Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69360.t1 | XP_003603838.1 | 99.4 | 359 | 2 | 0 | 1 | 359 | 1 | 359 | 7.50E-212 | 746.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69360.t1 | Q39227 | 86.8 | 355 | 47 | 0 | 1 | 355 | 1 | 355 | 4.1e-190 | 665.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69360.t1 | G7J5X1 | 99.4 | 359 | 2 | 0 | 1 | 359 | 1 | 359 | 5.4e-212 | 746.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene69360 | -0.815922 | 7.21E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene69360 | -0.822346 | 2.49E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene69360 | -0.815513 | 8.90E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene69360 | -0.803116 | 4.06E-49 | -1.69E-46 |
| MS.gene050330 | MS.gene69360 | 0.836776 | 7.68E-57 | -1.69E-46 |
| MS.gene050642 | MS.gene69360 | -0.800304 | 1.53E-48 | -1.69E-46 |
| MS.gene050953 | MS.gene69360 | -0.811497 | 6.80E-51 | -1.69E-46 |
| MS.gene051452 | MS.gene69360 | -0.809369 | 1.96E-50 | -1.69E-46 |
| MS.gene051983 | MS.gene69360 | -0.811247 | 7.70E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene69360 | -0.837492 | 5.03E-57 | -1.69E-46 |
| MS.gene052309 | MS.gene69360 | 0.845865 | 3.11E-59 | -1.69E-46 |
| MS.gene052358 | MS.gene69360 | 0.821631 | 3.64E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene69360 | -0.804684 | 1.92E-49 | -1.69E-46 |
| MS.gene054405 | MS.gene69360 | -0.804356 | 2.25E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene69360 | -0.805287 | 1.44E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene69360 | -0.805745 | 1.15E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene69360 | -0.821041 | 4.98E-53 | -1.69E-46 |
| MS.gene055818 | MS.gene69360 | -0.813286 | 2.76E-51 | -1.69E-46 |
| MS.gene05795 | MS.gene69360 | -0.806833 | 6.79E-50 | -1.69E-46 |
| MS.gene058139 | MS.gene69360 | -0.823308 | 1.49E-53 | -1.69E-46 |
| MS.gene058498 | MS.gene69360 | -0.826162 | 3.16E-54 | -1.69E-46 |
| MS.gene058500 | MS.gene69360 | -0.811094 | 8.31E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene69360 | -0.830651 | 2.60E-55 | -1.69E-46 |
| MS.gene060683 | MS.gene69360 | -0.805662 | 1.20E-49 | -1.69E-46 |
| MS.gene060685 | MS.gene69360 | -0.808663 | 2.77E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene69360 | 0.822619 | 2.15E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69360 | MS.gene91862 | PPI |
| MS.gene92683 | MS.gene69360 | PPI |
| MS.gene69360 | MS.gene46629 | PPI |
| MS.gene69360 | MS.gene77896 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69360.t1 | MTR_3g114780 | 99.167 | 360 | 3 | 0 | 1 | 360 | 1 | 360 | 0.0 | 744 |
| MS.gene69360.t1 | MTR_3g032530 | 41.369 | 336 | 179 | 4 | 39 | 359 | 8 | 340 | 1.57e-87 | 268 |
| MS.gene69360.t1 | MTR_3g032530 | 43.144 | 299 | 154 | 3 | 74 | 359 | 2 | 297 | 2.24e-84 | 258 |
| MS.gene69360.t1 | MTR_1g014690 | 27.155 | 232 | 145 | 5 | 77 | 290 | 72 | 297 | 4.49e-15 | 75.9 |
| MS.gene69360.t1 | MTR_1g014690 | 28.743 | 167 | 115 | 2 | 127 | 290 | 77 | 242 | 3.56e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69360.t1 | AT1G20330 | 86.761 | 355 | 47 | 0 | 1 | 355 | 1 | 355 | 0.0 | 665 |
| MS.gene69360.t1 | AT1G76090 | 81.742 | 356 | 65 | 0 | 1 | 356 | 1 | 356 | 0.0 | 643 |
| MS.gene69360.t1 | AT5G13710 | 40.729 | 329 | 183 | 2 | 39 | 355 | 8 | 336 | 5.81e-87 | 266 |
| MS.gene69360.t1 | AT5G13710 | 40.729 | 329 | 183 | 2 | 39 | 355 | 8 | 336 | 5.81e-87 | 266 |
| MS.gene69360.t1 | AT1G64970 | 23.607 | 305 | 204 | 7 | 66 | 354 | 56 | 347 | 1.47e-14 | 74.3 |
| MS.gene69360.t1 | AT1G73600 | 31.776 | 107 | 71 | 1 | 116 | 222 | 274 | 378 | 8.05e-11 | 63.5 |
| MS.gene69360.t1 | AT1G73600 | 31.776 | 107 | 71 | 1 | 116 | 222 | 288 | 392 | 9.75e-11 | 63.5 |
Find 96 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCGGTTTCGATCTCTTT+TGG | 0.211288 | 3.3:+93656894 | None:intergenic |
| CGCGCCGTCGAAGCTGTTAT+TGG | 0.221898 | 3.3:+93656512 | None:intergenic |
| AAATGGGTCGGATTGCTTAT+TGG | 0.263397 | 3.3:-93656194 | MS.gene69360:CDS |
| GAAAGAGGTGATGCGCTTCC+TGG | 0.264267 | 3.3:-93656327 | MS.gene69360:CDS |
| CTCTTTACGTTTCATATGAA+TGG | 0.284632 | 3.3:-93656410 | MS.gene69360:CDS |
| ATGGTGGACCCGTTTGAAAA+TGG | 0.310972 | 3.3:-93656211 | MS.gene69360:CDS |
| TAAAATGTATCGACGAAATC+TGG | 0.322018 | 3.3:+93656864 | None:intergenic |
| CGATATTTACGAATGGGGTT+GGG | 0.323081 | 3.3:-93656829 | MS.gene69360:CDS |
| TGAACATCAACGGTTCCTTT+AGG | 0.334532 | 3.3:+93656126 | None:intergenic |
| GGCATCACGGTCAGATTTAC+CGG | 0.342355 | 3.3:+93656776 | None:intergenic |
| TAAGTTGAATTATCTTCTTT+TGG | 0.351483 | 3.3:+93656015 | None:intergenic |
| CATTCACGCGCTAACGTTGT+TGG | 0.362166 | 3.3:-93656645 | MS.gene69360:CDS |
| TACTGGTTCGTTTGCGTCCT+CGG | 0.367782 | 3.3:-93657023 | MS.gene69360:CDS |
| GTAACGGTTCTGTCTGCTTT+GGG | 0.376596 | 3.3:-93656156 | MS.gene69360:CDS |
| GATCTACGGCCATTTCTTCA+TGG | 0.377423 | 3.3:+93656745 | None:intergenic |
| GGTTGGGTTTGAGGTTGTTA+AGG | 0.385526 | 3.3:-93656265 | MS.gene69360:CDS |
| TCCTCGCCGGCGGTCTCTAC+TGG | 0.391323 | 3.3:-93657040 | MS.gene69360:CDS |
| GGTTGTTAAGGAACGGGATC+TGG | 0.398392 | 3.3:-93656253 | MS.gene69360:CDS |
| GGTAACGGTTCTGTCTGCTT+TGG | 0.405488 | 3.3:-93656157 | MS.gene69360:CDS |
| CACCCGCCTCCATGAAGAAA+TGG | 0.407729 | 3.3:-93656754 | MS.gene69360:CDS |
| GGCTAAGAAGGTTGGGTTTG+AGG | 0.408359 | 3.3:-93656274 | MS.gene69360:CDS |
| ACAGAACCGTTACCACAATA+TGG | 0.417640 | 3.3:+93656166 | None:intergenic |
| CCAACCCCATTCGTAAATAT+CGG | 0.433176 | 3.3:+93656830 | None:intergenic |
| GATCTAATCGAGGTTAAATC+TGG | 0.437762 | 3.3:-93656726 | MS.gene69360:CDS |
| CGTTACCGATATTTACGAAT+GGG | 0.442701 | 3.3:-93656835 | MS.gene69360:CDS |
| CCGATATTTACGAATGGGGT+TGG | 0.443208 | 3.3:-93656830 | MS.gene69360:CDS |
| TCTTTACGTTTCATATGAAT+GGG | 0.443318 | 3.3:-93656409 | MS.gene69360:CDS |
| GTTTGAGGTTGTTAAGGAAC+GGG | 0.444084 | 3.3:-93656259 | MS.gene69360:CDS |
| TGGTGGACCCGTTTGAAAAT+GGG | 0.448669 | 3.3:-93656210 | MS.gene69360:CDS |
| GAACATGTTGAGATTATTCA+AGG | 0.452409 | 3.3:-93656354 | MS.gene69360:CDS |
| GATATTTACGAATGGGGTTG+GGG | 0.457811 | 3.3:-93656828 | MS.gene69360:CDS |
| GCGCCGTCGAAGCTGTTATT+GGG | 0.458017 | 3.3:+93656513 | None:intergenic |
| CTCCGGTGCAGAAGAGAGAA+AGG | 0.458720 | 3.3:+93657066 | None:intergenic |
| CTGAAGCGGCTAAGAAGGTT+GGG | 0.459708 | 3.3:-93656281 | MS.gene69360:CDS |
| GCGTAAACTTCTTCAAGATT+AGG | 0.459835 | 3.3:+93656462 | None:intergenic |
| AGTATTTATCGTAACTGTCT+TGG | 0.460133 | 3.3:+93656934 | None:intergenic |
| CGGCCATTTCTTCATGGAGG+CGG | 0.460343 | 3.3:+93656751 | None:intergenic |
| GGCCATTTCTTCATGGAGGC+GGG | 0.483293 | 3.3:+93656752 | None:intergenic |
| ACCGCCGGCGAGGAGGGCTC+CGG | 0.486822 | 3.3:+93657049 | None:intergenic |
| CTCGATGTAGGTTGCGGTGT+TGG | 0.487116 | 3.3:-93656693 | MS.gene69360:CDS |
| CTCAGCCACCGTCTCATCCA+TGG | 0.489785 | 3.3:-93656230 | MS.gene69360:CDS |
| AAACGCGCCACCGATCTATC+CGG | 0.493820 | 3.3:-93656981 | MS.gene69360:CDS |
| ATTATTCAAGGTATTGAAAG+AGG | 0.496602 | 3.3:-93656342 | MS.gene69360:CDS |
| ACCCTTTCTCTCTTCTGCAC+CGG | 0.497665 | 3.3:-93657068 | MS.gene69360:CDS |
| AAAGAGGTGATGCGCTTCCT+GGG | 0.500216 | 3.3:-93656326 | MS.gene69360:CDS |
| TCTCTATGCGATGTTGTTTG+TGG | 0.500320 | 3.3:-93656558 | MS.gene69360:CDS |
| CTCGGCCCTGCCGAACGAAA+AGG | 0.505038 | 3.3:-93657005 | MS.gene69360:CDS |
| GCTGAAGCGGCTAAGAAGGT+TGG | 0.506568 | 3.3:-93656282 | MS.gene69360:CDS |
| ATGAGACGCGATAGCTCTCA+TGG | 0.507512 | 3.3:+93656665 | None:intergenic |
| GATGTAGGTTGCGGTGTTGG+TGG | 0.513870 | 3.3:-93656690 | MS.gene69360:CDS |
| TATAGCTGAAGCGGCTAAGA+AGG | 0.514512 | 3.3:-93656286 | MS.gene69360:CDS |
| GGTGATAAAATTCTCGATGT+AGG | 0.518771 | 3.3:-93656705 | MS.gene69360:CDS |
| TTTAACCTCGATTAGATCTA+CGG | 0.521898 | 3.3:+93656731 | None:intergenic |
| AAGACAGTTACGATAAATAC+TGG | 0.522518 | 3.3:-93656932 | MS.gene69360:CDS |
| CATGGAGGCGGGTGGCATCA+CGG | 0.523913 | 3.3:+93656763 | None:intergenic |
| TTCAGCGGAAATTGAACCGC+CGG | 0.527269 | 3.3:+93656962 | None:intergenic |
| GCTTTGGGAATTGCACCTAA+AGG | 0.533645 | 3.3:-93656141 | MS.gene69360:CDS |
| ATGTAGGTTGCGGTGTTGGT+GGG | 0.535396 | 3.3:-93656689 | MS.gene69360:CDS |
| TCGAAGCTGTTATTGGGAAA+CGG | 0.537800 | 3.3:+93656519 | None:intergenic |
| GGTTTGAGGTTGTTAAGGAA+CGG | 0.540682 | 3.3:-93656260 | MS.gene69360:CDS |
| TCAGCGTAGGTTCTAAGCCC+AGG | 0.541956 | 3.3:+93656309 | None:intergenic |
| TCAGATTTACCGGGAATAGC+GGG | 0.543231 | 3.3:+93656786 | None:intergenic |
| GTAGAGACCGCCGGCGAGGA+GGG | 0.547296 | 3.3:+93657043 | None:intergenic |
| CTGCAGAGAATCATGTGCAT+AGG | 0.550727 | 3.3:+93656042 | None:intergenic |
| CTACGCTGATATAGCTGAAG+CGG | 0.552632 | 3.3:-93656295 | MS.gene69360:CDS |
| AATTGAACCGCCGGATAGAT+CGG | 0.553673 | 3.3:+93656971 | None:intergenic |
| ACCGGAGCCCTCCTCGCCGG+CGG | 0.554746 | 3.3:-93657050 | MS.gene69360:CDS |
| GTCAGATTTACCGGGAATAG+CGG | 0.555781 | 3.3:+93656785 | None:intergenic |
| GCGTAACCATATTGTGGTAA+CGG | 0.558003 | 3.3:-93656172 | MS.gene69360:CDS |
| TGCACCGGAGCCCTCCTCGC+CGG | 0.559092 | 3.3:-93657053 | MS.gene69360:CDS |
| AAAATTCTCGATGTAGGTTG+CGG | 0.567893 | 3.3:-93656699 | MS.gene69360:CDS |
| AAGATTAGGCGCGTGGCACG+TGG | 0.572185 | 3.3:+93656476 | None:intergenic |
| CATTTCTTCATGGAGGCGGG+TGG | 0.572835 | 3.3:+93656755 | None:intergenic |
| TCGTTACCGATATTTACGAA+TGG | 0.576012 | 3.3:-93656836 | MS.gene69360:CDS |
| CGGGTCCACCATGGATGAGA+CGG | 0.590737 | 3.3:+93656222 | None:intergenic |
| TTTCCCAATAACAGCTTCGA+CGG | 0.594298 | 3.3:-93656516 | MS.gene69360:CDS |
| TTATTGGCGTAACCATATTG+TGG | 0.596355 | 3.3:-93656178 | MS.gene69360:CDS |
| CGCTTCAGCTATATCAGCGT+AGG | 0.600324 | 3.3:+93656296 | None:intergenic |
| TATGAAACGTAAAGAGCACC+AGG | 0.603847 | 3.3:+93656417 | None:intergenic |
| GTTACCGATATTTACGAATG+GGG | 0.610865 | 3.3:-93656834 | MS.gene69360:CDS |
| AACGAACCAGTAGAGACCGC+CGG | 0.612867 | 3.3:+93657034 | None:intergenic |
| AGTAGAGACCGCCGGCGAGG+AGG | 0.613500 | 3.3:+93657042 | None:intergenic |
| CTTCTTCAAGATTAGGCGCG+TGG | 0.615214 | 3.3:+93656469 | None:intergenic |
| TCCGGTGCAGAAGAGAGAAA+GGG | 0.624782 | 3.3:+93657067 | None:intergenic |
| GGACCCGTTTGAAAATGGGT+CGG | 0.636433 | 3.3:-93656206 | MS.gene69360:CDS |
| ACCAGTAGAGACCGCCGGCG+AGG | 0.640194 | 3.3:+93657039 | None:intergenic |
| CAGCATCTCATGAACATCAA+CGG | 0.644005 | 3.3:+93656116 | None:intergenic |
| GCATCACGGTCAGATTTACC+GGG | 0.648477 | 3.3:+93656777 | None:intergenic |
| CGCGCCACCGATCTATCCGG+CGG | 0.666165 | 3.3:-93656978 | MS.gene69360:CDS |
| AGCCACCGTCTCATCCATGG+TGG | 0.669559 | 3.3:-93656227 | MS.gene69360:CDS |
| TGAGACGCGATAGCTCTCAT+GGG | 0.676213 | 3.3:+93656666 | None:intergenic |
| GTCCACCATGGATGAGACGG+TGG | 0.682031 | 3.3:+93656225 | None:intergenic |
| CTACGGCCATTTCTTCATGG+AGG | 0.696293 | 3.3:+93656748 | None:intergenic |
| TGAACCGCCGGATAGATCGG+TGG | 0.706847 | 3.3:+93656974 | None:intergenic |
| GAAATCTGGAACTTTCTCAG+CGG | 0.713889 | 3.3:+93656878 | None:intergenic |
| AATGGCCGTAGATCTAATCG+AGG | 0.723393 | 3.3:-93656736 | MS.gene69360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGTTGAATTATCTTCTTT+TGG | + | chr3.3:93657076-93657095 | None:intergenic | 20.0% |
| ! | AAATTACACAACAAAAAAGC+TGG | - | chr3.3:93656500-93656519 | MS.gene69360:CDS | 25.0% |
| ! | TCTTTACGTTTCATATGAAT+GGG | - | chr3.3:93656679-93656698 | MS.gene69360:CDS | 25.0% |
| !! | AAGTTTACGCTGAAATTTTT+AGG | - | chr3.3:93656639-93656658 | MS.gene69360:CDS | 25.0% |
| !! | AGTTTACGCTGAAATTTTTA+GGG | - | chr3.3:93656640-93656659 | MS.gene69360:CDS | 25.0% |
| !!! | ATTATTCAAGGTATTGAAAG+AGG | - | chr3.3:93656746-93656765 | MS.gene69360:CDS | 25.0% |
| AAGACAGTTACGATAAATAC+TGG | - | chr3.3:93656156-93656175 | MS.gene69360:CDS | 30.0% | |
| AGTATTTATCGTAACTGTCT+TGG | + | chr3.3:93656157-93656176 | None:intergenic | 30.0% | |
| CTCTTTACGTTTCATATGAA+TGG | - | chr3.3:93656678-93656697 | MS.gene69360:CDS | 30.0% | |
| GAACATGTTGAGATTATTCA+AGG | - | chr3.3:93656734-93656753 | MS.gene69360:CDS | 30.0% | |
| TTTAACCTCGATTAGATCTA+CGG | + | chr3.3:93656360-93656379 | None:intergenic | 30.0% | |
| ! | TAAAATGTATCGACGAAATC+TGG | + | chr3.3:93656227-93656246 | None:intergenic | 30.0% |
| !!! | ATTTTTAGGGTTTTGAAACC+TGG | - | chr3.3:93656653-93656672 | MS.gene69360:CDS | 30.0% |
| AAAATTCTCGATGTAGGTTG+CGG | - | chr3.3:93656389-93656408 | MS.gene69360:CDS | 35.0% | |
| CGTTACCGATATTTACGAAT+GGG | - | chr3.3:93656253-93656272 | MS.gene69360:CDS | 35.0% | |
| GATCTAATCGAGGTTAAATC+TGG | - | chr3.3:93656362-93656381 | MS.gene69360:CDS | 35.0% | |
| GCGTAAACTTCTTCAAGATT+AGG | + | chr3.3:93656629-93656648 | None:intergenic | 35.0% | |
| GGTGATAAAATTCTCGATGT+AGG | - | chr3.3:93656383-93656402 | MS.gene69360:CDS | 35.0% | |
| GTTACCGATATTTACGAATG+GGG | - | chr3.3:93656254-93656273 | MS.gene69360:CDS | 35.0% | |
| TCGTTACCGATATTTACGAA+TGG | - | chr3.3:93656252-93656271 | MS.gene69360:CDS | 35.0% | |
| TTATTGGCGTAACCATATTG+TGG | - | chr3.3:93656910-93656929 | MS.gene69360:CDS | 35.0% | |
| AAATGGGTCGGATTGCTTAT+TGG | - | chr3.3:93656894-93656913 | MS.gene69360:CDS | 40.0% | |
| ACAGAACCGTTACCACAATA+TGG | + | chr3.3:93656925-93656944 | None:intergenic | 40.0% | |
| CAGCATCTCATGAACATCAA+CGG | + | chr3.3:93656975-93656994 | None:intergenic | 40.0% | |
| CCAACCCCATTCGTAAATAT+CGG | + | chr3.3:93656261-93656280 | None:intergenic | 40.0% | |
| CGATATTTACGAATGGGGTT+GGG | - | chr3.3:93656259-93656278 | MS.gene69360:CDS | 40.0% | |
| GATATTTACGAATGGGGTTG+GGG | - | chr3.3:93656260-93656279 | MS.gene69360:CDS | 40.0% | |
| GCGTAACCATATTGTGGTAA+CGG | - | chr3.3:93656916-93656935 | MS.gene69360:CDS | 40.0% | |
| TCGAAGCTGTTATTGGGAAA+CGG | + | chr3.3:93656572-93656591 | None:intergenic | 40.0% | |
| TGAACATCAACGGTTCCTTT+AGG | + | chr3.3:93656965-93656984 | None:intergenic | 40.0% | |
| TTTCCCAATAACAGCTTCGA+CGG | - | chr3.3:93656572-93656591 | MS.gene69360:CDS | 40.0% | |
| ! | AATCCGACCCATTTTCAAAC+GGG | + | chr3.3:93656888-93656907 | None:intergenic | 40.0% |
| ! | CAATCCGACCCATTTTCAAA+CGG | + | chr3.3:93656889-93656908 | None:intergenic | 40.0% |
| ! | GAAATCTGGAACTTTCTCAG+CGG | + | chr3.3:93656213-93656232 | None:intergenic | 40.0% |
| ! | GGTTTGAGGTTGTTAAGGAA+CGG | - | chr3.3:93656828-93656847 | MS.gene69360:CDS | 40.0% |
| ! | GTTTGAGGTTGTTAAGGAAC+GGG | - | chr3.3:93656829-93656848 | MS.gene69360:CDS | 40.0% |
| ! | TCTCTATGCGATGTTGTTTG+TGG | - | chr3.3:93656530-93656549 | MS.gene69360:CDS | 40.0% |
| !! | AATAGCGGGTGAAAAATGGA+AGG | + | chr3.3:93656291-93656310 | None:intergenic | 40.0% |
| !! | TATGAAACGTAAAGAGCACC+AGG | + | chr3.3:93656674-93656693 | None:intergenic | 40.0% |
| !!! | ACTGCTGACTTTTTGACAAG+AGG | - | chr3.3:93657001-93657020 | MS.gene69360:CDS | 40.0% |
| !!! | ACTGTCTTGGACTTTTTCAG+CGG | + | chr3.3:93656144-93656163 | None:intergenic | 40.0% |
| !!! | CTGCTGACTTTTTGACAAGA+GGG | - | chr3.3:93657002-93657021 | MS.gene69360:CDS | 40.0% |
| !!! | TGCTGACTTTTTGACAAGAG+GGG | - | chr3.3:93657003-93657022 | MS.gene69360:CDS | 40.0% |
| AATGGCCGTAGATCTAATCG+AGG | - | chr3.3:93656352-93656371 | MS.gene69360:CDS | 45.0% | |
| AATTGAACCGCCGGATAGAT+CGG | + | chr3.3:93656120-93656139 | None:intergenic | 45.0% | |
| CCGATATTTACGAATGGGGT+TGG | - | chr3.3:93656258-93656277 | MS.gene69360:CDS | 45.0% | |
| CTACGCTGATATAGCTGAAG+CGG | - | chr3.3:93656793-93656812 | MS.gene69360:CDS | 45.0% | |
| CTGCAGAGAATCATGTGCAT+AGG | + | chr3.3:93657049-93657068 | None:intergenic | 45.0% | |
| GATCTACGGCCATTTCTTCA+TGG | + | chr3.3:93656346-93656365 | None:intergenic | 45.0% | |
| GTAACGGTTCTGTCTGCTTT+GGG | - | chr3.3:93656932-93656951 | MS.gene69360:CDS | 45.0% | |
| GTCAGATTTACCGGGAATAG+CGG | + | chr3.3:93656306-93656325 | None:intergenic | 45.0% | |
| TATAGCTGAAGCGGCTAAGA+AGG | - | chr3.3:93656802-93656821 | MS.gene69360:CDS | 45.0% | |
| TCAGATTTACCGGGAATAGC+GGG | + | chr3.3:93656305-93656324 | None:intergenic | 45.0% | |
| ! | ATTTTCAAACGGGTCCACCA+TGG | + | chr3.3:93656878-93656897 | None:intergenic | 45.0% |
| ! | CAGCGGTTTCGATCTCTTTT+GGG | + | chr3.3:93656196-93656215 | None:intergenic | 45.0% |
| ! | CATTTTTCACCCGCTATTCC+CGG | - | chr3.3:93656293-93656312 | MS.gene69360:CDS | 45.0% |
| ! | GGTTGGGTTTGAGGTTGTTA+AGG | - | chr3.3:93656823-93656842 | MS.gene69360:CDS | 45.0% |
| ! | TCAGCGGTTTCGATCTCTTT+TGG | + | chr3.3:93656197-93656216 | None:intergenic | 45.0% |
| ! | TGGTGGACCCGTTTGAAAAT+GGG | - | chr3.3:93656878-93656897 | MS.gene69360:CDS | 45.0% |
| !! | ATGGTGGACCCGTTTGAAAA+TGG | - | chr3.3:93656877-93656896 | MS.gene69360:CDS | 45.0% |
| !! | GCTGACTTTTTGACAAGAGG+GGG | - | chr3.3:93657004-93657023 | MS.gene69360:CDS | 45.0% |
| !! | GCTTTGGGAATTGCACCTAA+AGG | - | chr3.3:93656947-93656966 | MS.gene69360:CDS | 45.0% |
| AAAGAGGTGATGCGCTTCCT+GGG | - | chr3.3:93656762-93656781 | MS.gene69360:CDS | 50.0% | |
| ACCCTTTCTCTCTTCTGCAC+CGG | - | chr3.3:93656020-93656039 | MS.gene69360:CDS | 50.0% | |
| ATGAGACGCGATAGCTCTCA+TGG | + | chr3.3:93656426-93656445 | None:intergenic | 50.0% | |
| CATTCACGCGCTAACGTTGT+TGG | - | chr3.3:93656443-93656462 | MS.gene69360:CDS | 50.0% | |
| CGCTTCAGCTATATCAGCGT+AGG | + | chr3.3:93656795-93656814 | None:intergenic | 50.0% | |
| CTACGGCCATTTCTTCATGG+AGG | + | chr3.3:93656343-93656362 | None:intergenic | 50.0% | |
| CTGAAGCGGCTAAGAAGGTT+GGG | - | chr3.3:93656807-93656826 | MS.gene69360:CDS | 50.0% | |
| CTTCTTCAAGATTAGGCGCG+TGG | + | chr3.3:93656622-93656641 | None:intergenic | 50.0% | |
| GCATCACGGTCAGATTTACC+GGG | + | chr3.3:93656314-93656333 | None:intergenic | 50.0% | |
| GGACCCGTTTGAAAATGGGT+CGG | - | chr3.3:93656882-93656901 | MS.gene69360:CDS | 50.0% | |
| GGCATCACGGTCAGATTTAC+CGG | + | chr3.3:93656315-93656334 | None:intergenic | 50.0% | |
| GGCTAAGAAGGTTGGGTTTG+AGG | - | chr3.3:93656814-93656833 | MS.gene69360:CDS | 50.0% | |
| GGTTGTTAAGGAACGGGATC+TGG | - | chr3.3:93656835-93656854 | MS.gene69360:CDS | 50.0% | |
| TCCGGTGCAGAAGAGAGAAA+GGG | + | chr3.3:93656024-93656043 | None:intergenic | 50.0% | |
| TGAGACGCGATAGCTCTCAT+GGG | + | chr3.3:93656425-93656444 | None:intergenic | 50.0% | |
| TTCAGCGGAAATTGAACCGC+CGG | + | chr3.3:93656129-93656148 | None:intergenic | 50.0% | |
| TTGACAAGAGGGGGTGATAC+TGG | - | chr3.3:93657013-93657032 | MS.gene69360:CDS | 50.0% | |
| ! | CGGTTTCGATCTCTTTTGGG+CGG | + | chr3.3:93656193-93656212 | None:intergenic | 50.0% |
| ! | GGTAACGGTTCTGTCTGCTT+TGG | - | chr3.3:93656931-93656950 | MS.gene69360:CDS | 50.0% |
| ! | GTTTGCCTTTTCGTTCGGCA+GGG | + | chr3.3:93656091-93656110 | None:intergenic | 50.0% |
| ! | TTTCGATCTCTTTTGGGCGG+CGG | + | chr3.3:93656190-93656209 | None:intergenic | 50.0% |
| !! | ATGTAGGTTGCGGTGTTGGT+GGG | - | chr3.3:93656399-93656418 | MS.gene69360:CDS | 50.0% |
| !! | CGGGAATAGCGGGTGAAAAA+TGG | + | chr3.3:93656295-93656314 | None:intergenic | 50.0% |
| !! | TACTGGTTCGTTTGCGTCCT+CGG | - | chr3.3:93656065-93656084 | MS.gene69360:CDS | 50.0% |
| AAACGCGCCACCGATCTATC+CGG | - | chr3.3:93656107-93656126 | MS.gene69360:CDS | 55.0% | |
| AACGAACCAGTAGAGACCGC+CGG | + | chr3.3:93656057-93656076 | None:intergenic | 55.0% | |
| CACCCGCCTCCATGAAGAAA+TGG | - | chr3.3:93656334-93656353 | MS.gene69360:CDS | 55.0% | |
| CATTTCTTCATGGAGGCGGG+TGG | + | chr3.3:93656336-93656355 | None:intergenic | 55.0% | |
| CGGCCATTTCTTCATGGAGG+CGG | + | chr3.3:93656340-93656359 | None:intergenic | 55.0% | |
| CTCCGGTGCAGAAGAGAGAA+AGG | + | chr3.3:93656025-93656044 | None:intergenic | 55.0% | |
| CTCGATGTAGGTTGCGGTGT+TGG | - | chr3.3:93656395-93656414 | MS.gene69360:CDS | 55.0% | |
| GAAAGAGGTGATGCGCTTCC+TGG | - | chr3.3:93656761-93656780 | MS.gene69360:CDS | 55.0% | |
| GCGCCGTCGAAGCTGTTATT+GGG | + | chr3.3:93656578-93656597 | None:intergenic | 55.0% | |
| GCTGAAGCGGCTAAGAAGGT+TGG | - | chr3.3:93656806-93656825 | MS.gene69360:CDS | 55.0% | |
| GGCCATTTCTTCATGGAGGC+GGG | + | chr3.3:93656339-93656358 | None:intergenic | 55.0% | |
| ! | CGTTTGCCTTTTCGTTCGGC+AGG | + | chr3.3:93656092-93656111 | None:intergenic | 55.0% |
| ! | GATGTAGGTTGCGGTGTTGG+TGG | - | chr3.3:93656398-93656417 | MS.gene69360:CDS | 55.0% |
| ! | GGCGCGTTTGCCTTTTCGTT+CGG | + | chr3.3:93656096-93656115 | None:intergenic | 55.0% |
| !! | TCAGCGTAGGTTCTAAGCCC+AGG | + | chr3.3:93656782-93656801 | None:intergenic | 55.0% |
| AAGATTAGGCGCGTGGCACG+TGG | + | chr3.3:93656615-93656634 | None:intergenic | 60.0% | |
| AGCCACCGTCTCATCCATGG+TGG | - | chr3.3:93656861-93656880 | MS.gene69360:CDS | 60.0% | |
| CGCGCCGTCGAAGCTGTTAT+TGG | + | chr3.3:93656579-93656598 | None:intergenic | 60.0% | |
| CGGGTCCACCATGGATGAGA+CGG | + | chr3.3:93656869-93656888 | None:intergenic | 60.0% | |
| CTCAGCCACCGTCTCATCCA+TGG | - | chr3.3:93656858-93656877 | MS.gene69360:CDS | 60.0% | |
| GTCCACCATGGATGAGACGG+TGG | + | chr3.3:93656866-93656885 | None:intergenic | 60.0% | |
| TGAACCGCCGGATAGATCGG+TGG | + | chr3.3:93656117-93656136 | None:intergenic | 60.0% | |
| CATGGAGGCGGGTGGCATCA+CGG | + | chr3.3:93656328-93656347 | None:intergenic | 65.0% | |
| CTCGGCCCTGCCGAACGAAA+AGG | - | chr3.3:93656083-93656102 | MS.gene69360:CDS | 65.0% | |
| ! | CTTTTCGTTCGGCAGGGCCG+AGG | + | chr3.3:93656085-93656104 | None:intergenic | 65.0% |
| ACCAGTAGAGACCGCCGGCG+AGG | + | chr3.3:93656052-93656071 | None:intergenic | 70.0% | |
| AGTAGAGACCGCCGGCGAGG+AGG | + | chr3.3:93656049-93656068 | None:intergenic | 70.0% | |
| CGCGCCACCGATCTATCCGG+CGG | - | chr3.3:93656110-93656129 | MS.gene69360:CDS | 70.0% | |
| GTAGAGACCGCCGGCGAGGA+GGG | + | chr3.3:93656048-93656067 | None:intergenic | 70.0% | |
| TCCTCGCCGGCGGTCTCTAC+TGG | - | chr3.3:93656048-93656067 | MS.gene69360:CDS | 70.0% | |
| TGCACCGGAGCCCTCCTCGC+CGG | - | chr3.3:93656035-93656054 | MS.gene69360:CDS | 75.0% | |
| ! | ACCGCCGGCGAGGAGGGCTC+CGG | + | chr3.3:93656042-93656061 | None:intergenic | 80.0% |
| ! | ACCGGAGCCCTCCTCGCCGG+CGG | - | chr3.3:93656038-93656057 | MS.gene69360:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 93656014 | 93657096 | 93656014 | ID=MS.gene69360 |
| chr3.3 | mRNA | 93656014 | 93657096 | 93656014 | ID=MS.gene69360.t1;Parent=MS.gene69360 |
| chr3.3 | exon | 93656014 | 93657096 | 93656014 | ID=MS.gene69360.t1.exon1;Parent=MS.gene69360.t1 |
| chr3.3 | CDS | 93656014 | 93657096 | 93656014 | ID=cds.MS.gene69360.t1;Parent=MS.gene69360.t1 |
| Gene Sequence |
| Protein sequence |
