AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93388

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93388.t1 MTR_4g014810 99.776 447 1 0 1 447 1 447 0.0 919
MS.gene93388.t1 MTR_1g495705 96.429 448 15 1 1 447 1 448 0.0 891
MS.gene93388.t1 MTR_1g095650 96.429 448 15 1 1 447 1 448 0.0 891
MS.gene93388.t1 MTR_1g095703 96.205 448 16 1 1 447 1 448 0.0 890
MS.gene93388.t1 MTR_6g021800 96.083 434 17 0 1 434 1 434 0.0 874
MS.gene93388.t1 MTR_6g021805 96.083 434 17 0 1 434 1 434 0.0 874
MS.gene93388.t1 MTR_1g013680 95.195 437 18 1 1 434 1 437 0.0 857
MS.gene93388.t1 MTR_1g085410 82.258 434 77 0 1 434 1 434 0.0 743
MS.gene93388.t1 MTR_1g101870 80.963 436 78 3 1 436 1 431 0.0 731
MS.gene93388.t1 MTR_1g101870 80.963 436 78 3 1 436 1 431 0.0 728
MS.gene93388.t1 MTR_1g024175 78.802 434 92 0 1 434 1 434 0.0 726
MS.gene93388.t1 MTR_8g014590 79.065 449 91 2 1 446 1 449 0.0 717
MS.gene93388.t1 MTR_1g095650 95.389 347 15 1 102 447 1 347 0.0 682
MS.gene93388.t1 MTR_2g082730 73.364 428 97 2 1 426 1 413 0.0 647
MS.gene93388.t1 MTR_5g037350 67.377 469 116 1 3 434 13 481 0.0 634
MS.gene93388.t1 MTR_1g089520 70.930 430 107 3 4 432 5 417 0.0 625
MS.gene93388.t1 MTR_2g082665 68.224 428 93 2 1 426 1 387 0.0 590
MS.gene93388.t1 MTR_2g037420 64.159 452 116 4 1 447 1 411 0.0 566
MS.gene93388.t1 MTR_8g013910 64.286 448 125 5 1 432 1 429 0.0 555
MS.gene93388.t1 MTR_2g080210 63.453 446 121 5 1 443 1 407 0.0 551
MS.gene93388.t1 MTR_8g008740 78.154 325 70 1 1 324 1 325 0.0 540
MS.gene93388.t1 MTR_1g112460 64.765 298 63 4 155 446 1 262 6.55e-124 361
MS.gene93388.t1 MTR_1g495735 74.627 201 41 1 240 430 106 306 2.31e-99 300
MS.gene93388.t1 MTR_1g495735 71.698 53 15 0 21 73 2 54 4.76e-17 82.0
MS.gene93388.t1 MTR_6g080420 38.173 427 256 5 5 426 89 512 1.39e-98 305
MS.gene93388.t1 MTR_8g106700 37.939 427 255 6 4 424 43 465 9.44e-95 293
MS.gene93388.t1 MTR_8g106700 37.939 427 255 6 4 424 49 471 1.17e-94 293
MS.gene93388.t1 MTR_8g106700 37.939 427 255 6 4 424 70 492 3.41e-94 293
MS.gene93388.t1 MTR_8g087950 36.000 425 264 5 7 426 275 696 1.71e-90 289
MS.gene93388.t1 MTR_1g101880 87.013 154 20 0 1 154 1 154 6.54e-90 274
MS.gene93388.t1 MTR_8g087950 35.748 428 267 5 7 429 348 772 8.85e-90 289
MS.gene93388.t1 MTR_4g054970 56.612 242 76 4 193 431 50 265 4.45e-81 252
MS.gene93388.t1 MTR_4g054970 75.000 44 11 0 1 44 1 44 7.02e-13 69.3
MS.gene93388.t1 MTR_1g024165 81.429 140 26 0 6 145 10 149 1.11e-78 241
MS.gene93388.t1 MTR_8g014950 76.471 102 24 0 3 104 4 105 1.50e-47 159
MS.gene93388.t1 MTR_7g094460 30.137 438 246 14 3 429 59 447 6.75e-45 162
MS.gene93388.t1 MTR_2g021300 29.613 439 247 12 3 429 46 434 4.43e-43 157
MS.gene93388.t1 MTR_7g098190 53.293 167 52 5 56 220 10 152 1.16e-42 149
MS.gene93388.t1 MTR_3g076660 29.730 444 251 15 3 429 88 487 1.13e-39 149
MS.gene93388.t1 MTR_8g014960 73.239 71 19 0 213 283 2 72 3.11e-29 113
MS.gene93388.t1 MTR_3g097250 26.471 272 143 9 9 272 85 307 5.92e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93388.t1 AT5G60390 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene93388.t1 AT5G60390 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene93388.t1 AT5G60390 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene93388.t1 AT1G07920 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene93388.t1 AT1G07940 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene93388.t1 AT1G07940 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene93388.t1 AT1G07940 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene93388.t1 AT1G07940 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene93388.t1 AT1G07930 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene93388.t1 AT1G07930 98.039 255 5 0 1 255 1 255 0.0 528
MS.gene93388.t1 AT1G07930 86.207 116 16 0 331 446 254 369 1.65e-64 212
MS.gene93388.t1 AT1G18070 37.176 425 259 5 5 424 99 520 2.79e-95 297
MS.gene93388.t1 AT1G18070 37.176 425 259 5 5 424 99 520 2.79e-95 297
MS.gene93388.t1 AT1G18070 36.468 436 258 6 5 424 99 531 3.24e-92 289
MS.gene93388.t1 AT5G10630 35.529 425 266 5 7 426 239 660 7.61e-91 289
MS.gene93388.t1 AT5G10630 35.529 425 266 5 7 426 240 661 7.79e-91 289
MS.gene93388.t1 AT5G10630 35.529 425 266 5 7 426 240 661 7.79e-91 289
MS.gene93388.t1 AT5G10630 35.529 425 266 5 7 426 310 731 2.86e-90 290
MS.gene93388.t1 AT5G10630 35.529 425 266 5 7 426 315 736 3.76e-90 289
MS.gene93388.t1 AT1G35550 75.962 104 25 0 335 438 1 104 2.33e-51 169
MS.gene93388.t1 AT4G20360 30.575 435 253 10 3 426 75 471 3.00e-44 161
MS.gene93388.t1 AT4G20360 30.575 435 253 10 3 426 75 471 3.00e-44 161
MS.gene93388.t1 AT4G02930 29.841 439 247 15 3 429 63 452 4.43e-43 157
MS.gene93388.t1 AT2G31060 25.000 264 160 8 9 263 61 295 4.32e-12 68.6
MS.gene93388.t1 AT5G39900 25.839 298 158 8 4 288 64 311 6.54e-12 68.2
MS.gene93388.t1 AT5G08650 26.518 313 172 13 9 311 88 352 1.16e-11 67.4
MS.gene93388.t1 AT5G08650 26.518 313 172 13 9 311 88 352 1.23e-11 67.4
MS.gene93388.t1 AT2G31060 24.615 260 162 7 9 263 61 291 5.55e-11 65.1

Find 135 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCACGGTTCATTTCTTCT+TGG 0.216911 4.1:-81411451 None:intergenic
GCTCTCCTTGCTTTCACTCT+TGG 0.289982 4.1:+81410429 MS.gene93388:CDS
ATCTCCATTCTTCAGGAACT+TGG 0.311336 4.1:-81411256 None:intergenic
GTCTACAAGATTGGAGGAAT+TGG 0.315206 4.1:+81410841 MS.gene93388:CDS
AAGTTAGCAGCCTCCTTGGC+TGG 0.316454 4.1:-81411081 None:intergenic
CACATTAACATTGTTGTCAT+TGG 0.329838 4.1:+81410039 MS.gene93388:CDS
TTCATTAAGAACATGATTAC+TGG 0.336870 4.1:+81410312 MS.gene93388:CDS
TCTCTCACTGAGGCACTTCC+CGG 0.352595 4.1:+81410976 MS.gene93388:CDS
TACCAGCATCTCCATTCTTC+AGG 0.357413 4.1:-81411263 None:intergenic
CTCCTTGGCTGGGTCATCCT+TGG 0.371796 4.1:-81411070 None:intergenic
GCAAAAGTCACCACCATTCC+AGG 0.373840 4.1:-81410904 None:intergenic
ACTAAGATTGACAGGCGTTC+TGG 0.379305 4.1:+81411213 MS.gene93388:CDS
TGCGTCAAACTGTGGCTGTT+GGG 0.385555 4.1:+81411370 MS.gene93388:CDS
GTCATTGGCCATGTCGACTC+TGG 0.395247 4.1:+81410054 MS.gene93388:CDS
CACCACCATTCCAGGTTTCA+TGG 0.400023 4.1:-81410896 None:intergenic
ATTCCATTCGTTCCCATCTC+TGG 0.404373 4.1:+81410682 MS.gene93388:CDS
ATACCTGCTCTTGGAATACT+TGG 0.419677 4.1:-81410599 None:intergenic
ATGAATCACCCTGGCCAGAT+TGG 0.425183 4.1:+81411123 MS.gene93388:CDS
TTCACGGGTCTGACCATCCT+TGG 0.425447 4.1:-81410403 None:intergenic
CTCATCATTGACTCCACTAC+TGG 0.425797 4.1:+81410360 MS.gene93388:CDS
ATAGCCAACCTTCTTCATAT+AGG 0.426065 4.1:-81410647 None:intergenic
CTTAATGAAATCCCTGTGTC+CGG 0.429384 4.1:-81410298 None:intergenic
AATTTCATCATACCTGCTCT+TGG 0.430266 4.1:-81410608 None:intergenic
GGCTTGTCTGATGGCCTCTT+AGG 0.432559 4.1:-81410796 None:intergenic
CACCCTGGCCAGATTGGAAA+TGG 0.432985 4.1:+81411129 MS.gene93388:CDS
GCCCCTCCGACTACCACTTC+AGG 0.433104 4.1:+81410816 MS.gene93388:CDS
GAGGTGTGGCAGTCAAGCAC+AGG 0.434332 4.1:-81411159 None:intergenic
AAGGACAATGGGTAAGGAAA+AGG 0.440646 4.1:+81410014 None:intergenic
GGGCATAGCCATTTCCAATC+TGG 0.448022 4.1:-81411137 None:intergenic
AGCGTTCATTCAAGTATGCT+TGG 0.450783 4.1:+81410172 MS.gene93388:CDS
TGTGGCTGTTGGGGTTATCA+AGG 0.455009 4.1:+81411380 MS.gene93388:CDS
CTTCAGGATGTCTACAAGAT+TGG 0.458119 4.1:+81410832 MS.gene93388:CDS
TTAGTTATCTTAACAGTGCC+AGG 0.458448 4.1:-81411420 None:intergenic
GCGTTCATTCAAGTATGCTT+GGG 0.461276 4.1:+81410173 MS.gene93388:CDS
AGTCTCAACAACCATGGGCT+TGG 0.462350 4.1:-81411304 None:intergenic
CTCAACAACCATGGGCTTGG+TGG 0.464097 4.1:-81411301 None:intergenic
TTAATGAAATCCCTGTGTCC+GGG 0.473933 4.1:-81410297 None:intergenic
TAGCCATTTCCAATCTGGCC+AGG 0.474048 4.1:-81411132 None:intergenic
ATCAAATCAATGAGCCTAAG+AGG 0.476814 4.1:+81410782 MS.gene93388:CDS
TGTGAAGTTAGCAGCCTCCT+TGG 0.480074 4.1:-81411085 None:intergenic
TACAAATCTTGACTGGTACA+AGG 0.490199 4.1:+81410735 MS.gene93388:CDS
GAGCCCAAGTTCCTGAAGAA+TGG 0.491587 4.1:+81411252 MS.gene93388:CDS
AGTCGGAGGGGCTTGTCTGA+TGG 0.496444 4.1:-81410805 None:intergenic
ATCTCCCTCAAAACCAGAGA+TGG 0.496573 4.1:-81410695 None:intergenic
GATTGACAGGCGTTCTGGTA+AGG 0.497183 4.1:+81411218 MS.gene93388:CDS
AGCTTGTTACTAAGATTGAC+AGG 0.504274 4.1:+81411205 MS.gene93388:CDS
TGGGTCATCCTTGGTGTTTG+AGG 0.504620 4.1:-81411061 None:intergenic
CTTGGAATACTTGGGTGTAG+TGG 0.514389 4.1:-81410590 None:intergenic
TGAGAACAGCACAATCAGCT+TGG 0.516820 4.1:-81410341 None:intergenic
GAGAACAGCACAATCAGCTT+GGG 0.517298 4.1:-81410340 None:intergenic
TATCAAGGGTGTGGAGAAGA+AGG 0.517386 4.1:+81411395 MS.gene93388:CDS
ACTTCAGTTTGCAGTCCAGT+TGG 0.517541 4.1:-81410928 None:intergenic
CAAGAGCCTCAAGAAGTGTT+GGG 0.518886 4.1:-81410759 None:intergenic
ATTAAATCCCACATTGTCAC+CGG 0.519224 4.1:-81410995 None:intergenic
TGTTAAGAATGTTTCTGTCA+AGG 0.521267 4.1:+81411017 MS.gene93388:CDS
CAGGATGTCTACAAGATTGG+AGG 0.523217 4.1:+81410835 MS.gene93388:CDS
TCTCCATTCTTCAGGAACTT+GGG 0.527363 4.1:-81411255 None:intergenic
TTGCTTTCACTCTTGGTGTG+AGG 0.528420 4.1:+81410436 MS.gene93388:CDS
TTCCTGAAGAATGGAGATGC+TGG 0.528428 4.1:+81411261 MS.gene93388:CDS
GCTTTCAAGGACAATGGGTA+AGG 0.529060 4.1:+81410008 None:intergenic
AGTTTCATCCTATATGAAGA+AGG 0.530606 4.1:+81410639 MS.gene93388:CDS
TCAAGAGCCTCAAGAAGTGT+TGG 0.532468 4.1:-81410760 None:intergenic
CTCAAGGCTGAGCGTGAAAG+AGG 0.533500 4.1:+81410207 MS.gene93388:CDS
AGTTAGCAGCCTCCTTGGCT+GGG 0.535132 4.1:-81411080 None:intergenic
TCATTGGCCATGTCGACTCT+GGG 0.536467 4.1:+81410055 MS.gene93388:CDS
AGCAAACTTGACAGCAATGT+GGG 0.541075 4.1:-81411181 None:intergenic
CCAGTCTCAACACGTCCGAC+AGG 0.541163 4.1:-81410871 None:intergenic
CCTGTCGGACGTGTTGAGAC+TGG 0.541718 4.1:+81410871 MS.gene93388:CDS
AGCTTCAAAACCACCAGTAG+TGG 0.543721 4.1:-81410373 None:intergenic
TTCTCTGAATATCCTCCACT+TGG 0.543785 4.1:+81411327 MS.gene93388:CDS
AGGTGTGGCAGTCAAGCACA+GGG 0.544526 4.1:-81411158 None:intergenic
TGCACTGTCATTGATGCCCC+CGG 0.544718 4.1:+81410279 MS.gene93388:CDS
TCATCCTATATGAAGAAGGT+TGG 0.544820 4.1:+81410643 MS.gene93388:CDS
CACTTGATCTACAAGCTTGG+AGG 0.545798 4.1:+81410096 MS.gene93388:CDS
ATCATTGACTCCACTACTGG+TGG 0.550177 4.1:+81410363 MS.gene93388:CDS
GGTCACTTGATCTACAAGCT+TGG 0.555547 4.1:+81410093 MS.gene93388:CDS
ATGCGTCAAACTGTGGCTGT+TGG 0.557227 4.1:+81411369 MS.gene93388:CDS
GAAGCTGGTATTTCCAAGGA+TGG 0.557613 4.1:+81410390 MS.gene93388:CDS
TCAACAACCATGGGCTTGGT+GGG 0.557624 4.1:-81411300 None:intergenic
AAGCAAGGAGAGCATGTTCA+CGG 0.559179 4.1:-81410419 None:intergenic
TGTTGGGGTTATCAAGGGTG+TGG 0.563472 4.1:+81411386 MS.gene93388:CDS
GCATATCTCTGACAGCAAAA+CGG 0.563498 4.1:-81411350 None:intergenic
ACAAATCTTGACTGGTACAA+GGG 0.563768 4.1:+81410736 MS.gene93388:CDS
GTGGCTGTTGGGGTTATCAA+GGG 0.565604 4.1:+81411381 MS.gene93388:CDS
CAGGTATGATGAAATTGTGA+AGG 0.569288 4.1:+81410615 MS.gene93388:CDS
TCTGGGAAGTCAACTACCAC+TGG 0.570179 4.1:+81410072 MS.gene93388:CDS
TAATGAAATCCCTGTGTCCG+GGG 0.570266 4.1:-81410296 None:intergenic
CACCCAAGTATTCCAAGAGC+AGG 0.570501 4.1:+81410596 MS.gene93388:CDS
TTGGGTTCTTGACAAGCTCA+AGG 0.572280 4.1:+81410191 MS.gene93388:CDS
AGCAAGGAGAGCATGTTCAC+GGG 0.572470 4.1:-81410418 None:intergenic
ATCCTGAAGTGGTAGTCGGA+GGG 0.576252 4.1:-81410818 None:intergenic
GATGATTCCCACCAAGCCCA+TGG 0.580619 4.1:+81411293 MS.gene93388:CDS
AAACCAGAGATGGGAACGAA+TGG 0.584939 4.1:-81410685 None:intergenic
GCGTCAAACTGTGGCTGTTG+GGG 0.590275 4.1:+81411371 MS.gene93388:CDS
CACCAAGGATGACCCAGCCA+AGG 0.594197 4.1:+81411068 MS.gene93388:CDS
GAGAAAGTCTCAACAACCAT+GGG 0.598729 4.1:-81411309 None:intergenic
TTGACTTCCCAGAGTCGACA+TGG 0.600770 4.1:-81410062 None:intergenic
TTGACAAGCGTGTGATCGAG+AGG 0.602725 4.1:+81410121 MS.gene93388:CDS
GGCACTTCCCGGTGACAATG+TGG 0.604709 4.1:+81410987 MS.gene93388:CDS
TCTCCCTCAAAACCAGAGAT+GGG 0.607478 4.1:-81410694 None:intergenic
TCCTGAAGTGGTAGTCGGAG+GGG 0.608492 4.1:-81410817 None:intergenic
AGCGCTCTACAAATCTTGAC+TGG 0.610562 4.1:+81410728 MS.gene93388:CDS
GGTGTGGAGAAGAAGGAACC+TGG 0.612825 4.1:+81411402 MS.gene93388:CDS
AGAGAAAGTCTCAACAACCA+TGG 0.614767 4.1:-81411310 None:intergenic
GCACTTCCCGGTGACAATGT+GGG 0.616830 4.1:+81410988 MS.gene93388:CDS
GCAAACTGAAGTCAAGTCTG+TGG 0.619692 4.1:+81410939 MS.gene93388:CDS
TCACACCAAGAGTGAAAGCA+AGG 0.621193 4.1:-81410434 None:intergenic
ATCTTGTAGACATCCTGAAG+TGG 0.621388 4.1:-81410829 None:intergenic
CAAGGGCCCAACACTTCTTG+AGG 0.622743 4.1:+81410753 MS.gene93388:CDS
AGCCATTTCCAATCTGGCCA+GGG 0.623271 4.1:-81411131 None:intergenic
ACAGCAAAACGGCCAAGTGG+AGG 0.624787 4.1:-81411339 None:intergenic
TACCTGCTCTTGGAATACTT+GGG 0.632334 4.1:-81410598 None:intergenic
GGAATTGGAACTGTTCCTGT+CGG 0.634263 4.1:+81410856 MS.gene93388:CDS
CATCCTGAAGTGGTAGTCGG+AGG 0.637451 4.1:-81410819 None:intergenic
AGACATCCTGAAGTGGTAGT+CGG 0.638051 4.1:-81410822 None:intergenic
CAGCAAACTTGACAGCAATG+TGG 0.638328 4.1:-81411182 None:intergenic
GAGACTGGTACCATGAAACC+TGG 0.643102 4.1:+81410886 MS.gene93388:CDS
AATGATCTGCTGCTGCAACA+AGG 0.643325 4.1:+81410461 MS.gene93388:CDS
TGACAGCAATGTGGGAGGTG+TGG 0.650950 4.1:-81411173 None:intergenic
AATGAAATCCCTGTGTCCGG+GGG 0.661737 4.1:-81410295 None:intergenic
TCTGTCAAGGATCTCAAGCG+TGG 0.663761 4.1:+81411030 MS.gene93388:CDS
TTAAATCCCACATTGTCACC+GGG 0.665158 4.1:-81410994 None:intergenic
CAGAGATATGCGTCAAACTG+TGG 0.666313 4.1:+81411362 MS.gene93388:CDS
CAAGGATGACCCAGCCAAGG+AGG 0.668893 4.1:+81411071 MS.gene93388:CDS
TTCTGGTAAGGAGATCGAGA+AGG 0.668930 4.1:+81411230 MS.gene93388:CDS
CTGACAGCAAAACGGCCAAG+TGG 0.679918 4.1:-81411342 None:intergenic
GTGATTATCATGAATCACCC+TGG 0.681230 4.1:+81411114 MS.gene93388:CDS
TACCATGAAACCTGGAATGG+TGG 0.682936 4.1:+81410894 MS.gene93388:CDS
CTTGTAGATCAAGTGACCAG+TGG 0.695213 4.1:-81410088 None:intergenic
AAACTTGACAGCAATGTGGG+AGG 0.695398 4.1:-81411178 None:intergenic
TCACAATTGACATTGCTCTG+TGG 0.708352 4.1:+81410232 MS.gene93388:CDS
TGGTACCATGAAACCTGGAA+TGG 0.712415 4.1:+81410891 MS.gene93388:CDS
GGTGTGGCAGTCAAGCACAG+GGG 0.731105 4.1:-81411157 None:intergenic
TTATGTTGCCTCAAACACCA+AGG 0.751394 4.1:+81411053 MS.gene93388:CDS
GCATCATGAATCTCTCACTG+AGG 0.754777 4.1:+81410966 MS.gene93388:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAGTTAGTTTATAC+AGG + chr4.1:81410534-81410553 MS.gene93388:intron 15.0%
!! ATAATCTAATGCAACTAAAT+AGG - chr4.1:81410515-81410534 None:intergenic 20.0%
!! TAATCTAATGCAACTAAATA+GGG - chr4.1:81410514-81410533 None:intergenic 20.0%
! AATCTAATGCAACTAAATAG+GGG - chr4.1:81410513-81410532 None:intergenic 25.0%
! TTCATTAAGAACATGATTAC+TGG + chr4.1:81410312-81410331 MS.gene93388:CDS 25.0%
!! TTTTTGATATCTTGAACAGA+TGG + chr4.1:81410564-81410583 MS.gene93388:intron 25.0%
AGTTTCATCCTATATGAAGA+AGG + chr4.1:81410639-81410658 MS.gene93388:CDS 30.0%
CACATTAACATTGTTGTCAT+TGG + chr4.1:81410039-81410058 MS.gene93388:CDS 30.0%
! GAACGAATGGAATTTTATCT+GGG - chr4.1:81410675-81410694 None:intergenic 30.0%
! TGTTAAGAATGTTTCTGTCA+AGG + chr4.1:81411017-81411036 MS.gene93388:CDS 30.0%
AATTTCATCATACCTGCTCT+TGG - chr4.1:81410611-81410630 None:intergenic 35.0%
ACAAATCTTGACTGGTACAA+GGG + chr4.1:81410736-81410755 MS.gene93388:CDS 35.0%
ATAGCCAACCTTCTTCATAT+AGG - chr4.1:81410650-81410669 None:intergenic 35.0%
ATCAAATCAATGAGCCTAAG+AGG + chr4.1:81410782-81410801 MS.gene93388:CDS 35.0%
ATTAAATCCCACATTGTCAC+CGG - chr4.1:81410998-81411017 None:intergenic 35.0%
CAGGTATGATGAAATTGTGA+AGG + chr4.1:81410615-81410634 MS.gene93388:CDS 35.0%
TACAAATCTTGACTGGTACA+AGG + chr4.1:81410735-81410754 MS.gene93388:CDS 35.0%
TCATCCTATATGAAGAAGGT+TGG + chr4.1:81410643-81410662 MS.gene93388:CDS 35.0%
TTAGTTATCTTAACAGTGCC+AGG - chr4.1:81411423-81411442 None:intergenic 35.0%
! GGAACGAATGGAATTTTATC+TGG - chr4.1:81410676-81410695 None:intergenic 35.0%
!! AGCTTGTTACTAAGATTGAC+AGG + chr4.1:81411205-81411224 MS.gene93388:CDS 35.0%
!!! TTTTGAAGCTGGTATTTCCA+AGG + chr4.1:81410386-81410405 MS.gene93388:CDS 35.0%
AGAGAAAGTCTCAACAACCA+TGG - chr4.1:81411313-81411332 None:intergenic 40.0%
AGCAAACTTGACAGCAATGT+GGG - chr4.1:81411184-81411203 None:intergenic 40.0%
AGCGTTCATTCAAGTATGCT+TGG + chr4.1:81410172-81410191 MS.gene93388:CDS 40.0%
ATACCTGCTCTTGGAATACT+TGG - chr4.1:81410602-81410621 None:intergenic 40.0%
ATCTCCATTCTTCAGGAACT+TGG - chr4.1:81411259-81411278 None:intergenic 40.0%
ATCTTGTAGACATCCTGAAG+TGG - chr4.1:81410832-81410851 None:intergenic 40.0%
CTTAATGAAATCCCTGTGTC+CGG - chr4.1:81410301-81410320 None:intergenic 40.0%
CTTCAGGATGTCTACAAGAT+TGG + chr4.1:81410832-81410851 MS.gene93388:CDS 40.0%
GAGAAAGTCTCAACAACCAT+GGG - chr4.1:81411312-81411331 None:intergenic 40.0%
GCATATCTCTGACAGCAAAA+CGG - chr4.1:81411353-81411372 None:intergenic 40.0%
GCGTTCATTCAAGTATGCTT+GGG + chr4.1:81410173-81410192 MS.gene93388:CDS 40.0%
GTCTACAAGATTGGAGGAAT+TGG + chr4.1:81410841-81410860 MS.gene93388:CDS 40.0%
GTGATTATCATGAATCACCC+TGG + chr4.1:81411114-81411133 MS.gene93388:CDS 40.0%
TACCTGCTCTTGGAATACTT+GGG - chr4.1:81410601-81410620 None:intergenic 40.0%
TCACAATTGACATTGCTCTG+TGG + chr4.1:81410232-81410251 MS.gene93388:CDS 40.0%
TCTCCATTCTTCAGGAACTT+GGG - chr4.1:81411258-81411277 None:intergenic 40.0%
TTAAATCCCACATTGTCACC+GGG - chr4.1:81410997-81411016 None:intergenic 40.0%
TTAATGAAATCCCTGTGTCC+GGG - chr4.1:81410300-81410319 None:intergenic 40.0%
TTATGTTGCCTCAAACACCA+AGG + chr4.1:81411053-81411072 MS.gene93388:CDS 40.0%
TTCTCTGAATATCCTCCACT+TGG + chr4.1:81411327-81411346 MS.gene93388:CDS 40.0%
AAACCAGAGATGGGAACGAA+TGG - chr4.1:81410688-81410707 None:intergenic 45.0%
AAACTTGACAGCAATGTGGG+AGG - chr4.1:81411181-81411200 None:intergenic 45.0%
AATGATCTGCTGCTGCAACA+AGG + chr4.1:81410461-81410480 MS.gene93388:CDS 45.0%
ACTAAGATTGACAGGCGTTC+TGG + chr4.1:81411213-81411232 MS.gene93388:CDS 45.0%
ACTTCAGTTTGCAGTCCAGT+TGG - chr4.1:81410931-81410950 None:intergenic 45.0%
AGACATCCTGAAGTGGTAGT+CGG - chr4.1:81410825-81410844 None:intergenic 45.0%
AGCGCTCTACAAATCTTGAC+TGG + chr4.1:81410728-81410747 MS.gene93388:CDS 45.0%
AGCTTCAAAACCACCAGTAG+TGG - chr4.1:81410376-81410395 None:intergenic 45.0%
ATCTCCCTCAAAACCAGAGA+TGG - chr4.1:81410698-81410717 None:intergenic 45.0%
ATTCCATTCGTTCCCATCTC+TGG + chr4.1:81410682-81410701 MS.gene93388:CDS 45.0%
CACTTGATCTACAAGCTTGG+AGG + chr4.1:81410096-81410115 MS.gene93388:CDS 45.0%
CAGAGATATGCGTCAAACTG+TGG + chr4.1:81411362-81411381 MS.gene93388:CDS 45.0%
CAGCAAACTTGACAGCAATG+TGG - chr4.1:81411185-81411204 None:intergenic 45.0%
CAGGATGTCTACAAGATTGG+AGG + chr4.1:81410835-81410854 MS.gene93388:CDS 45.0%
CTTGGAATACTTGGGTGTAG+TGG - chr4.1:81410593-81410612 None:intergenic 45.0%
CTTGTAGATCAAGTGACCAG+TGG - chr4.1:81410091-81410110 None:intergenic 45.0%
GAAGCTGGTATTTCCAAGGA+TGG + chr4.1:81410390-81410409 MS.gene93388:CDS 45.0%
GAGAACAGCACAATCAGCTT+GGG - chr4.1:81410343-81410362 None:intergenic 45.0%
GCAAACTGAAGTCAAGTCTG+TGG + chr4.1:81410939-81410958 MS.gene93388:CDS 45.0%
GCATCATGAATCTCTCACTG+AGG + chr4.1:81410966-81410985 MS.gene93388:CDS 45.0%
GGAATTGGAACTGTTCCTGT+CGG + chr4.1:81410856-81410875 MS.gene93388:CDS 45.0%
GGTCACTTGATCTACAAGCT+TGG + chr4.1:81410093-81410112 MS.gene93388:CDS 45.0%
TAATGAAATCCCTGTGTCCG+GGG - chr4.1:81410299-81410318 None:intergenic 45.0%
TACCAGCATCTCCATTCTTC+AGG - chr4.1:81411266-81411285 None:intergenic 45.0%
TACCATGAAACCTGGAATGG+TGG + chr4.1:81410894-81410913 MS.gene93388:CDS 45.0%
TCACACCAAGAGTGAAAGCA+AGG - chr4.1:81410437-81410456 None:intergenic 45.0%
TCTCCCTCAAAACCAGAGAT+GGG - chr4.1:81410697-81410716 None:intergenic 45.0%
TGAGAACAGCACAATCAGCT+TGG - chr4.1:81410344-81410363 None:intergenic 45.0%
TGGTACCATGAAACCTGGAA+TGG + chr4.1:81410891-81410910 MS.gene93388:CDS 45.0%
TTCCTGAAGAATGGAGATGC+TGG + chr4.1:81411261-81411280 MS.gene93388:CDS 45.0%
TTCTGGTAAGGAGATCGAGA+AGG + chr4.1:81411230-81411249 MS.gene93388:CDS 45.0%
TTGGGTTCTTGACAAGCTCA+AGG + chr4.1:81410191-81410210 MS.gene93388:CDS 45.0%
! AAGCAAGGAGAGCATGTTCA+CGG - chr4.1:81410422-81410441 None:intergenic 45.0%
! TATCAAGGGTGTGGAGAAGA+AGG + chr4.1:81411395-81411414 MS.gene93388:CDS 45.0%
! TCAAGAGCCTCAAGAAGTGT+TGG - chr4.1:81410763-81410782 None:intergenic 45.0%
! TTGCTTTCACTCTTGGTGTG+AGG + chr4.1:81410436-81410455 MS.gene93388:CDS 45.0%
!! ATCATTGACTCCACTACTGG+TGG + chr4.1:81410363-81410382 MS.gene93388:CDS 45.0%
!! CAAGAGCCTCAAGAAGTGTT+GGG - chr4.1:81410762-81410781 None:intergenic 45.0%
!! CTCATCATTGACTCCACTAC+TGG + chr4.1:81410360-81410379 MS.gene93388:CDS 45.0%
!!! ACTACTGGTGGTTTTGAAGC+TGG + chr4.1:81410375-81410394 MS.gene93388:CDS 45.0%
!!! GTTCCCATCTCTGGTTTTGA+GGG + chr4.1:81410691-81410710 MS.gene93388:CDS 45.0%
AATGAAATCCCTGTGTCCGG+GGG - chr4.1:81410298-81410317 None:intergenic 50.0%
AGCCATTTCCAATCTGGCCA+GGG - chr4.1:81411134-81411153 None:intergenic 50.0%
AGTCTCAACAACCATGGGCT+TGG - chr4.1:81411307-81411326 None:intergenic 50.0%
ATCCTGAAGTGGTAGTCGGA+GGG - chr4.1:81410821-81410840 None:intergenic 50.0%
ATGAATCACCCTGGCCAGAT+TGG + chr4.1:81411123-81411142 MS.gene93388:CDS 50.0%
ATGCGTCAAACTGTGGCTGT+TGG + chr4.1:81411369-81411388 MS.gene93388:CDS 50.0%
CACCACCATTCCAGGTTTCA+TGG - chr4.1:81410899-81410918 None:intergenic 50.0%
CACCCAAGTATTCCAAGAGC+AGG + chr4.1:81410596-81410615 MS.gene93388:CDS 50.0%
GAGACTGGTACCATGAAACC+TGG + chr4.1:81410886-81410905 MS.gene93388:CDS 50.0%
GAGCCCAAGTTCCTGAAGAA+TGG + chr4.1:81411252-81411271 MS.gene93388:CDS 50.0%
GATTGACAGGCGTTCTGGTA+AGG + chr4.1:81411218-81411237 MS.gene93388:CDS 50.0%
GCAAAAGTCACCACCATTCC+AGG - chr4.1:81410907-81410926 None:intergenic 50.0%
GCTCTCCTTGCTTTCACTCT+TGG + chr4.1:81410429-81410448 MS.gene93388:CDS 50.0%
GGGCATAGCCATTTCCAATC+TGG - chr4.1:81411140-81411159 None:intergenic 50.0%
GTGGCTGTTGGGGTTATCAA+GGG + chr4.1:81411381-81411400 MS.gene93388:CDS 50.0%
TAGCCATTTCCAATCTGGCC+AGG - chr4.1:81411135-81411154 None:intergenic 50.0%
TCTGGGAAGTCAACTACCAC+TGG + chr4.1:81410072-81410091 MS.gene93388:CDS 50.0%
TCTGTCAAGGATCTCAAGCG+TGG + chr4.1:81411030-81411049 MS.gene93388:CDS 50.0%
TGCGTCAAACTGTGGCTGTT+GGG + chr4.1:81411370-81411389 MS.gene93388:CDS 50.0%
TGTGAAGTTAGCAGCCTCCT+TGG - chr4.1:81411088-81411107 None:intergenic 50.0%
TGTGGCTGTTGGGGTTATCA+AGG + chr4.1:81411380-81411399 MS.gene93388:CDS 50.0%
TGTTGGGGTTATCAAGGGTG+TGG + chr4.1:81411386-81411405 MS.gene93388:CDS 50.0%
TTGACAAGCGTGTGATCGAG+AGG + chr4.1:81410121-81410140 MS.gene93388:CDS 50.0%
TTGACTTCCCAGAGTCGACA+TGG - chr4.1:81410065-81410084 None:intergenic 50.0%
! AGCAAGGAGAGCATGTTCAC+GGG - chr4.1:81410421-81410440 None:intergenic 50.0%
! GTGGTGACTTTTGCTCCAAC+TGG + chr4.1:81410913-81410932 MS.gene93388:CDS 50.0%
! TCAACAACCATGGGCTTGGT+GGG - chr4.1:81411303-81411322 None:intergenic 50.0%
!! TCATTGGCCATGTCGACTCT+GGG + chr4.1:81410055-81410074 MS.gene93388:CDS 50.0%
!! TGGGTCATCCTTGGTGTTTG+AGG - chr4.1:81411064-81411083 None:intergenic 50.0%
!!! CGTTCCCATCTCTGGTTTTG+AGG + chr4.1:81410690-81410709 MS.gene93388:CDS 50.0%
AAGTTAGCAGCCTCCTTGGC+TGG - chr4.1:81411084-81411103 None:intergenic 55.0%
ACAGCAAAACGGCCAAGTGG+AGG - chr4.1:81411342-81411361 None:intergenic 55.0%
AGGTGTGGCAGTCAAGCACA+GGG - chr4.1:81411161-81411180 None:intergenic 55.0%
AGTTAGCAGCCTCCTTGGCT+GGG - chr4.1:81411083-81411102 None:intergenic 55.0%
CAAGGGCCCAACACTTCTTG+AGG + chr4.1:81410753-81410772 MS.gene93388:CDS 55.0%
CACCCTGGCCAGATTGGAAA+TGG + chr4.1:81411129-81411148 MS.gene93388:CDS 55.0%
CATCCTGAAGTGGTAGTCGG+AGG - chr4.1:81410822-81410841 None:intergenic 55.0%
CTCAACAACCATGGGCTTGG+TGG - chr4.1:81411304-81411323 None:intergenic 55.0%
CTCAAGGCTGAGCGTGAAAG+AGG + chr4.1:81410207-81410226 MS.gene93388:CDS 55.0%
CTGACAGCAAAACGGCCAAG+TGG - chr4.1:81411345-81411364 None:intergenic 55.0%
GATGATTCCCACCAAGCCCA+TGG + chr4.1:81411293-81411312 MS.gene93388:CDS 55.0%
GCACTTCCCGGTGACAATGT+GGG + chr4.1:81410988-81411007 MS.gene93388:CDS 55.0%
GCGTCAAACTGTGGCTGTTG+GGG + chr4.1:81411371-81411390 MS.gene93388:CDS 55.0%
GGCTTGTCTGATGGCCTCTT+AGG - chr4.1:81410799-81410818 None:intergenic 55.0%
GGTGTGGAGAAGAAGGAACC+TGG + chr4.1:81411402-81411421 MS.gene93388:CDS 55.0%
TCCTGAAGTGGTAGTCGGAG+GGG - chr4.1:81410820-81410839 None:intergenic 55.0%
TGACAGCAATGTGGGAGGTG+TGG - chr4.1:81411176-81411195 None:intergenic 55.0%
TGCACTGTCATTGATGCCCC+CGG + chr4.1:81410279-81410298 MS.gene93388:CDS 55.0%
TTCACGGGTCTGACCATCCT+TGG - chr4.1:81410406-81410425 None:intergenic 55.0%
! TCTCTCACTGAGGCACTTCC+CGG + chr4.1:81410976-81410995 MS.gene93388:CDS 55.0%
!! GTCATTGGCCATGTCGACTC+TGG + chr4.1:81410054-81410073 MS.gene93388:CDS 55.0%
AGTCGGAGGGGCTTGTCTGA+TGG - chr4.1:81410808-81410827 None:intergenic 60.0%
CAAGGATGACCCAGCCAAGG+AGG + chr4.1:81411071-81411090 MS.gene93388:CDS 60.0%
CACCAAGGATGACCCAGCCA+AGG + chr4.1:81411068-81411087 MS.gene93388:CDS 60.0%
CATTGATGCCCCCGGACACA+GGG + chr4.1:81410287-81410306 MS.gene93388:CDS 60.0%
CCAGTCTCAACACGTCCGAC+AGG - chr4.1:81410874-81410893 None:intergenic 60.0%
CCTGTCGGACGTGTTGAGAC+TGG + chr4.1:81410871-81410890 MS.gene93388:CDS 60.0%
CTCCTTGGCTGGGTCATCCT+TGG - chr4.1:81411073-81411092 None:intergenic 60.0%
GAGGTGTGGCAGTCAAGCAC+AGG - chr4.1:81411162-81411181 None:intergenic 60.0%
GGCACTTCCCGGTGACAATG+TGG + chr4.1:81410987-81411006 MS.gene93388:CDS 60.0%
GGTGTGGCAGTCAAGCACAG+GGG - chr4.1:81411160-81411179 None:intergenic 60.0%
TCATTGATGCCCCCGGACAC+AGG + chr4.1:81410286-81410305 MS.gene93388:CDS 60.0%
GCCCCTCCGACTACCACTTC+AGG + chr4.1:81410816-81410835 MS.gene93388:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 81410021 81411464 81410021 ID=MS.gene93388
chr4.1 mRNA 81410021 81411464 81410021 ID=MS.gene93388.t1;Parent=MS.gene93388
chr4.1 exon 81410021 81410482 81410021 ID=MS.gene93388.t1.exon1;Parent=MS.gene93388.t1
chr4.1 CDS 81410021 81410482 81410021 ID=cds.MS.gene93388.t1;Parent=MS.gene93388.t1
chr4.1 exon 81410583 81411464 81410583 ID=MS.gene93388.t1.exon2;Parent=MS.gene93388.t1
chr4.1 CDS 81410583 81411464 81410583 ID=cds.MS.gene93388.t1;Parent=MS.gene93388.t1
Gene Sequence

>MS.gene93388

ATGGGTAAGGAAAAGGTTCACATTAACATTGTTGTCATTGGCCATGTCGACTCTGGGAAGTCAACTACCACTGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGTATCACAATTGACATTGCTCTGTGGAAGTTTGAGACAACTAAGTACTACTGCACTGTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAACATGATTACTGGTACATCCCAAGCTGATTGTGCTGTTCTCATCATTGACTCCACTACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAGGCAAATGATCTGCTGCTGCAACAAGGTATTTGAACTGTTAAATTTTTTGATGCCCCTATTTAGTTGCATTAGATTATTTTTATAGTTAGTTTATACAGGTACTGATTTTTTGATATCTTGAACAGATGGATGCCACTACACCCAAGTATTCCAAGAGCAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATATGAAGAAGGTTGGCTATAACCCAGATAAAATTCCATTCGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACAAATCTTGACTGGTACAAGGGCCCAACACTTCTTGAGGCTCTTGATCAAATCAATGAGCCTAAGAGGCCATCAGACAAGCCCCTCCGACTACCACTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTTCCTGTCGGACGTGTTGAGACTGGTACCATGAAACCTGGAATGGTGGTGACTTTTGCTCCAACTGGACTGCAAACTGAAGTCAAGTCTGTGGAGATGCATCATGAATCTCTCACTGAGGCACTTCCCGGTGACAATGTGGGATTTAATGTTAAGAATGTTTCTGTCAAGGATCTCAAGCGTGGTTATGTTGCCTCAAACACCAAGGATGACCCAGCCAAGGAGGCTGCTAACTTCACATCTCAAGTGATTATCATGAATCACCCTGGCCAGATTGGAAATGGCTATGCCCCTGTGCTTGACTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAGCTTGTTACTAAGATTGACAGGCGTTCTGGTAAGGAGATCGAGAAGGAGCCCAAGTTCCTGAAGAATGGAGATGCTGGTATTATTAAGATGATTCCCACCAAGCCCATGGTTGTTGAGACTTTCTCTGAATATCCTCCACTTGGCCGTTTTGCTGTCAGAGATATGCGTCAAACTGTGGCTGTTGGGGTTATCAAGGGTGTGGAGAAGAAGGAACCTGGCACTGTTAAGATAACTAAGTCAGCAGCCAAGAAGAAATGA
Protein sequence

>MS.gene93388.t1

MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKSRYDEIVKEVSSYMKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTMKPGMVVTFAPTGLQTEVKSVEMHHESLTEALPGDNVGFNVKNVSVKDLKRGYVASNTKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKGVEKKEPGTVKITKSAAKKK