Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93636.t1 | XP_003619759.1 | 99.6 | 245 | 1 | 0 | 1 | 245 | 1 | 245 | 4.70E-133 | 483.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93636.t1 | Q9M060 | 87.8 | 245 | 30 | 0 | 1 | 245 | 1 | 245 | 5.9e-124 | 444.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93636.t1 | G7KPA2 | 99.6 | 245 | 1 | 0 | 1 | 245 | 1 | 245 | 3.4e-133 | 483.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene93636 | MS.gene39725 | PPI |
MS.gene27050 | MS.gene93636 | PPI |
MS.gene93636 | MS.gene64202 | PPI |
MS.gene93636 | MS.gene03315 | PPI |
MS.gene93636 | MS.gene57277 | PPI |
MS.gene93636 | MS.gene64000 | PPI |
MS.gene93636 | MS.gene48145 | PPI |
MS.gene019784 | MS.gene93636 | PPI |
MS.gene93636 | MS.gene03346 | PPI |
MS.gene24174 | MS.gene93636 | PPI |
MS.gene80364 | MS.gene93636 | PPI |
MS.gene93636 | MS.gene46845 | PPI |
MS.gene93636 | MS.gene85722 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93636.t1 | MTR_6g065670 | 99.592 | 245 | 1 | 0 | 1 | 245 | 1 | 245 | 0.0 | 497 |
MS.gene93636.t1 | MTR_1g077160 | 86.066 | 244 | 34 | 0 | 1 | 244 | 245 | 488 | 4.62e-158 | 447 |
MS.gene93636.t1 | MTR_1g077160 | 83.556 | 225 | 37 | 0 | 1 | 225 | 1 | 225 | 6.17e-140 | 402 |
MS.gene93636.t1 | MTR_6g065670 | 97.115 | 208 | 6 | 0 | 38 | 245 | 11 | 218 | 1.27e-147 | 410 |
MS.gene93636.t1 | MTR_4g020470 | 56.828 | 227 | 97 | 1 | 1 | 226 | 1 | 227 | 5.58e-88 | 260 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93636.t1 | AT3G55620 | 87.755 | 245 | 30 | 0 | 1 | 245 | 1 | 245 | 6.33e-166 | 458 |
MS.gene93636.t1 | AT2G39820 | 68.421 | 247 | 76 | 2 | 1 | 245 | 1 | 247 | 1.48e-124 | 353 |
Find 55 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGAGAATAATTGTGATAT+TGG | 0.268648 | 6.2:+70825548 | MS.gene93636:CDS |
TCACACATCCATAGAAGATT+TGG | 0.348637 | 6.2:+70827315 | MS.gene93636:CDS |
TACACTTCTTCAAGTTCCTT+TGG | 0.362500 | 6.2:+70827348 | MS.gene93636:CDS |
AAGTTCATCCAAATCTTCTA+TGG | 0.382133 | 6.2:-70827323 | None:intergenic |
AGTGTATTTGAATCTGAGTT+AGG | 0.408530 | 6.2:+70825763 | MS.gene93636:intron |
TCTCTCCAACAGAGGTGGTT+TGG | 0.412289 | 6.2:+70827198 | MS.gene93636:CDS |
ATCGTTGGTCGTCTTTGTGC+TGG | 0.443039 | 6.2:+70825829 | MS.gene93636:CDS |
CTCTGAACAACAACTTGATC+AGG | 0.445103 | 6.2:-70826553 | None:intergenic |
TCACTCACACCGATCTTGAC+AGG | 0.453197 | 6.2:+70826635 | MS.gene93636:CDS |
ACTACCTCTGTTAACTGTTC+CGG | 0.453614 | 6.2:-70827374 | None:intergenic |
ATAGCTGGCAATATTCTTGT+TGG | 0.456414 | 6.2:+70827163 | MS.gene93636:CDS |
CTTCAAGTTCCTTTGGTCGC+CGG | 0.479683 | 6.2:+70827355 | MS.gene93636:CDS |
GTGGTGAAGACATCTATTGC+TGG | 0.480770 | 6.2:+70825799 | MS.gene93636:CDS |
TATTGTATGGTTGCCATTGG+AGG | 0.485440 | 6.2:+70825596 | MS.gene93636:CDS |
GAGATAATTGCAGATGTTCT+CGG | 0.486363 | 6.2:+70827118 | MS.gene93636:CDS |
TTCTGTGCTCTCTCCAACAG+AGG | 0.487293 | 6.2:+70827190 | MS.gene93636:CDS |
CCTTGATCTGTGGTGGTATG+AGG | 0.488742 | 6.2:-70826045 | None:intergenic |
ACTCACCAATGGCTATTGTA+TGG | 0.495688 | 6.2:+70825583 | MS.gene93636:CDS |
ACTCACCAAACCACCTCTGT+TGG | 0.499764 | 6.2:-70827203 | None:intergenic |
CCTCATACCACCACAGATCA+AGG | 0.502719 | 6.2:+70826045 | MS.gene93636:CDS |
GAGGCTCTGAAAGCTTCTAC+AGG | 0.505269 | 6.2:+70825615 | MS.gene93636:CDS |
GGTAGTGAAGTGATAGGTGC+TGG | 0.508313 | 6.2:+70827391 | MS.gene93636:CDS |
GCAATAGATGTCTTCACCAC+AGG | 0.510708 | 6.2:-70825796 | None:intergenic |
GGCTATTGTATGGTTGCCAT+TGG | 0.513966 | 6.2:+70825593 | MS.gene93636:CDS |
CTGGAATGATAGTTAACGAT+TGG | 0.523514 | 6.2:+70827410 | MS.gene93636:CDS |
AACAAGAATATTGCCAGCTA+TGG | 0.529381 | 6.2:-70827161 | None:intergenic |
AACAGAGGTAGTGAAGTGAT+AGG | 0.536192 | 6.2:+70827385 | MS.gene93636:CDS |
TGTGCTCTCTCCAACAGAGG+TGG | 0.541463 | 6.2:+70827193 | MS.gene93636:CDS |
GTCTCACTTACTAGTTGCCA+TGG | 0.548761 | 6.2:-70825416 | None:intergenic |
CTGATCAAGTTGTTGTTCAG+AGG | 0.557204 | 6.2:+70826554 | MS.gene93636:CDS |
ATTGCTGGCACCCGCATCGT+TGG | 0.559296 | 6.2:+70825814 | MS.gene93636:CDS |
ACAAAGACGACCAACGATGC+GGG | 0.560349 | 6.2:-70825824 | None:intergenic |
GGCAACCATACAATAGCCAT+TGG | 0.578367 | 6.2:-70825588 | None:intergenic |
AGACAATACCCTGTCAAGAT+CGG | 0.580796 | 6.2:-70826644 | None:intergenic |
CACTCACACCGATCTTGACA+GGG | 0.591246 | 6.2:+70826636 | MS.gene93636:CDS |
TTAACTGTTCCGGCGACCAA+AGG | 0.594549 | 6.2:-70827364 | None:intergenic |
AACAGAGAGTTCTGTTGCCG+TGG | 0.602246 | 6.2:-70827455 | None:intergenic |
TGGTGGTATGAGGCAAGAGA+AGG | 0.604750 | 6.2:-70826035 | None:intergenic |
CAATAGATGTCTTCACCACA+GGG | 0.605043 | 6.2:-70825795 | None:intergenic |
GGAATTACCTTGATCTGTGG+TGG | 0.608310 | 6.2:-70826052 | None:intergenic |
TAACTCGTAGGAAACAAGAA+TGG | 0.608528 | 6.2:+70826012 | MS.gene93636:intron |
ATCTCATCGACGATGACACT+AGG | 0.609544 | 6.2:-70827511 | None:intergenic |
GTGTCATCGTCGATGAGATG+AGG | 0.626388 | 6.2:+70827515 | MS.gene93636:CDS |
GTGTTCTCTAAACTCACCAA+TGG | 0.639959 | 6.2:+70825572 | MS.gene93636:CDS |
ATAGGAATTACCTTGATCTG+TGG | 0.648429 | 6.2:-70826055 | None:intergenic |
CGGTGTGAGTGAGAGCCACA+TGG | 0.649183 | 6.2:-70826624 | None:intergenic |
GAAGCTTTCAGAGCCTCCAA+TGG | 0.650732 | 6.2:-70825609 | None:intergenic |
CACAAAGACGACCAACGATG+CGG | 0.651353 | 6.2:-70825825 | None:intergenic |
ATAATTTGTTCAGGAGACGG+AGG | 0.652617 | 6.2:+70827096 | MS.gene93636:intron |
AAATCTTCTATGGATGTGTG+AGG | 0.682850 | 6.2:-70827313 | None:intergenic |
GTATTTGAATCTGAGTTAGG+TGG | 0.687187 | 6.2:+70825766 | MS.gene93636:CDS |
TATAGCATGTAACGACCATG+TGG | 0.694867 | 6.2:+70826609 | MS.gene93636:CDS |
GTCGCCGGAACAGTTAACAG+AGG | 0.713608 | 6.2:+70827370 | MS.gene93636:CDS |
GTTAGGTGGTGTTATCCCTG+TGG | 0.725866 | 6.2:+70825780 | MS.gene93636:CDS |
AATCTTCTATGGATGTGTGA+GGG | 0.726663 | 6.2:-70827312 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTACTAAATAAAGTAATA+TGG | + | chr6.2:70825730-70825749 | MS.gene93636:intron | 10.0% |
!!! | TATTATATGTTGATTATTTT+TGG | + | chr6.2:70826081-70826100 | MS.gene93636:intron | 10.0% |
!! | AAATGGTTATGATTTAAAAA+TGG | - | chr6.2:70825963-70825982 | None:intergenic | 15.0% |
!! | AATCAACATATAATAACAAT+AGG | - | chr6.2:70826076-70826095 | None:intergenic | 15.0% |
!! | ATAAAGGAAAAAATATTGAA+AGG | - | chr6.2:70826353-70826372 | None:intergenic | 15.0% |
!! | ATGGTTAAAATTATAAAACA+AGG | - | chr6.2:70826869-70826888 | None:intergenic | 15.0% |
!! | TGGTTAAAATTATAAAACAA+GGG | - | chr6.2:70826868-70826887 | None:intergenic | 15.0% |
!! | TTACTATATTGAATGATTAT+TGG | + | chr6.2:70825507-70825526 | MS.gene93636:intron | 15.0% |
!!! | GAAAAAAGTATGAATTTTAA+GGG | - | chr6.2:70827245-70827264 | None:intergenic | 15.0% |
!! | AAATACAATCAATACCATAT+TGG | - | chr6.2:70826489-70826508 | None:intergenic | 20.0% |
!! | AACTAATGAAAATAAGTTCT+TGG | + | chr6.2:70825654-70825673 | MS.gene93636:intron | 20.0% |
!! | ACTAATGAAAATAAGTTCTT+GGG | + | chr6.2:70825655-70825674 | MS.gene93636:intron | 20.0% |
!! | ATCAATATCAGCAAAAATAA+AGG | - | chr6.2:70826369-70826388 | None:intergenic | 20.0% |
!! | ATTAACAGTTATTCATGTTT+AGG | + | chr6.2:70826699-70826718 | MS.gene93636:intron | 20.0% |
!! | TGAATATAAGAGATGTATAA+AGG | - | chr6.2:70827069-70827088 | None:intergenic | 20.0% |
!! | TTTGAGAATAATTGTGATAT+TGG | + | chr6.2:70825548-70825567 | MS.gene93636:CDS | 20.0% |
!!! | ATATAGTTTGAAGCTATAAT+GGG | - | chr6.2:70827043-70827062 | None:intergenic | 20.0% |
!!! | CAATTTAAGTTACTTGAATT+TGG | + | chr6.2:70825679-70825698 | MS.gene93636:intron | 20.0% |
!!! | GATTGAGTTGTTAAAATTTA+TGG | - | chr6.2:70826838-70826857 | None:intergenic | 20.0% |
!!! | GGAAAAAAGTATGAATTTTA+AGG | - | chr6.2:70827246-70827265 | None:intergenic | 20.0% |
!!! | TTTTGTTATGTTCATAGAAA+CGG | - | chr6.2:70826259-70826278 | None:intergenic | 20.0% |
! | AAATTCTCTATGATTTAGGA+TGG | + | chr6.2:70826415-70826434 | MS.gene93636:intron | 25.0% |
! | AATCTCTCATTTATAGAGTA+GGG | + | chr6.2:70826979-70826998 | MS.gene93636:intron | 25.0% |
! | AATGAAAAGGTAAGTTAGTT+AGG | - | chr6.2:70825993-70826012 | None:intergenic | 25.0% |
! | AATGTTGTTGAATAAGGAAA+CGG | + | chr6.2:70826768-70826787 | MS.gene93636:intron | 25.0% |
! | AATTACAAATGTGTTCGAAT+AGG | - | chr6.2:70826143-70826162 | None:intergenic | 25.0% |
! | AGAAGAAAAATTATCTGCTT+TGG | + | chr6.2:70826579-70826598 | MS.gene93636:CDS | 25.0% |
! | GAAGAAAAATTATCTGCTTT+GGG | + | chr6.2:70826580-70826599 | MS.gene93636:CDS | 25.0% |
! | GAATAACTGTTAATAAGAGA+GGG | - | chr6.2:70826693-70826712 | None:intergenic | 25.0% |
! | GTACAAATGAAAACATGTTA+CGG | - | chr6.2:70826395-70826414 | None:intergenic | 25.0% |
! | GTACAAATTCTCTATGATTT+AGG | + | chr6.2:70826411-70826430 | MS.gene93636:intron | 25.0% |
! | GTGAAACATAAGATACAAAA+GGG | - | chr6.2:70826467-70826486 | None:intergenic | 25.0% |
! | TAATCTCTCATTTATAGAGT+AGG | + | chr6.2:70826978-70826997 | MS.gene93636:intron | 25.0% |
! | TATCTTATGTTTCACCAATA+TGG | + | chr6.2:70826472-70826491 | MS.gene93636:intron | 25.0% |
! | TATGTTAATATGATGTAGCA+TGG | + | chr6.2:70826117-70826136 | MS.gene93636:intron | 25.0% |
! | TGAAACATAAGATACAAAAG+GGG | - | chr6.2:70826466-70826485 | None:intergenic | 25.0% |
! | TGAATAACTGTTAATAAGAG+AGG | - | chr6.2:70826694-70826713 | None:intergenic | 25.0% |
!! | CAAACAGTTTGAAATTGTTA+TGG | + | chr6.2:70825705-70825724 | MS.gene93636:intron | 25.0% |
!! | GATATAGTTTGAAGCTATAA+TGG | - | chr6.2:70827044-70827063 | None:intergenic | 25.0% |
!! | TTTGTTATGTTCATAGAAAC+GGG | - | chr6.2:70826258-70826277 | None:intergenic | 25.0% |
!!! | CATTGTGAAATAATTTGTTC+AGG | + | chr6.2:70827087-70827106 | MS.gene93636:intron | 25.0% |
!!! | TGGTATTGATTGTATTTTCA+TGG | + | chr6.2:70826492-70826511 | MS.gene93636:intron | 25.0% |
AAGACCAACAAAACTCTATA+AGG | - | chr6.2:70826916-70826935 | None:intergenic | 30.0% | |
AAGTTCATCCAAATCTTCTA+TGG | - | chr6.2:70827326-70827345 | None:intergenic | 30.0% | |
AGCACAAATGTTGTTGAATA+AGG | + | chr6.2:70826762-70826781 | MS.gene93636:intron | 30.0% | |
AGTGTATTTGAATCTGAGTT+AGG | + | chr6.2:70825763-70825782 | MS.gene93636:intron | 30.0% | |
ATAAGATCTTCAGAGGAAAA+AGG | - | chr6.2:70826167-70826186 | None:intergenic | 30.0% | |
ATCTCTCATTTATAGAGTAG+GGG | + | chr6.2:70826980-70826999 | MS.gene93636:intron | 30.0% | |
GAAACATAAGATACAAAAGG+GGG | - | chr6.2:70826465-70826484 | None:intergenic | 30.0% | |
GGTGAAACATAAGATACAAA+AGG | - | chr6.2:70826468-70826487 | None:intergenic | 30.0% | |
GTTAGTTAGGTACGATAAAA+TGG | - | chr6.2:70825980-70825999 | None:intergenic | 30.0% | |
TGATCAAAAGACAGTTTAGA+TGG | - | chr6.2:70827267-70827286 | None:intergenic | 30.0% | |
TTGTTATGTTCATAGAAACG+GGG | - | chr6.2:70826257-70826276 | None:intergenic | 30.0% | |
TTTCCTACGAGTTAATGAAA+AGG | - | chr6.2:70826006-70826025 | None:intergenic | 30.0% | |
! | CAGTTATTCATGTTTAGGAT+TGG | + | chr6.2:70826704-70826723 | MS.gene93636:intron | 30.0% |
! | TTACCTTTTCATTAACTCGT+AGG | + | chr6.2:70826000-70826019 | MS.gene93636:intron | 30.0% |
!! | AGAACCTTATAGAGTTTTGT+TGG | + | chr6.2:70826909-70826928 | MS.gene93636:intron | 30.0% |
!! | GAAATAATTTGTTCAGGAGA+CGG | + | chr6.2:70827093-70827112 | MS.gene93636:intron | 30.0% |
!!! | AATGATTATTGGTTTTCTGC+AGG | + | chr6.2:70825518-70825537 | MS.gene93636:intron | 30.0% |
AAACATGACAAAACCAACTC+AGG | - | chr6.2:70825906-70825925 | None:intergenic | 35.0% | |
AAATCTTCTATGGATGTGTG+AGG | - | chr6.2:70827316-70827335 | None:intergenic | 35.0% | |
AACAAGAATATTGCCAGCTA+TGG | - | chr6.2:70827164-70827183 | None:intergenic | 35.0% | |
AAGGAATCAATAGCGAATGA+GGG | - | chr6.2:70825869-70825888 | None:intergenic | 35.0% | |
AATCTTCTATGGATGTGTGA+GGG | - | chr6.2:70827315-70827334 | None:intergenic | 35.0% | |
ATAGCTGGCAATATTCTTGT+TGG | + | chr6.2:70827163-70827182 | MS.gene93636:CDS | 35.0% | |
ATAGGAATTACCTTGATCTG+TGG | - | chr6.2:70826058-70826077 | None:intergenic | 35.0% | |
CAGACAACAATCAGAATCAT+TGG | - | chr6.2:70826212-70826231 | None:intergenic | 35.0% | |
CTGGAATGATAGTTAACGAT+TGG | + | chr6.2:70827410-70827429 | MS.gene93636:CDS | 35.0% | |
GAGATAATTGCAGATGTTCT+CGG | + | chr6.2:70827118-70827137 | MS.gene93636:CDS | 35.0% | |
GTATTTGAATCTGAGTTAGG+TGG | + | chr6.2:70825766-70825785 | MS.gene93636:CDS | 35.0% | |
GTTTGACATAAGATCTTCAG+AGG | - | chr6.2:70826174-70826193 | None:intergenic | 35.0% | |
TAACTCGTAGGAAACAAGAA+TGG | + | chr6.2:70826012-70826031 | MS.gene93636:intron | 35.0% | |
TAAGGAATCAATAGCGAATG+AGG | - | chr6.2:70825870-70825889 | None:intergenic | 35.0% | |
TCACACATCCATAGAAGATT+TGG | + | chr6.2:70827315-70827334 | MS.gene93636:CDS | 35.0% | |
! | AACGATTGGACATCATTTTG+TGG | + | chr6.2:70827424-70827443 | MS.gene93636:CDS | 35.0% |
! | TACACTTCTTCAAGTTCCTT+TGG | + | chr6.2:70827348-70827367 | MS.gene93636:CDS | 35.0% |
! | TTGGACATCATTTTGTGGTT+CGG | + | chr6.2:70827429-70827448 | MS.gene93636:CDS | 35.0% |
!! | CATTCGCTATTGATTCCTTA+AGG | + | chr6.2:70825870-70825889 | MS.gene93636:intron | 35.0% |
!!! | TGAGAGTGTTTTCAAGTTGA+GGG | + | chr6.2:70827480-70827499 | MS.gene93636:CDS | 35.0% |
!!! | TTGAGAGTGTTTTCAAGTTG+AGG | + | chr6.2:70827479-70827498 | MS.gene93636:CDS | 35.0% |
AACAGAGGTAGTGAAGTGAT+AGG | + | chr6.2:70827385-70827404 | MS.gene93636:CDS | 40.0% | |
ACTACCTCTGTTAACTGTTC+CGG | - | chr6.2:70827377-70827396 | None:intergenic | 40.0% | |
ACTCACCAATGGCTATTGTA+TGG | + | chr6.2:70825583-70825602 | MS.gene93636:CDS | 40.0% | |
AGACAATACCCTGTCAAGAT+CGG | - | chr6.2:70826647-70826666 | None:intergenic | 40.0% | |
ATTGCGATTTGTGATGCATG+TGG | + | chr6.2:70826952-70826971 | MS.gene93636:intron | 40.0% | |
CAATAGATGTCTTCACCACA+GGG | - | chr6.2:70825798-70825817 | None:intergenic | 40.0% | |
CATAGTCATACACATGATGC+AGG | + | chr6.2:70827285-70827304 | MS.gene93636:intron | 40.0% | |
CTCTGAACAACAACTTGATC+AGG | - | chr6.2:70826556-70826575 | None:intergenic | 40.0% | |
GTGTTCTCTAAACTCACCAA+TGG | + | chr6.2:70825572-70825591 | MS.gene93636:CDS | 40.0% | |
TATAGCATGTAACGACCATG+TGG | + | chr6.2:70826609-70826628 | MS.gene93636:CDS | 40.0% | |
TATTGTATGGTTGCCATTGG+AGG | + | chr6.2:70825596-70825615 | MS.gene93636:CDS | 40.0% | |
TCAGGAATGGATACTCCTTA+AGG | - | chr6.2:70825888-70825907 | None:intergenic | 40.0% | |
TGACAAAACCAACTCAGGAA+TGG | - | chr6.2:70825901-70825920 | None:intergenic | 40.0% | |
TTATCAACGCTCTAGTCTCT+AGG | + | chr6.2:70826325-70826344 | MS.gene93636:intron | 40.0% | |
! | AGCAGAGAACTGAAGTACTA+TGG | - | chr6.2:70826888-70826907 | None:intergenic | 40.0% |
! | CTGATCAAGTTGTTGTTCAG+AGG | + | chr6.2:70826554-70826573 | MS.gene93636:CDS | 40.0% |
! | TTCTCGGAGTAGAAGTTTTC+AGG | + | chr6.2:70827134-70827153 | MS.gene93636:CDS | 40.0% |
!! | ATAATTTGTTCAGGAGACGG+AGG | + | chr6.2:70827096-70827115 | MS.gene93636:intron | 40.0% |
!! | CGTGTGTGTGTGTTACTTAA+TGG | + | chr6.2:70825460-70825479 | MS.gene93636:intron | 40.0% |
ATCTCATCGACGATGACACT+AGG | - | chr6.2:70827514-70827533 | None:intergenic | 45.0% | |
GCAATAGATGTCTTCACCAC+AGG | - | chr6.2:70825799-70825818 | None:intergenic | 45.0% | |
GGAATTACCTTGATCTGTGG+TGG | - | chr6.2:70826055-70826074 | None:intergenic | 45.0% | |
GGCAACCATACAATAGCCAT+TGG | - | chr6.2:70825591-70825610 | None:intergenic | 45.0% | |
GGCTATTGTATGGTTGCCAT+TGG | + | chr6.2:70825593-70825612 | MS.gene93636:CDS | 45.0% | |
GTGGTGAAGACATCTATTGC+TGG | + | chr6.2:70825799-70825818 | MS.gene93636:CDS | 45.0% | |
!! | AGGAGTATCCATTCCTGAGT+TGG | + | chr6.2:70825890-70825909 | MS.gene93636:intron | 45.0% |
!! | ATTTTGTGGTTCGGACACCA+CGG | + | chr6.2:70827438-70827457 | MS.gene93636:CDS | 45.0% |
AACAGAGAGTTCTGTTGCCG+TGG | - | chr6.2:70827458-70827477 | None:intergenic | 50.0% | |
ACAAAGACGACCAACGATGC+GGG | - | chr6.2:70825827-70825846 | None:intergenic | 50.0% | |
ACTCACCAAACCACCTCTGT+TGG | - | chr6.2:70827206-70827225 | None:intergenic | 50.0% | |
ATCGTTGGTCGTCTTTGTGC+TGG | + | chr6.2:70825829-70825848 | MS.gene93636:CDS | 50.0% | |
CACAAAGACGACCAACGATG+CGG | - | chr6.2:70825828-70825847 | None:intergenic | 50.0% | |
CACTCACACCGATCTTGACA+GGG | + | chr6.2:70826636-70826655 | MS.gene93636:CDS | 50.0% | |
CCTCATACCACCACAGATCA+AGG | + | chr6.2:70826045-70826064 | MS.gene93636:CDS | 50.0% | |
CCTTGATCTGTGGTGGTATG+AGG | - | chr6.2:70826048-70826067 | None:intergenic | 50.0% | |
GAAGCTTTCAGAGCCTCCAA+TGG | - | chr6.2:70825612-70825631 | None:intergenic | 50.0% | |
GGTAGTGAAGTGATAGGTGC+TGG | + | chr6.2:70827391-70827410 | MS.gene93636:CDS | 50.0% | |
GTGTCATCGTCGATGAGATG+AGG | + | chr6.2:70827515-70827534 | MS.gene93636:CDS | 50.0% | |
TCACTCACACCGATCTTGAC+AGG | + | chr6.2:70826635-70826654 | MS.gene93636:CDS | 50.0% | |
TCTCTCCAACAGAGGTGGTT+TGG | + | chr6.2:70827198-70827217 | MS.gene93636:CDS | 50.0% | |
TGGTGGTATGAGGCAAGAGA+AGG | - | chr6.2:70826038-70826057 | None:intergenic | 50.0% | |
TTAACTGTTCCGGCGACCAA+AGG | - | chr6.2:70827367-70827386 | None:intergenic | 50.0% | |
TTCTGTGCTCTCTCCAACAG+AGG | + | chr6.2:70827190-70827209 | MS.gene93636:CDS | 50.0% | |
! | CTTCAAGTTCCTTTGGTCGC+CGG | + | chr6.2:70827355-70827374 | MS.gene93636:CDS | 50.0% |
!! | GAGGCTCTGAAAGCTTCTAC+AGG | + | chr6.2:70825615-70825634 | MS.gene93636:CDS | 50.0% |
!! | GTTAGGTGGTGTTATCCCTG+TGG | + | chr6.2:70825780-70825799 | MS.gene93636:CDS | 50.0% |
!! | GTTTTCAGGCAGACCATAGC+TGG | + | chr6.2:70827148-70827167 | MS.gene93636:CDS | 50.0% |
GTCGCCGGAACAGTTAACAG+AGG | + | chr6.2:70827370-70827389 | MS.gene93636:CDS | 55.0% | |
TGTGCTCTCTCCAACAGAGG+TGG | + | chr6.2:70827193-70827212 | MS.gene93636:CDS | 55.0% | |
ATTGCTGGCACCCGCATCGT+TGG | + | chr6.2:70825814-70825833 | MS.gene93636:CDS | 60.0% | |
CGGTGTGAGTGAGAGCCACA+TGG | - | chr6.2:70826627-70826646 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 70825418 | 70827564 | 70825418 | ID=MS.gene93636 |
chr6.2 | mRNA | 70825418 | 70827564 | 70825418 | ID=MS.gene93636.t1;Parent=MS.gene93636 |
chr6.2 | exon | 70825418 | 70825427 | 70825418 | ID=MS.gene93636.t1.exon1;Parent=MS.gene93636.t1 |
chr6.2 | CDS | 70825418 | 70825427 | 70825418 | ID=cds.MS.gene93636.t1;Parent=MS.gene93636.t1 |
chr6.2 | exon | 70825540 | 70825636 | 70825540 | ID=MS.gene93636.t1.exon2;Parent=MS.gene93636.t1 |
chr6.2 | CDS | 70825540 | 70825636 | 70825540 | ID=cds.MS.gene93636.t1;Parent=MS.gene93636.t1 |
chr6.2 | exon | 70825765 | 70825850 | 70825765 | ID=MS.gene93636.t1.exon3;Parent=MS.gene93636.t1 |
chr6.2 | CDS | 70825765 | 70825850 | 70825765 | ID=cds.MS.gene93636.t1;Parent=MS.gene93636.t1 |
chr6.2 | exon | 70826022 | 70826066 | 70826022 | ID=MS.gene93636.t1.exon4;Parent=MS.gene93636.t1 |
chr6.2 | CDS | 70826022 | 70826066 | 70826022 | ID=cds.MS.gene93636.t1;Parent=MS.gene93636.t1 |
chr6.2 | exon | 70826527 | 70826657 | 70826527 | ID=MS.gene93636.t1.exon5;Parent=MS.gene93636.t1 |
chr6.2 | CDS | 70826527 | 70826657 | 70826527 | ID=cds.MS.gene93636.t1;Parent=MS.gene93636.t1 |
chr6.2 | exon | 70827109 | 70827219 | 70827109 | ID=MS.gene93636.t1.exon6;Parent=MS.gene93636.t1 |
chr6.2 | CDS | 70827109 | 70827219 | 70827109 | ID=cds.MS.gene93636.t1;Parent=MS.gene93636.t1 |
chr6.2 | exon | 70827307 | 70827564 | 70827307 | ID=MS.gene93636.t1.exon7;Parent=MS.gene93636.t1 |
chr6.2 | CDS | 70827307 | 70827564 | 70827307 | ID=cds.MS.gene93636.t1;Parent=MS.gene93636.t1 |
Gene Sequence |
Protein sequence |