Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92408.t1 | XP_013445083.1 | 97.8 | 313 | 7 | 0 | 1 | 313 | 1 | 313 | 5.80E-168 | 600.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92408.t1 | P51074 | 68.5 | 314 | 98 | 1 | 1 | 313 | 1 | 314 | 3.3e-119 | 429.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92408.t1 | O65848 | 97.8 | 313 | 7 | 0 | 1 | 313 | 1 | 313 | 4.2e-168 | 600.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052494 | MS.gene92408 | 0.818416 | 1.98E-52 | -1.69E-46 |
| MS.gene055159 | MS.gene92408 | 0.811008 | 8.68E-51 | -1.69E-46 |
| MS.gene056387 | MS.gene92408 | -0.806997 | 6.27E-50 | -1.69E-46 |
| MS.gene057717 | MS.gene92408 | 0.80049 | 1.41E-48 | -1.69E-46 |
| MS.gene058418 | MS.gene92408 | 0.808753 | 2.65E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92408.t1 | MTR_8g038210 | 97.764 | 313 | 7 | 0 | 1 | 313 | 1 | 313 | 0.0 | 624 |
| MS.gene92408.t1 | MTR_8g038210 | 93.930 | 313 | 19 | 0 | 1 | 313 | 1 | 313 | 0.0 | 599 |
| MS.gene92408.t1 | MTR_8g038220 | 77.707 | 314 | 69 | 1 | 1 | 313 | 1 | 314 | 3.77e-180 | 500 |
| MS.gene92408.t1 | MTR_8g038220 | 76.752 | 314 | 71 | 2 | 1 | 313 | 1 | 313 | 5.13e-176 | 489 |
| MS.gene92408.t1 | MTR_3g018780 | 71.975 | 314 | 87 | 1 | 1 | 313 | 1 | 314 | 3.92e-167 | 467 |
| MS.gene92408.t1 | MTR_3g018790 | 68.790 | 314 | 97 | 1 | 1 | 313 | 1 | 314 | 1.38e-159 | 447 |
| MS.gene92408.t1 | MTR_8g038180 | 71.154 | 312 | 89 | 1 | 1 | 311 | 1 | 312 | 9.71e-159 | 446 |
| MS.gene92408.t1 | MTR_3g018790 | 67.769 | 242 | 77 | 1 | 73 | 313 | 19 | 260 | 1.73e-117 | 339 |
| MS.gene92408.t1 | MTR_0276s0050 | 51.429 | 315 | 151 | 2 | 1 | 313 | 1 | 315 | 2.84e-101 | 300 |
| MS.gene92408.t1 | MTR_2g031980 | 44.728 | 313 | 172 | 1 | 1 | 312 | 1 | 313 | 8.60e-98 | 291 |
| MS.gene92408.t1 | MTR_5g063670 | 47.756 | 312 | 161 | 2 | 1 | 310 | 1 | 312 | 3.90e-97 | 289 |
| MS.gene92408.t1 | MTR_3g018920 | 57.143 | 210 | 59 | 1 | 1 | 210 | 1 | 179 | 1.93e-79 | 239 |
| MS.gene92408.t1 | MTR_8g038150 | 41.139 | 316 | 181 | 2 | 1 | 311 | 1 | 316 | 9.62e-78 | 240 |
| MS.gene92408.t1 | MTR_8g107640 | 36.825 | 315 | 197 | 2 | 1 | 313 | 1 | 315 | 1.39e-69 | 219 |
| MS.gene92408.t1 | MTR_1g033560 | 37.460 | 315 | 193 | 4 | 1 | 312 | 1 | 314 | 1.54e-66 | 211 |
| MS.gene92408.t1 | MTR_6g071605 | 37.500 | 312 | 193 | 2 | 1 | 310 | 1 | 312 | 6.74e-66 | 209 |
| MS.gene92408.t1 | MTR_6g071615 | 37.179 | 312 | 194 | 2 | 1 | 310 | 1 | 312 | 3.36e-63 | 202 |
| MS.gene92408.t1 | MTR_1g112520 | 34.615 | 312 | 202 | 2 | 1 | 310 | 1 | 312 | 7.86e-59 | 191 |
| MS.gene92408.t1 | MTR_6g071595 | 35.235 | 298 | 192 | 1 | 14 | 310 | 15 | 312 | 7.55e-57 | 186 |
| MS.gene92408.t1 | MTR_8g038170 | 35.962 | 317 | 177 | 8 | 13 | 311 | 4 | 312 | 8.04e-50 | 168 |
| MS.gene92408.t1 | MTR_8g038170 | 35.962 | 317 | 177 | 8 | 13 | 311 | 4 | 312 | 8.04e-50 | 168 |
| MS.gene92408.t1 | MTR_3g018925 | 70.103 | 97 | 29 | 0 | 217 | 313 | 13 | 109 | 1.02e-40 | 138 |
| MS.gene92408.t1 | MTR_6g071595 | 33.191 | 235 | 156 | 1 | 14 | 247 | 15 | 249 | 7.29e-40 | 140 |
| MS.gene92408.t1 | MTR_6g028030 | 26.667 | 315 | 214 | 7 | 8 | 311 | 2 | 310 | 7.39e-27 | 107 |
| MS.gene92408.t1 | MTR_8g038090 | 50.000 | 72 | 31 | 2 | 243 | 311 | 22 | 91 | 9.83e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92408.t1 | AT5G12380 | 54.341 | 311 | 141 | 1 | 1 | 310 | 1 | 311 | 6.42e-123 | 355 |
| MS.gene92408.t1 | AT1G35720 | 51.420 | 317 | 149 | 4 | 1 | 313 | 1 | 316 | 1.38e-106 | 313 |
| MS.gene92408.t1 | AT5G10230 | 51.923 | 312 | 148 | 2 | 1 | 310 | 1 | 312 | 7.55e-106 | 311 |
| MS.gene92408.t1 | AT5G10220 | 51.274 | 314 | 149 | 3 | 1 | 310 | 1 | 314 | 1.32e-102 | 303 |
| MS.gene92408.t1 | AT5G65020 | 51.757 | 313 | 148 | 3 | 1 | 310 | 1 | 313 | 3.09e-102 | 302 |
| MS.gene92408.t1 | AT5G65020 | 51.389 | 288 | 138 | 2 | 25 | 310 | 11 | 298 | 2.53e-93 | 279 |
| MS.gene92408.t1 | AT2G38760 | 41.824 | 318 | 177 | 3 | 1 | 310 | 1 | 318 | 5.09e-80 | 246 |
| MS.gene92408.t1 | AT1G68090 | 36.102 | 313 | 197 | 3 | 1 | 310 | 1 | 313 | 7.15e-61 | 197 |
| MS.gene92408.t1 | AT2G38750 | 33.766 | 308 | 178 | 7 | 25 | 313 | 2 | 302 | 1.05e-43 | 152 |
| MS.gene92408.t1 | AT2G38750 | 33.766 | 308 | 178 | 7 | 25 | 313 | 19 | 319 | 1.10e-43 | 152 |
| MS.gene92408.t1 | AT1G68090 | 34.400 | 250 | 161 | 3 | 1 | 247 | 1 | 250 | 2.09e-42 | 147 |
Find 77 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCAGTTTGTGCCAATTT+TGG | 0.171052 | 8.4:-60218624 | None:intergenic |
| CTCACATTCAAGAGCTCTTC+GGG | 0.256943 | 8.4:-60218231 | None:intergenic |
| AAACATCTGAGATGACTTTC+AGG | 0.262103 | 8.4:-60219369 | None:intergenic |
| TTAATCTTTACAGAAGCTTT+TGG | 0.285693 | 8.4:+60218933 | MS.gene92408:intron |
| TAGGGCTAGTGACTGCATTT+AGG | 0.307120 | 8.4:+60218580 | MS.gene92408:CDS |
| TGATGAGATCAATCCAAAAT+TGG | 0.309418 | 8.4:+60218611 | MS.gene92408:CDS |
| GCACTCCTTGGAAGAAGATT+TGG | 0.320054 | 8.4:+60218278 | MS.gene92408:CDS |
| TGCGGAACGTGATGCTGTTT+TGG | 0.338707 | 8.4:+60218143 | MS.gene92408:CDS |
| CCTTGTAGTCAAGATCCTTA+TGG | 0.357139 | 8.4:-60218697 | None:intergenic |
| CAGCATCTTCATTGGGAGAA+TGG | 0.357218 | 8.4:-60217616 | None:intergenic |
| AATGGTTGCTGGGAGCAATA+AGG | 0.357762 | 8.4:-60217598 | None:intergenic |
| AAGTTCCTTCTCACTCTCTT+GGG | 0.370043 | 8.4:+60219457 | MS.gene92408:CDS |
| GAAGTTCCTTCTCACTCTCT+TGG | 0.389750 | 8.4:+60219456 | MS.gene92408:CDS |
| TAGAGCTTCAGCATCTTCAT+TGG | 0.413067 | 8.4:-60217624 | None:intergenic |
| TCTCACATTCAAGAGCTCTT+CGG | 0.418637 | 8.4:-60218232 | None:intergenic |
| AGATCCTTATGGCTTCTTCA+TGG | 0.424810 | 8.4:-60218686 | None:intergenic |
| GGCGAAGATGGCCGGAGGTG+TGG | 0.427955 | 8.4:-60218305 | None:intergenic |
| TTCATTGGGAGAATGGTTGC+TGG | 0.439937 | 8.4:-60217609 | None:intergenic |
| AGAGCTTCAGCATCTTCATT+GGG | 0.446820 | 8.4:-60217623 | None:intergenic |
| GGTTGAAAGTTGCAATCAGC+TGG | 0.450175 | 8.4:-60218728 | None:intergenic |
| GATTTGGCTGCCCACACCTC+CGG | 0.452153 | 8.4:+60218294 | MS.gene92408:CDS |
| GCTGTGGCAAAGGAAACTTC+AGG | 0.453417 | 8.4:+60219424 | MS.gene92408:CDS |
| ACTTGCCTGGCGAAGATGGC+CGG | 0.459954 | 8.4:-60218313 | None:intergenic |
| CACCTCCGGCCATCTTCGCC+AGG | 0.462326 | 8.4:+60218308 | MS.gene92408:CDS |
| AAGGACTTGCCTGGCGAAGA+TGG | 0.468874 | 8.4:-60218317 | None:intergenic |
| GCGAAGATGGCCGGAGGTGT+GGG | 0.470103 | 8.4:-60218304 | None:intergenic |
| TGAGATCAAAGGAGACTTTG+AGG | 0.477521 | 8.4:+60218004 | MS.gene92408:CDS |
| ATGGTTGCTGGGAGCAATAA+GGG | 0.478955 | 8.4:-60217597 | None:intergenic |
| TGAGGATCTTATCAAACGAT+TGG | 0.500715 | 8.4:+60217977 | MS.gene92408:CDS |
| AAATTGGCACAAACTGAAGC+TGG | 0.505178 | 8.4:+60218627 | MS.gene92408:CDS |
| CAAACGCTACAAGCACTCCT+TGG | 0.517630 | 8.4:+60218266 | MS.gene92408:CDS |
| CCATAAGGATCTTGACTACA+AGG | 0.517780 | 8.4:+60218697 | MS.gene92408:CDS |
| TCTTGAGCATGCTGTGGCAA+AGG | 0.517846 | 8.4:+60219414 | MS.gene92408:CDS |
| CGAGATGCAATCAAGAAGGT+TGG | 0.532695 | 8.4:+60219295 | MS.gene92408:CDS |
| GTGACTGCATTTAGGTATGT+TGG | 0.533407 | 8.4:+60218588 | MS.gene92408:CDS |
| CGCCCTTCTTGAGCATGCTG+TGG | 0.534251 | 8.4:+60219408 | MS.gene92408:CDS |
| TTTATCATATACCTTAGTGA+TGG | 0.537206 | 8.4:-60218775 | None:intergenic |
| TTGCCACAGCATGCTCAAGA+AGG | 0.539638 | 8.4:-60219411 | None:intergenic |
| GAAGCCATGAAGAAGCCATA+AGG | 0.541126 | 8.4:+60218682 | MS.gene92408:CDS |
| CAAATCAGAAAAGCTTATGA+AGG | 0.541965 | 8.4:+60217945 | MS.gene92408:CDS |
| CTGTGGCAAAGGAAACTTCA+GGG | 0.542389 | 8.4:+60219425 | MS.gene92408:CDS |
| TCATGTTAAGTACTATGAAA+AGG | 0.546698 | 8.4:+60219014 | MS.gene92408:CDS |
| ATCATATACCTTAGTGATGG+AGG | 0.549366 | 8.4:-60218772 | None:intergenic |
| TGCCACAGCATGCTCAAGAA+GGG | 0.550284 | 8.4:-60219410 | None:intergenic |
| GAGTCAGTGAAAGAGAAGAA+AGG | 0.551826 | 8.4:+60218660 | MS.gene92408:CDS |
| AAAACTGTGATAACAATACT+TGG | 0.555304 | 8.4:+60217897 | MS.gene92408:CDS |
| TAACATGATCATTGAAGCAT+CGG | 0.562381 | 8.4:-60218999 | None:intergenic |
| TCATTGGGAGAATGGTTGCT+GGG | 0.565172 | 8.4:-60217608 | None:intergenic |
| AGATGCTGAAGCTCTAAGAA+AGG | 0.567867 | 8.4:+60217631 | MS.gene92408:CDS |
| ACGGGTGAGCGCATCCTCAT+CGG | 0.568327 | 8.4:-60219320 | None:intergenic |
| AACAGAAAGCTGTGTACCGT+TGG | 0.569853 | 8.4:+60218109 | MS.gene92408:intron |
| TTATGAAGGAATTTATAATG+AGG | 0.573543 | 8.4:+60217959 | MS.gene92408:CDS |
| GAGCTCTGCTCACAACCACA+CGG | 0.574900 | 8.4:-60219339 | None:intergenic |
| TCATGGTACCTCCATCACTA+AGG | 0.583313 | 8.4:+60218764 | MS.gene92408:CDS |
| AAAACAGCATCACGTTCCGC+AGG | 0.584641 | 8.4:-60218141 | None:intergenic |
| AGTTCCTTCTCACTCTCTTG+GGG | 0.584889 | 8.4:+60219458 | MS.gene92408:CDS |
| GGCAGCCAAATCTTCTTCCA+AGG | 0.587165 | 8.4:-60218283 | None:intergenic |
| GCAAATGTTGCTATCAAGAG+TGG | 0.587800 | 8.4:+60218165 | MS.gene92408:CDS |
| CGATTGGAATCTGAGATCAA+AGG | 0.597023 | 8.4:+60217993 | MS.gene92408:CDS |
| ATCATTGAAGCATCGGATGG+TGG | 0.601308 | 8.4:-60218992 | None:intergenic |
| CCGTTGGATACTTGAACCTG+CGG | 0.614913 | 8.4:+60218125 | MS.gene92408:CDS |
| AGCTCTGCTCACAACCACAC+GGG | 0.620972 | 8.4:-60219338 | None:intergenic |
| GCTCTAAGAAAGGCTTTCGA+AGG | 0.621766 | 8.4:+60217641 | MS.gene92408:CDS |
| GTTGAAAGTTGCAATCAGCT+GGG | 0.623575 | 8.4:-60218727 | None:intergenic |
| TGCCTGGCGAAGATGGCCGG+AGG | 0.628303 | 8.4:-60218310 | None:intergenic |
| CACATTCAAGAGCTCTTCGG+GGG | 0.637352 | 8.4:-60218229 | None:intergenic |
| GTGCTTGTAGCGTTTGACGT+AGG | 0.638713 | 8.4:-60218259 | None:intergenic |
| ATGATCATTGAAGCATCGGA+TGG | 0.640360 | 8.4:-60218995 | None:intergenic |
| GGTGCGAGATGCAATCAAGA+AGG | 0.643809 | 8.4:+60219291 | MS.gene92408:CDS |
| CTTTCCCCAAGAGAGTGAGA+AGG | 0.653124 | 8.4:-60219462 | None:intergenic |
| TCACATTCAAGAGCTCTTCG+GGG | 0.660847 | 8.4:-60218230 | None:intergenic |
| CAAGAAGGTTGGAACCGATG+AGG | 0.660964 | 8.4:+60219306 | MS.gene92408:CDS |
| TACCATGAGTCTCTCTATAG+CGG | 0.662344 | 8.4:-60218749 | None:intergenic |
| CCGCAGGTTCAAGTATCCAA+CGG | 0.670302 | 8.4:-60218125 | None:intergenic |
| AACCGCTATAGAGAGACTCA+TGG | 0.679537 | 8.4:+60218747 | MS.gene92408:CDS |
| TGTGGCAAAGGAAACTTCAG+GGG | 0.706591 | 8.4:+60219426 | MS.gene92408:CDS |
| TGAGGATGCGCTCACCCGTG+TGG | 0.717868 | 8.4:+60219324 | MS.gene92408:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTACATGTATAAAAATT+AGG | + | chr8.4:60218483-60218502 | MS.gene92408:intron | 15.0% |
| !! | TTATGTTGTATTAAAATTGA+TGG | + | chr8.4:60217840-60217859 | MS.gene92408:intron | 15.0% |
| !! | AATATGGTACTAAATCAATA+TGG | - | chr8.4:60218032-60218051 | None:intergenic | 20.0% |
| !! | AGATTAGACTGAAATTAAAA+TGG | - | chr8.4:60217764-60217783 | None:intergenic | 20.0% |
| !! | TTATGAAGGAATTTATAATG+AGG | + | chr8.4:60217959-60217978 | MS.gene92408:CDS | 20.0% |
| ! | AAAACTGTGATAACAATACT+TGG | + | chr8.4:60217897-60217916 | MS.gene92408:CDS | 25.0% |
| ! | AAAGCTTCTGTAAAGATTAA+AGG | - | chr8.4:60218933-60218952 | None:intergenic | 25.0% |
| ! | AAGCTTCTGTAAAGATTAAA+GGG | - | chr8.4:60218932-60218951 | None:intergenic | 25.0% |
| ! | AGATATAATCTATAGGACTA+TGG | - | chr8.4:60217703-60217722 | None:intergenic | 25.0% |
| ! | CAAAAATTACAATGTCATTG+TGG | + | chr8.4:60218188-60218207 | MS.gene92408:CDS | 25.0% |
| ! | GGTCTATAAACAAGAAAAAA+GGG | - | chr8.4:60217677-60217696 | None:intergenic | 25.0% |
| ! | GTCTATAAACAAGAAAAAAG+GGG | - | chr8.4:60217676-60217695 | None:intergenic | 25.0% |
| ! | GTTGTACATTGAAAACAAAT+CGG | + | chr8.4:60219094-60219113 | MS.gene92408:intron | 25.0% |
| ! | TCATGTTAAGTACTATGAAA+AGG | + | chr8.4:60219014-60219033 | MS.gene92408:CDS | 25.0% |
| ! | TGATGACAGATATAATCTAT+AGG | - | chr8.4:60217710-60217729 | None:intergenic | 25.0% |
| ! | TGGTCTATAAACAAGAAAAA+AGG | - | chr8.4:60217678-60217697 | None:intergenic | 25.0% |
| ! | TTTATCATATACCTTAGTGA+TGG | - | chr8.4:60218778-60218797 | None:intergenic | 25.0% |
| !! | CTAGCAAAACATTTTATGAA+TGG | - | chr8.4:60219122-60219141 | None:intergenic | 25.0% |
| !! | TTAATCTTTACAGAAGCTTT+TGG | + | chr8.4:60218933-60218952 | MS.gene92408:intron | 25.0% |
| !!! | AGATCATGGTTTTAAAATTG+CGG | + | chr8.4:60218446-60218465 | MS.gene92408:intron | 25.0% |
| !!! | ATGATTCATTTTTGTAGGAT+GGG | + | chr8.4:60217863-60217882 | MS.gene92408:intron | 25.0% |
| !!! | TTATTGTTTTGAGTTGACAA+GGG | - | chr8.4:60218857-60218876 | None:intergenic | 25.0% |
| !!! | TTTATTGTTTTGAGTTGACA+AGG | - | chr8.4:60218858-60218877 | None:intergenic | 25.0% |
| ACCACAAAATCAATAAACCA+TGG | - | chr8.4:60218538-60218557 | None:intergenic | 30.0% | |
| CAAAAAGCAATATTAGACCA+TGG | + | chr8.4:60218359-60218378 | MS.gene92408:intron | 30.0% | |
| CAAATCAGAAAAGCTTATGA+AGG | + | chr8.4:60217945-60217964 | MS.gene92408:CDS | 30.0% | |
| CTAATAGAACATCGACAATA+TGG | - | chr8.4:60218048-60218067 | None:intergenic | 30.0% | |
| GTATGAGAAACATTAGATCA+TGG | + | chr8.4:60218432-60218451 | MS.gene92408:intron | 30.0% | |
| TAACATGATCATTGAAGCAT+CGG | - | chr8.4:60219002-60219021 | None:intergenic | 30.0% | |
| TGATGAGATCAATCCAAAAT+TGG | + | chr8.4:60218611-60218630 | MS.gene92408:CDS | 30.0% | |
| TGTGATATTTCTTGAAACCA+TGG | + | chr8.4:60218518-60218537 | MS.gene92408:intron | 30.0% | |
| ! | ACATTTTCTGATCATATCGT+AGG | + | chr8.4:60219267-60219286 | MS.gene92408:intron | 30.0% |
| ! | CTTTTTGTTAGAAGAGTTGA+TGG | - | chr8.4:60218346-60218365 | None:intergenic | 30.0% |
| !! | ATAGTTCTGATTTGTTGACA+TGG | - | chr8.4:60219189-60219208 | None:intergenic | 30.0% |
| !! | GATGATTCATTTTTGTAGGA+TGG | + | chr8.4:60217862-60217881 | MS.gene92408:intron | 30.0% |
| !! | GATGGATGATTCATTTTTGT+AGG | + | chr8.4:60217858-60217877 | MS.gene92408:intron | 30.0% |
| !! | TGATTCATTTTTGTAGGATG+GGG | + | chr8.4:60217864-60217883 | MS.gene92408:intron | 30.0% |
| !! | TTAGAAGAGTTGATGGAAAA+AGG | - | chr8.4:60218339-60218358 | None:intergenic | 30.0% |
| !!! | ACCATGGTTTATTGATTTTG+TGG | + | chr8.4:60218534-60218553 | MS.gene92408:intron | 30.0% |
| ATCATATACCTTAGTGATGG+AGG | - | chr8.4:60218775-60218794 | None:intergenic | 35.0% | |
| TAATCTATAGGACTATGGCA+TGG | - | chr8.4:60217698-60217717 | None:intergenic | 35.0% | |
| TGAGGATCTTATCAAACGAT+TGG | + | chr8.4:60217977-60217996 | MS.gene92408:CDS | 35.0% | |
| ! | AAACATCTGAGATGACTTTC+AGG | - | chr8.4:60219372-60219391 | None:intergenic | 35.0% |
| ! | AGGATCTGATGATTTTCAGA+AGG | + | chr8.4:60218960-60218979 | MS.gene92408:CDS | 35.0% |
| ! | TTACAGAAGCTTTTGGATGA+AGG | + | chr8.4:60218940-60218959 | MS.gene92408:intron | 35.0% |
| ! | TTTTCTGATCATATCGTAGG+TGG | + | chr8.4:60219270-60219289 | MS.gene92408:intron | 35.0% |
| !! | TTTTCGAGCAGCTTTTAGTA+GGG | + | chr8.4:60218562-60218581 | MS.gene92408:intron | 35.0% |
| !!! | TGATCGCGATTTTAAAACCA+TGG | - | chr8.4:60218379-60218398 | None:intergenic | 35.0% |
| !!! | TTTTTCGAGCAGCTTTTAGT+AGG | + | chr8.4:60218561-60218580 | MS.gene92408:intron | 35.0% |
| AAATTGGCACAAACTGAAGC+TGG | + | chr8.4:60218627-60218646 | MS.gene92408:CDS | 40.0% | |
| AAGTTCCTTCTCACTCTCTT+GGG | + | chr8.4:60219457-60219476 | MS.gene92408:CDS | 40.0% | |
| AGAGCTTCAGCATCTTCATT+GGG | - | chr8.4:60217626-60217645 | None:intergenic | 40.0% | |
| AGATCCTTATGGCTTCTTCA+TGG | - | chr8.4:60218689-60218708 | None:intergenic | 40.0% | |
| CCATAAGGATCTTGACTACA+AGG | + | chr8.4:60218697-60218716 | MS.gene92408:CDS | 40.0% | |
| CCTTGTAGTCAAGATCCTTA+TGG | - | chr8.4:60218700-60218719 | None:intergenic | 40.0% | |
| GAGTCAGTGAAAGAGAAGAA+AGG | + | chr8.4:60218660-60218679 | MS.gene92408:CDS | 40.0% | |
| GCAAATGTTGCTATCAAGAG+TGG | + | chr8.4:60218165-60218184 | MS.gene92408:CDS | 40.0% | |
| GTGACTGCATTTAGGTATGT+TGG | + | chr8.4:60218588-60218607 | MS.gene92408:CDS | 40.0% | |
| GTTGAAAGTTGCAATCAGCT+GGG | - | chr8.4:60218730-60218749 | None:intergenic | 40.0% | |
| TACCATGAGTCTCTCTATAG+CGG | - | chr8.4:60218752-60218771 | None:intergenic | 40.0% | |
| TAGAGCTTCAGCATCTTCAT+TGG | - | chr8.4:60217627-60217646 | None:intergenic | 40.0% | |
| TCTCACATTCAAGAGCTCTT+CGG | - | chr8.4:60218235-60218254 | None:intergenic | 40.0% | |
| TGAGATCAAAGGAGACTTTG+AGG | + | chr8.4:60218004-60218023 | MS.gene92408:CDS | 40.0% | |
| ! | CGATTGGAATCTGAGATCAA+AGG | + | chr8.4:60217993-60218012 | MS.gene92408:CDS | 40.0% |
| ! | GCTTCAGTTTGTGCCAATTT+TGG | - | chr8.4:60218627-60218646 | None:intergenic | 40.0% |
| !! | AGATGCTGAAGCTCTAAGAA+AGG | + | chr8.4:60217631-60217650 | MS.gene92408:CDS | 40.0% |
| !! | ATGATCATTGAAGCATCGGA+TGG | - | chr8.4:60218998-60219017 | None:intergenic | 40.0% |
| AACAGAAAGCTGTGTACCGT+TGG | + | chr8.4:60218109-60218128 | MS.gene92408:intron | 45.0% | |
| AACCGCTATAGAGAGACTCA+TGG | + | chr8.4:60218747-60218766 | MS.gene92408:CDS | 45.0% | |
| AATGGTTGCTGGGAGCAATA+AGG | - | chr8.4:60217601-60217620 | None:intergenic | 45.0% | |
| AGTTCCTTCTCACTCTCTTG+GGG | + | chr8.4:60219458-60219477 | MS.gene92408:CDS | 45.0% | |
| ATGGTTGCTGGGAGCAATAA+GGG | - | chr8.4:60217600-60217619 | None:intergenic | 45.0% | |
| CAGCATCTTCATTGGGAGAA+TGG | - | chr8.4:60217619-60217638 | None:intergenic | 45.0% | |
| CGAGATGCAATCAAGAAGGT+TGG | + | chr8.4:60219295-60219314 | MS.gene92408:CDS | 45.0% | |
| CTCACATTCAAGAGCTCTTC+GGG | - | chr8.4:60218234-60218253 | None:intergenic | 45.0% | |
| CTGTGGCAAAGGAAACTTCA+GGG | + | chr8.4:60219425-60219444 | MS.gene92408:CDS | 45.0% | |
| GAAGCCATGAAGAAGCCATA+AGG | + | chr8.4:60218682-60218701 | MS.gene92408:CDS | 45.0% | |
| GAAGTTCCTTCTCACTCTCT+TGG | + | chr8.4:60219456-60219475 | MS.gene92408:CDS | 45.0% | |
| GAGTTACCACCTATGAAGCA+CGG | + | chr8.4:60218800-60218819 | MS.gene92408:intron | 45.0% | |
| GCACTCCTTGGAAGAAGATT+TGG | + | chr8.4:60218278-60218297 | MS.gene92408:CDS | 45.0% | |
| GGTTGAAAGTTGCAATCAGC+TGG | - | chr8.4:60218731-60218750 | None:intergenic | 45.0% | |
| TCACATTCAAGAGCTCTTCG+GGG | - | chr8.4:60218233-60218252 | None:intergenic | 45.0% | |
| TCATGGTACCTCCATCACTA+AGG | + | chr8.4:60218764-60218783 | MS.gene92408:CDS | 45.0% | |
| TCATTGGGAGAATGGTTGCT+GGG | - | chr8.4:60217611-60217630 | None:intergenic | 45.0% | |
| TGATGGAAAAAGGACTTGCC+TGG | - | chr8.4:60218329-60218348 | None:intergenic | 45.0% | |
| TGTGGCAAAGGAAACTTCAG+GGG | + | chr8.4:60219426-60219445 | MS.gene92408:CDS | 45.0% | |
| TTCATTGGGAGAATGGTTGC+TGG | - | chr8.4:60217612-60217631 | None:intergenic | 45.0% | |
| ! | TAGGGCTAGTGACTGCATTT+AGG | + | chr8.4:60218580-60218599 | MS.gene92408:CDS | 45.0% |
| !! | ATCATTGAAGCATCGGATGG+TGG | - | chr8.4:60218995-60219014 | None:intergenic | 45.0% |
| !! | GCTCTAAGAAAGGCTTTCGA+AGG | + | chr8.4:60217641-60217660 | MS.gene92408:CDS | 45.0% |
| !! | AAAATTATGATATTATAATT+TGG | + | chr8.4:60218891-60218910 | MS.gene92408:intron | 5.0% |
| AAAACAGCATCACGTTCCGC+AGG | - | chr8.4:60218144-60218163 | None:intergenic | 50.0% | |
| AACCGCAAACGAAGCATGAG+CGG | - | chr8.4:60218406-60218425 | None:intergenic | 50.0% | |
| CAAACGCTACAAGCACTCCT+TGG | + | chr8.4:60218266-60218285 | MS.gene92408:CDS | 50.0% | |
| CAAGAAGGTTGGAACCGATG+AGG | + | chr8.4:60219306-60219325 | MS.gene92408:CDS | 50.0% | |
| CACATTCAAGAGCTCTTCGG+GGG | - | chr8.4:60218232-60218251 | None:intergenic | 50.0% | |
| CCGCAGGTTCAAGTATCCAA+CGG | - | chr8.4:60218128-60218147 | None:intergenic | 50.0% | |
| CCGTTGGATACTTGAACCTG+CGG | + | chr8.4:60218125-60218144 | MS.gene92408:CDS | 50.0% | |
| CGCGACACGCTTAATACTAG+AGG | - | chr8.4:60218829-60218848 | None:intergenic | 50.0% | |
| CTTTCCCCAAGAGAGTGAGA+AGG | - | chr8.4:60219465-60219484 | None:intergenic | 50.0% | |
| GCTGTGGCAAAGGAAACTTC+AGG | + | chr8.4:60219424-60219443 | MS.gene92408:CDS | 50.0% | |
| GGCAGCCAAATCTTCTTCCA+AGG | - | chr8.4:60218286-60218305 | None:intergenic | 50.0% | |
| GGTGCGAGATGCAATCAAGA+AGG | + | chr8.4:60219291-60219310 | MS.gene92408:CDS | 50.0% | |
| GTGCTTGTAGCGTTTGACGT+AGG | - | chr8.4:60218262-60218281 | None:intergenic | 50.0% | |
| TACCGCTCATGCTTCGTTTG+CGG | + | chr8.4:60218401-60218420 | MS.gene92408:intron | 50.0% | |
| TCTTGAGCATGCTGTGGCAA+AGG | + | chr8.4:60219414-60219433 | MS.gene92408:CDS | 50.0% | |
| TGCCACAGCATGCTCAAGAA+GGG | - | chr8.4:60219413-60219432 | None:intergenic | 50.0% | |
| TTGCCACAGCATGCTCAAGA+AGG | - | chr8.4:60219414-60219433 | None:intergenic | 50.0% | |
| !! | TAGAGGTGTCCGTGCTTCAT+AGG | - | chr8.4:60218812-60218831 | None:intergenic | 50.0% |
| !! | TGCGGAACGTGATGCTGTTT+TGG | + | chr8.4:60218143-60218162 | MS.gene92408:CDS | 50.0% |
| AAGGACTTGCCTGGCGAAGA+TGG | - | chr8.4:60218320-60218339 | None:intergenic | 55.0% | |
| AGCTCTGCTCACAACCACAC+GGG | - | chr8.4:60219341-60219360 | None:intergenic | 55.0% | |
| AGGTGTCCGTGCTTCATAGG+TGG | - | chr8.4:60218809-60218828 | None:intergenic | 55.0% | |
| GAGCTCTGCTCACAACCACA+CGG | - | chr8.4:60219342-60219361 | None:intergenic | 55.0% | |
| ACGGGTGAGCGCATCCTCAT+CGG | - | chr8.4:60219323-60219342 | None:intergenic | 60.0% | |
| ACTTGCCTGGCGAAGATGGC+CGG | - | chr8.4:60218316-60218335 | None:intergenic | 60.0% | |
| CGCCCTTCTTGAGCATGCTG+TGG | + | chr8.4:60219408-60219427 | MS.gene92408:CDS | 60.0% | |
| GATTTGGCTGCCCACACCTC+CGG | + | chr8.4:60218294-60218313 | MS.gene92408:CDS | 60.0% | |
| TGAGGATGCGCTCACCCGTG+TGG | + | chr8.4:60219324-60219343 | MS.gene92408:CDS | 65.0% | |
| ! | GCGAAGATGGCCGGAGGTGT+GGG | - | chr8.4:60218307-60218326 | None:intergenic | 65.0% |
| CACCTCCGGCCATCTTCGCC+AGG | + | chr8.4:60218308-60218327 | MS.gene92408:CDS | 70.0% | |
| GGCGAAGATGGCCGGAGGTG+TGG | - | chr8.4:60218308-60218327 | None:intergenic | 70.0% | |
| TGCCTGGCGAAGATGGCCGG+AGG | - | chr8.4:60218313-60218332 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 60217590 | 60219492 | 60217590 | ID=MS.gene92408 |
| chr8.4 | mRNA | 60217590 | 60219492 | 60217590 | ID=MS.gene92408.t1;Parent=MS.gene92408 |
| chr8.4 | exon | 60217590 | 60217662 | 60217590 | ID=MS.gene92408.t1.exon1;Parent=MS.gene92408.t1 |
| chr8.4 | CDS | 60217590 | 60217662 | 60217590 | ID=cds.MS.gene92408.t1;Parent=MS.gene92408.t1 |
| chr8.4 | exon | 60217880 | 60218025 | 60217880 | ID=MS.gene92408.t1.exon2;Parent=MS.gene92408.t1 |
| chr8.4 | CDS | 60217880 | 60218025 | 60217880 | ID=cds.MS.gene92408.t1;Parent=MS.gene92408.t1 |
| chr8.4 | exon | 60218114 | 60218329 | 60218114 | ID=MS.gene92408.t1.exon3;Parent=MS.gene92408.t1 |
| chr8.4 | CDS | 60218114 | 60218329 | 60218114 | ID=cds.MS.gene92408.t1;Parent=MS.gene92408.t1 |
| chr8.4 | exon | 60218573 | 60218785 | 60218573 | ID=MS.gene92408.t1.exon4;Parent=MS.gene92408.t1 |
| chr8.4 | CDS | 60218573 | 60218785 | 60218573 | ID=cds.MS.gene92408.t1;Parent=MS.gene92408.t1 |
| chr8.4 | exon | 60218946 | 60219035 | 60218946 | ID=MS.gene92408.t1.exon5;Parent=MS.gene92408.t1 |
| chr8.4 | CDS | 60218946 | 60219035 | 60218946 | ID=cds.MS.gene92408.t1;Parent=MS.gene92408.t1 |
| chr8.4 | exon | 60219289 | 60219492 | 60219289 | ID=MS.gene92408.t1.exon6;Parent=MS.gene92408.t1 |
| chr8.4 | CDS | 60219289 | 60219492 | 60219289 | ID=cds.MS.gene92408.t1;Parent=MS.gene92408.t1 |
| Gene Sequence |
| Protein sequence |
