AlfalfaGEDB | MS.gene91800

M. sativa cultivar XinJiangDaYe / MS.gene91800

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91800.t1	XP_013443746.1	95.3	403	19	0	1	403	162	564	7.80E-226	792.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91800.t1	Q9M219	46.0	402	214	2	1	401	155	554	7.2e-103	375.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91800.t1	A0A072TKN3	95.3	403	19	0	1	403	162	564	5.6e-226	792.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene91800.t1	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene91800	0.826479	2.65E-54	-1.69E-46
MS.gene050226	MS.gene91800	0.810214	1.29E-50	-1.69E-46
MS.gene050227	MS.gene91800	0.808625	2.83E-50	-1.69E-46
MS.gene050228	MS.gene91800	0.804134	2.50E-49	-1.69E-46
MS.gene050719	MS.gene91800	0.805478	1.31E-49	-1.69E-46
MS.gene050721	MS.gene91800	0.809171	2.16E-50	-1.69E-46
MS.gene050724	MS.gene91800	0.805746	1.15E-49	-1.69E-46
MS.gene051210	MS.gene91800	0.802105	6.57E-49	-1.69E-46
MS.gene052020	MS.gene91800	0.801143	1.03E-48	-1.69E-46
MS.gene052323	MS.gene91800	0.821249	4.47E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91800.t1	MTR_8g005155	95.285	403	19	0	1	403	162	564	0.0	792
MS.gene91800.t1	MTR_7g080620	56.404	406	168	3	1	400	179	581	5.40e-162	473
MS.gene91800.t1	MTR_5g084810	21.914	324	241	5	70	391	262	575	1.16e-21	97.4
MS.gene91800.t1	MTR_7g093000	22.364	313	221	7	88	393	264	561	4.27e-20	92.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91800.t1	AT3G60400	46.020	402	214	2	1	401	155	554	2.23e-126	376
MS.gene91800.t1	AT4G19650	21.696	401	283	7	1	391	205	584	4.52e-22	99.0
MS.gene91800.t1	AT4G19650	21.696	401	283	7	1	391	188	567	5.64e-22	98.6
MS.gene91800.t1	AT5G06811	24.615	325	219	8	76	390	262	570	8.75e-21	94.7
MS.gene91800.t1	AT5G45113	24.088	274	194	5	120	391	145	406	1.05e-18	87.8
MS.gene91800.t1	AT5G06810	27.801	241	150	7	157	390	351	574	2.52e-18	87.4

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Find 77 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGTTCTGAGATAAA+GGG	0.465819	8.3:+81417160	MS.gene91800:CDS
AAAAGTGTCCAAAAGCTCTA+AGG	0.419374	8.3:-81418121	None:intergenic
AAACATTTGATTCTTGAGTA+TGG	0.263491	8.3:+81417460	MS.gene91800:CDS
AAACTATTCCATTGCAAGCA+TGG	0.484064	8.3:+81418233	MS.gene91800:CDS
AAAGATTAATTTCCTATGTC+AGG	0.406425	8.3:+81418086	MS.gene91800:CDS
AAGAACTATGCTCATGCGTT+GGG	0.457899	8.3:+81417664	MS.gene91800:CDS
AAGTCAAAACATATAAACGC+CGG	0.641278	8.3:-81418144	None:intergenic
AATATCTTAAATCACATGCA+TGG	0.582398	8.3:+81417937	MS.gene91800:CDS
AATTGCTCAAACCAATGTTT+TGG	0.304518	8.3:-81418312	None:intergenic
AATTTACTCATATTGTGAGA+CGG	0.584295	8.3:-81417868	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTCAAAACATATAAACGC+CGG	-	chr8.3:81418147-81418166	None:intergenic	30.0%
AATTTCCTATGTCAGGATAT+GGG	+	chr8.3:81418093-81418112	MS.gene91800:CDS	30.0%
ATGTTTGGTATGATGTTTGT+AGG	+	chr8.3:81417371-81417390	MS.gene91800:CDS	30.0%
ATTCAATCCCTAAATGTAGA+AGG	-	chr8.3:81417996-81418015	None:intergenic	30.0%
CATGAAGCTCGAAATTTATT+GGG	-	chr8.3:81418342-81418361	None:intergenic	30.0%
CATGATAAAGGTTATCAAAG+TGG	+	chr8.3:81417817-81417836	MS.gene91800:CDS	30.0%
TAATTTCCTATGTCAGGATA+TGG	+	chr8.3:81418092-81418111	MS.gene91800:CDS	30.0%
TATGATTTGAGTGATGGTAA+GGG	+	chr8.3:81417409-81417428	MS.gene91800:CDS	30.0%
TCATGAAGCTCGAAATTTAT+TGG	-	chr8.3:81418343-81418362	None:intergenic	30.0%
TTATGATTTGAGTGATGGTA+AGG	+	chr8.3:81417408-81417427	MS.gene91800:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	81417151	81418362	81417151	ID=MS.gene91800
chr8.3	mRNA	81417151	81418362	81417151	ID=MS.gene91800.t1;Parent=MS.gene91800
chr8.3	exon	81417151	81418362	81417151	ID=MS.gene91800.t1.exon1;Parent=MS.gene91800.t1
chr8.3	CDS	81417151	81418362	81417151	ID=cds.MS.gene91800.t1;Parent=MS.gene91800.t1

Gene Sequence

>MS.gene91800

ATGTTTAGGAAAAGTGGTTCTGAGATAAAGGGTAGGCTTTGTTTGTTGAAAAGATATGGTTTTTGTAATGTGCAAATTGTTGGGATTTGTTTAACTTTTCCTTTTGTTTTTGGTGCCGAGGAAGGGGGATTTATCGATGATGAGGTTGATAGGTTGCTTTCTGATTTGAGGTTGGTGTTTTTGGATTTTGATTTGGGAGGGTGTGTTGAAGGGAATGTGGATGTTTGGTATGATGTTTGTAGGAAAATTAAAGTGTTTTATGATTTGAGTGATGGTAAGGGGAAGATAGGTGAACTCATTGGAAGGAATAAACATTTGATTCTTGAGTATGGAGAAGAGGAGTTGATTGAAAAGGTTGAGTTTTTTTGTAGATTCAGTGTCGAGAAGGAGGAAATAGCTCGGTTGATTCTACAAGGTTCGGAGTTGTTGAGTCTCAATTTGGAAGCGACGATTAACGTGTTGAAGCTGTTGAAACACATTGGAATGGATTCTAAAGGTCTTGGTGATGTGAAGAAGAACTATGCTCATGCGTTGGGAACAATAAAAATGGCGAATCTTCCCAATCTGATGAGGGCTATGGGTTTACGTGAATGGTTTTTCGATAAAATCAAGGATGGGAATCATAAGCTTTTAGTGGATTTTATCACAAGCTATCCCAATGAAGAGCATGATAAAGGTTATCAAAGTGGTTTTAAGGCAATTCATGATGCAAGGTTACCGTCTCACAATATGAGTAAATTAAATTTCATGCATACTATTGGCTTTGGTGAAAATGCTATAACCATGAATATCTTAAATCACATGCATGGAACAAGTGAAGAGTTACAGAAAAGATTTGATTGCCTTCTACATTTAGGGATTGAATTCTCAAAACTGTGTAAGATAATCACAAAGCTACCAAAGATTCTAAGCCAAAATCCTGAAACTCTAGAGAAAAAGATTAATTTCCTATGTCAGGATATGGGACACTCCTTAGAGCTTTTGGACACTTTTCCGGCGTTTATATGTTTTGACTTAGAGAACCGAATTAAGCCGAGGTTCAGATTCCATATGTGGGCTTTAGAAAAGGGATTGTATTCAAAAAACTATTCCATTGCAAGCATGGTTGCGACTAGTGACAAGGGTTTTGTTGGCCGTGTTTTTAAAATTCACCCGGCTGCTCCAAAACATTGGTTTGAGCAATTCTATCCCAATAAATTTCGAGCTTCATGA

Protein sequence

>MS.gene91800.t1

MFRKSGSEIKGRLCLLKRYGFCNVQIVGICLTFPFVFGAEEGGFIDDEVDRLLSDLRLVFLDFDLGGCVEGNVDVWYDVCRKIKVFYDLSDGKGKIGELIGRNKHLILEYGEEELIEKVEFFCRFSVEKEEIARLILQGSELLSLNLEATINVLKLLKHIGMDSKGLGDVKKNYAHALGTIKMANLPNLMRAMGLREWFFDKIKDGNHKLLVDFITSYPNEEHDKGYQSGFKAIHDARLPSHNMSKLNFMHTIGFGENAITMNILNHMHGTSEELQKRFDCLLHLGIEFSKLCKIITKLPKILSQNPETLEKKINFLCQDMGHSLELLDTFPAFICFDLENRIKPRFRFHMWALEKGLYSKNYSIASMVATSDKGFVGRVFKIHPAAPKHWFEQFYPNKFRAS