Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91800.t1 | XP_013443746.1 | 95.3 | 403 | 19 | 0 | 1 | 403 | 162 | 564 | 7.80E-226 | 792.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91800.t1 | Q9M219 | 46.0 | 402 | 214 | 2 | 1 | 401 | 155 | 554 | 7.2e-103 | 375.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91800.t1 | A0A072TKN3 | 95.3 | 403 | 19 | 0 | 1 | 403 | 162 | 564 | 5.6e-226 | 792.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene91800.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene91800 | 0.826479 | 2.65E-54 | -1.69E-46 |
| MS.gene050226 | MS.gene91800 | 0.810214 | 1.29E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene91800 | 0.808625 | 2.83E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene91800 | 0.804134 | 2.50E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene91800 | 0.805478 | 1.31E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene91800 | 0.809171 | 2.16E-50 | -1.69E-46 |
| MS.gene050724 | MS.gene91800 | 0.805746 | 1.15E-49 | -1.69E-46 |
| MS.gene051210 | MS.gene91800 | 0.802105 | 6.57E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene91800 | 0.801143 | 1.03E-48 | -1.69E-46 |
| MS.gene052323 | MS.gene91800 | 0.821249 | 4.47E-53 | -1.69E-46 |
| MS.gene052611 | MS.gene91800 | 0.835563 | 1.56E-56 | -1.69E-46 |
| MS.gene052612 | MS.gene91800 | 0.807825 | 4.18E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene91800 | 0.831641 | 1.49E-55 | -1.69E-46 |
| MS.gene052896 | MS.gene91800 | 0.8292 | 5.88E-55 | -1.69E-46 |
| MS.gene053008 | MS.gene91800 | 0.824643 | 7.22E-54 | -1.69E-46 |
| MS.gene055363 | MS.gene91800 | 0.990218 | 1.34E-181 | -1.69E-46 |
| MS.gene056552 | MS.gene91800 | 0.802084 | 6.63E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene91800 | 0.812202 | 4.77E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene91800 | 0.810322 | 1.22E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene91800 | 0.800035 | 1.74E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91800.t1 | MTR_8g005155 | 95.285 | 403 | 19 | 0 | 1 | 403 | 162 | 564 | 0.0 | 792 |
| MS.gene91800.t1 | MTR_7g080620 | 56.404 | 406 | 168 | 3 | 1 | 400 | 179 | 581 | 5.40e-162 | 473 |
| MS.gene91800.t1 | MTR_5g084810 | 21.914 | 324 | 241 | 5 | 70 | 391 | 262 | 575 | 1.16e-21 | 97.4 |
| MS.gene91800.t1 | MTR_7g093000 | 22.364 | 313 | 221 | 7 | 88 | 393 | 264 | 561 | 4.27e-20 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91800.t1 | AT3G60400 | 46.020 | 402 | 214 | 2 | 1 | 401 | 155 | 554 | 2.23e-126 | 376 |
| MS.gene91800.t1 | AT4G19650 | 21.696 | 401 | 283 | 7 | 1 | 391 | 205 | 584 | 4.52e-22 | 99.0 |
| MS.gene91800.t1 | AT4G19650 | 21.696 | 401 | 283 | 7 | 1 | 391 | 188 | 567 | 5.64e-22 | 98.6 |
| MS.gene91800.t1 | AT5G06811 | 24.615 | 325 | 219 | 8 | 76 | 390 | 262 | 570 | 8.75e-21 | 94.7 |
| MS.gene91800.t1 | AT5G45113 | 24.088 | 274 | 194 | 5 | 120 | 391 | 145 | 406 | 1.05e-18 | 87.8 |
| MS.gene91800.t1 | AT5G06810 | 27.801 | 241 | 150 | 7 | 157 | 390 | 351 | 574 | 2.52e-18 | 87.4 |
Find 77 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTAGAGTTTCAGGATTT+TGG | 0.108976 | 8.3:-81418062 | None:intergenic |
| TTTGATTGCCTTCTACATTT+AGG | 0.135769 | 8.3:+81417985 | MS.gene91800:CDS |
| GGGACACTCCTTAGAGCTTT+TGG | 0.239993 | 8.3:+81418113 | MS.gene91800:CDS |
| TAATTTCCTATGTCAGGATA+TGG | 0.244795 | 8.3:+81418092 | MS.gene91800:CDS |
| TCATGAAGCTCGAAATTTAT+TGG | 0.254864 | 8.3:-81418340 | None:intergenic |
| AAACATTTGATTCTTGAGTA+TGG | 0.263491 | 8.3:+81417460 | MS.gene91800:CDS |
| TTGATTGCCTTCTACATTTA+GGG | 0.265986 | 8.3:+81417986 | MS.gene91800:CDS |
| GAAAAGTGGTTCTGAGATAA+AGG | 0.272746 | 8.3:+81417159 | MS.gene91800:CDS |
| TTAAATTTCATGCATACTAT+TGG | 0.285045 | 8.3:+81417889 | MS.gene91800:CDS |
| AATTGCTCAAACCAATGTTT+TGG | 0.304518 | 8.3:-81418312 | None:intergenic |
| CTTTGTTTGTTGAAAAGATA+TGG | 0.308280 | 8.3:+81417187 | MS.gene91800:CDS |
| CATGAAGCTCGAAATTTATT+GGG | 0.313412 | 8.3:-81418339 | None:intergenic |
| ACCTTTATCATGCTCTTCAT+TGG | 0.329479 | 8.3:-81417806 | None:intergenic |
| TTCATGCATACTATTGGCTT+TGG | 0.365567 | 8.3:+81417895 | MS.gene91800:CDS |
| CATGTGATTTAAGATATTCA+TGG | 0.366992 | 8.3:-81417932 | None:intergenic |
| CCCAATGAAGAGCATGATAA+AGG | 0.371844 | 8.3:+81417805 | MS.gene91800:CDS |
| ATCTGAACCTCGGCTTAATT+CGG | 0.372746 | 8.3:-81418173 | None:intergenic |
| GGAGTTGTTGAGTCTCAATT+TGG | 0.376264 | 8.3:+81417570 | MS.gene91800:CDS |
| ATAGGTTGCTTTCTGATTTG+AGG | 0.392968 | 8.3:+81417299 | MS.gene91800:CDS |
| CCTTTATCATGCTCTTCATT+GGG | 0.406357 | 8.3:-81417805 | None:intergenic |
| AAAGATTAATTTCCTATGTC+AGG | 0.406425 | 8.3:+81418086 | MS.gene91800:CDS |
| CCATATGTGGGCTTTAGAAA+AGG | 0.410319 | 8.3:+81418197 | MS.gene91800:CDS |
| GGGCTATGGGTTTACGTGAA+TGG | 0.411227 | 8.3:+81417722 | MS.gene91800:CDS |
| TTATCGATGATGAGGTTGAT+AGG | 0.413270 | 8.3:+81417281 | MS.gene91800:CDS |
| ATGTTTGGTATGATGTTTGT+AGG | 0.414620 | 8.3:+81417371 | MS.gene91800:CDS |
| AAAAGTGTCCAAAAGCTCTA+AGG | 0.419374 | 8.3:-81418121 | None:intergenic |
| ATTCAATCCCTAAATGTAGA+AGG | 0.419800 | 8.3:-81417993 | None:intergenic |
| AGTGATGGTAAGGGGAAGAT+AGG | 0.419950 | 8.3:+81417418 | MS.gene91800:CDS |
| CATATGTGGGCTTTAGAAAA+GGG | 0.423473 | 8.3:+81418198 | MS.gene91800:CDS |
| ACCCATAGCCCTCATCAGAT+TGG | 0.427036 | 8.3:-81417710 | None:intergenic |
| CCCAATCTGATGAGGGCTAT+GGG | 0.435992 | 8.3:+81417709 | MS.gene91800:CDS |
| TTTGTAATGTGCAAATTGTT+GGG | 0.448783 | 8.3:+81417212 | MS.gene91800:CDS |
| GATTTGGGAGGGTGTGTTGA+AGG | 0.450135 | 8.3:+81417340 | MS.gene91800:CDS |
| AATTTCCTATGTCAGGATAT+GGG | 0.450989 | 8.3:+81418093 | MS.gene91800:CDS |
| GGAATGGATTCTAAAGGTCT+TGG | 0.453391 | 8.3:+81417631 | MS.gene91800:CDS |
| TCGGTTGATTCTACAAGGTT+CGG | 0.454814 | 8.3:+81417549 | MS.gene91800:CDS |
| AAGAACTATGCTCATGCGTT+GGG | 0.457899 | 8.3:+81417664 | MS.gene91800:CDS |
| AAAAGTGGTTCTGAGATAAA+GGG | 0.465819 | 8.3:+81417160 | MS.gene91800:CDS |
| TTGAAGGGAATGTGGATGTT+TGG | 0.467882 | 8.3:+81417356 | MS.gene91800:CDS |
| AGAAGAGGAGTTGATTGAAA+AGG | 0.470802 | 8.3:+81417483 | MS.gene91800:CDS |
| CCCATAGCCCTCATCAGATT+GGG | 0.475310 | 8.3:-81417709 | None:intergenic |
| AAACTATTCCATTGCAAGCA+TGG | 0.484064 | 8.3:+81418233 | MS.gene91800:CDS |
| TCCCAATCTGATGAGGGCTA+TGG | 0.486736 | 8.3:+81417708 | MS.gene91800:CDS |
| GATTCTTGAGTATGGAGAAG+AGG | 0.500875 | 8.3:+81417468 | MS.gene91800:CDS |
| CGAGGTTCAGATTCCATATG+TGG | 0.503568 | 8.3:+81418184 | MS.gene91800:CDS |
| ATTTGGGAGGGTGTGTTGAA+GGG | 0.510382 | 8.3:+81417341 | MS.gene91800:CDS |
| GAAGAACTATGCTCATGCGT+TGG | 0.510932 | 8.3:+81417663 | MS.gene91800:CDS |
| TTATGATTTGAGTGATGGTA+AGG | 0.517430 | 8.3:+81417408 | MS.gene91800:CDS |
| AGGGTGTGTTGAAGGGAATG+TGG | 0.519392 | 8.3:+81417348 | MS.gene91800:CDS |
| GGGAAGATAGGTGAACTCAT+TGG | 0.519466 | 8.3:+81417430 | MS.gene91800:CDS |
| CACATTGGAATGGATTCTAA+AGG | 0.534379 | 8.3:+81417625 | MS.gene91800:CDS |
| ACCCGGCTGCTCCAAAACAT+TGG | 0.539925 | 8.3:+81418301 | MS.gene91800:CDS |
| GTTGCTTTCTGATTTGAGGT+TGG | 0.540360 | 8.3:+81417303 | MS.gene91800:CDS |
| TTAAGGCAATTCATGATGCA+AGG | 0.553764 | 8.3:+81417842 | MS.gene91800:CDS |
| GCTGTTGAAACACATTGGAA+TGG | 0.554139 | 8.3:+81417615 | MS.gene91800:CDS |
| CGAATCTTCCCAATCTGATG+AGG | 0.559311 | 8.3:+81417701 | MS.gene91800:CDS |
| CATGATAAAGGTTATCAAAG+TGG | 0.567037 | 8.3:+81417817 | MS.gene91800:CDS |
| TTGTAGATTCAGTGTCGAGA+AGG | 0.567935 | 8.3:+81417516 | MS.gene91800:CDS |
| AGTGTCCCATATCCTGACAT+AGG | 0.569168 | 8.3:-81418098 | None:intergenic |
| AGTCGCAACCATGCTTGCAA+TGG | 0.573982 | 8.3:-81418241 | None:intergenic |
| ATGATTTGAGTGATGGTAAG+GGG | 0.577556 | 8.3:+81417410 | MS.gene91800:CDS |
| AATATCTTAAATCACATGCA+TGG | 0.582398 | 8.3:+81417937 | MS.gene91800:CDS |
| ATAGCTCGGTTGATTCTACA+AGG | 0.584030 | 8.3:+81417544 | MS.gene91800:CDS |
| AATTTACTCATATTGTGAGA+CGG | 0.584295 | 8.3:-81417868 | None:intergenic |
| TATGATTTGAGTGATGGTAA+GGG | 0.587020 | 8.3:+81417409 | MS.gene91800:CDS |
| CATGGTTGCGACTAGTGACA+AGG | 0.592546 | 8.3:+81418251 | MS.gene91800:CDS |
| TAGATTCAGTGTCGAGAAGG+AGG | 0.595864 | 8.3:+81417519 | MS.gene91800:CDS |
| TTGAAGCTGTTGAAACACAT+TGG | 0.621474 | 8.3:+81417610 | MS.gene91800:CDS |
| GAATCTTCCCAATCTGATGA+GGG | 0.621938 | 8.3:+81417702 | MS.gene91800:CDS |
| CACATATGGAATCTGAACCT+CGG | 0.628454 | 8.3:-81418183 | None:intergenic |
| AGATAGGTGAACTCATTGGA+AGG | 0.629844 | 8.3:+81417434 | MS.gene91800:CDS |
| AAGTCAAAACATATAAACGC+CGG | 0.641278 | 8.3:-81418144 | None:intergenic |
| GTGGTTCTGAGATAAAGGGT+AGG | 0.659181 | 8.3:+81417164 | MS.gene91800:CDS |
| TCGAGAAGGAGGAAATAGCT+CGG | 0.662293 | 8.3:+81417530 | MS.gene91800:CDS |
| GAGGTTCAGATTCCATATGT+GGG | 0.667584 | 8.3:+81418185 | MS.gene91800:CDS |
| TAGAGAACCGAATTAAGCCG+AGG | 0.677310 | 8.3:+81418166 | MS.gene91800:CDS |
| ATGGTTGCGACTAGTGACAA+GGG | 0.685800 | 8.3:+81418252 | MS.gene91800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTTCATGCATACTAT+TGG | + | chr8.3:81417889-81417908 | MS.gene91800:CDS | 20.0% |
| !!! | TTAACTTTTCCTTTTGTTTT+TGG | + | chr8.3:81417241-81417260 | MS.gene91800:CDS | 20.0% |
| ! | AAACATTTGATTCTTGAGTA+TGG | + | chr8.3:81417460-81417479 | MS.gene91800:CDS | 25.0% |
| ! | AAAGATTAATTTCCTATGTC+AGG | + | chr8.3:81418086-81418105 | MS.gene91800:CDS | 25.0% |
| ! | AATATCTTAAATCACATGCA+TGG | + | chr8.3:81417937-81417956 | MS.gene91800:CDS | 25.0% |
| ! | AATTTACTCATATTGTGAGA+CGG | - | chr8.3:81417871-81417890 | None:intergenic | 25.0% |
| ! | TTTGTAATGTGCAAATTGTT+GGG | + | chr8.3:81417212-81417231 | MS.gene91800:CDS | 25.0% |
| !! | CATGTGATTTAAGATATTCA+TGG | - | chr8.3:81417935-81417954 | None:intergenic | 25.0% |
| !! | CTTTGTTTGTTGAAAAGATA+TGG | + | chr8.3:81417187-81417206 | MS.gene91800:CDS | 25.0% |
| !! | TTTTCGATAAAATCAAGGAT+GGG | + | chr8.3:81417746-81417765 | MS.gene91800:CDS | 25.0% |
| !! | TTTTGTAATGTGCAAATTGT+TGG | + | chr8.3:81417211-81417230 | MS.gene91800:CDS | 25.0% |
| !!! | ATGGTTTTTCGATAAAATCA+AGG | + | chr8.3:81417741-81417760 | MS.gene91800:CDS | 25.0% |
| !!! | GTGTTTTTGGATTTTGATTT+GGG | + | chr8.3:81417325-81417344 | MS.gene91800:CDS | 25.0% |
| !!! | TTTTTCGATAAAATCAAGGA+TGG | + | chr8.3:81417745-81417764 | MS.gene91800:CDS | 25.0% |
| AAGTCAAAACATATAAACGC+CGG | - | chr8.3:81418147-81418166 | None:intergenic | 30.0% | |
| AATTTCCTATGTCAGGATAT+GGG | + | chr8.3:81418093-81418112 | MS.gene91800:CDS | 30.0% | |
| ATGTTTGGTATGATGTTTGT+AGG | + | chr8.3:81417371-81417390 | MS.gene91800:CDS | 30.0% | |
| ATTCAATCCCTAAATGTAGA+AGG | - | chr8.3:81417996-81418015 | None:intergenic | 30.0% | |
| CATGAAGCTCGAAATTTATT+GGG | - | chr8.3:81418342-81418361 | None:intergenic | 30.0% | |
| CATGATAAAGGTTATCAAAG+TGG | + | chr8.3:81417817-81417836 | MS.gene91800:CDS | 30.0% | |
| TAATTTCCTATGTCAGGATA+TGG | + | chr8.3:81418092-81418111 | MS.gene91800:CDS | 30.0% | |
| TATGATTTGAGTGATGGTAA+GGG | + | chr8.3:81417409-81417428 | MS.gene91800:CDS | 30.0% | |
| TCATGAAGCTCGAAATTTAT+TGG | - | chr8.3:81418343-81418362 | None:intergenic | 30.0% | |
| TTATGATTTGAGTGATGGTA+AGG | + | chr8.3:81417408-81417427 | MS.gene91800:CDS | 30.0% | |
| TTGATTGCCTTCTACATTTA+GGG | + | chr8.3:81417986-81418005 | MS.gene91800:CDS | 30.0% | |
| TTTGATTGCCTTCTACATTT+AGG | + | chr8.3:81417985-81418004 | MS.gene91800:CDS | 30.0% | |
| ! | AATTGCTCAAACCAATGTTT+TGG | - | chr8.3:81418315-81418334 | None:intergenic | 30.0% |
| ! | GTGTTTTATGATTTGAGTGA+TGG | + | chr8.3:81417403-81417422 | MS.gene91800:CDS | 30.0% |
| !! | AAAAGTGGTTCTGAGATAAA+GGG | + | chr8.3:81417160-81417179 | MS.gene91800:CDS | 30.0% |
| !! | AGGTTATCAAAGTGGTTTTA+AGG | + | chr8.3:81417825-81417844 | MS.gene91800:CDS | 30.0% |
| !!! | ATCTTTTTCTCTAGAGTTTC+AGG | - | chr8.3:81418072-81418091 | None:intergenic | 30.0% |
| !!! | GGTGTTTTTGGATTTTGATT+TGG | + | chr8.3:81417324-81417343 | MS.gene91800:CDS | 30.0% |
| !!! | TTTTGGATTTTGATTTGGGA+GGG | + | chr8.3:81417329-81417348 | MS.gene91800:CDS | 30.0% |
| !!! | TTTTTGGATTTTGATTTGGG+AGG | + | chr8.3:81417328-81417347 | MS.gene91800:CDS | 30.0% |
| AAACTATTCCATTGCAAGCA+TGG | + | chr8.3:81418233-81418252 | MS.gene91800:CDS | 35.0% | |
| ACCTTTATCATGCTCTTCAT+TGG | - | chr8.3:81417809-81417828 | None:intergenic | 35.0% | |
| ATGATTTGAGTGATGGTAAG+GGG | + | chr8.3:81417410-81417429 | MS.gene91800:CDS | 35.0% | |
| CCTTTATCATGCTCTTCATT+GGG | - | chr8.3:81417808-81417827 | None:intergenic | 35.0% | |
| TGCGTTGGGAACAATAAAAA+TGG | + | chr8.3:81417678-81417697 | MS.gene91800:CDS | 35.0% | |
| TTAAGGCAATTCATGATGCA+AGG | + | chr8.3:81417842-81417861 | MS.gene91800:CDS | 35.0% | |
| TTGAAGCTGTTGAAACACAT+TGG | + | chr8.3:81417610-81417629 | MS.gene91800:CDS | 35.0% | |
| ! | AGAAGAGGAGTTGATTGAAA+AGG | + | chr8.3:81417483-81417502 | MS.gene91800:CDS | 35.0% |
| ! | ATAGGTTGCTTTCTGATTTG+AGG | + | chr8.3:81417299-81417318 | MS.gene91800:CDS | 35.0% |
| ! | CACATTGGAATGGATTCTAA+AGG | + | chr8.3:81417625-81417644 | MS.gene91800:CDS | 35.0% |
| ! | TGGGAATCATAAGCTTTTAG+TGG | + | chr8.3:81417765-81417784 | MS.gene91800:CDS | 35.0% |
| ! | TTATCGATGATGAGGTTGAT+AGG | + | chr8.3:81417281-81417300 | MS.gene91800:CDS | 35.0% |
| !! | AAAAGTGTCCAAAAGCTCTA+AGG | - | chr8.3:81418124-81418143 | None:intergenic | 35.0% |
| !! | CATATGTGGGCTTTAGAAAA+GGG | + | chr8.3:81418198-81418217 | MS.gene91800:CDS | 35.0% |
| !! | CCGGGTGAATTTTAAAAACA+CGG | - | chr8.3:81418287-81418306 | None:intergenic | 35.0% |
| !! | GAAAAGTGGTTCTGAGATAA+AGG | + | chr8.3:81417159-81417178 | MS.gene91800:CDS | 35.0% |
| !! | TTCATGCATACTATTGGCTT+TGG | + | chr8.3:81417895-81417914 | MS.gene91800:CDS | 35.0% |
| !!! | CCGTGTTTTTAAAATTCACC+CGG | + | chr8.3:81418284-81418303 | MS.gene91800:CDS | 35.0% |
| !!! | GGATTTTGGCTTAGAATCTT+TGG | - | chr8.3:81418051-81418070 | None:intergenic | 35.0% |
| !!! | TCTCTAGAGTTTCAGGATTT+TGG | - | chr8.3:81418065-81418084 | None:intergenic | 35.0% |
| !!! | TGATTTGAGGTTGGTGTTTT+TGG | + | chr8.3:81417312-81417331 | MS.gene91800:CDS | 35.0% |
| AAGAACTATGCTCATGCGTT+GGG | + | chr8.3:81417664-81417683 | MS.gene91800:CDS | 40.0% | |
| AGATAGGTGAACTCATTGGA+AGG | + | chr8.3:81417434-81417453 | MS.gene91800:CDS | 40.0% | |
| ATCTGAACCTCGGCTTAATT+CGG | - | chr8.3:81418176-81418195 | None:intergenic | 40.0% | |
| CACATATGGAATCTGAACCT+CGG | - | chr8.3:81418186-81418205 | None:intergenic | 40.0% | |
| GAATCTTCCCAATCTGATGA+GGG | + | chr8.3:81417702-81417721 | MS.gene91800:CDS | 40.0% | |
| GAGGTTCAGATTCCATATGT+GGG | + | chr8.3:81418185-81418204 | MS.gene91800:CDS | 40.0% | |
| GATTCTTGAGTATGGAGAAG+AGG | + | chr8.3:81417468-81417487 | MS.gene91800:CDS | 40.0% | |
| GCTGTTGAAACACATTGGAA+TGG | + | chr8.3:81417615-81417634 | MS.gene91800:CDS | 40.0% | |
| GGAGTTGTTGAGTCTCAATT+TGG | + | chr8.3:81417570-81417589 | MS.gene91800:CDS | 40.0% | |
| TTGAAGGGAATGTGGATGTT+TGG | + | chr8.3:81417356-81417375 | MS.gene91800:CDS | 40.0% | |
| ! | AGAGCTTTTGGACACTTTTC+CGG | + | chr8.3:81418125-81418144 | MS.gene91800:CDS | 40.0% |
| ! | ATAGCTCGGTTGATTCTACA+AGG | + | chr8.3:81417544-81417563 | MS.gene91800:CDS | 40.0% |
| ! | CCCAATGAAGAGCATGATAA+AGG | + | chr8.3:81417805-81417824 | MS.gene91800:CDS | 40.0% |
| ! | GGAATGGATTCTAAAGGTCT+TGG | + | chr8.3:81417631-81417650 | MS.gene91800:CDS | 40.0% |
| ! | GTTGCTTTCTGATTTGAGGT+TGG | + | chr8.3:81417303-81417322 | MS.gene91800:CDS | 40.0% |
| ! | TCGGTTGATTCTACAAGGTT+CGG | + | chr8.3:81417549-81417568 | MS.gene91800:CDS | 40.0% |
| ! | TTGTAGATTCAGTGTCGAGA+AGG | + | chr8.3:81417516-81417535 | MS.gene91800:CDS | 40.0% |
| !! | ACTAGTGACAAGGGTTTTGT+TGG | + | chr8.3:81418261-81418280 | MS.gene91800:CDS | 40.0% |
| !! | CCATATGTGGGCTTTAGAAA+AGG | + | chr8.3:81418197-81418216 | MS.gene91800:CDS | 40.0% |
| !!! | CCTTTTCTAAAGCCCACATA+TGG | - | chr8.3:81418200-81418219 | None:intergenic | 40.0% |
| AGGGGGATTTATCGATGATG+AGG | + | chr8.3:81417273-81417292 | MS.gene91800:CDS | 45.0% | |
| AGTGATGGTAAGGGGAAGAT+AGG | + | chr8.3:81417418-81417437 | MS.gene91800:CDS | 45.0% | |
| AGTGTCCCATATCCTGACAT+AGG | - | chr8.3:81418101-81418120 | None:intergenic | 45.0% | |
| ATCGATAAATCCCCCTTCCT+CGG | - | chr8.3:81417269-81417288 | None:intergenic | 45.0% | |
| ATGGTTGCGACTAGTGACAA+GGG | + | chr8.3:81418252-81418271 | MS.gene91800:CDS | 45.0% | |
| CGAATCTTCCCAATCTGATG+AGG | + | chr8.3:81417701-81417720 | MS.gene91800:CDS | 45.0% | |
| CGAGGTTCAGATTCCATATG+TGG | + | chr8.3:81418184-81418203 | MS.gene91800:CDS | 45.0% | |
| GAAGAACTATGCTCATGCGT+TGG | + | chr8.3:81417663-81417682 | MS.gene91800:CDS | 45.0% | |
| GGGAAGATAGGTGAACTCAT+TGG | + | chr8.3:81417430-81417449 | MS.gene91800:CDS | 45.0% | |
| TAGAGAACCGAATTAAGCCG+AGG | + | chr8.3:81418166-81418185 | MS.gene91800:CDS | 45.0% | |
| TCCTCGGCACCAAAAACAAA+AGG | - | chr8.3:81417253-81417272 | None:intergenic | 45.0% | |
| TCGAGAAGGAGGAAATAGCT+CGG | + | chr8.3:81417530-81417549 | MS.gene91800:CDS | 45.0% | |
| ! | ATTTGGGAGGGTGTGTTGAA+GGG | + | chr8.3:81417341-81417360 | MS.gene91800:CDS | 45.0% |
| ! | TAGATTCAGTGTCGAGAAGG+AGG | + | chr8.3:81417519-81417538 | MS.gene91800:CDS | 45.0% |
| !! | GTGGTTCTGAGATAAAGGGT+AGG | + | chr8.3:81417164-81417183 | MS.gene91800:CDS | 45.0% |
| !!! | AACCAATGTTTTGGAGCAGC+CGG | - | chr8.3:81418306-81418325 | None:intergenic | 45.0% |
| !!! | TCCTTTTGTTTTTGGTGCCG+AGG | + | chr8.3:81417249-81417268 | MS.gene91800:CDS | 45.0% |
| !!! | TTGTTTTTGGTGCCGAGGAA+GGG | + | chr8.3:81417254-81417273 | MS.gene91800:CDS | 45.0% |
| !!! | TTTGTTTTTGGTGCCGAGGA+AGG | + | chr8.3:81417253-81417272 | MS.gene91800:CDS | 45.0% |
| ACCCATAGCCCTCATCAGAT+TGG | - | chr8.3:81417713-81417732 | None:intergenic | 50.0% | |
| AGGGTGTGTTGAAGGGAATG+TGG | + | chr8.3:81417348-81417367 | MS.gene91800:CDS | 50.0% | |
| AGTCGCAACCATGCTTGCAA+TGG | - | chr8.3:81418244-81418263 | None:intergenic | 50.0% | |
| CATGGTTGCGACTAGTGACA+AGG | + | chr8.3:81418251-81418270 | MS.gene91800:CDS | 50.0% | |
| CCCAATCTGATGAGGGCTAT+GGG | + | chr8.3:81417709-81417728 | MS.gene91800:CDS | 50.0% | |
| CCCATAGCCCTCATCAGATT+GGG | - | chr8.3:81417712-81417731 | None:intergenic | 50.0% | |
| GGGCTATGGGTTTACGTGAA+TGG | + | chr8.3:81417722-81417741 | MS.gene91800:CDS | 50.0% | |
| TCCCAATCTGATGAGGGCTA+TGG | + | chr8.3:81417708-81417727 | MS.gene91800:CDS | 50.0% | |
| ! | GATTTGGGAGGGTGTGTTGA+AGG | + | chr8.3:81417340-81417359 | MS.gene91800:CDS | 50.0% |
| ! | GGGACACTCCTTAGAGCTTT+TGG | + | chr8.3:81418113-81418132 | MS.gene91800:CDS | 50.0% |
| !!! | ACCAATGTTTTGGAGCAGCC+GGG | - | chr8.3:81418305-81418324 | None:intergenic | 50.0% |
| !!! | TGTTTTTGGTGCCGAGGAAG+GGG | + | chr8.3:81417255-81417274 | MS.gene91800:CDS | 50.0% |
| ACCCGGCTGCTCCAAAACAT+TGG | + | chr8.3:81418301-81418320 | MS.gene91800:CDS | 55.0% | |
| !!! | GTTTTTGGTGCCGAGGAAGG+GGG | + | chr8.3:81417256-81417275 | MS.gene91800:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 81417151 | 81418362 | 81417151 | ID=MS.gene91800 |
| chr8.3 | mRNA | 81417151 | 81418362 | 81417151 | ID=MS.gene91800.t1;Parent=MS.gene91800 |
| chr8.3 | exon | 81417151 | 81418362 | 81417151 | ID=MS.gene91800.t1.exon1;Parent=MS.gene91800.t1 |
| chr8.3 | CDS | 81417151 | 81418362 | 81417151 | ID=cds.MS.gene91800.t1;Parent=MS.gene91800.t1 |
| Gene Sequence |
| Protein sequence |
