Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064797.t1 | XP_003603838.1 | 99.4 | 359 | 2 | 0 | 1 | 359 | 1 | 359 | 7.50E-212 | 746.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064797.t1 | Q39227 | 86.8 | 355 | 47 | 0 | 1 | 355 | 1 | 355 | 4.1e-190 | 665.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064797.t1 | G7J5X1 | 99.4 | 359 | 2 | 0 | 1 | 359 | 1 | 359 | 5.4e-212 | 746.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene064797 | -0.811596 | 6.47E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene064797 | -0.803507 | 3.37E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene064797 | -0.806697 | 7.25E-50 | -1.69E-46 |
| MS.gene050330 | MS.gene064797 | 0.845258 | 4.54E-59 | -1.69E-46 |
| MS.gene050750 | MS.gene064797 | -0.834752 | 2.50E-56 | -1.69E-46 |
| MS.gene050905 | MS.gene064797 | 0.830046 | 3.66E-55 | -1.69E-46 |
| MS.gene050953 | MS.gene064797 | -0.841324 | 5.09E-58 | -1.69E-46 |
| MS.gene051452 | MS.gene064797 | -0.804767 | 1.84E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene064797 | -0.83059 | 2.70E-55 | -1.69E-46 |
| MS.gene052309 | MS.gene064797 | 0.850121 | 2.08E-60 | -1.69E-46 |
| MS.gene052358 | MS.gene064797 | 0.854481 | 1.20E-61 | -1.69E-46 |
| MS.gene052361 | MS.gene064797 | 0.819172 | 1.34E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene064797 | -0.805821 | 1.11E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene064797 | -0.815269 | 1.01E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene064797 | -0.815663 | 8.24E-52 | -1.69E-46 |
| MS.gene053054 | MS.gene064797 | 0.823731 | 1.18E-53 | -1.69E-46 |
| MS.gene053145 | MS.gene064797 | -0.800253 | 1.57E-48 | -1.69E-46 |
| MS.gene05415 | MS.gene064797 | -0.817579 | 3.07E-52 | -1.69E-46 |
| MS.gene054160 | MS.gene064797 | -0.806535 | 7.85E-50 | -1.69E-46 |
| MS.gene054405 | MS.gene064797 | -0.83571 | 1.43E-56 | -1.69E-46 |
| MS.gene054657 | MS.gene064797 | -0.808786 | 2.61E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene064797 | -0.813561 | 2.40E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene064797 | -0.82667 | 2.39E-54 | -1.69E-46 |
| MS.gene055818 | MS.gene064797 | -0.854466 | 1.21E-61 | -1.69E-46 |
| MS.gene056969 | MS.gene064797 | 0.824284 | 8.77E-54 | -1.69E-46 |
| MS.gene056971 | MS.gene064797 | 0.815968 | 7.04E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene064797 | -0.812784 | 3.56E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene064797 | -0.832156 | 1.11E-55 | -1.69E-46 |
| MS.gene057127 | MS.gene064797 | 0.815214 | 1.04E-51 | -1.69E-46 |
| MS.gene05795 | MS.gene064797 | -0.819112 | 1.38E-52 | -1.69E-46 |
| MS.gene058139 | MS.gene064797 | -0.804435 | 2.16E-49 | -1.69E-46 |
| MS.gene058498 | MS.gene064797 | -0.845606 | 3.66E-59 | -1.69E-46 |
| MS.gene058500 | MS.gene064797 | -0.824243 | 8.97E-54 | -1.69E-46 |
| MS.gene058502 | MS.gene064797 | -0.806941 | 6.44E-50 | -1.69E-46 |
| MS.gene059569 | MS.gene064797 | -0.814758 | 1.31E-51 | -1.69E-46 |
| MS.gene05979 | MS.gene064797 | -0.810119 | 1.35E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene064797 | -0.851921 | 6.48E-61 | -1.69E-46 |
| MS.gene060634 | MS.gene064797 | 0.805387 | 1.37E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene064797 | -0.806768 | 7.01E-50 | -1.69E-46 |
| MS.gene060685 | MS.gene064797 | -0.812438 | 4.24E-51 | -1.69E-46 |
| MS.gene060879 | MS.gene064797 | -0.80237 | 5.79E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene064797 | 0.840261 | 9.68E-58 | -1.69E-46 |
| MS.gene061114 | MS.gene064797 | 0.823134 | 1.63E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene77896 | MS.gene064797 | PPI |
| MS.gene064797 | MS.gene91862 | PPI |
| MS.gene92683 | MS.gene064797 | PPI |
| MS.gene064797 | MS.gene46629 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064797.t1 | MTR_3g114780 | 99.167 | 360 | 3 | 0 | 1 | 360 | 1 | 360 | 0.0 | 744 |
| MS.gene064797.t1 | MTR_3g032530 | 41.369 | 336 | 179 | 4 | 39 | 359 | 8 | 340 | 1.57e-87 | 268 |
| MS.gene064797.t1 | MTR_3g032530 | 43.144 | 299 | 154 | 3 | 74 | 359 | 2 | 297 | 2.24e-84 | 258 |
| MS.gene064797.t1 | MTR_1g014690 | 27.155 | 232 | 145 | 5 | 77 | 290 | 72 | 297 | 4.49e-15 | 75.9 |
| MS.gene064797.t1 | MTR_1g014690 | 28.743 | 167 | 115 | 2 | 127 | 290 | 77 | 242 | 3.56e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064797.t1 | AT1G20330 | 86.761 | 355 | 47 | 0 | 1 | 355 | 1 | 355 | 0.0 | 665 |
| MS.gene064797.t1 | AT1G76090 | 81.742 | 356 | 65 | 0 | 1 | 356 | 1 | 356 | 0.0 | 643 |
| MS.gene064797.t1 | AT5G13710 | 40.729 | 329 | 183 | 2 | 39 | 355 | 8 | 336 | 5.81e-87 | 266 |
| MS.gene064797.t1 | AT5G13710 | 40.729 | 329 | 183 | 2 | 39 | 355 | 8 | 336 | 5.81e-87 | 266 |
| MS.gene064797.t1 | AT1G64970 | 23.607 | 305 | 204 | 7 | 66 | 354 | 56 | 347 | 1.47e-14 | 74.3 |
| MS.gene064797.t1 | AT1G73600 | 31.776 | 107 | 71 | 1 | 116 | 222 | 274 | 378 | 8.05e-11 | 63.5 |
| MS.gene064797.t1 | AT1G73600 | 31.776 | 107 | 71 | 1 | 116 | 222 | 288 | 392 | 9.75e-11 | 63.5 |
Find 96 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCGGTTTCGATCTCTTT+TGG | 0.211288 | 3.4:+98258467 | None:intergenic |
| CGCGCCGTCGAAGCTGTTAT+TGG | 0.221898 | 3.4:+98258085 | None:intergenic |
| CTCTTTATGTTTCATATGAA+TGG | 0.263212 | 3.4:-98257983 | MS.gene064797:CDS |
| AAATGGGTCGGATTGCTTAT+TGG | 0.263397 | 3.4:-98257767 | MS.gene064797:CDS |
| GAAAGAGGTGATGCGCTTCC+TGG | 0.264267 | 3.4:-98257900 | MS.gene064797:CDS |
| ATGGTGGACCCGTTTGAAAA+TGG | 0.310972 | 3.4:-98257784 | MS.gene064797:CDS |
| TAAAATGTATCGACGAAATC+TGG | 0.322018 | 3.4:+98258437 | None:intergenic |
| CGATATTTACGAATGGGGTT+GGG | 0.323081 | 3.4:-98258402 | MS.gene064797:CDS |
| TGAACATCAACGGTTCCTTT+AGG | 0.334532 | 3.4:+98257699 | None:intergenic |
| GGCATCACGGTCAGATTTAC+CGG | 0.342355 | 3.4:+98258349 | None:intergenic |
| TAAGTTGAATTATCTTCTTT+TGG | 0.351483 | 3.4:+98257588 | None:intergenic |
| CATTCACGCGCTAACGTTGT+TGG | 0.362166 | 3.4:-98258218 | MS.gene064797:CDS |
| TACTGGTTCGTTTGCGTCCT+CGG | 0.367782 | 3.4:-98258596 | MS.gene064797:CDS |
| GTAACGGTTCTGTCTGCTTT+GGG | 0.376596 | 3.4:-98257729 | MS.gene064797:CDS |
| GATCTACGGCCATTTCTTCA+TGG | 0.377423 | 3.4:+98258318 | None:intergenic |
| GGTTGGGTTTGAGGTTGTTA+AGG | 0.385526 | 3.4:-98257838 | MS.gene064797:CDS |
| TCCTCGCCGGCGGTCTCTAC+TGG | 0.391323 | 3.4:-98258613 | MS.gene064797:CDS |
| GGTTGTTAAGGAACGGGATC+TGG | 0.398392 | 3.4:-98257826 | MS.gene064797:CDS |
| GGTAACGGTTCTGTCTGCTT+TGG | 0.405488 | 3.4:-98257730 | MS.gene064797:CDS |
| CACCCGCCTCCATGAAGAAA+TGG | 0.407729 | 3.4:-98258327 | MS.gene064797:CDS |
| GGCTAAGAAGGTTGGGTTTG+AGG | 0.408359 | 3.4:-98257847 | MS.gene064797:CDS |
| ACAGAACCGTTACCACAATA+TGG | 0.417640 | 3.4:+98257739 | None:intergenic |
| CCAACCCCATTCGTAAATAT+CGG | 0.433176 | 3.4:+98258403 | None:intergenic |
| GATCTAATCGAGGTTAAATC+TGG | 0.437762 | 3.4:-98258299 | MS.gene064797:CDS |
| CGTTACCGATATTTACGAAT+GGG | 0.442701 | 3.4:-98258408 | MS.gene064797:CDS |
| CCGATATTTACGAATGGGGT+TGG | 0.443208 | 3.4:-98258403 | MS.gene064797:CDS |
| TCTTTATGTTTCATATGAAT+GGG | 0.443318 | 3.4:-98257982 | MS.gene064797:CDS |
| GTTTGAGGTTGTTAAGGAAC+GGG | 0.444084 | 3.4:-98257832 | MS.gene064797:CDS |
| TGGTGGACCCGTTTGAAAAT+GGG | 0.448669 | 3.4:-98257783 | MS.gene064797:CDS |
| GAACATGTTGAGATTATTCA+AGG | 0.452409 | 3.4:-98257927 | MS.gene064797:CDS |
| GATATTTACGAATGGGGTTG+GGG | 0.457811 | 3.4:-98258401 | MS.gene064797:CDS |
| GCGCCGTCGAAGCTGTTATT+GGG | 0.458017 | 3.4:+98258086 | None:intergenic |
| CTCCGGTGCAGAAGAGAGAA+AGG | 0.458720 | 3.4:+98258639 | None:intergenic |
| CTGAAGCGGCTAAGAAGGTT+GGG | 0.459708 | 3.4:-98257854 | MS.gene064797:CDS |
| GCGTAAACTTCTTCAAGATT+AGG | 0.459835 | 3.4:+98258035 | None:intergenic |
| AGTATTTATCGTAACTGTCT+TGG | 0.460133 | 3.4:+98258507 | None:intergenic |
| CGGCCATTTCTTCATGGAGG+CGG | 0.460343 | 3.4:+98258324 | None:intergenic |
| GGCCATTTCTTCATGGAGGC+GGG | 0.483293 | 3.4:+98258325 | None:intergenic |
| ACCGCCGGCGAGGAGGGCTC+CGG | 0.486822 | 3.4:+98258622 | None:intergenic |
| CTCGATGTAGGTTGCGGTGT+TGG | 0.487116 | 3.4:-98258266 | MS.gene064797:CDS |
| CTCAGCCACCGTCTCATCCA+TGG | 0.489785 | 3.4:-98257803 | MS.gene064797:CDS |
| AAACGCGCCACCGATCTATC+CGG | 0.493820 | 3.4:-98258554 | MS.gene064797:CDS |
| ATTATTCAAGGTATTGAAAG+AGG | 0.496602 | 3.4:-98257915 | MS.gene064797:CDS |
| ACCCTTTCTCTCTTCTGCAC+CGG | 0.497665 | 3.4:-98258641 | MS.gene064797:CDS |
| AAAGAGGTGATGCGCTTCCT+GGG | 0.500216 | 3.4:-98257899 | MS.gene064797:CDS |
| TCTCTATGCGATGTTGTTTG+TGG | 0.500320 | 3.4:-98258131 | MS.gene064797:CDS |
| CTCGGCCCTGCCGAACGAAA+AGG | 0.505038 | 3.4:-98258578 | MS.gene064797:CDS |
| GCTGAAGCGGCTAAGAAGGT+TGG | 0.506568 | 3.4:-98257855 | MS.gene064797:CDS |
| ATGAGACGCGATAGCTCTCA+TGG | 0.507512 | 3.4:+98258238 | None:intergenic |
| GATGTAGGTTGCGGTGTTGG+TGG | 0.513870 | 3.4:-98258263 | MS.gene064797:CDS |
| TATAGCTGAAGCGGCTAAGA+AGG | 0.514512 | 3.4:-98257859 | MS.gene064797:CDS |
| GGTGATAAAATTCTCGATGT+AGG | 0.518771 | 3.4:-98258278 | MS.gene064797:CDS |
| TTTAACCTCGATTAGATCTA+CGG | 0.521898 | 3.4:+98258304 | None:intergenic |
| AAGACAGTTACGATAAATAC+TGG | 0.522518 | 3.4:-98258505 | MS.gene064797:CDS |
| CATGGAGGCGGGTGGCATCA+CGG | 0.523913 | 3.4:+98258336 | None:intergenic |
| TTCAGCGGAAATTGAACCGC+CGG | 0.527269 | 3.4:+98258535 | None:intergenic |
| GCTTTGGGAATTGCACCTAA+AGG | 0.533645 | 3.4:-98257714 | MS.gene064797:CDS |
| ATGTAGGTTGCGGTGTTGGT+GGG | 0.535396 | 3.4:-98258262 | MS.gene064797:CDS |
| TCGAAGCTGTTATTGGGAAA+CGG | 0.537800 | 3.4:+98258092 | None:intergenic |
| GGTTTGAGGTTGTTAAGGAA+CGG | 0.540682 | 3.4:-98257833 | MS.gene064797:CDS |
| TCAGCGTAGGTTCTAAGCCC+AGG | 0.541956 | 3.4:+98257882 | None:intergenic |
| TCAGATTTACCGGGAATAGC+GGG | 0.543231 | 3.4:+98258359 | None:intergenic |
| GTAGAGACCGCCGGCGAGGA+GGG | 0.547296 | 3.4:+98258616 | None:intergenic |
| CTGCAGAGAATCATGTGCAT+AGG | 0.550727 | 3.4:+98257615 | None:intergenic |
| CTACGCTGATATAGCTGAAG+CGG | 0.552632 | 3.4:-98257868 | MS.gene064797:CDS |
| AATTGAACCGCCGGATAGAT+CGG | 0.553673 | 3.4:+98258544 | None:intergenic |
| ACCGGAGCCCTCCTCGCCGG+CGG | 0.554746 | 3.4:-98258623 | MS.gene064797:CDS |
| GTCAGATTTACCGGGAATAG+CGG | 0.555781 | 3.4:+98258358 | None:intergenic |
| GCGTAACCATATTGTGGTAA+CGG | 0.558003 | 3.4:-98257745 | MS.gene064797:CDS |
| TGCACCGGAGCCCTCCTCGC+CGG | 0.559092 | 3.4:-98258626 | MS.gene064797:CDS |
| AAAATTCTCGATGTAGGTTG+CGG | 0.567893 | 3.4:-98258272 | MS.gene064797:CDS |
| AAGATTAGGCGCGTGGCACG+TGG | 0.572185 | 3.4:+98258049 | None:intergenic |
| CATTTCTTCATGGAGGCGGG+TGG | 0.572835 | 3.4:+98258328 | None:intergenic |
| TCGTTACCGATATTTACGAA+TGG | 0.576012 | 3.4:-98258409 | MS.gene064797:CDS |
| CGGGTCCACCATGGATGAGA+CGG | 0.590737 | 3.4:+98257795 | None:intergenic |
| TTTCCCAATAACAGCTTCGA+CGG | 0.594298 | 3.4:-98258089 | MS.gene064797:CDS |
| TATGAAACATAAAGAGCACC+AGG | 0.594738 | 3.4:+98257990 | None:intergenic |
| TTATTGGCGTAACCATATTG+TGG | 0.596355 | 3.4:-98257751 | MS.gene064797:CDS |
| CGCTTCAGCTATATCAGCGT+AGG | 0.600324 | 3.4:+98257869 | None:intergenic |
| GTTACCGATATTTACGAATG+GGG | 0.610865 | 3.4:-98258407 | MS.gene064797:CDS |
| AACGAACCAGTAGAGACCGC+CGG | 0.612867 | 3.4:+98258607 | None:intergenic |
| AGTAGAGACCGCCGGCGAGG+AGG | 0.613500 | 3.4:+98258615 | None:intergenic |
| CTTCTTCAAGATTAGGCGCG+TGG | 0.615214 | 3.4:+98258042 | None:intergenic |
| TCCGGTGCAGAAGAGAGAAA+GGG | 0.624782 | 3.4:+98258640 | None:intergenic |
| GGACCCGTTTGAAAATGGGT+CGG | 0.636433 | 3.4:-98257779 | MS.gene064797:CDS |
| ACCAGTAGAGACCGCCGGCG+AGG | 0.640194 | 3.4:+98258612 | None:intergenic |
| CAGCATCTCATGAACATCAA+CGG | 0.644005 | 3.4:+98257689 | None:intergenic |
| GCATCACGGTCAGATTTACC+GGG | 0.648477 | 3.4:+98258350 | None:intergenic |
| CGCGCCACCGATCTATCCGG+CGG | 0.666165 | 3.4:-98258551 | MS.gene064797:CDS |
| AGCCACCGTCTCATCCATGG+TGG | 0.669559 | 3.4:-98257800 | MS.gene064797:CDS |
| TGAGACGCGATAGCTCTCAT+GGG | 0.676213 | 3.4:+98258239 | None:intergenic |
| GTCCACCATGGATGAGACGG+TGG | 0.682031 | 3.4:+98257798 | None:intergenic |
| CTACGGCCATTTCTTCATGG+AGG | 0.696293 | 3.4:+98258321 | None:intergenic |
| TGAACCGCCGGATAGATCGG+TGG | 0.706847 | 3.4:+98258547 | None:intergenic |
| GAAATCTGGAACTTTCTCAG+CGG | 0.713889 | 3.4:+98258451 | None:intergenic |
| AATGGCCGTAGATCTAATCG+AGG | 0.723393 | 3.4:-98258309 | MS.gene064797:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTTATGTTTCATATGAAT+GGG | - | chr3.4:98258252-98258271 | MS.gene064797:CDS | 20.0% |
| !!! | TAAGTTGAATTATCTTCTTT+TGG | + | chr3.4:98258649-98258668 | None:intergenic | 20.0% |
| ! | AAATTACACAACAAAAAAGC+TGG | - | chr3.4:98258073-98258092 | MS.gene064797:CDS | 25.0% |
| ! | CTCTTTATGTTTCATATGAA+TGG | - | chr3.4:98258251-98258270 | MS.gene064797:CDS | 25.0% |
| !! | AAGTTTACGCTGAAATTTTT+AGG | - | chr3.4:98258212-98258231 | MS.gene064797:CDS | 25.0% |
| !! | AGTTTACGCTGAAATTTTTA+GGG | - | chr3.4:98258213-98258232 | MS.gene064797:CDS | 25.0% |
| !!! | ATTATTCAAGGTATTGAAAG+AGG | - | chr3.4:98258319-98258338 | MS.gene064797:CDS | 25.0% |
| AAGACAGTTACGATAAATAC+TGG | - | chr3.4:98257729-98257748 | MS.gene064797:CDS | 30.0% | |
| AGTATTTATCGTAACTGTCT+TGG | + | chr3.4:98257730-98257749 | None:intergenic | 30.0% | |
| GAACATGTTGAGATTATTCA+AGG | - | chr3.4:98258307-98258326 | MS.gene064797:CDS | 30.0% | |
| TTTAACCTCGATTAGATCTA+CGG | + | chr3.4:98257933-98257952 | None:intergenic | 30.0% | |
| ! | TAAAATGTATCGACGAAATC+TGG | + | chr3.4:98257800-98257819 | None:intergenic | 30.0% |
| !!! | ATTTTTAGGGTTTTGAAACC+TGG | - | chr3.4:98258226-98258245 | MS.gene064797:CDS | 30.0% |
| AAAATTCTCGATGTAGGTTG+CGG | - | chr3.4:98257962-98257981 | MS.gene064797:CDS | 35.0% | |
| CGTTACCGATATTTACGAAT+GGG | - | chr3.4:98257826-98257845 | MS.gene064797:CDS | 35.0% | |
| GATCTAATCGAGGTTAAATC+TGG | - | chr3.4:98257935-98257954 | MS.gene064797:CDS | 35.0% | |
| GCGTAAACTTCTTCAAGATT+AGG | + | chr3.4:98258202-98258221 | None:intergenic | 35.0% | |
| GGTGATAAAATTCTCGATGT+AGG | - | chr3.4:98257956-98257975 | MS.gene064797:CDS | 35.0% | |
| GTTACCGATATTTACGAATG+GGG | - | chr3.4:98257827-98257846 | MS.gene064797:CDS | 35.0% | |
| TCGTTACCGATATTTACGAA+TGG | - | chr3.4:98257825-98257844 | MS.gene064797:CDS | 35.0% | |
| TTATTGGCGTAACCATATTG+TGG | - | chr3.4:98258483-98258502 | MS.gene064797:CDS | 35.0% | |
| !! | TATGAAACATAAAGAGCACC+AGG | + | chr3.4:98258247-98258266 | None:intergenic | 35.0% |
| AAATGGGTCGGATTGCTTAT+TGG | - | chr3.4:98258467-98258486 | MS.gene064797:CDS | 40.0% | |
| ACAGAACCGTTACCACAATA+TGG | + | chr3.4:98258498-98258517 | None:intergenic | 40.0% | |
| CAGCATCTCATGAACATCAA+CGG | + | chr3.4:98258548-98258567 | None:intergenic | 40.0% | |
| CCAACCCCATTCGTAAATAT+CGG | + | chr3.4:98257834-98257853 | None:intergenic | 40.0% | |
| CGATATTTACGAATGGGGTT+GGG | - | chr3.4:98257832-98257851 | MS.gene064797:CDS | 40.0% | |
| GATATTTACGAATGGGGTTG+GGG | - | chr3.4:98257833-98257852 | MS.gene064797:CDS | 40.0% | |
| GCGTAACCATATTGTGGTAA+CGG | - | chr3.4:98258489-98258508 | MS.gene064797:CDS | 40.0% | |
| TCGAAGCTGTTATTGGGAAA+CGG | + | chr3.4:98258145-98258164 | None:intergenic | 40.0% | |
| TGAACATCAACGGTTCCTTT+AGG | + | chr3.4:98258538-98258557 | None:intergenic | 40.0% | |
| TTTCCCAATAACAGCTTCGA+CGG | - | chr3.4:98258145-98258164 | MS.gene064797:CDS | 40.0% | |
| ! | AATCCGACCCATTTTCAAAC+GGG | + | chr3.4:98258461-98258480 | None:intergenic | 40.0% |
| ! | CAATCCGACCCATTTTCAAA+CGG | + | chr3.4:98258462-98258481 | None:intergenic | 40.0% |
| ! | GAAATCTGGAACTTTCTCAG+CGG | + | chr3.4:98257786-98257805 | None:intergenic | 40.0% |
| ! | GGTTTGAGGTTGTTAAGGAA+CGG | - | chr3.4:98258401-98258420 | MS.gene064797:CDS | 40.0% |
| ! | GTTTGAGGTTGTTAAGGAAC+GGG | - | chr3.4:98258402-98258421 | MS.gene064797:CDS | 40.0% |
| ! | TCTCTATGCGATGTTGTTTG+TGG | - | chr3.4:98258103-98258122 | MS.gene064797:CDS | 40.0% |
| !! | AATAGCGGGTGAAAAATGGA+AGG | + | chr3.4:98257864-98257883 | None:intergenic | 40.0% |
| !!! | ACTGCTGACTTTTTGACAAG+AGG | - | chr3.4:98258574-98258593 | MS.gene064797:CDS | 40.0% |
| !!! | ACTGTCTTGGACTTTTTCAG+CGG | + | chr3.4:98257717-98257736 | None:intergenic | 40.0% |
| !!! | CTGCTGACTTTTTGACAAGA+GGG | - | chr3.4:98258575-98258594 | MS.gene064797:CDS | 40.0% |
| !!! | TGCTGACTTTTTGACAAGAG+GGG | - | chr3.4:98258576-98258595 | MS.gene064797:CDS | 40.0% |
| AATGGCCGTAGATCTAATCG+AGG | - | chr3.4:98257925-98257944 | MS.gene064797:CDS | 45.0% | |
| AATTGAACCGCCGGATAGAT+CGG | + | chr3.4:98257693-98257712 | None:intergenic | 45.0% | |
| CCGATATTTACGAATGGGGT+TGG | - | chr3.4:98257831-98257850 | MS.gene064797:CDS | 45.0% | |
| CTACGCTGATATAGCTGAAG+CGG | - | chr3.4:98258366-98258385 | MS.gene064797:CDS | 45.0% | |
| CTGCAGAGAATCATGTGCAT+AGG | + | chr3.4:98258622-98258641 | None:intergenic | 45.0% | |
| GATCTACGGCCATTTCTTCA+TGG | + | chr3.4:98257919-98257938 | None:intergenic | 45.0% | |
| GTAACGGTTCTGTCTGCTTT+GGG | - | chr3.4:98258505-98258524 | MS.gene064797:CDS | 45.0% | |
| GTCAGATTTACCGGGAATAG+CGG | + | chr3.4:98257879-98257898 | None:intergenic | 45.0% | |
| TATAGCTGAAGCGGCTAAGA+AGG | - | chr3.4:98258375-98258394 | MS.gene064797:CDS | 45.0% | |
| TCAGATTTACCGGGAATAGC+GGG | + | chr3.4:98257878-98257897 | None:intergenic | 45.0% | |
| ! | ATTTTCAAACGGGTCCACCA+TGG | + | chr3.4:98258451-98258470 | None:intergenic | 45.0% |
| ! | CAGCGGTTTCGATCTCTTTT+GGG | + | chr3.4:98257769-98257788 | None:intergenic | 45.0% |
| ! | CATTTTTCACCCGCTATTCC+CGG | - | chr3.4:98257866-98257885 | MS.gene064797:CDS | 45.0% |
| ! | GGTTGGGTTTGAGGTTGTTA+AGG | - | chr3.4:98258396-98258415 | MS.gene064797:CDS | 45.0% |
| ! | TCAGCGGTTTCGATCTCTTT+TGG | + | chr3.4:98257770-98257789 | None:intergenic | 45.0% |
| ! | TGGTGGACCCGTTTGAAAAT+GGG | - | chr3.4:98258451-98258470 | MS.gene064797:CDS | 45.0% |
| !! | ATGGTGGACCCGTTTGAAAA+TGG | - | chr3.4:98258450-98258469 | MS.gene064797:CDS | 45.0% |
| !! | GCTGACTTTTTGACAAGAGG+GGG | - | chr3.4:98258577-98258596 | MS.gene064797:CDS | 45.0% |
| !! | GCTTTGGGAATTGCACCTAA+AGG | - | chr3.4:98258520-98258539 | MS.gene064797:CDS | 45.0% |
| AAAGAGGTGATGCGCTTCCT+GGG | - | chr3.4:98258335-98258354 | MS.gene064797:CDS | 50.0% | |
| ACCCTTTCTCTCTTCTGCAC+CGG | - | chr3.4:98257593-98257612 | MS.gene064797:CDS | 50.0% | |
| ATGAGACGCGATAGCTCTCA+TGG | + | chr3.4:98257999-98258018 | None:intergenic | 50.0% | |
| CATTCACGCGCTAACGTTGT+TGG | - | chr3.4:98258016-98258035 | MS.gene064797:CDS | 50.0% | |
| CGCTTCAGCTATATCAGCGT+AGG | + | chr3.4:98258368-98258387 | None:intergenic | 50.0% | |
| CTACGGCCATTTCTTCATGG+AGG | + | chr3.4:98257916-98257935 | None:intergenic | 50.0% | |
| CTGAAGCGGCTAAGAAGGTT+GGG | - | chr3.4:98258380-98258399 | MS.gene064797:CDS | 50.0% | |
| CTTCTTCAAGATTAGGCGCG+TGG | + | chr3.4:98258195-98258214 | None:intergenic | 50.0% | |
| GCATCACGGTCAGATTTACC+GGG | + | chr3.4:98257887-98257906 | None:intergenic | 50.0% | |
| GGACCCGTTTGAAAATGGGT+CGG | - | chr3.4:98258455-98258474 | MS.gene064797:CDS | 50.0% | |
| GGCATCACGGTCAGATTTAC+CGG | + | chr3.4:98257888-98257907 | None:intergenic | 50.0% | |
| GGCTAAGAAGGTTGGGTTTG+AGG | - | chr3.4:98258387-98258406 | MS.gene064797:CDS | 50.0% | |
| GGTTGTTAAGGAACGGGATC+TGG | - | chr3.4:98258408-98258427 | MS.gene064797:CDS | 50.0% | |
| TCCGGTGCAGAAGAGAGAAA+GGG | + | chr3.4:98257597-98257616 | None:intergenic | 50.0% | |
| TGAGACGCGATAGCTCTCAT+GGG | + | chr3.4:98257998-98258017 | None:intergenic | 50.0% | |
| TTCAGCGGAAATTGAACCGC+CGG | + | chr3.4:98257702-98257721 | None:intergenic | 50.0% | |
| TTGACAAGAGGGGGTGATAC+TGG | - | chr3.4:98258586-98258605 | MS.gene064797:CDS | 50.0% | |
| ! | CGGTTTCGATCTCTTTTGGG+CGG | + | chr3.4:98257766-98257785 | None:intergenic | 50.0% |
| ! | GGTAACGGTTCTGTCTGCTT+TGG | - | chr3.4:98258504-98258523 | MS.gene064797:CDS | 50.0% |
| ! | GTTTGCCTTTTCGTTCGGCA+GGG | + | chr3.4:98257664-98257683 | None:intergenic | 50.0% |
| ! | TTTCGATCTCTTTTGGGCGG+CGG | + | chr3.4:98257763-98257782 | None:intergenic | 50.0% |
| !! | ATGTAGGTTGCGGTGTTGGT+GGG | - | chr3.4:98257972-98257991 | MS.gene064797:CDS | 50.0% |
| !! | CGGGAATAGCGGGTGAAAAA+TGG | + | chr3.4:98257868-98257887 | None:intergenic | 50.0% |
| !! | TACTGGTTCGTTTGCGTCCT+CGG | - | chr3.4:98257638-98257657 | MS.gene064797:CDS | 50.0% |
| AAACGCGCCACCGATCTATC+CGG | - | chr3.4:98257680-98257699 | MS.gene064797:CDS | 55.0% | |
| AACGAACCAGTAGAGACCGC+CGG | + | chr3.4:98257630-98257649 | None:intergenic | 55.0% | |
| CACCCGCCTCCATGAAGAAA+TGG | - | chr3.4:98257907-98257926 | MS.gene064797:CDS | 55.0% | |
| CATTTCTTCATGGAGGCGGG+TGG | + | chr3.4:98257909-98257928 | None:intergenic | 55.0% | |
| CGGCCATTTCTTCATGGAGG+CGG | + | chr3.4:98257913-98257932 | None:intergenic | 55.0% | |
| CTCCGGTGCAGAAGAGAGAA+AGG | + | chr3.4:98257598-98257617 | None:intergenic | 55.0% | |
| CTCGATGTAGGTTGCGGTGT+TGG | - | chr3.4:98257968-98257987 | MS.gene064797:CDS | 55.0% | |
| GAAAGAGGTGATGCGCTTCC+TGG | - | chr3.4:98258334-98258353 | MS.gene064797:CDS | 55.0% | |
| GCGCCGTCGAAGCTGTTATT+GGG | + | chr3.4:98258151-98258170 | None:intergenic | 55.0% | |
| GCTGAAGCGGCTAAGAAGGT+TGG | - | chr3.4:98258379-98258398 | MS.gene064797:CDS | 55.0% | |
| GGCCATTTCTTCATGGAGGC+GGG | + | chr3.4:98257912-98257931 | None:intergenic | 55.0% | |
| ! | CGTTTGCCTTTTCGTTCGGC+AGG | + | chr3.4:98257665-98257684 | None:intergenic | 55.0% |
| ! | GATGTAGGTTGCGGTGTTGG+TGG | - | chr3.4:98257971-98257990 | MS.gene064797:CDS | 55.0% |
| ! | GGCGCGTTTGCCTTTTCGTT+CGG | + | chr3.4:98257669-98257688 | None:intergenic | 55.0% |
| !! | TCAGCGTAGGTTCTAAGCCC+AGG | + | chr3.4:98258355-98258374 | None:intergenic | 55.0% |
| AAGATTAGGCGCGTGGCACG+TGG | + | chr3.4:98258188-98258207 | None:intergenic | 60.0% | |
| AGCCACCGTCTCATCCATGG+TGG | - | chr3.4:98258434-98258453 | MS.gene064797:CDS | 60.0% | |
| CGCGCCGTCGAAGCTGTTAT+TGG | + | chr3.4:98258152-98258171 | None:intergenic | 60.0% | |
| CGGGTCCACCATGGATGAGA+CGG | + | chr3.4:98258442-98258461 | None:intergenic | 60.0% | |
| CTCAGCCACCGTCTCATCCA+TGG | - | chr3.4:98258431-98258450 | MS.gene064797:CDS | 60.0% | |
| GTCCACCATGGATGAGACGG+TGG | + | chr3.4:98258439-98258458 | None:intergenic | 60.0% | |
| TGAACCGCCGGATAGATCGG+TGG | + | chr3.4:98257690-98257709 | None:intergenic | 60.0% | |
| CATGGAGGCGGGTGGCATCA+CGG | + | chr3.4:98257901-98257920 | None:intergenic | 65.0% | |
| CTCGGCCCTGCCGAACGAAA+AGG | - | chr3.4:98257656-98257675 | MS.gene064797:CDS | 65.0% | |
| ! | CTTTTCGTTCGGCAGGGCCG+AGG | + | chr3.4:98257658-98257677 | None:intergenic | 65.0% |
| ACCAGTAGAGACCGCCGGCG+AGG | + | chr3.4:98257625-98257644 | None:intergenic | 70.0% | |
| AGTAGAGACCGCCGGCGAGG+AGG | + | chr3.4:98257622-98257641 | None:intergenic | 70.0% | |
| CGCGCCACCGATCTATCCGG+CGG | - | chr3.4:98257683-98257702 | MS.gene064797:CDS | 70.0% | |
| GTAGAGACCGCCGGCGAGGA+GGG | + | chr3.4:98257621-98257640 | None:intergenic | 70.0% | |
| TCCTCGCCGGCGGTCTCTAC+TGG | - | chr3.4:98257621-98257640 | MS.gene064797:CDS | 70.0% | |
| TGCACCGGAGCCCTCCTCGC+CGG | - | chr3.4:98257608-98257627 | MS.gene064797:CDS | 75.0% | |
| ! | ACCGCCGGCGAGGAGGGCTC+CGG | + | chr3.4:98257615-98257634 | None:intergenic | 80.0% |
| ! | ACCGGAGCCCTCCTCGCCGG+CGG | - | chr3.4:98257611-98257630 | MS.gene064797:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 98257587 | 98258669 | 98257587 | ID=MS.gene064797 |
| chr3.4 | mRNA | 98257587 | 98258669 | 98257587 | ID=MS.gene064797.t1;Parent=MS.gene064797 |
| chr3.4 | exon | 98257587 | 98258669 | 98257587 | ID=MS.gene064797.t1.exon1;Parent=MS.gene064797.t1 |
| chr3.4 | CDS | 98257587 | 98258669 | 98257587 | ID=cds.MS.gene064797.t1;Parent=MS.gene064797.t1 |
| Gene Sequence |
| Protein sequence |
