Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93205.t1 | XP_013447054.1 | 98 | 456 | 9 | 0 | 1 | 456 | 1 | 456 | 2.20E-256 | 894.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93205.t1 | Q9FN67 | 62.9 | 450 | 152 | 6 | 16 | 454 | 9 | 454 | 9.8e-157 | 554.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93205.t1 | A0A072TV73 | 98.0 | 456 | 9 | 0 | 1 | 456 | 1 | 456 | 1.6e-256 | 894.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052083 | MS.gene93205 | 0.880282 | 6.24E-70 | -1.69E-46 |
| MS.gene053625 | MS.gene93205 | 0.806127 | 9.57E-50 | -1.69E-46 |
| MS.gene059691 | MS.gene93205 | 0.807761 | 4.32E-50 | -1.69E-46 |
| MS.gene059694 | MS.gene93205 | 0.812226 | 4.72E-51 | -1.69E-46 |
| MS.gene059697 | MS.gene93205 | 0.811133 | 8.15E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93205.t1 | MTR_8g098485 | 98.026 | 456 | 9 | 0 | 1 | 456 | 1 | 456 | 0.0 | 920 |
| MS.gene93205.t1 | MTR_7g088170 | 30.901 | 466 | 280 | 13 | 17 | 452 | 16 | 469 | 3.87e-65 | 217 |
| MS.gene93205.t1 | MTR_4g130970 | 23.222 | 478 | 276 | 18 | 20 | 453 | 8 | 438 | 6.75e-20 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93205.t1 | AT5G41330 | 62.889 | 450 | 152 | 6 | 16 | 454 | 9 | 454 | 0.0 | 567 |
| MS.gene93205.t1 | AT5G41330 | 62.889 | 450 | 152 | 6 | 16 | 454 | 9 | 454 | 0.0 | 567 |
| MS.gene93205.t1 | AT3G09030 | 32.222 | 450 | 282 | 12 | 20 | 453 | 10 | 452 | 2.22e-64 | 214 |
| MS.gene93205.t1 | AT4G30940 | 28.662 | 314 | 190 | 12 | 20 | 316 | 8 | 304 | 1.58e-19 | 90.9 |
| MS.gene93205.t1 | AT2G24240 | 25.383 | 457 | 287 | 18 | 20 | 451 | 8 | 435 | 3.23e-19 | 90.1 |
Find 115 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGGTCCTTCTGGTGTTTC+TGG | 0.144577 | 4.2:+6267984 | MS.gene93205:CDS |
| AGGAGAGTCTCTTCCGTTTA+AGG | 0.149332 | 4.2:-6267487 | None:intergenic |
| CATAATCTGTTGATGGCTTC+TGG | 0.224547 | 4.2:+6267954 | MS.gene93205:CDS |
| CGGGTTACAGATTCTTGATT+TGG | 0.229474 | 4.2:+6267683 | MS.gene93205:CDS |
| GCGTTAGAATTGTTGATTTC+CGG | 0.235110 | 4.2:-6267590 | None:intergenic |
| AACAATTCTAACGCACTTTA+CGG | 0.238094 | 4.2:+6267599 | MS.gene93205:CDS |
| AGGAGGAGAGAGAAAATTTC+AGG | 0.240586 | 4.2:-6267300 | None:intergenic |
| TTCGCTCTGGCAACGTTGTT+TGG | 0.244172 | 4.2:+6268027 | MS.gene93205:CDS |
| ACGTGAAGGATACATTAAAT+TGG | 0.258798 | 4.2:+6267715 | MS.gene93205:CDS |
| TTTCTGGTAATGTTAGGTTA+TGG | 0.263715 | 4.2:+6268000 | MS.gene93205:CDS |
| TTCAAAATGCCACCCTTTGC+AGG | 0.268500 | 4.2:+6267108 | None:intergenic |
| GATGGGGAGGGTGCAAGATA+TGG | 0.270075 | 4.2:+6268355 | MS.gene93205:CDS |
| TGTAGCAGTTTCTGATTCTT+TGG | 0.273093 | 4.2:+6268082 | MS.gene93205:CDS |
| ATCCACTGCAGTTTCGTTGC+TGG | 0.283895 | 4.2:-6267924 | None:intergenic |
| CTGGTGTTTCTGGTAATGTT+AGG | 0.286245 | 4.2:+6267994 | MS.gene93205:CDS |
| TAATGGGTTCTTCTAATAAC+AGG | 0.298676 | 4.2:+6268315 | MS.gene93205:CDS |
| TTTAAAGTTGGTGTGAATTC+TGG | 0.298812 | 4.2:+6268113 | MS.gene93205:CDS |
| GGGTCCCACAGTGGTCCTTC+TGG | 0.309924 | 4.2:+6267975 | MS.gene93205:CDS |
| AAGATCACAAATTTGGCATT+TGG | 0.317695 | 4.2:+6268386 | MS.gene93205:CDS |
| TTCTGGTAATGTTAGGTTAT+GGG | 0.332159 | 4.2:+6268001 | MS.gene93205:CDS |
| AAGTTTGGCAGAGTTCTTCT+AGG | 0.335393 | 4.2:+6268453 | MS.gene93205:CDS |
| ATCATAAACAACAATAGAAT+TGG | 0.345014 | 4.2:-6267829 | None:intergenic |
| AGGTGCTAAGATCACAAATT+TGG | 0.365344 | 4.2:+6268379 | MS.gene93205:CDS |
| GGCTTTGGAAGGAAGATTAC+CGG | 0.366750 | 4.2:-6267337 | None:intergenic |
| TCGCTCTGGCAACGTTGTTT+GGG | 0.369820 | 4.2:+6268028 | MS.gene93205:CDS |
| GTCTTGAAGATCAAAGGATT+TGG | 0.378770 | 4.2:-6267358 | None:intergenic |
| TTGTGAGCAATCTCCGTAAC+AGG | 0.383544 | 4.2:-6267867 | None:intergenic |
| TGGGAAAACGTAACGAAATC+TGG | 0.387225 | 4.2:+6267735 | MS.gene93205:CDS |
| ATAATCTGTTGATGGCTTCT+GGG | 0.388853 | 4.2:+6267955 | MS.gene93205:CDS |
| CGTGAAGGATACATTAAATT+GGG | 0.393397 | 4.2:+6267716 | MS.gene93205:CDS |
| TTGTGAGATTGTTGAGAAGA+AGG | 0.396912 | 4.2:-6267241 | None:intergenic |
| TCACTTCAATTACCCTTAAA+CGG | 0.399134 | 4.2:+6267474 | MS.gene93205:CDS |
| AAGATCAAAGGATTTGGCTT+TGG | 0.400270 | 4.2:-6267352 | None:intergenic |
| ATTGCTCACAATGAAATCTA+TGG | 0.400951 | 4.2:+6267879 | MS.gene93205:CDS |
| GGAGAGTCTCTTCCGTTTAA+GGG | 0.401423 | 4.2:-6267486 | None:intergenic |
| CAGATTCTTGATTTGGAAAA+CGG | 0.403375 | 4.2:+6267690 | MS.gene93205:CDS |
| CCCTTTGCAGGTTCTCATCC+CGG | 0.417766 | 4.2:+6267120 | MS.gene93205:CDS |
| GCTATGGTCAGAGATTATAA+TGG | 0.421356 | 4.2:+6268298 | MS.gene93205:CDS |
| TGAAAGTCATAATCTGTTGA+TGG | 0.423697 | 4.2:+6267947 | MS.gene93205:CDS |
| GCAAGATTACAACCTTTGAT+TGG | 0.424151 | 4.2:+6267559 | MS.gene93205:CDS |
| ATTTGCAATGTGTTGAAGTT+TGG | 0.431202 | 4.2:+6268438 | MS.gene93205:CDS |
| GCATAGTTTGAGACCTGTTA+CGG | 0.441604 | 4.2:+6267854 | MS.gene93205:CDS |
| TAGGATGTTCTTAACTAGAA+AGG | 0.445860 | 4.2:+6268415 | MS.gene93205:CDS |
| GCCGGAGCTAATGATTTCTC+CGG | 0.449877 | 4.2:+6267663 | MS.gene93205:CDS |
| ATGGGGAGGGTGCAAGATAT+GGG | 0.456498 | 4.2:+6268356 | MS.gene93205:CDS |
| AGAATTTGGATTCAATGATA+AGG | 0.464890 | 4.2:-6267380 | None:intergenic |
| CTATGGTCAGAGATTATAAT+GGG | 0.475345 | 4.2:+6268299 | MS.gene93205:CDS |
| TGGAATCGCTGAATCGATAT+CGG | 0.479074 | 4.2:-6267904 | None:intergenic |
| AAACAAACCCTAACCTCAGC+TGG | 0.481824 | 4.2:+6267210 | MS.gene93205:CDS |
| ATCATTGAATCCAAATTCTA+CGG | 0.483688 | 4.2:+6267384 | MS.gene93205:CDS |
| GGTTCAACCGTTCAAGCGAT+TGG | 0.484879 | 4.2:+6267756 | MS.gene93205:CDS |
| TTGTTTAGGTGATAAGAGAA+AGG | 0.487551 | 4.2:+6268190 | MS.gene93205:CDS |
| TCGCCGTCGTTAGCCGCCGC+CGG | 0.489018 | 4.2:+6267645 | MS.gene93205:CDS |
| ATCACAAATTTGGCATTTGG+AGG | 0.491735 | 4.2:+6268389 | MS.gene93205:CDS |
| TTGGATGCTATGTTTAAAGT+TGG | 0.491875 | 4.2:+6268101 | MS.gene93205:CDS |
| AAGCTAACAAACATGTTCTC+AGG | 0.493602 | 4.2:-6267786 | None:intergenic |
| CAAGAAGAATTTGATGGGGA+GGG | 0.495473 | 4.2:+6268343 | MS.gene93205:CDS |
| TTGAAAGGTTCAAATTGAGA+AGG | 0.496364 | 4.2:-6267441 | None:intergenic |
| AGGTTATGGGATGTTCGCTC+TGG | 0.496629 | 4.2:+6268014 | MS.gene93205:CDS |
| CCTTTGATTGGTCACTTCGC+CGG | 0.499137 | 4.2:+6267571 | MS.gene93205:CDS |
| TGAAAGGTTCAAATTGAGAA+GGG | 0.502836 | 4.2:-6267440 | None:intergenic |
| GGGGTGGTTGCAACGGTGGA+AGG | 0.505309 | 4.2:-6267507 | None:intergenic |
| CTCCTCTCTCTCCTCCGCAC+CGG | 0.507223 | 4.2:+6267318 | MS.gene93205:CDS |
| ATTTGGCATTTGGAGGAAGT+AGG | 0.517181 | 4.2:+6268396 | MS.gene93205:CDS |
| TCAAAGGATTTGGCTTTGGA+AGG | 0.521892 | 4.2:-6267348 | None:intergenic |
| TACCGGTGCGGAGGAGAGAG+AGG | 0.527787 | 4.2:-6267320 | None:intergenic |
| ACCGTAAGGGGTGGTTGCAA+CGG | 0.528739 | 4.2:-6267514 | None:intergenic |
| CCCGGAGAAATCATTAGCTC+CGG | 0.530387 | 4.2:-6267664 | None:intergenic |
| GGAGGAGAGAGAAAATTTCA+GGG | 0.531374 | 4.2:-6267299 | None:intergenic |
| GAAAGGTGTGTAGGGTGAAG+AGG | 0.538108 | 4.2:-6267265 | None:intergenic |
| ACCGTTGCAACCACCCCTTA+CGG | 0.539975 | 4.2:+6267513 | MS.gene93205:CDS |
| GATAAGGTCTTGAAGATCAA+AGG | 0.542021 | 4.2:-6267364 | None:intergenic |
| TTGCACTAAGGGTGGTGATG+TGG | 0.542476 | 4.2:+6268274 | MS.gene93205:CDS |
| TCAAGAAGAATTTGATGGGG+AGG | 0.543104 | 4.2:+6268342 | MS.gene93205:CDS |
| TGCTGCCGTGTGCGACGTGG+AGG | 0.546307 | 4.2:-6267539 | None:intergenic |
| CCGGAGCTAATGATTTCTCC+GGG | 0.550287 | 4.2:+6267664 | MS.gene93205:CDS |
| GTCTGATCTGAAAACACCAC+CGG | 0.555052 | 4.2:-6267139 | None:intergenic |
| GACGTGGAGGGAACCGTAAG+GGG | 0.556034 | 4.2:-6267526 | None:intergenic |
| TCTGTCGATGAAAGGTGTGT+AGG | 0.558071 | 4.2:-6267274 | None:intergenic |
| AGTTTGGCAGAGTTCTTCTA+GGG | 0.559490 | 4.2:+6268454 | MS.gene93205:CDS |
| CGACGTGGAGGGAACCGTAA+GGG | 0.559572 | 4.2:-6267527 | None:intergenic |
| CTGTCGATGAAAGGTGTGTA+GGG | 0.561965 | 4.2:-6267273 | None:intergenic |
| CCGGCGAAGTGACCAATCAA+AGG | 0.568312 | 4.2:-6267571 | None:intergenic |
| GCGACGTGGAGGGAACCGTA+AGG | 0.579972 | 4.2:-6267528 | None:intergenic |
| TCAGGGTCTCTGTCGATGAA+AGG | 0.581587 | 4.2:-6267282 | None:intergenic |
| GAAATCATTAGCTCCGGCGG+CGG | 0.582033 | 4.2:-6267658 | None:intergenic |
| GGTTGCAAAATTGAAACACA+AGG | 0.582683 | 4.2:+6268239 | MS.gene93205:CDS |
| TGAAGAACCAATCGCTTGAA+CGG | 0.585234 | 4.2:-6267763 | None:intergenic |
| CAAATCAAGAATCTGTAACC+CGG | 0.585490 | 4.2:-6267682 | None:intergenic |
| AACATAGTCACAATCGACGT+TGG | 0.585850 | 4.2:+6267165 | MS.gene93205:CDS |
| GCTCCGGCGGCGGCTAACGA+CGG | 0.587441 | 4.2:-6267648 | None:intergenic |
| CCGGGATGAGAACCTGCAAA+GGG | 0.593697 | 4.2:-6267120 | None:intergenic |
| TTTGGAAAACGGTTACGTGA+AGG | 0.595270 | 4.2:+6267701 | MS.gene93205:CDS |
| GGTTCCCTCCACGTCGCACA+CGG | 0.603417 | 4.2:+6267534 | MS.gene93205:CDS |
| CGGTGCGGAGGAGAGAGAGG+AGG | 0.605383 | 4.2:-6267317 | None:intergenic |
| ATAGTCACAATCGACGTTGG+AGG | 0.605832 | 4.2:+6267168 | MS.gene93205:CDS |
| GTTGCAAAATTGAAACACAA+GGG | 0.608708 | 4.2:+6268240 | MS.gene93205:CDS |
| ACCGGGATGAGAACCTGCAA+AGG | 0.610342 | 4.2:-6267121 | None:intergenic |
| GCTGCCGTGTGCGACGTGGA+GGG | 0.616967 | 4.2:-6267538 | None:intergenic |
| GTAAGGGGTGGTTGCAACGG+TGG | 0.625552 | 4.2:-6267511 | None:intergenic |
| TTCCAGCAACGAAACTGCAG+TGG | 0.625740 | 4.2:+6267922 | MS.gene93205:CDS |
| AACACCAGAAGGACCACTGT+GGG | 0.627063 | 4.2:-6267979 | None:intergenic |
| AAGGAAGATTACCGGTGCGG+AGG | 0.628049 | 4.2:-6267329 | None:intergenic |
| AGGGTGGTGATGTGGAGCTA+TGG | 0.628784 | 4.2:+6268282 | MS.gene93205:CDS |
| GGAGAAATCATTAGCTCCGG+CGG | 0.638372 | 4.2:-6267661 | None:intergenic |
| TCTTGCTGCCGTGTGCGACG+TGG | 0.646818 | 4.2:-6267542 | None:intergenic |
| ATGGCTTCTGGGTCCCACAG+TGG | 0.650573 | 4.2:+6267966 | MS.gene93205:CDS |
| GTGGAGGGAACCGTAAGGGG+TGG | 0.652569 | 4.2:-6267523 | None:intergenic |
| GGATGAGAACCTGCAAAGGG+TGG | 0.660246 | 4.2:-6267117 | None:intergenic |
| TGGAAGGAAGATTACCGGTG+CGG | 0.667763 | 4.2:-6267332 | None:intergenic |
| TTTGCAGGTTCTCATCCCGG+TGG | 0.693634 | 4.2:+6267123 | MS.gene93205:CDS |
| ACATTACCAGAAACACCAGA+AGG | 0.701677 | 4.2:-6267990 | None:intergenic |
| GGGAGGGTGCAAGATATGGG+AGG | 0.711495 | 4.2:+6268359 | MS.gene93205:CDS |
| TCTGATCTGAAAACACCACC+GGG | 0.715720 | 4.2:-6267138 | None:intergenic |
| AAACACCAGAAGGACCACTG+TGG | 0.737767 | 4.2:-6267980 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATAAACAACAATAGAAT+TGG | - | chr4.2:6267832-6267851 | None:intergenic | 20.0% |
| !!! | ATTTTCAAGAAGAATTTGAT+GGG | + | chr4.2:6268338-6268357 | MS.gene93205:CDS | 20.0% |
| ! | AGAATTTGGATTCAATGATA+AGG | - | chr4.2:6267383-6267402 | None:intergenic | 25.0% |
| ! | ATCATTGAATCCAAATTCTA+CGG | + | chr4.2:6267384-6267403 | MS.gene93205:CDS | 25.0% |
| !! | TTTTGAATGGGAAAAAAGAA+GGG | + | chr4.2:6268213-6268232 | MS.gene93205:CDS | 25.0% |
| !!! | AATCAAGTTTTTTGCACTAA+GGG | + | chr4.2:6268263-6268282 | MS.gene93205:CDS | 25.0% |
| !!! | ATAAGAGAAAGGTTTTGAAT+GGG | + | chr4.2:6268201-6268220 | MS.gene93205:CDS | 25.0% |
| !!! | GATTTTCAAGAAGAATTTGA+TGG | + | chr4.2:6268337-6268356 | MS.gene93205:CDS | 25.0% |
| !!! | GTTTTGTTGTTTGAAACAAT+TGG | - | chr4.2:6267194-6267213 | None:intergenic | 25.0% |
| !!! | TTTTCAAGAAGAATTTGATG+GGG | + | chr4.2:6268339-6268358 | MS.gene93205:CDS | 25.0% |
| AACAATTCTAACGCACTTTA+CGG | + | chr4.2:6267599-6267618 | MS.gene93205:CDS | 30.0% | |
| AAGATCACAAATTTGGCATT+TGG | + | chr4.2:6268386-6268405 | MS.gene93205:CDS | 30.0% | |
| ACGTGAAGGATACATTAAAT+TGG | + | chr4.2:6267715-6267734 | MS.gene93205:CDS | 30.0% | |
| ATTGCTCACAATGAAATCTA+TGG | + | chr4.2:6267879-6267898 | MS.gene93205:CDS | 30.0% | |
| ATTTGCAATGTGTTGAAGTT+TGG | + | chr4.2:6268438-6268457 | MS.gene93205:CDS | 30.0% | |
| CGTGAAGGATACATTAAATT+GGG | + | chr4.2:6267716-6267735 | MS.gene93205:CDS | 30.0% | |
| CTATGGTCAGAGATTATAAT+GGG | + | chr4.2:6268299-6268318 | MS.gene93205:CDS | 30.0% | |
| GTTGCAAAATTGAAACACAA+GGG | + | chr4.2:6268240-6268259 | MS.gene93205:CDS | 30.0% | |
| TAGGATGTTCTTAACTAGAA+AGG | + | chr4.2:6268415-6268434 | MS.gene93205:CDS | 30.0% | |
| TCACTTCAATTACCCTTAAA+CGG | + | chr4.2:6267474-6267493 | MS.gene93205:CDS | 30.0% | |
| TGAAAGGTTCAAATTGAGAA+GGG | - | chr4.2:6267443-6267462 | None:intergenic | 30.0% | |
| TGAAAGTCATAATCTGTTGA+TGG | + | chr4.2:6267947-6267966 | MS.gene93205:CDS | 30.0% | |
| TTGAAAGGTTCAAATTGAGA+AGG | - | chr4.2:6267444-6267463 | None:intergenic | 30.0% | |
| TTGTTTAGGTGATAAGAGAA+AGG | + | chr4.2:6268190-6268209 | MS.gene93205:CDS | 30.0% | |
| ! | AAAAATGCATGGGTTTGTTT+AGG | + | chr4.2:6268176-6268195 | MS.gene93205:CDS | 30.0% |
| ! | ATTGTTGAGAAGAAGGTTTT+TGG | - | chr4.2:6267237-6267256 | None:intergenic | 30.0% |
| ! | TTCTGGTAATGTTAGGTTAT+GGG | + | chr4.2:6268001-6268020 | MS.gene93205:CDS | 30.0% |
| ! | TTGGATGCTATGTTTAAAGT+TGG | + | chr4.2:6268101-6268120 | MS.gene93205:CDS | 30.0% |
| ! | TTTCTGGTAATGTTAGGTTA+TGG | + | chr4.2:6268000-6268019 | MS.gene93205:CDS | 30.0% |
| !! | CAGATTCTTGATTTGGAAAA+CGG | + | chr4.2:6267690-6267709 | MS.gene93205:CDS | 30.0% |
| !! | GTTTTGAATGGGAAAAAAGA+AGG | + | chr4.2:6268212-6268231 | MS.gene93205:CDS | 30.0% |
| !! | TAATGGGTTCTTCTAATAAC+AGG | + | chr4.2:6268315-6268334 | MS.gene93205:CDS | 30.0% |
| !! | TTTAAAGTTGGTGTGAATTC+TGG | + | chr4.2:6268113-6268132 | MS.gene93205:CDS | 30.0% |
| !!! | AGTGAGTTTTGAAGATTGAA+AGG | - | chr4.2:6267459-6267478 | None:intergenic | 30.0% |
| !!! | GAATCAAGTTTTTTGCACTA+AGG | + | chr4.2:6268262-6268281 | MS.gene93205:CDS | 30.0% |
| !!! | GATAAGAGAAAGGTTTTGAA+TGG | + | chr4.2:6268200-6268219 | MS.gene93205:CDS | 30.0% |
| AAGCTAACAAACATGTTCTC+AGG | - | chr4.2:6267789-6267808 | None:intergenic | 35.0% | |
| AATGGGAAAAAAGAAGGGTT+TGG | + | chr4.2:6268218-6268237 | MS.gene93205:CDS | 35.0% | |
| AGGTGCTAAGATCACAAATT+TGG | + | chr4.2:6268379-6268398 | MS.gene93205:CDS | 35.0% | |
| ATCACAAATTTGGCATTTGG+AGG | + | chr4.2:6268389-6268408 | MS.gene93205:CDS | 35.0% | |
| CAAATCAAGAATCTGTAACC+CGG | - | chr4.2:6267685-6267704 | None:intergenic | 35.0% | |
| GATAAGGTCTTGAAGATCAA+AGG | - | chr4.2:6267367-6267386 | None:intergenic | 35.0% | |
| GCAAGATTACAACCTTTGAT+TGG | + | chr4.2:6267559-6267578 | MS.gene93205:CDS | 35.0% | |
| GCTATGGTCAGAGATTATAA+TGG | + | chr4.2:6268298-6268317 | MS.gene93205:CDS | 35.0% | |
| GGTTGCAAAATTGAAACACA+AGG | + | chr4.2:6268239-6268258 | MS.gene93205:CDS | 35.0% | |
| GTCTTGAAGATCAAAGGATT+TGG | - | chr4.2:6267361-6267380 | None:intergenic | 35.0% | |
| TGTAGCAGTTTCTGATTCTT+TGG | + | chr4.2:6268082-6268101 | MS.gene93205:CDS | 35.0% | |
| TTGTGAGATTGTTGAGAAGA+AGG | - | chr4.2:6267244-6267263 | None:intergenic | 35.0% | |
| ! | AAGATCAAAGGATTTGGCTT+TGG | - | chr4.2:6267355-6267374 | None:intergenic | 35.0% |
| ! | ATTTTCGATGCCGTAGAATT+TGG | - | chr4.2:6267397-6267416 | None:intergenic | 35.0% |
| !! | ATAATCTGTTGATGGCTTCT+GGG | + | chr4.2:6267955-6267974 | MS.gene93205:CDS | 35.0% |
| !! | GAGTTCTGAGAAAAATGCAT+GGG | + | chr4.2:6268166-6268185 | MS.gene93205:CDS | 35.0% |
| !! | GCGTTAGAATTGTTGATTTC+CGG | - | chr4.2:6267593-6267612 | None:intergenic | 35.0% |
| !! | TGAGTTCTGAGAAAAATGCA+TGG | + | chr4.2:6268165-6268184 | MS.gene93205:CDS | 35.0% |
| !! | TTCTGGTGAAGCGTTTTATA+TGG | + | chr4.2:6268130-6268149 | MS.gene93205:CDS | 35.0% |
| AACATAGTCACAATCGACGT+TGG | + | chr4.2:6267165-6267184 | MS.gene93205:CDS | 40.0% | |
| AAGTTTGGCAGAGTTCTTCT+AGG | + | chr4.2:6268453-6268472 | MS.gene93205:CDS | 40.0% | |
| ACATTACCAGAAACACCAGA+AGG | - | chr4.2:6267993-6268012 | None:intergenic | 40.0% | |
| AGGAGGAGAGAGAAAATTTC+AGG | - | chr4.2:6267303-6267322 | None:intergenic | 40.0% | |
| AGTTTGGCAGAGTTCTTCTA+GGG | + | chr4.2:6268454-6268473 | MS.gene93205:CDS | 40.0% | |
| ATTTGGCATTTGGAGGAAGT+AGG | + | chr4.2:6268396-6268415 | MS.gene93205:CDS | 40.0% | |
| CAAGAAGAATTTGATGGGGA+GGG | + | chr4.2:6268343-6268362 | MS.gene93205:CDS | 40.0% | |
| CGGGTTACAGATTCTTGATT+TGG | + | chr4.2:6267683-6267702 | MS.gene93205:CDS | 40.0% | |
| GGAGGAGAGAGAAAATTTCA+GGG | - | chr4.2:6267302-6267321 | None:intergenic | 40.0% | |
| TCAAGAAGAATTTGATGGGG+AGG | + | chr4.2:6268342-6268361 | MS.gene93205:CDS | 40.0% | |
| TGAAGAACCAATCGCTTGAA+CGG | - | chr4.2:6267766-6267785 | None:intergenic | 40.0% | |
| TGGAATCGCTGAATCGATAT+CGG | - | chr4.2:6267907-6267926 | None:intergenic | 40.0% | |
| TGGGAAAACGTAACGAAATC+TGG | + | chr4.2:6267735-6267754 | MS.gene93205:CDS | 40.0% | |
| TTTGGAAAACGGTTACGTGA+AGG | + | chr4.2:6267701-6267720 | MS.gene93205:CDS | 40.0% | |
| ! | GCATAGTTTGAGACCTGTTA+CGG | + | chr4.2:6267854-6267873 | MS.gene93205:CDS | 40.0% |
| !! | CATAATCTGTTGATGGCTTC+TGG | + | chr4.2:6267954-6267973 | MS.gene93205:CDS | 40.0% |
| !! | CTGGTGTTTCTGGTAATGTT+AGG | + | chr4.2:6267994-6268013 | MS.gene93205:CDS | 40.0% |
| !! | TCAAAGGATTTGGCTTTGGA+AGG | - | chr4.2:6267351-6267370 | None:intergenic | 40.0% |
| !!! | CAAGTTTTTTGCACTAAGGG+TGG | + | chr4.2:6268266-6268285 | MS.gene93205:CDS | 40.0% |
| AAACAAACCCTAACCTCAGC+TGG | + | chr4.2:6267210-6267229 | MS.gene93205:CDS | 45.0% | |
| AGGAGAGTCTCTTCCGTTTA+AGG | - | chr4.2:6267490-6267509 | None:intergenic | 45.0% | |
| ATAGTCACAATCGACGTTGG+AGG | + | chr4.2:6267168-6267187 | MS.gene93205:CDS | 45.0% | |
| GGAGAGTCTCTTCCGTTTAA+GGG | - | chr4.2:6267489-6267508 | None:intergenic | 45.0% | |
| GTCTGATCTGAAAACACCAC+CGG | - | chr4.2:6267142-6267161 | None:intergenic | 45.0% | |
| TCTGATCTGAAAACACCACC+GGG | - | chr4.2:6267141-6267160 | None:intergenic | 45.0% | |
| TTGTGAGCAATCTCCGTAAC+AGG | - | chr4.2:6267870-6267889 | None:intergenic | 45.0% | |
| ! | CTGTCGATGAAAGGTGTGTA+GGG | - | chr4.2:6267276-6267295 | None:intergenic | 45.0% |
| ! | TCTGTCGATGAAAGGTGTGT+AGG | - | chr4.2:6267277-6267296 | None:intergenic | 45.0% |
| ! | TTTTGGTCCAGCTGAGGTTA+GGG | - | chr4.2:6267220-6267239 | None:intergenic | 45.0% |
| !! | GGCTTTGGAAGGAAGATTAC+CGG | - | chr4.2:6267340-6267359 | None:intergenic | 45.0% |
| !! | TTTTTGGTCCAGCTGAGGTT+AGG | - | chr4.2:6267221-6267240 | None:intergenic | 45.0% |
| AAACACCAGAAGGACCACTG+TGG | - | chr4.2:6267983-6268002 | None:intergenic | 50.0% | |
| AACACCAGAAGGACCACTGT+GGG | - | chr4.2:6267982-6268001 | None:intergenic | 50.0% | |
| AGGTTATGGGATGTTCGCTC+TGG | + | chr4.2:6268014-6268033 | MS.gene93205:CDS | 50.0% | |
| AGTGGTCCTTCTGGTGTTTC+TGG | + | chr4.2:6267984-6268003 | MS.gene93205:CDS | 50.0% | |
| ATCCACTGCAGTTTCGTTGC+TGG | - | chr4.2:6267927-6267946 | None:intergenic | 50.0% | |
| CCCGGAGAAATCATTAGCTC+CGG | - | chr4.2:6267667-6267686 | None:intergenic | 50.0% | |
| CCGGAGCTAATGATTTCTCC+GGG | + | chr4.2:6267664-6267683 | MS.gene93205:CDS | 50.0% | |
| GCCGGAGCTAATGATTTCTC+CGG | + | chr4.2:6267663-6267682 | MS.gene93205:CDS | 50.0% | |
| GGAGAAATCATTAGCTCCGG+CGG | - | chr4.2:6267664-6267683 | None:intergenic | 50.0% | |
| GGTTCAACCGTTCAAGCGAT+TGG | + | chr4.2:6267756-6267775 | MS.gene93205:CDS | 50.0% | |
| TCAGGGTCTCTGTCGATGAA+AGG | - | chr4.2:6267285-6267304 | None:intergenic | 50.0% | |
| TCGCTCTGGCAACGTTGTTT+GGG | + | chr4.2:6268028-6268047 | MS.gene93205:CDS | 50.0% | |
| TGGAAGGAAGATTACCGGTG+CGG | - | chr4.2:6267335-6267354 | None:intergenic | 50.0% | |
| TTCCAGCAACGAAACTGCAG+TGG | + | chr4.2:6267922-6267941 | MS.gene93205:CDS | 50.0% | |
| TTCGCTCTGGCAACGTTGTT+TGG | + | chr4.2:6268027-6268046 | MS.gene93205:CDS | 50.0% | |
| ! | ATGGGGAGGGTGCAAGATAT+GGG | + | chr4.2:6268356-6268375 | MS.gene93205:CDS | 50.0% |
| ! | CCTTTGATTGGTCACTTCGC+CGG | + | chr4.2:6267571-6267590 | MS.gene93205:CDS | 50.0% |
| ! | GAAAGGTGTGTAGGGTGAAG+AGG | - | chr4.2:6267268-6267287 | None:intergenic | 50.0% |
| ! | TTGCACTAAGGGTGGTGATG+TGG | + | chr4.2:6268274-6268293 | MS.gene93205:CDS | 50.0% |
| !!! | GAAGGTTTTTGGTCCAGCTG+AGG | - | chr4.2:6267226-6267245 | None:intergenic | 50.0% |
| AAGGAAGATTACCGGTGCGG+AGG | - | chr4.2:6267332-6267351 | None:intergenic | 55.0% | |
| ACCGGGATGAGAACCTGCAA+AGG | - | chr4.2:6267124-6267143 | None:intergenic | 55.0% | |
| ACCGTAAGGGGTGGTTGCAA+CGG | - | chr4.2:6267517-6267536 | None:intergenic | 55.0% | |
| ACCGTTGCAACCACCCCTTA+CGG | + | chr4.2:6267513-6267532 | MS.gene93205:CDS | 55.0% | |
| CCCTTTGCAGGTTCTCATCC+CGG | + | chr4.2:6267120-6267139 | MS.gene93205:CDS | 55.0% | |
| CCGGCGAAGTGACCAATCAA+AGG | - | chr4.2:6267574-6267593 | None:intergenic | 55.0% | |
| CCGGGATGAGAACCTGCAAA+GGG | - | chr4.2:6267123-6267142 | None:intergenic | 55.0% | |
| GAAATCATTAGCTCCGGCGG+CGG | - | chr4.2:6267661-6267680 | None:intergenic | 55.0% | |
| GGATGAGAACCTGCAAAGGG+TGG | - | chr4.2:6267120-6267139 | None:intergenic | 55.0% | |
| TTTGCAGGTTCTCATCCCGG+TGG | + | chr4.2:6267123-6267142 | MS.gene93205:CDS | 55.0% | |
| ! | AGGGTGGTGATGTGGAGCTA+TGG | + | chr4.2:6268282-6268301 | MS.gene93205:CDS | 55.0% |
| ! | GATGGGGAGGGTGCAAGATA+TGG | + | chr4.2:6268355-6268374 | MS.gene93205:CDS | 55.0% |
| ATGGCTTCTGGGTCCCACAG+TGG | + | chr4.2:6267966-6267985 | MS.gene93205:CDS | 60.0% | |
| CGACGTGGAGGGAACCGTAA+GGG | - | chr4.2:6267530-6267549 | None:intergenic | 60.0% | |
| GACGTGGAGGGAACCGTAAG+GGG | - | chr4.2:6267529-6267548 | None:intergenic | 60.0% | |
| GTAAGGGGTGGTTGCAACGG+TGG | - | chr4.2:6267514-6267533 | None:intergenic | 60.0% | |
| ! | GGGAGGGTGCAAGATATGGG+AGG | + | chr4.2:6268359-6268378 | MS.gene93205:CDS | 60.0% |
| CTCCTCTCTCTCCTCCGCAC+CGG | + | chr4.2:6267318-6267337 | MS.gene93205:CDS | 65.0% | |
| GCGACGTGGAGGGAACCGTA+AGG | - | chr4.2:6267531-6267550 | None:intergenic | 65.0% | |
| GGGGTGGTTGCAACGGTGGA+AGG | - | chr4.2:6267510-6267529 | None:intergenic | 65.0% | |
| GGGTCCCACAGTGGTCCTTC+TGG | + | chr4.2:6267975-6267994 | MS.gene93205:CDS | 65.0% | |
| GGTTCCCTCCACGTCGCACA+CGG | + | chr4.2:6267534-6267553 | MS.gene93205:CDS | 65.0% | |
| GTGGAGGGAACCGTAAGGGG+TGG | - | chr4.2:6267526-6267545 | None:intergenic | 65.0% | |
| TACCGGTGCGGAGGAGAGAG+AGG | - | chr4.2:6267323-6267342 | None:intergenic | 65.0% | |
| TCTTGCTGCCGTGTGCGACG+TGG | - | chr4.2:6267545-6267564 | None:intergenic | 65.0% | |
| CGGTGCGGAGGAGAGAGAGG+AGG | - | chr4.2:6267320-6267339 | None:intergenic | 70.0% | |
| GCTGCCGTGTGCGACGTGGA+GGG | - | chr4.2:6267541-6267560 | None:intergenic | 70.0% | |
| TGCTGCCGTGTGCGACGTGG+AGG | - | chr4.2:6267542-6267561 | None:intergenic | 70.0% | |
| GCTCCGGCGGCGGCTAACGA+CGG | - | chr4.2:6267651-6267670 | None:intergenic | 75.0% | |
| TCGCCGTCGTTAGCCGCCGC+CGG | + | chr4.2:6267645-6267664 | MS.gene93205:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 6267114 | 6268484 | 6267114 | ID=MS.gene93205 |
| chr4.2 | mRNA | 6267114 | 6268484 | 6267114 | ID=MS.gene93205.t1;Parent=MS.gene93205 |
| chr4.2 | exon | 6267114 | 6268484 | 6267114 | ID=MS.gene93205.t1.exon1;Parent=MS.gene93205.t1 |
| chr4.2 | CDS | 6267114 | 6268484 | 6267114 | ID=cds.MS.gene93205.t1;Parent=MS.gene93205.t1 |
| Gene Sequence |
| Protein sequence |
