNNNENINDGVKSFQLPLEDEEHKNVEIHGLNHNHYQNEGGVVGVTVRANGSSSSS