Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95024.t1 | XP_013456230.1 | 96.9 | 588 | 18 | 0 | 1 | 588 | 1 | 588 | 0.00E+00 | 1122.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95024.t1 | Q9LXU9 | 52.1 | 589 | 216 | 15 | 24 | 586 | 12 | 560 | 1.1e-149 | 531.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95024.t1 | A0A072ULJ6 | 96.9 | 588 | 18 | 0 | 1 | 588 | 1 | 588 | 0.0e+00 | 1122.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051582 | MS.gene95024 | 0.807089 | 5.99E-50 | -1.69E-46 |
| MS.gene053971 | MS.gene95024 | 0.8121 | 5.02E-51 | -1.69E-46 |
| MS.gene055370 | MS.gene95024 | 0.850714 | 1.42E-60 | -1.69E-46 |
| MS.gene056513 | MS.gene95024 | 0.807033 | 6.16E-50 | -1.69E-46 |
| MS.gene056633 | MS.gene95024 | 0.810145 | 1.33E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene95024 | 0.809253 | 2.07E-50 | -1.69E-46 |
| MS.gene058746 | MS.gene95024 | 0.80343 | 3.50E-49 | -1.69E-46 |
| MS.gene059512 | MS.gene95024 | 0.816532 | 5.27E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95024.t1 | MTR_4g066010 | 96.939 | 588 | 18 | 0 | 1 | 588 | 1 | 588 | 0.0 | 1185 |
| MS.gene95024.t1 | MTR_2g098420 | 68.491 | 603 | 141 | 18 | 1 | 577 | 1 | 580 | 0.0 | 756 |
| MS.gene95024.t1 | MTR_8g106210 | 38.889 | 324 | 176 | 4 | 265 | 584 | 150 | 455 | 4.88e-71 | 236 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95024.t1 | AT5G12900 | 52.122 | 589 | 216 | 15 | 24 | 586 | 12 | 560 | 0.0 | 558 |
| MS.gene95024.t1 | AT1G12330 | 34.459 | 444 | 247 | 11 | 150 | 583 | 63 | 472 | 5.14e-69 | 232 |
Find 121 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGACGGTCAATGAATTT+TGG | 0.121316 | 4.4:+40118879 | None:intergenic |
| TCCTCAGATTCTGCTCTATT+TGG | 0.161491 | 4.4:+40119467 | None:intergenic |
| GCATTACCACTACTCTAAAT+TGG | 0.198308 | 4.4:-40118731 | MS.gene95024:CDS |
| TTTCTTCAATGTTGTTTATA+AGG | 0.223578 | 4.4:+40119063 | None:intergenic |
| TCTCGTCATTCGTTGCTCTT+AGG | 0.269047 | 4.4:-40118839 | MS.gene95024:CDS |
| TTGCTTGGACCCTGTGACCT+TGG | 0.272333 | 4.4:+40118549 | None:intergenic |
| CAGAACTGCCTTTGAGTACT+TGG | 0.306166 | 4.4:+40118977 | None:intergenic |
| TGCTTGGACCCTGTGACCTT+GGG | 0.308422 | 4.4:+40118550 | None:intergenic |
| ATGTTAAAGATAGGGTATTA+AGG | 0.310637 | 4.4:-40118497 | MS.gene95024:CDS |
| CTTACTCCTGTAGCTTTCAT+TGG | 0.318767 | 4.4:+40119712 | None:intergenic |
| AACTACAAGACAGGAAATTA+AGG | 0.323447 | 4.4:-40120941 | MS.gene95024:CDS |
| GATTTATGAAAGCTTCAAAA+TGG | 0.324347 | 4.4:+40118952 | None:intergenic |
| ACAAGAGCCGGTTACGGATT+TGG | 0.324635 | 4.4:+40119769 | None:intergenic |
| AACTCACTAGTTATGATTGC+AGG | 0.324702 | 4.4:+40119635 | None:intergenic |
| CAAGAGATGTGTGAGATTCT+AGG | 0.330314 | 4.4:+40119801 | None:intergenic |
| TTCTGAGATGCGATGTTCAT+TGG | 0.343847 | 4.4:-40119342 | MS.gene95024:CDS |
| TGAGAAACAGAGCGAGAAAC+AGG | 0.345072 | 4.4:+40120826 | None:intergenic |
| CCCAACTTTCAGATATTGTT+AGG | 0.351274 | 4.4:+40119924 | None:intergenic |
| AGTTGGGATGAAGGAGAATC+AGG | 0.354966 | 4.4:-40119908 | MS.gene95024:CDS |
| TAAGAGAAGAAACAGTTTAG+AGG | 0.360943 | 4.4:-40119693 | MS.gene95024:CDS |
| CCACTACTCTAAATTGGATT+AGG | 0.362270 | 4.4:-40118725 | MS.gene95024:CDS |
| TTAGGCATTTCGTGTGGTTC+TGG | 0.364717 | 4.4:+40119942 | None:intergenic |
| AGCTCTTAGTTCCACAGCTT+TGG | 0.364810 | 4.4:+40120909 | None:intergenic |
| ACCATGATCTTAACTTTGCT+TGG | 0.370606 | 4.4:+40118534 | None:intergenic |
| GAATTTAGAGACAGCTTATA+CGG | 0.371940 | 4.4:+40118999 | None:intergenic |
| AATCTTTGATCATCGCTATA+TGG | 0.373925 | 4.4:-40118583 | MS.gene95024:CDS |
| TGCAGGGTTACATTTATTGC+AGG | 0.374680 | 4.4:+40119652 | None:intergenic |
| CTCTAAATTGGATTAGGCCT+TGG | 0.377636 | 4.4:-40118719 | MS.gene95024:CDS |
| AAACCAGTGTACAAGATTAC+AGG | 0.381028 | 4.4:-40119874 | MS.gene95024:CDS |
| ATTCTCACAGGGGTGAAAAC+AGG | 0.386116 | 4.4:+40120784 | None:intergenic |
| GCCTAACAATATCTGAAAGT+TGG | 0.386328 | 4.4:-40119925 | MS.gene95024:CDS |
| TGATTTCGTGGTTGTTTCCT+CGG | 0.394790 | 4.4:-40119520 | MS.gene95024:CDS |
| ATCCCTGTAATCTTGTACAC+TGG | 0.401675 | 4.4:+40119871 | None:intergenic |
| CGTGGCAGGAACAACAATAT+TGG | 0.408732 | 4.4:+40119586 | None:intergenic |
| CCTAACAATATCTGAAAGTT+GGG | 0.413549 | 4.4:-40119924 | MS.gene95024:CDS |
| AGAATCTGAGGATGTTTCTC+TGG | 0.418993 | 4.4:-40119456 | MS.gene95024:CDS |
| GTTAAGATCATGGTTAATCC+AGG | 0.427966 | 4.4:-40118525 | MS.gene95024:CDS |
| TAAGGTGTAAGGTCCTTTGC+AGG | 0.436843 | 4.4:-40118479 | MS.gene95024:CDS |
| GCTTCTTCAAGCTTTCTTTG+TGG | 0.438315 | 4.4:-40118688 | MS.gene95024:CDS |
| TCTGAGATGCGATGTTCATT+GGG | 0.440475 | 4.4:-40119341 | MS.gene95024:CDS |
| GATAAACCAAGTTCAAGAAA+AGG | 0.442732 | 4.4:-40119851 | MS.gene95024:CDS |
| GATGACACCAAATCCGTAAC+CGG | 0.450685 | 4.4:-40119776 | MS.gene95024:CDS |
| GAGACAGAAGATGGAGTACT+TGG | 0.456731 | 4.4:-40119312 | MS.gene95024:CDS |
| AGATATGAGCCCAAGGTCAC+AGG | 0.461980 | 4.4:-40118559 | MS.gene95024:CDS |
| AAAGCTTGAAGAAGCTGCTC+AGG | 0.463394 | 4.4:+40118696 | None:intergenic |
| CTCCTGTAGCTTTCATTGGT+AGG | 0.467705 | 4.4:+40119716 | None:intergenic |
| CTGGAATGAAGTACTGAGAA+AGG | 0.467976 | 4.4:-40118808 | MS.gene95024:CDS |
| CAGAGAGGGAAATCAATTGA+TGG | 0.474699 | 4.4:-40119188 | MS.gene95024:CDS |
| GAATGAGGAAGTAATGATAG+AGG | 0.484289 | 4.4:-40119141 | MS.gene95024:CDS |
| ATAAACCAAGTTCAAGAAAA+GGG | 0.488864 | 4.4:-40119850 | MS.gene95024:CDS |
| GAATAGAGATGTGGCGTTGG+TGG | 0.489658 | 4.4:-40119369 | MS.gene95024:CDS |
| ATCATTACTTCCTCATTCAC+AGG | 0.490591 | 4.4:+40119146 | None:intergenic |
| TAGTTCCACAGCTTTGGCTA+TGG | 0.496028 | 4.4:+40120915 | None:intergenic |
| ATATCTGAAAGTTGGGATGA+AGG | 0.496923 | 4.4:-40119917 | MS.gene95024:CDS |
| ATCCCTTGCCTGCGTCTGCA+TGG | 0.501502 | 4.4:+40119250 | None:intergenic |
| AGATAGGGTATTAAGGTGTA+AGG | 0.504352 | 4.4:-40118490 | MS.gene95024:CDS |
| ATTTGCACAAGAGCCGGTTA+CGG | 0.506731 | 4.4:+40119763 | None:intergenic |
| AAATGCAATTCTCAAAGTCT+TGG | 0.511355 | 4.4:+40118919 | None:intergenic |
| CAATATTGTTGTTCCTGCCA+CGG | 0.511774 | 4.4:-40119585 | MS.gene95024:CDS |
| AGTCTGAAACGAAAAGCAAA+GGG | 0.516834 | 4.4:-40119544 | MS.gene95024:CDS |
| TATATGATTTGCACAAGAGC+CGG | 0.520360 | 4.4:+40119757 | None:intergenic |
| GGGAGAGTTGAGACAGAAGA+TGG | 0.523009 | 4.4:-40119321 | MS.gene95024:CDS |
| AAAGCAAAGGGGTGATTTCG+TGG | 0.524133 | 4.4:-40119532 | MS.gene95024:CDS |
| ATGACGAGAATTTCGCTTGG+CGG | 0.524799 | 4.4:+40118853 | None:intergenic |
| TGCAATCATAACTAGTGAGT+TGG | 0.525610 | 4.4:-40119633 | MS.gene95024:CDS |
| GACGAGTGGGAATCCGTGGC+AGG | 0.527984 | 4.4:+40119572 | None:intergenic |
| TTGCTCTTAGGAATTTGAGC+TGG | 0.530381 | 4.4:-40118827 | MS.gene95024:CDS |
| CCCTTAAAACTCCCAATGGT+GGG | 0.532372 | 4.4:+40118619 | None:intergenic |
| CACCTACCAATGAAAGCTAC+AGG | 0.535955 | 4.4:-40119718 | MS.gene95024:CDS |
| ACCCTTAAAACTCCCAATGG+TGG | 0.537328 | 4.4:+40118618 | None:intergenic |
| TGAAGAAGCTGCTCAGGCCA+AGG | 0.537390 | 4.4:+40118702 | None:intergenic |
| TCTCTGGTTCTCAAGGACAT+AGG | 0.537945 | 4.4:-40119440 | MS.gene95024:CDS |
| GGATGTTTCTCTGGTTCTCA+AGG | 0.538906 | 4.4:-40119447 | MS.gene95024:CDS |
| TCCAAGCAAAGTTAAGATCA+TGG | 0.542194 | 4.4:-40118535 | MS.gene95024:CDS |
| TTATGCTTCTTCTTTAACCG+AGG | 0.546831 | 4.4:+40119503 | None:intergenic |
| TCTAAATTCCAAGTACTCAA+AGG | 0.555958 | 4.4:-40118985 | MS.gene95024:CDS |
| CATAGGAATAATGTCGATTG+AGG | 0.560971 | 4.4:-40119423 | MS.gene95024:CDS |
| AATCCATGCAGACGCAGGCA+AGG | 0.561183 | 4.4:-40119253 | MS.gene95024:CDS |
| CCTAATCCAATTTAGAGTAG+TGG | 0.563144 | 4.4:+40118725 | None:intergenic |
| AAATTCAATGCCTGTGAATG+AGG | 0.569144 | 4.4:-40119156 | MS.gene95024:CDS |
| TCGCTTGGCGGTCTTCATGA+CGG | 0.569448 | 4.4:+40118865 | None:intergenic |
| CAGTCTGAAACGAAAAGCAA+AGG | 0.571815 | 4.4:-40119545 | MS.gene95024:CDS |
| AAACTCAGAAACTACAAGAC+AGG | 0.574537 | 4.4:-40120950 | MS.gene95024:CDS |
| TTAAGATCATGGTTAATCCA+GGG | 0.574929 | 4.4:-40118524 | MS.gene95024:CDS |
| GAGAAACAGAGCGAGAAACA+GGG | 0.575679 | 4.4:+40120827 | None:intergenic |
| CTGTGGATTTGTACCTGCAA+AGG | 0.576366 | 4.4:+40118466 | None:intergenic |
| TTCAGACTGAAACGACGAGT+GGG | 0.579873 | 4.4:+40119559 | None:intergenic |
| CGAGAATAGAGATGTGGCGT+TGG | 0.582736 | 4.4:-40119372 | MS.gene95024:CDS |
| ACTCACTAGTTATGATTGCA+GGG | 0.584367 | 4.4:+40119636 | None:intergenic |
| TCCAAATAGAGCAGAATCTG+AGG | 0.587725 | 4.4:-40119468 | MS.gene95024:CDS |
| TTGTGGCTGCAAAGTGCATG+TGG | 0.589553 | 4.4:-40118671 | MS.gene95024:CDS |
| CTATCTTTAACATAAAACCC+TGG | 0.589585 | 4.4:+40118507 | None:intergenic |
| CTAGTGAGTTGGAGAGTGCA+AGG | 0.589873 | 4.4:-40119622 | MS.gene95024:CDS |
| CTTCATGCTGCTTTAATGCG+AGG | 0.590460 | 4.4:-40120886 | MS.gene95024:CDS |
| TTCTCACAGGGGTGAAAACA+GGG | 0.591379 | 4.4:+40120785 | None:intergenic |
| TGGAATGAAGTACTGAGAAA+GGG | 0.593329 | 4.4:-40118807 | MS.gene95024:CDS |
| CGAATGACGAGAATTTCGCT+TGG | 0.594200 | 4.4:+40118850 | None:intergenic |
| GATATGAGCCCAAGGTCACA+GGG | 0.597366 | 4.4:-40118558 | MS.gene95024:CDS |
| ATCCATGCAGACGCAGGCAA+GGG | 0.597592 | 4.4:-40119252 | MS.gene95024:CDS |
| GAAACAATCCATGCAGACGC+AGG | 0.600891 | 4.4:-40119258 | MS.gene95024:CDS |
| TCAGTAATCTTCCTCAGAGA+GGG | 0.603053 | 4.4:-40119202 | MS.gene95024:CDS |
| TTCTGGTTGTACGATGCAAG+TGG | 0.603230 | 4.4:+40119959 | None:intergenic |
| AATGAGGAAGTAATGATAGA+GGG | 0.603683 | 4.4:-40119140 | MS.gene95024:CDS |
| AGGAGATAGAAACTTTGCGT+TGG | 0.604884 | 4.4:+40120852 | None:intergenic |
| AACCAGTGTACAAGATTACA+GGG | 0.611795 | 4.4:-40119873 | MS.gene95024:CDS |
| CTCAGTAATCTTCCTCAGAG+AGG | 0.618938 | 4.4:-40119203 | MS.gene95024:CDS |
| AAACGACGAGTGGGAATCCG+TGG | 0.621697 | 4.4:+40119568 | None:intergenic |
| TCAACCCTTAAAACTCCCAA+TGG | 0.624174 | 4.4:+40118615 | None:intergenic |
| ACAGAGCGAGAAACAGGGGA+AGG | 0.627334 | 4.4:+40120832 | None:intergenic |
| TCAATTGATTTCCCTCTCTG+AGG | 0.633408 | 4.4:+40119191 | None:intergenic |
| AGATGTGTGAGATTCTAGGT+TGG | 0.637680 | 4.4:+40119805 | None:intergenic |
| TTTCAGACTGAAACGACGAG+TGG | 0.641833 | 4.4:+40119558 | None:intergenic |
| AGAAACAGAGCGAGAAACAG+GGG | 0.648901 | 4.4:+40120828 | None:intergenic |
| AGCGAACGAGAATAGAGATG+TGG | 0.657156 | 4.4:-40119378 | MS.gene95024:CDS |
| GGTTGCCATAGCCAAAGCTG+TGG | 0.663368 | 4.4:-40120920 | MS.gene95024:CDS |
| ATATTGTTAGGCATTTCGTG+TGG | 0.667524 | 4.4:+40119936 | None:intergenic |
| AAAGGGATACTACTACCTTG+TGG | 0.671368 | 4.4:-40119833 | MS.gene95024:CDS |
| ATATGGAAGATATGAGCCCA+AGG | 0.672278 | 4.4:-40118566 | MS.gene95024:CDS |
| TCTGGTTGTACGATGCAAGT+GGG | 0.681776 | 4.4:+40119960 | None:intergenic |
| TCTAGGTTGGTAAAACCACA+AGG | 0.696108 | 4.4:+40119818 | None:intergenic |
| GTCTGAAACGAAAAGCAAAG+GGG | 0.723496 | 4.4:-40119543 | MS.gene95024:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGTTACTTTTGATT+TGG | - | chr4.4:40118786-40118805 | MS.gene95024:CDS | 15.0% |
| !!! | TTTTGAGAATAAATAAGATA+AGG | + | chr4.4:40119000-40119019 | None:intergenic | 15.0% |
| !! | AGAATAAATAAGATAAGGAA+AGG | + | chr4.4:40118995-40119014 | None:intergenic | 20.0% |
| !! | AGATAATAAACATCATCATT+AGG | + | chr4.4:40119139-40119158 | None:intergenic | 20.0% |
| !! | ATCAAGAAAAACAAAATTCA+AGG | + | chr4.4:40118713-40118732 | None:intergenic | 20.0% |
| !! | ATGAAACTACTAAACAAAAA+AGG | + | chr4.4:40119057-40119076 | None:intergenic | 20.0% |
| !! | TTTCTAAACATGAGAATTAT+TGG | - | chr4.4:40119461-40119480 | MS.gene95024:CDS | 20.0% |
| !!! | AATTGCATTTTTCAAAAGAA+CGG | - | chr4.4:40120555-40120574 | MS.gene95024:intron | 20.0% |
| !!! | GCATTTTCTCAAATTATTAT+TGG | + | chr4.4:40119282-40119301 | None:intergenic | 20.0% |
| !!! | TAAAAAGATAAATTTTGGAG+TGG | + | chr4.4:40119415-40119434 | None:intergenic | 20.0% |
| !!! | TTTATTCCTTGTTTATTGTT+TGG | - | chr4.4:40118921-40118940 | MS.gene95024:CDS | 20.0% |
| !!! | TTTCTTCAATGTTGTTTATA+AGG | + | chr4.4:40120401-40120420 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTCTTGATGAAAA+GGG | - | chr4.4:40118718-40118737 | MS.gene95024:CDS | 20.0% |
| !!! | TTTTGTTTTTCTTGATGAAA+AGG | - | chr4.4:40118717-40118736 | MS.gene95024:CDS | 20.0% |
| ! | AAAACTTTAACTCTCATTCT+AGG | + | chr4.4:40119031-40119050 | None:intergenic | 25.0% |
| ! | ATAAACCAAGTTCAAGAAAA+GGG | - | chr4.4:40119611-40119630 | MS.gene95024:CDS | 25.0% |
| ! | ATATTGATACAAATCTTCTG+AGG | + | chr4.4:40119203-40119222 | None:intergenic | 25.0% |
| ! | GATTTATGAAAGCTTCAAAA+TGG | + | chr4.4:40120512-40120531 | None:intergenic | 25.0% |
| ! | TGTTACTGTTATCATTGATA+GGG | - | chr4.4:40118831-40118850 | MS.gene95024:CDS | 25.0% |
| ! | TTGTTACTGTTATCATTGAT+AGG | - | chr4.4:40118830-40118849 | MS.gene95024:CDS | 25.0% |
| ! | TTTAGTAGTTTCATTGTCAT+GGG | - | chr4.4:40119063-40119082 | MS.gene95024:CDS | 25.0% |
| !! | AGTTCAAATTTTCTGTCAAT+GGG | + | chr4.4:40120431-40120450 | None:intergenic | 25.0% |
| !! | ATGTTAAAGATAGGGTATTA+AGG | - | chr4.4:40120964-40120983 | MS.gene95024:CDS | 25.0% |
| !!! | AGGGTTTTATGTTAAAGATA+GGG | - | chr4.4:40120956-40120975 | MS.gene95024:CDS | 25.0% |
| !!! | TTTTGAAGCTTTCATAAATC+AGG | - | chr4.4:40120512-40120531 | MS.gene95024:intron | 25.0% |
| AAAGAAAGAAATTCTCACAG+GGG | + | chr4.4:40118690-40118709 | None:intergenic | 30.0% | |
| AAATGCAATTCTCAAAGTCT+TGG | + | chr4.4:40120545-40120564 | None:intergenic | 30.0% | |
| AACTACAAGACAGGAAATTA+AGG | - | chr4.4:40118520-40118539 | MS.gene95024:CDS | 30.0% | |
| AATCTTTGATCATCGCTATA+TGG | - | chr4.4:40120878-40120897 | MS.gene95024:CDS | 30.0% | |
| AATGAGGAAGTAATGATAGA+GGG | - | chr4.4:40120321-40120340 | MS.gene95024:intron | 30.0% | |
| ATTTGTGACTTTATGAAGAG+CGG | - | chr4.4:40119221-40119240 | MS.gene95024:CDS | 30.0% | |
| CCTAACAATATCTGAAAGTT+GGG | - | chr4.4:40119537-40119556 | MS.gene95024:CDS | 30.0% | |
| CTATCTTTAACATAAAACCC+TGG | + | chr4.4:40120957-40120976 | None:intergenic | 30.0% | |
| GAAAGAAAGAAATTCTCACA+GGG | + | chr4.4:40118691-40118710 | None:intergenic | 30.0% | |
| GAATTTAGAGACAGCTTATA+CGG | + | chr4.4:40120465-40120484 | None:intergenic | 30.0% | |
| GATAAACCAAGTTCAAGAAA+AGG | - | chr4.4:40119610-40119629 | MS.gene95024:CDS | 30.0% | |
| GTTTAGTAGTTTCATTGTCA+TGG | - | chr4.4:40119062-40119081 | MS.gene95024:CDS | 30.0% | |
| TAAGAGAAGAAACAGTTTAG+AGG | - | chr4.4:40119768-40119787 | MS.gene95024:CDS | 30.0% | |
| TACCAACCAAACAATAAACA+AGG | + | chr4.4:40118930-40118949 | None:intergenic | 30.0% | |
| TCTAAATTCCAAGTACTCAA+AGG | - | chr4.4:40120476-40120495 | MS.gene95024:intron | 30.0% | |
| TTAAATGTAACCATGTGTGT+TGG | - | chr4.4:40119307-40119326 | MS.gene95024:CDS | 30.0% | |
| TTAAGATCATGGTTAATCCA+GGG | - | chr4.4:40120937-40120956 | MS.gene95024:CDS | 30.0% | |
| ! | GAGTTCAAATTTTCTGTCAA+TGG | + | chr4.4:40120432-40120451 | None:intergenic | 30.0% |
| ! | TTCCTTGTTTATTGTTTGGT+TGG | - | chr4.4:40118925-40118944 | MS.gene95024:CDS | 30.0% |
| !! | CAGGGTTTTATGTTAAAGAT+AGG | - | chr4.4:40120955-40120974 | MS.gene95024:CDS | 30.0% |
| !!! | ATAAATTTTGGAGTGGAAGT+TGG | + | chr4.4:40119408-40119427 | None:intergenic | 30.0% |
| !!! | TAAATTTTGGAGTGGAAGTT+GGG | + | chr4.4:40119407-40119426 | None:intergenic | 30.0% |
| AAACCAGTGTACAAGATTAC+AGG | - | chr4.4:40119587-40119606 | MS.gene95024:CDS | 35.0% | |
| AAACTCAGAAACTACAAGAC+AGG | - | chr4.4:40118511-40118530 | MS.gene95024:CDS | 35.0% | |
| AAATTCAATGCCTGTGAATG+AGG | - | chr4.4:40120305-40120324 | MS.gene95024:intron | 35.0% | |
| AACCAGTGTACAAGATTACA+GGG | - | chr4.4:40119588-40119607 | MS.gene95024:CDS | 35.0% | |
| AACTCACTAGTTATGATTGC+AGG | + | chr4.4:40119829-40119848 | None:intergenic | 35.0% | |
| ACCATGATCTTAACTTTGCT+TGG | + | chr4.4:40120930-40120949 | None:intergenic | 35.0% | |
| ACTCACTAGTTATGATTGCA+GGG | + | chr4.4:40119828-40119847 | None:intergenic | 35.0% | |
| ATATCTGAAAGTTGGGATGA+AGG | - | chr4.4:40119544-40119563 | MS.gene95024:CDS | 35.0% | |
| ATATTGTTAGGCATTTCGTG+TGG | + | chr4.4:40119528-40119547 | None:intergenic | 35.0% | |
| ATCATTACTTCCTCATTCAC+AGG | + | chr4.4:40120318-40120337 | None:intergenic | 35.0% | |
| CCACTACTCTAAATTGGATT+AGG | - | chr4.4:40120736-40120755 | MS.gene95024:intron | 35.0% | |
| CCCAACTTTCAGATATTGTT+AGG | + | chr4.4:40119540-40119559 | None:intergenic | 35.0% | |
| CTTGCATATTCCATGAATTC+AGG | + | chr4.4:40118873-40118892 | None:intergenic | 35.0% | |
| CTTTAACTCTCATTCTAGGT+TGG | + | chr4.4:40119027-40119046 | None:intergenic | 35.0% | |
| GAATGAGGAAGTAATGATAG+AGG | - | chr4.4:40120320-40120339 | MS.gene95024:intron | 35.0% | |
| GCATTACCACTACTCTAAAT+TGG | - | chr4.4:40120730-40120749 | MS.gene95024:intron | 35.0% | |
| GCCTAACAATATCTGAAAGT+TGG | - | chr4.4:40119536-40119555 | MS.gene95024:CDS | 35.0% | |
| GGAAAGAAAGAAATTCTCAC+AGG | + | chr4.4:40118692-40118711 | None:intergenic | 35.0% | |
| GTTAAGATCATGGTTAATCC+AGG | - | chr4.4:40120936-40120955 | MS.gene95024:CDS | 35.0% | |
| TCCAAGCAAAGTTAAGATCA+TGG | - | chr4.4:40120926-40120945 | MS.gene95024:CDS | 35.0% | |
| TGCAATCATAACTAGTGAGT+TGG | - | chr4.4:40119828-40119847 | MS.gene95024:CDS | 35.0% | |
| TTATGCTTCTTCTTTAACCG+AGG | + | chr4.4:40119961-40119980 | None:intergenic | 35.0% | |
| TTCCATGAATTCAGGTACTT+TGG | + | chr4.4:40118865-40118884 | None:intergenic | 35.0% | |
| ! | ACACCTTCAATCTAAAGTGT+CGG | - | chr4.4:40119367-40119386 | MS.gene95024:CDS | 35.0% |
| ! | AGATAGGGTATTAAGGTGTA+AGG | - | chr4.4:40120971-40120990 | MS.gene95024:CDS | 35.0% |
| ! | AGTATCCCTTTTCTTGAACT+TGG | + | chr4.4:40119619-40119638 | None:intergenic | 35.0% |
| ! | AGTCTGAAACGAAAAGCAAA+GGG | - | chr4.4:40119917-40119936 | MS.gene95024:CDS | 35.0% |
| ! | ATCCAAAGTACCTGAATTCA+TGG | - | chr4.4:40118860-40118879 | MS.gene95024:CDS | 35.0% |
| ! | ATTTTCTTTCAACCCACCAT+TGG | - | chr4.4:40120830-40120849 | MS.gene95024:CDS | 35.0% |
| ! | CATAGGAATAATGTCGATTG+AGG | - | chr4.4:40120038-40120057 | MS.gene95024:intron | 35.0% |
| ! | CATGACGGTCAATGAATTTT+GGG | + | chr4.4:40120584-40120603 | None:intergenic | 35.0% |
| ! | CCTAATCCAATTTAGAGTAG+TGG | + | chr4.4:40120739-40120758 | None:intergenic | 35.0% |
| ! | GTTTTCAAAGACAACAACAG+TGG | - | chr4.4:40118488-40118507 | MS.gene95024:CDS | 35.0% |
| ! | TATATGATTTGCACAAGAGC+CGG | + | chr4.4:40119707-40119726 | None:intergenic | 35.0% |
| ! | TCATGACGGTCAATGAATTT+TGG | + | chr4.4:40120585-40120604 | None:intergenic | 35.0% |
| ! | TCATTGTCATGGGACTTTTA+AGG | - | chr4.4:40119073-40119092 | MS.gene95024:CDS | 35.0% |
| ! | TTTTCTTTCAACCCACCATT+GGG | - | chr4.4:40120831-40120850 | MS.gene95024:CDS | 35.0% |
| !! | TGGAATGAAGTACTGAGAAA+GGG | - | chr4.4:40120654-40120673 | MS.gene95024:intron | 35.0% |
| !!! | AAATTTTGGAGTGGAAGTTG+GGG | + | chr4.4:40119406-40119425 | None:intergenic | 35.0% |
| AAACACAACACCAACACACA+TGG | + | chr4.4:40119320-40119339 | None:intergenic | 40.0% | |
| AAAGGGATACTACTACCTTG+TGG | - | chr4.4:40119628-40119647 | MS.gene95024:CDS | 40.0% | |
| AGAATCTGAGGATGTTTCTC+TGG | - | chr4.4:40120005-40120024 | MS.gene95024:intron | 40.0% | |
| AGACCGACACTTTAGATTGA+AGG | + | chr4.4:40119373-40119392 | None:intergenic | 40.0% | |
| AGATGTGTGAGATTCTAGGT+TGG | + | chr4.4:40119659-40119678 | None:intergenic | 40.0% | |
| AGGAGATAGAAACTTTGCGT+TGG | + | chr4.4:40118612-40118631 | None:intergenic | 40.0% | |
| ATATGGAAGATATGAGCCCA+AGG | - | chr4.4:40120895-40120914 | MS.gene95024:CDS | 40.0% | |
| ATCCCTGTAATCTTGTACAC+TGG | + | chr4.4:40119593-40119612 | None:intergenic | 40.0% | |
| CAAGAGATGTGTGAGATTCT+AGG | + | chr4.4:40119663-40119682 | None:intergenic | 40.0% | |
| CAGAGAGGGAAATCAATTGA+TGG | - | chr4.4:40120273-40120292 | MS.gene95024:intron | 40.0% | |
| CATCATTAGGAATTTGCCAC+AGG | + | chr4.4:40119126-40119145 | None:intergenic | 40.0% | |
| CTTACTCCTGTAGCTTTCAT+TGG | + | chr4.4:40119752-40119771 | None:intergenic | 40.0% | |
| GAATTCTGAACTGAATCCTG+TGG | - | chr4.4:40119107-40119126 | MS.gene95024:CDS | 40.0% | |
| GCTTCTTCAAGCTTTCTTTG+TGG | - | chr4.4:40120773-40120792 | MS.gene95024:intron | 40.0% | |
| TAAGGAAAGGAGAACAACGA+TGG | + | chr4.4:40118982-40119001 | None:intergenic | 40.0% | |
| TCAACCCTTAAAACTCCCAA+TGG | + | chr4.4:40120849-40120868 | None:intergenic | 40.0% | |
| TCAGTAATCTTCCTCAGAGA+GGG | - | chr4.4:40120259-40120278 | MS.gene95024:intron | 40.0% | |
| TCCAAATAGAGCAGAATCTG+AGG | - | chr4.4:40119993-40120012 | MS.gene95024:intron | 40.0% | |
| TCCTCAGATTCTGCTCTATT+TGG | + | chr4.4:40119997-40120016 | None:intergenic | 40.0% | |
| TGCAGGGTTACATTTATTGC+AGG | + | chr4.4:40119812-40119831 | None:intergenic | 40.0% | |
| TTGCTCTTAGGAATTTGAGC+TGG | - | chr4.4:40120634-40120653 | MS.gene95024:intron | 40.0% | |
| ! | CAATATTGTTGTTCCTGCCA+CGG | - | chr4.4:40119876-40119895 | MS.gene95024:CDS | 40.0% |
| ! | CAGTCTGAAACGAAAAGCAA+AGG | - | chr4.4:40119916-40119935 | MS.gene95024:CDS | 40.0% |
| ! | CTCTAAATTGGATTAGGCCT+TGG | - | chr4.4:40120742-40120761 | MS.gene95024:intron | 40.0% |
| ! | GTCTGAAACGAAAAGCAAAG+GGG | - | chr4.4:40119918-40119937 | MS.gene95024:CDS | 40.0% |
| ! | TCAATTGATTTCCCTCTCTG+AGG | + | chr4.4:40120273-40120292 | None:intergenic | 40.0% |
| ! | TCTGAGATGCGATGTTCATT+GGG | - | chr4.4:40120120-40120139 | MS.gene95024:intron | 40.0% |
| ! | TGATTTCGTGGTTGTTTCCT+CGG | - | chr4.4:40119941-40119960 | MS.gene95024:CDS | 40.0% |
| !! | CTGGAATGAAGTACTGAGAA+AGG | - | chr4.4:40120653-40120672 | MS.gene95024:intron | 40.0% |
| !! | TCTAGGTTGGTAAAACCACA+AGG | + | chr4.4:40119646-40119665 | None:intergenic | 40.0% |
| !! | TTCTGAGATGCGATGTTCAT+TGG | - | chr4.4:40120119-40120138 | MS.gene95024:intron | 40.0% |
| AAAGCAAAGGGGTGATTTCG+TGG | - | chr4.4:40119929-40119948 | MS.gene95024:CDS | 45.0% | |
| AAAGCTTGAAGAAGCTGCTC+AGG | + | chr4.4:40120768-40120787 | None:intergenic | 45.0% | |
| ACCCTTAAAACTCCCAATGG+TGG | + | chr4.4:40120846-40120865 | None:intergenic | 45.0% | |
| AGAAACAGAGCGAGAAACAG+GGG | + | chr4.4:40118636-40118655 | None:intergenic | 45.0% | |
| AGCGAACGAGAATAGAGATG+TGG | - | chr4.4:40120083-40120102 | MS.gene95024:intron | 45.0% | |
| AGCTCTTAGTTCCACAGCTT+TGG | + | chr4.4:40118555-40118574 | None:intergenic | 45.0% | |
| AGTGGAAGTTGGGGAATTAC+AGG | + | chr4.4:40119397-40119416 | None:intergenic | 45.0% | |
| AGTTGGGATGAAGGAGAATC+AGG | - | chr4.4:40119553-40119572 | MS.gene95024:CDS | 45.0% | |
| ATGACGAGAATTTCGCTTGG+CGG | + | chr4.4:40120611-40120630 | None:intergenic | 45.0% | |
| ATTCTCACAGGGGTGAAAAC+AGG | + | chr4.4:40118680-40118699 | None:intergenic | 45.0% | |
| ATTTGCACAAGAGCCGGTTA+CGG | + | chr4.4:40119701-40119720 | None:intergenic | 45.0% | |
| CACCTACCAATGAAAGCTAC+AGG | - | chr4.4:40119743-40119762 | MS.gene95024:CDS | 45.0% | |
| CAGAACTGCCTTTGAGTACT+TGG | + | chr4.4:40120487-40120506 | None:intergenic | 45.0% | |
| CCCTTAAAACTCCCAATGGT+GGG | + | chr4.4:40120845-40120864 | None:intergenic | 45.0% | |
| CGAATGACGAGAATTTCGCT+TGG | + | chr4.4:40120614-40120633 | None:intergenic | 45.0% | |
| CGTGGCAGGAACAACAATAT+TGG | + | chr4.4:40119878-40119897 | None:intergenic | 45.0% | |
| CTCAGTAATCTTCCTCAGAG+AGG | - | chr4.4:40120258-40120277 | MS.gene95024:intron | 45.0% | |
| CTCCTGTAGCTTTCATTGGT+AGG | + | chr4.4:40119748-40119767 | None:intergenic | 45.0% | |
| CTGTGGATTTGTACCTGCAA+AGG | + | chr4.4:40120998-40121017 | None:intergenic | 45.0% | |
| GAGAAACAGAGCGAGAAACA+GGG | + | chr4.4:40118637-40118656 | None:intergenic | 45.0% | |
| GATGACACCAAATCCGTAAC+CGG | - | chr4.4:40119685-40119704 | MS.gene95024:CDS | 45.0% | |
| TAAGGTGTAAGGTCCTTTGC+AGG | - | chr4.4:40120982-40121001 | MS.gene95024:CDS | 45.0% | |
| TCTCGTCATTCGTTGCTCTT+AGG | - | chr4.4:40120622-40120641 | MS.gene95024:intron | 45.0% | |
| TCTGGTTGTACGATGCAAGT+GGG | + | chr4.4:40119504-40119523 | None:intergenic | 45.0% | |
| TGACGAGTCAGTATTGTGTC+CGG | + | chr4.4:40119256-40119275 | None:intergenic | 45.0% | |
| TGAGAAACAGAGCGAGAAAC+AGG | + | chr4.4:40118638-40118657 | None:intergenic | 45.0% | |
| TTAGGCATTTCGTGTGGTTC+TGG | + | chr4.4:40119522-40119541 | None:intergenic | 45.0% | |
| TTCAGACTGAAACGACGAGT+GGG | + | chr4.4:40119905-40119924 | None:intergenic | 45.0% | |
| TTCTCACAGGGGTGAAAACA+GGG | + | chr4.4:40118679-40118698 | None:intergenic | 45.0% | |
| TTTCAGACTGAAACGACGAG+TGG | + | chr4.4:40119906-40119925 | None:intergenic | 45.0% | |
| ! | ACCCACCATTGGGAGTTTTA+AGG | - | chr4.4:40120841-40120860 | MS.gene95024:CDS | 45.0% |
| ! | GAGACAGAAGATGGAGTACT+TGG | - | chr4.4:40120149-40120168 | MS.gene95024:intron | 45.0% |
| ! | TAGTTCCACAGCTTTGGCTA+TGG | + | chr4.4:40118549-40118568 | None:intergenic | 45.0% |
| ! | TTCTGGTTGTACGATGCAAG+TGG | + | chr4.4:40119505-40119524 | None:intergenic | 45.0% |
| !! | CCCACCATTGGGAGTTTTAA+GGG | - | chr4.4:40120842-40120861 | MS.gene95024:CDS | 45.0% |
| !! | CTTCATGCTGCTTTAATGCG+AGG | - | chr4.4:40118575-40118594 | MS.gene95024:CDS | 45.0% |
| !! | GGATGTTTCTCTGGTTCTCA+AGG | - | chr4.4:40120014-40120033 | MS.gene95024:intron | 45.0% |
| !! | TCTCTGGTTCTCAAGGACAT+AGG | - | chr4.4:40120021-40120040 | MS.gene95024:intron | 45.0% |
| !!! | AAAATTAAAAAGATAAATTT+TGG | + | chr4.4:40119420-40119439 | None:intergenic | 5.0% |
| !!! | TTTTAATTTTTTTATTTTGA+TGG | - | chr4.4:40119430-40119449 | MS.gene95024:CDS | 5.0% |
| ACAAGAGCCGGTTACGGATT+TGG | + | chr4.4:40119695-40119714 | None:intergenic | 50.0% | |
| AGATATGAGCCCAAGGTCAC+AGG | - | chr4.4:40120902-40120921 | MS.gene95024:CDS | 50.0% | |
| CGAGAATAGAGATGTGGCGT+TGG | - | chr4.4:40120089-40120108 | MS.gene95024:intron | 50.0% | |
| GAAACAATCCATGCAGACGC+AGG | - | chr4.4:40120203-40120222 | MS.gene95024:intron | 50.0% | |
| GATATGAGCCCAAGGTCACA+GGG | - | chr4.4:40120903-40120922 | MS.gene95024:CDS | 50.0% | |
| GGGAGAGTTGAGACAGAAGA+TGG | - | chr4.4:40120140-40120159 | MS.gene95024:intron | 50.0% | |
| TGAAGAGCGGACACAAACAC+CGG | - | chr4.4:40119234-40119253 | MS.gene95024:CDS | 50.0% | |
| TTGTGGCTGCAAAGTGCATG+TGG | - | chr4.4:40120790-40120809 | MS.gene95024:intron | 50.0% | |
| ! | CTAGTGAGTTGGAGAGTGCA+AGG | - | chr4.4:40119839-40119858 | MS.gene95024:CDS | 50.0% |
| ! | GAATAGAGATGTGGCGTTGG+TGG | - | chr4.4:40120092-40120111 | MS.gene95024:intron | 50.0% |
| AAACGACGAGTGGGAATCCG+TGG | + | chr4.4:40119896-40119915 | None:intergenic | 55.0% | |
| AATCCATGCAGACGCAGGCA+AGG | - | chr4.4:40120208-40120227 | MS.gene95024:intron | 55.0% | |
| ACAGAGCGAGAAACAGGGGA+AGG | + | chr4.4:40118632-40118651 | None:intergenic | 55.0% | |
| ATCCATGCAGACGCAGGCAA+GGG | - | chr4.4:40120209-40120228 | MS.gene95024:intron | 55.0% | |
| GGTTGCCATAGCCAAAGCTG+TGG | - | chr4.4:40118541-40118560 | MS.gene95024:CDS | 55.0% | |
| TCGCTTGGCGGTCTTCATGA+CGG | + | chr4.4:40120599-40120618 | None:intergenic | 55.0% | |
| TGAAGAAGCTGCTCAGGCCA+AGG | + | chr4.4:40120762-40120781 | None:intergenic | 55.0% | |
| TGCTTGGACCCTGTGACCTT+GGG | + | chr4.4:40120914-40120933 | None:intergenic | 55.0% | |
| TTGCTTGGACCCTGTGACCT+TGG | + | chr4.4:40120915-40120934 | None:intergenic | 55.0% | |
| ATCCCTTGCCTGCGTCTGCA+TGG | + | chr4.4:40120214-40120233 | None:intergenic | 60.0% | |
| GCCTCACACACGTCAGACGT+CGG | - | chr4.4:40119342-40119361 | MS.gene95024:CDS | 60.0% | |
| TCCGACGTCTGACGTGTGTG+AGG | + | chr4.4:40119346-40119365 | None:intergenic | 60.0% | |
| GACGAGTGGGAATCCGTGGC+AGG | + | chr4.4:40119892-40119911 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 40118461 | 40121022 | 40118461 | ID=MS.gene95024 |
| chr4.4 | mRNA | 40118461 | 40121022 | 40118461 | ID=MS.gene95024.t1;Parent=MS.gene95024 |
| chr4.4 | exon | 40120792 | 40121022 | 40120792 | ID=MS.gene95024.t1.exon1;Parent=MS.gene95024.t1 |
| chr4.4 | CDS | 40120792 | 40121022 | 40120792 | ID=cds.MS.gene95024.t1;Parent=MS.gene95024.t1 |
| chr4.4 | exon | 40118461 | 40119996 | 40118461 | ID=MS.gene95024.t1.exon2;Parent=MS.gene95024.t1 |
| chr4.4 | CDS | 40118461 | 40119996 | 40118461 | ID=cds.MS.gene95024.t1;Parent=MS.gene95024.t1 |
| Gene Sequence |
| Protein sequence |
