AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058233


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058233.t1 MTR_2g034140 96.244 426 15 1 1 426 1 425 0.0 846
MS.gene058233.t1 MTR_2g034140 96.560 407 13 1 20 426 6 411 0.0 809
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 82 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCCTGAGCATCTCTTAT+TGG 0.255116 2.4:+56553732 MS.gene058233:CDS
AATATTACCTTGCACTTGTA+TGG 0.266728 2.4:-56552215 None:intergenic
GCAGGCTTTCTTCAACTTGC+TGG 0.275625 2.4:+56553241 MS.gene058233:intron
AGTCTCTCCAGAGAGGTAAT+TGG 0.280375 2.4:+56551090 MS.gene058233:CDS
AGCATCTCTTATTGGCTCTA+AGG 0.283609 2.4:+56553740 MS.gene058233:CDS
GAAGAACATTGGCGTGCTTT+AGG 0.316018 2.4:+56552414 MS.gene058233:CDS
CTTCAGTACTCTTGGTGTTT+CGG 0.323610 2.4:-56551825 None:intergenic
ACATCTTATGCTGCCTTAGA+AGG 0.333220 2.4:+56551383 MS.gene058233:CDS
AAGTTGAAGTTTCTAAGATT+TGG 0.338252 2.4:-56552652 None:intergenic
ATCTTAGAAACTTCAACTTA+TGG 0.342098 2.4:+56552656 MS.gene058233:CDS
ATTGTTGAATCTCCAACATT+AGG 0.343139 2.4:-56552595 None:intergenic
AGTTTGGTTTACACTCTTGC+TGG 0.350609 2.4:+56551167 MS.gene058233:CDS
TATGCTGCCTTAGAAGGCCT+TGG 0.350897 2.4:+56551389 MS.gene058233:CDS
CGTCCGATGAGTGGAGATAT+TGG 0.364584 2.4:+56552801 MS.gene058233:CDS
TCATAACCCAAGGCCTTCTA+AGG 0.373122 2.4:-56551396 None:intergenic
AATAGCCTTTGCTGCTCAAT+TGG 0.377573 2.4:+56552845 MS.gene058233:CDS
TGCTAATGCAATCTCATTCC+AGG 0.384899 2.4:+56551772 MS.gene058233:CDS
GGCATACATGTTCAGATTGT+TGG 0.392739 2.4:+56553655 MS.gene058233:intron
ATAGATTATAGACATTTAAC+AGG 0.392814 2.4:-56553784 None:intergenic
ATGCTGCCTTAGAAGGCCTT+GGG 0.406090 2.4:+56551390 MS.gene058233:CDS
TCTAAGGGAAGCTCTTGCTT+TGG 0.410450 2.4:+56553756 MS.gene058233:CDS
TGAAGCAGCTCCACCATGTT+GGG 0.410865 2.4:-56553701 None:intergenic
TTGTTTGTTTCCAGAATACT+TGG 0.412856 2.4:+56553425 MS.gene058233:intron
GTCCGATGAGTGGAGATATT+GGG 0.417237 2.4:+56552802 MS.gene058233:CDS
GTTAAAACCTTCAGTACTCT+TGG 0.418097 2.4:-56551833 None:intergenic
AGGGAAGCTCTTGCTTTGGT+TGG 0.427363 2.4:+56553760 MS.gene058233:CDS
TATTGGGAGAGGAGCAACTA+AGG 0.440476 2.4:+56552818 MS.gene058233:CDS
CAGGTTAGTTTACCTAATGT+TGG 0.448264 2.4:+56552583 MS.gene058233:intron
GTCTCTCCAGAGAGGTAATT+GGG 0.449708 2.4:+56551091 MS.gene058233:CDS
TGGAATGAGATTGCATTAGC+AGG 0.453245 2.4:-56551770 None:intergenic
TTTGTGAAGTAGATTTCTCC+TGG 0.459138 2.4:-56551790 None:intergenic
GGCTTTCTTCAACTTGCTGG+TGG 0.463509 2.4:+56553244 MS.gene058233:intron
GTGCTTAATTCCAGCAAAAG+TGG 0.464416 2.4:+56550974 MS.gene058233:intron
GATCTTCACTTTCGCAAAGC+CGG 0.473240 2.4:+56551439 MS.gene058233:CDS
CCATCACAAGCTTTAATTAG+CGG 0.477742 2.4:+56553480 MS.gene058233:CDS
TTAATTAGCGGCATAGCCTA+TGG 0.486305 2.4:+56553492 MS.gene058233:CDS
AGAGCCAATAAGAGATGCTC+AGG 0.491628 2.4:-56553736 None:intergenic
ACTAATGCTCACACAATTGA+AGG 0.491760 2.4:+56553268 MS.gene058233:CDS
TGTTGAAACAGAGATATTTG+TGG 0.497398 2.4:-56550871 None:intergenic
TGATGACGACGATGATGAAA+TGG 0.500055 2.4:-56551057 None:intergenic
GCTTCACCCAATTACCTCTC+TGG 0.500095 2.4:-56551097 None:intergenic
CAGTCCGATGGACAGTCCTC+AGG 0.509146 2.4:-56551722 None:intergenic
GTCATAACGGAGCGCTGCTA+TGG 0.513932 2.4:+56551965 MS.gene058233:CDS
TAAGAACCTCATCAACACTT+TGG 0.520508 2.4:+56551025 MS.gene058233:CDS
TAGAAACTTCAACTTATGGC+AGG 0.529444 2.4:+56552660 MS.gene058233:CDS
CCGCTAATTAAAGCTTGTGA+TGG 0.532669 2.4:-56553480 None:intergenic
GAAATGTGTTGTTCATCAGA+AGG 0.540952 2.4:+56551001 MS.gene058233:CDS
TTTAGCCAATTGAGCAGCAA+AGG 0.545220 2.4:-56552850 None:intergenic
AAAGCAAAAGATAGACCTCC+TGG 0.545248 2.4:+56552870 MS.gene058233:CDS
ACGGAGCGCTGCTATGGCTG+TGG 0.547245 2.4:+56551971 MS.gene058233:CDS
TTAGACGGCCGTCCGATGAG+TGG 0.552985 2.4:+56552792 MS.gene058233:CDS
CTTAACAGAATTTGATCCTG+AGG 0.554620 2.4:+56551706 MS.gene058233:intron
GCATCTCTTATTGGCTCTAA+GGG 0.555107 2.4:+56553741 MS.gene058233:CDS
TGTTCGTTGCAGATAATGGC+TGG 0.555418 2.4:+56550831 None:intergenic
TTGAAGCAGCTCCACCATGT+TGG 0.555464 2.4:-56553702 None:intergenic
CTTTCGCGCGTAGCCACCAT+AGG 0.556649 2.4:-56553508 None:intergenic
AATTGGGTGAAGCTCATTTG+TGG 0.561203 2.4:+56551107 MS.gene058233:CDS
TCCACCATGTTGGGATTGCA+TGG 0.562511 2.4:-56553692 None:intergenic
GTAGACTGTTTGAAGAACAT+TGG 0.564432 2.4:+56552403 MS.gene058233:CDS
CATGCAGGACGGAGTCATAA+CGG 0.567434 2.4:+56551952 MS.gene058233:intron
TTGGTTTACACTCTTGCTGG+AGG 0.575304 2.4:+56551170 MS.gene058233:CDS
TGATCCTGAGGACTGTCCAT+CGG 0.576334 2.4:+56551718 MS.gene058233:CDS
GTTGTGAGTGCTGTGAATGA+AGG 0.582088 2.4:+56551343 MS.gene058233:CDS
ATGAGTGGAGATATTGGGAG+AGG 0.585956 2.4:+56552807 MS.gene058233:CDS
CTATGGTGGCTACGCGCGAA+AGG 0.602405 2.4:+56553509 MS.gene058233:CDS
CGAAACACCAAGAGTACTGA+AGG 0.602463 2.4:+56551826 MS.gene058233:CDS
GGAATGAGATTGCATTAGCA+GGG 0.613865 2.4:-56551769 None:intergenic
CTCCCAATATCTCCACTCAT+CGG 0.614980 2.4:-56552804 None:intergenic
CAAGGGCGTGAACAGTCCGA+TGG 0.615557 2.4:-56551734 None:intergenic
TAGAAATCCATACAAGTGCA+AGG 0.617877 2.4:+56552208 MS.gene058233:CDS
GAAGCTCCAAAGTGTTGATG+AGG 0.621149 2.4:-56551031 None:intergenic
ATGTATAAACTAAAGTTAGA+CGG 0.636370 2.4:+56552777 MS.gene058233:intron
AGATCCATGCAATCCCAACA+TGG 0.647702 2.4:+56553688 MS.gene058233:CDS
CCTCTCTGGAGAGACTCAAG+TGG 0.651836 2.4:-56551083 None:intergenic
ATTAGCGGCATAGCCTATGG+TGG 0.654448 2.4:+56553495 MS.gene058233:CDS
CAATATCTCCACTCATCGGA+CGG 0.667049 2.4:-56552800 None:intergenic
TTGACACTGATCATAACCCA+AGG 0.690753 2.4:-56551406 None:intergenic
CCACTTGAGTCTCTCCAGAG+AGG 0.698123 2.4:+56551083 MS.gene058233:CDS
TCCATGCAATCCCAACATGG+TGG 0.701127 2.4:+56553691 MS.gene058233:CDS
GACGACGATGATGAAATGGA+AGG 0.701336 2.4:-56551053 None:intergenic
TCTGTTTCAACAAAACACAA+CGG 0.706458 2.4:+56550882 MS.gene058233:CDS
TGTGAATGAAGGAATTGAAG+CGG 0.725569 2.4:+56551354 MS.gene058233:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTACACAAAAATAATTA+AGG - chr2.4:56552079-56552098 None:intergenic 15.0%
!! GATTACACAAAAATAATTAA+GGG - chr2.4:56552078-56552097 None:intergenic 15.0%
!! TAAGAATTTATAATATCAGA+TGG - chr2.4:56552050-56552069 None:intergenic 15.0%
!!! ATTTCTACATTTAAAACTTT+TGG + chr2.4:56551516-56551535 MS.gene058233:intron 15.0%
!! AATAAACATGGAATAGAATT+TGG - chr2.4:56552737-56552756 None:intergenic 20.0%
!! ATGATAGATATAAATCCTAA+AGG - chr2.4:56553190-56553209 None:intergenic 20.0%
!! ATGTATAAACTAAAGTTAGA+CGG + chr2.4:56552777-56552796 MS.gene058233:intron 20.0%
!! TAAAACTTGTAATGTTGAAT+TGG + chr2.4:56551923-56551942 MS.gene058233:intron 20.0%
!!! ATATACTTTTCATATTGATC+AGG + chr2.4:56552117-56552136 MS.gene058233:intron 20.0%
!!! ATCCTACTTATTTTATCATA+GGG - chr2.4:56552016-56552035 None:intergenic 20.0%
!!! TATCCTACTTATTTTATCAT+AGG - chr2.4:56552017-56552036 None:intergenic 20.0%
!!! TTCCATAAATACTTGTTTTA+AGG + chr2.4:56552520-56552539 MS.gene058233:intron 20.0%
! AAACTTTAATCTATGCTTAC+TGG + chr2.4:56551654-56551673 MS.gene058233:intron 25.0%
! AACCTCTTCTAATATTTAAG+GGG + chr2.4:56552483-56552502 MS.gene058233:intron 25.0%
! AATTCAAGAATTGGATTATG+TGG + chr2.4:56551278-56551297 MS.gene058233:intron 25.0%
! AGCCTTAAAACAAGTATTTA+TGG - chr2.4:56552525-56552544 None:intergenic 25.0%
! ATCTTAGAAACTTCAACTTA+TGG + chr2.4:56552656-56552675 MS.gene058233:CDS 25.0%
! ATTGAAGGATTGAAAAAAGA+AGG + chr2.4:56553283-56553302 MS.gene058233:CDS 25.0%
! ATTTACTATTGAAATGATCC+AGG + chr2.4:56552564-56552583 MS.gene058233:intron 25.0%
! CAACCTCTTCTAATATTTAA+GGG + chr2.4:56552482-56552501 MS.gene058233:intron 25.0%
! CAGTTATATTCTAGTATTTC+AGG - chr2.4:56552247-56552266 None:intergenic 25.0%
! TAAATATTAGAAGAGGTTGA+AGG - chr2.4:56552481-56552500 None:intergenic 25.0%
! TCAACCTCTTCTAATATTTA+AGG + chr2.4:56552481-56552500 MS.gene058233:intron 25.0%
! TGATATCAAAAATCTCAGTT+TGG + chr2.4:56551151-56551170 MS.gene058233:CDS 25.0%
!! AATTTAGAACAGAAACAGAA+TGG - chr2.4:56553572-56553591 None:intergenic 25.0%
!! GTCTAACTTTAGTTTATACA+TGG - chr2.4:56552778-56552797 None:intergenic 25.0%
!!! AAGTTGAAGTTTCTAAGATT+TGG - chr2.4:56552655-56552674 None:intergenic 25.0%
!!! CTACATTTAAAACTTTTGGA+AGG + chr2.4:56551520-56551539 MS.gene058233:intron 25.0%
!!! TCCTACTTATTTTATCATAG+GGG - chr2.4:56552015-56552034 None:intergenic 25.0%
!!! TGGGTTTGTTAAAATAAACA+TGG - chr2.4:56552749-56552768 None:intergenic 25.0%
!!! TTTCTGTTCTAAATTTTCTG+TGG + chr2.4:56553577-56553596 MS.gene058233:intron 25.0%
AACCAAGCAAATTCAAGAAT+TGG + chr2.4:56551269-56551288 MS.gene058233:intron 30.0%
AACCCCTTAAATATTAGAAG+AGG - chr2.4:56552488-56552507 None:intergenic 30.0%
AATATTACCTTGCACTTGTA+TGG - chr2.4:56552218-56552237 None:intergenic 30.0%
AATGTTTCATTCCCTTAACA+TGG + chr2.4:56553219-56553238 MS.gene058233:intron 30.0%
AGGATCAAATTCTGTTAAGA+AGG - chr2.4:56551705-56551724 None:intergenic 30.0%
AGTTTATACATGGCAAAGAT+GGG - chr2.4:56552768-56552787 None:intergenic 30.0%
ATTGTTGAATCTCCAACATT+AGG - chr2.4:56552598-56552617 None:intergenic 30.0%
GACATGATATGAATCTATGA+TGG + chr2.4:56553117-56553136 MS.gene058233:intron 30.0%
TAAAATCTTATCCTGAGTTG+AGG - chr2.4:56553023-56553042 None:intergenic 30.0%
TAGTTTATACATGGCAAAGA+TGG - chr2.4:56552769-56552788 None:intergenic 30.0%
TCTGTTTCAACAAAACACAA+CGG + chr2.4:56550882-56550901 MS.gene058233:CDS 30.0%
TGTTGAAACAGAGATATTTG+TGG - chr2.4:56550874-56550893 None:intergenic 30.0%
TTGAATAAGAACTGTCTTAC+CGG - chr2.4:56551461-56551480 None:intergenic 30.0%
TTGAATTGGATTTAACATGC+AGG + chr2.4:56551937-56551956 MS.gene058233:intron 30.0%
TTGTTTGTTTCCAGAATACT+TGG + chr2.4:56553425-56553444 MS.gene058233:intron 30.0%
! ATCCAATTCTTGAATTTGCT+TGG - chr2.4:56551274-56551293 None:intergenic 30.0%
! GAGAACATTTTGTTCATAGA+AGG - chr2.4:56552622-56552641 None:intergenic 30.0%
! TTTTCATGATCCAAGTATTC+TGG - chr2.4:56553438-56553457 None:intergenic 30.0%
!! GGATAAGATTTTAACGAGAT+AGG + chr2.4:56553030-56553049 MS.gene058233:intron 30.0%
AAGATCTTATCCTGTCATGT+TGG + chr2.4:56552985-56553004 MS.gene058233:intron 35.0%
ACTAATGCTCACACAATTGA+AGG + chr2.4:56553268-56553287 MS.gene058233:CDS 35.0%
ATGTCTCAATCCAGTGTTTA+AGG - chr2.4:56553102-56553121 None:intergenic 35.0%
ATTGGATTTAACATGCAGGA+CGG + chr2.4:56551941-56551960 MS.gene058233:intron 35.0%
CAACATTAGGTAAACTAACC+TGG - chr2.4:56552585-56552604 None:intergenic 35.0%
CTTAACAGAATTTGATCCTG+AGG + chr2.4:56551706-56551725 MS.gene058233:intron 35.0%
GCCCCTATGATAAAATAAGT+AGG + chr2.4:56552011-56552030 MS.gene058233:intron 35.0%
GTAGACTGTTTGAAGAACAT+TGG + chr2.4:56552403-56552422 MS.gene058233:CDS 35.0%
GTCAAGTTATCGTATCATGA+TGG + chr2.4:56553074-56553093 MS.gene058233:intron 35.0%
GTCACATTATGTGATGACAT+TGG + chr2.4:56553634-56553653 MS.gene058233:intron 35.0%
GTTAAAACCTTCAGTACTCT+TGG - chr2.4:56551836-56551855 None:intergenic 35.0%
TAAGAACCTCATCAACACTT+TGG + chr2.4:56551025-56551044 MS.gene058233:CDS 35.0%
TAGAAACTTCAACTTATGGC+AGG + chr2.4:56552660-56552679 MS.gene058233:CDS 35.0%
TAGAAATCCATACAAGTGCA+AGG + chr2.4:56552208-56552227 MS.gene058233:CDS 35.0%
TCTCTATCATGACCATCAAA+CGG - chr2.4:56552944-56552963 None:intergenic 35.0%
TGTGAATGAAGGAATTGAAG+CGG + chr2.4:56551354-56551373 MS.gene058233:CDS 35.0%
TTGAATTGTGAATACGAACC+AGG - chr2.4:56552891-56552910 None:intergenic 35.0%
TTTGTGAAGTAGATTTCTCC+TGG - chr2.4:56551793-56551812 None:intergenic 35.0%
! ATTTTATCATAGGGGCAAAC+TGG - chr2.4:56552007-56552026 None:intergenic 35.0%
! CCATCACAAGCTTTAATTAG+CGG + chr2.4:56553480-56553499 MS.gene058233:CDS 35.0%
! CTTTTCATATTGATCAGGAG+AGG + chr2.4:56552122-56552141 MS.gene058233:intron 35.0%
! GAAATGTGTTGTTCATCAGA+AGG + chr2.4:56551001-56551020 MS.gene058233:CDS 35.0%
! TTTGATGGTCATGATAGAGA+CGG + chr2.4:56552944-56552963 MS.gene058233:intron 35.0%
!! AAGATTTTAACGAGATAGGC+AGG + chr2.4:56553034-56553053 MS.gene058233:intron 35.0%
!! CAGGTTAGTTTACCTAATGT+TGG + chr2.4:56552583-56552602 MS.gene058233:intron 35.0%
!! CATTTCTTATCCACTTTTGC+TGG - chr2.4:56550987-56551006 None:intergenic 35.0%
AAAGCAAAAGATAGACCTCC+TGG + chr2.4:56552870-56552889 MS.gene058233:CDS 40.0%
AAGAAAGCCTGCCATGTTAA+GGG - chr2.4:56553233-56553252 None:intergenic 40.0%
AATAGCCTTTGCTGCTCAAT+TGG + chr2.4:56552845-56552864 MS.gene058233:CDS 40.0%
AATTGGGTGAAGCTCATTTG+TGG + chr2.4:56551107-56551126 MS.gene058233:CDS 40.0%
AATTGTGAATACGAACCAGG+AGG - chr2.4:56552888-56552907 None:intergenic 40.0%
ACATCTTATGCTGCCTTAGA+AGG + chr2.4:56551383-56551402 MS.gene058233:CDS 40.0%
CCGCTAATTAAAGCTTGTGA+TGG - chr2.4:56553483-56553502 None:intergenic 40.0%
CTCTATCATGACCATCAAAC+GGG - chr2.4:56552943-56552962 None:intergenic 40.0%
GAGTTAGAAACCAACATGAC+AGG - chr2.4:56552998-56553017 None:intergenic 40.0%
GATAGAGACGGATAGGATAT+GGG + chr2.4:56552956-56552975 MS.gene058233:intron 40.0%
GCAGGATATGATATGTGACA+TGG + chr2.4:56553052-56553071 MS.gene058233:intron 40.0%
GGAATGAGATTGCATTAGCA+GGG - chr2.4:56551772-56551791 None:intergenic 40.0%
GGCATACATGTTCAGATTGT+TGG + chr2.4:56553655-56553674 MS.gene058233:intron 40.0%
GTGCTTAATTCCAGCAAAAG+TGG + chr2.4:56550974-56550993 MS.gene058233:intron 40.0%
TCATCCTGAGCATCTCTTAT+TGG + chr2.4:56553732-56553751 MS.gene058233:CDS 40.0%
TGATAGAGACGGATAGGATA+TGG + chr2.4:56552955-56552974 MS.gene058233:intron 40.0%
TGCTAATGCAATCTCATTCC+AGG + chr2.4:56551772-56551791 MS.gene058233:CDS 40.0%
TGGAATGAGATTGCATTAGC+AGG - chr2.4:56551773-56551792 None:intergenic 40.0%
TTAATTAGCGGCATAGCCTA+TGG + chr2.4:56553492-56553511 MS.gene058233:CDS 40.0%
TTGACACTGATCATAACCCA+AGG - chr2.4:56551409-56551428 None:intergenic 40.0%
TTTAGCCAATTGAGCAGCAA+AGG - chr2.4:56552853-56552872 None:intergenic 40.0%
TTTCATTCCCTTAACATGGC+AGG + chr2.4:56553223-56553242 MS.gene058233:intron 40.0%
! AGTTTGGTTTACACTCTTGC+TGG + chr2.4:56551167-56551186 MS.gene058233:CDS 40.0%
! CATTTGTGGTGCAAGTTTTG+AGG + chr2.4:56551121-56551140 MS.gene058233:CDS 40.0%
! TGATGACGACGATGATGAAA+TGG - chr2.4:56551060-56551079 None:intergenic 40.0%
!! AGCATCTCTTATTGGCTCTA+AGG + chr2.4:56553740-56553759 MS.gene058233:CDS 40.0%
!! CTTCAGTACTCTTGGTGTTT+CGG - chr2.4:56551828-56551847 None:intergenic 40.0%
!! GCATCTCTTATTGGCTCTAA+GGG + chr2.4:56553741-56553760 MS.gene058233:CDS 40.0%
AATCCTAAAGGCCCGATCAA+TGG - chr2.4:56553178-56553197 None:intergenic 45.0%
ACTTCAACTTATGGCAGGTG+TGG + chr2.4:56552665-56552684 MS.gene058233:intron 45.0%
AGAGCCAATAAGAGATGCTC+AGG - chr2.4:56553739-56553758 None:intergenic 45.0%
AGATCCATGCAATCCCAACA+TGG + chr2.4:56553688-56553707 MS.gene058233:CDS 45.0%
AGTCTCTCCAGAGAGGTAAT+TGG + chr2.4:56551090-56551109 MS.gene058233:CDS 45.0%
ATGAGTGGAGATATTGGGAG+AGG + chr2.4:56552807-56552826 MS.gene058233:CDS 45.0%
CAATATCTCCACTCATCGGA+CGG - chr2.4:56552803-56552822 None:intergenic 45.0%
CAGGATGAGAGAGACATGAT+AGG - chr2.4:56553154-56553173 None:intergenic 45.0%
CAGTCTACTCTGCCTATAGA+AGG - chr2.4:56552391-56552410 None:intergenic 45.0%
CATGATGGCTCCTTAAACAC+TGG + chr2.4:56553089-56553108 MS.gene058233:intron 45.0%
CTATCATGTCTCTCTCATCC+TGG + chr2.4:56553152-56553171 MS.gene058233:intron 45.0%
CTCCCAATATCTCCACTCAT+CGG - chr2.4:56552807-56552826 None:intergenic 45.0%
GAAGAAAGCCTGCCATGTTA+AGG - chr2.4:56553234-56553253 None:intergenic 45.0%
GAAGAACATTGGCGTGCTTT+AGG + chr2.4:56552414-56552433 MS.gene058233:CDS 45.0%
GACGACGATGATGAAATGGA+AGG - chr2.4:56551056-56551075 None:intergenic 45.0%
GATCTTCACTTTCGCAAAGC+CGG + chr2.4:56551439-56551458 MS.gene058233:CDS 45.0%
GTCCGATGAGTGGAGATATT+GGG + chr2.4:56552802-56552821 MS.gene058233:CDS 45.0%
GTCTCTCCAGAGAGGTAATT+GGG + chr2.4:56551091-56551110 MS.gene058233:CDS 45.0%
TATTGGGAGAGGAGCAACTA+AGG + chr2.4:56552818-56552837 MS.gene058233:CDS 45.0%
TCATAACCCAAGGCCTTCTA+AGG - chr2.4:56551399-56551418 None:intergenic 45.0%
TCTAAGGGAAGCTCTTGCTT+TGG + chr2.4:56553756-56553775 MS.gene058233:CDS 45.0%
TCTTCACAAGACCCGTTTGA+TGG + chr2.4:56552929-56552948 MS.gene058233:intron 45.0%
TGGTCATGATAGAGACGGAT+AGG + chr2.4:56552949-56552968 MS.gene058233:intron 45.0%
TTCTAACTCAGCCTCAACTC+AGG + chr2.4:56553009-56553028 MS.gene058233:intron 45.0%
TTGAAGCTAGTAGCCGTAAG+TGG + chr2.4:56552453-56552472 MS.gene058233:intron 45.0%
TTGGTTTACACTCTTGCTGG+AGG + chr2.4:56551170-56551189 MS.gene058233:CDS 45.0%
! CAGGGCAAACATTTTCGCAA+GGG - chr2.4:56551754-56551773 None:intergenic 45.0%
! GATGCATCGACACAAGGAAA+TGG - chr2.4:56552369-56552388 None:intergenic 45.0%
! GTGTCGATGCATCCTTCTAT+AGG + chr2.4:56552376-56552395 MS.gene058233:intron 45.0%
! GTTGTGAGTGCTGTGAATGA+AGG + chr2.4:56551343-56551362 MS.gene058233:CDS 45.0%
! TAGAAGGATGCATCGACACA+AGG - chr2.4:56552375-56552394 None:intergenic 45.0%
!! CGAAACACCAAGAGTACTGA+AGG + chr2.4:56551826-56551845 MS.gene058233:CDS 45.0%
!! GAAGCTCCAAAGTGTTGATG+AGG - chr2.4:56551034-56551053 None:intergenic 45.0%
AGGGAAGCTCTTGCTTTGGT+TGG + chr2.4:56553760-56553779 MS.gene058233:CDS 50.0%
ATGCTGCCTTAGAAGGCCTT+GGG + chr2.4:56551390-56551409 MS.gene058233:CDS 50.0%
ATTAGCGGCATAGCCTATGG+TGG + chr2.4:56553495-56553514 MS.gene058233:CDS 50.0%
CATGCAGGACGGAGTCATAA+CGG + chr2.4:56551952-56551971 MS.gene058233:intron 50.0%
CGTCCGATGAGTGGAGATAT+TGG + chr2.4:56552801-56552820 MS.gene058233:CDS 50.0%
CTCTCATCCTGGCCATTGAT+CGG + chr2.4:56553163-56553182 MS.gene058233:intron 50.0%
GCAGGCTTTCTTCAACTTGC+TGG + chr2.4:56553241-56553260 MS.gene058233:intron 50.0%
GCTTCACCCAATTACCTCTC+TGG - chr2.4:56551100-56551119 None:intergenic 50.0%
TATGCTGCCTTAGAAGGCCT+TGG + chr2.4:56551389-56551408 MS.gene058233:CDS 50.0%
TCCACCATGTTGGGATTGCA+TGG - chr2.4:56553695-56553714 None:intergenic 50.0%
TCCATGCAATCCCAACATGG+TGG + chr2.4:56553691-56553710 MS.gene058233:CDS 50.0%
TCTCATCCTGGCCATTGATC+GGG + chr2.4:56553164-56553183 MS.gene058233:intron 50.0%
TGAAGCAGCTCCACCATGTT+GGG - chr2.4:56553704-56553723 None:intergenic 50.0%
TGATCCTGAGGACTGTCCAT+CGG + chr2.4:56551718-56551737 MS.gene058233:CDS 50.0%
TTGAAGCAGCTCCACCATGT+TGG - chr2.4:56553705-56553724 None:intergenic 50.0%
! GCAGGGCAAACATTTTCGCA+AGG - chr2.4:56551755-56551774 None:intergenic 50.0%
!! GAGGTTGAAGGCACCACTTA+CGG - chr2.4:56552469-56552488 None:intergenic 50.0%
!! GGCTTTCTTCAACTTGCTGG+TGG + chr2.4:56553244-56553263 MS.gene058233:intron 50.0%
CCACTTGAGTCTCTCCAGAG+AGG + chr2.4:56551083-56551102 MS.gene058233:CDS 55.0%
TAAAGGCCCGATCAATGGCC+AGG - chr2.4:56553173-56553192 None:intergenic 55.0%
TGGCCATTGATCGGGCCTTT+AGG + chr2.4:56553172-56553191 MS.gene058233:intron 55.0%
! CCTCTCTGGAGAGACTCAAG+TGG - chr2.4:56551086-56551105 None:intergenic 55.0%
!! GTCATAACGGAGCGCTGCTA+TGG + chr2.4:56551965-56551984 MS.gene058233:CDS 55.0%
CAGTCCGATGGACAGTCCTC+AGG - chr2.4:56551725-56551744 None:intergenic 60.0%
CTATGGTGGCTACGCGCGAA+AGG + chr2.4:56553509-56553528 MS.gene058233:CDS 60.0%
CTTTCGCGCGTAGCCACCAT+AGG - chr2.4:56553511-56553530 None:intergenic 60.0%
TTAGACGGCCGTCCGATGAG+TGG + chr2.4:56552792-56552811 MS.gene058233:CDS 60.0%
! CAAGGGCGTGAACAGTCCGA+TGG - chr2.4:56551737-56551756 None:intergenic 60.0%
!! ACGGAGCGCTGCTATGGCTG+TGG + chr2.4:56551971-56551990 MS.gene058233:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 56550846 56553801 56550846 ID=MS.gene058233
chr2.4 mRNA 56550846 56553801 56550846 ID=MS.gene058233.t1;Parent=MS.gene058233
chr2.4 exon 56550846 56550903 56550846 ID=MS.gene058233.t1.exon1;Parent=MS.gene058233.t1
chr2.4 CDS 56550846 56550903 56550846 ID=cds.MS.gene058233.t1;Parent=MS.gene058233.t1
chr2.4 exon 56550988 56551191 56550988 ID=MS.gene058233.t1.exon2;Parent=MS.gene058233.t1
chr2.4 CDS 56550988 56551191 56550988 ID=cds.MS.gene058233.t1;Parent=MS.gene058233.t1
chr2.4 exon 56551311 56551460 56551311 ID=MS.gene058233.t1.exon3;Parent=MS.gene058233.t1
chr2.4 CDS 56551311 56551460 56551311 ID=cds.MS.gene058233.t1;Parent=MS.gene058233.t1
chr2.4 exon 56551714 56551847 56551714 ID=MS.gene058233.t1.exon4;Parent=MS.gene058233.t1
chr2.4 CDS 56551714 56551847 56551714 ID=cds.MS.gene058233.t1;Parent=MS.gene058233.t1
chr2.4 exon 56551959 56552028 56551959 ID=MS.gene058233.t1.exon5;Parent=MS.gene058233.t1
chr2.4 CDS 56551959 56552028 56551959 ID=cds.MS.gene058233.t1;Parent=MS.gene058233.t1
chr2.4 exon 56552139 56552229 56552139 ID=MS.gene058233.t1.exon6;Parent=MS.gene058233.t1
chr2.4 CDS 56552139 56552229 56552139 ID=cds.MS.gene058233.t1;Parent=MS.gene058233.t1
chr2.4 exon 56552398 56552467 56552398 ID=MS.gene058233.t1.exon7;Parent=MS.gene058233.t1
chr2.4 CDS 56552398 56552467 56552398 ID=cds.MS.gene058233.t1;Parent=MS.gene058233.t1
chr2.4 exon 56552586 56552681 56552586 ID=MS.gene058233.t1.exon8;Parent=MS.gene058233.t1
chr2.4 CDS 56552586 56552681 56552586 ID=cds.MS.gene058233.t1;Parent=MS.gene058233.t1
chr2.4 exon 56552792 56552891 56552792 ID=MS.gene058233.t1.exon9;Parent=MS.gene058233.t1
chr2.4 CDS 56552792 56552891 56552792 ID=cds.MS.gene058233.t1;Parent=MS.gene058233.t1
chr2.4 exon 56553245 56553328 56553245 ID=MS.gene058233.t1.exon10;Parent=MS.gene058233.t1
chr2.4 CDS 56553245 56553328 56553245 ID=cds.MS.gene058233.t1;Parent=MS.gene058233.t1
chr2.4 exon 56553439 56553530 56553439 ID=MS.gene058233.t1.exon11;Parent=MS.gene058233.t1
chr2.4 CDS 56553439 56553530 56553439 ID=cds.MS.gene058233.t1;Parent=MS.gene058233.t1
chr2.4 exon 56553670 56553801 56553670 ID=MS.gene058233.t1.exon12;Parent=MS.gene058233.t1
chr2.4 CDS 56553670 56553801 56553670 ID=cds.MS.gene058233.t1;Parent=MS.gene058233.t1
Gene Sequence

>MS.gene058233

ATGGCTGGTCTGAGATTTTTCTGCGCCACAAATATCTCTGTTTCAACAAAACACAACGGTTCTTCTAAAACTCTTTTTTACACTCTCTATATCTATCTATATGTATCTAACATACTTATGAAATGAATGTGCTTAATTCCAGCAAAAGTGGATAAGAAATGTGTTGTTCATCAGAAGGTTAAGAACCTCATCAACACTTTGGAGCTTCCTTCCATTTCATCATCGTCGTCATCAACTCCACTTGAGTCTCTCCAGAGAGGTAATTGGGTGAAGCTCATTTGTGGTGCAAGTTTTGAGGATGTTGTTGATATCAAAAATCTCAGTTTGGTTTACACTCTTGCTGGAGGTGATTAATAACATTAATAAGCTTTTCTAATATTTATATGATAAACACTTATATAACTATACTTAATTACATTGTTTAACCAAGCAAATTCAAGAATTGGATTATGTGGTTGATTGCAGTTGACTGCATTGACTGTGCTGCTGATGCATCTGTTGTGAGTGCTGTGAATGAAGGAATTGAAGCGGCAAGAGACATCTTATGCTGCCTTAGAAGGCCTTGGGTTATGATCAGTGTCAATGATGATAAAGATCTTCACTTTCGCAAAGCCGGTAAGACAGTTCTTATTCAACTTAATTGTTCAATACATCAAAAATCTTATCGCACATTTCTACATTTAAAACTTTTGGAAGGCAATGATATTTGCATTGAATCTTCATTTACAGTAACTTTATACATGTAAGCAAAACATAGTGTCATATGAATATCATGTAGCTTGTTTATATACATAATTTAATAAAATATAAACTTTAATCTATGCTTACTGGTAATCACTCAATGTTGTTAGTAAATCCTTCTTAACAGAATTTGATCCTGAGGACTGTCCATCGGACTGTTCACGCCCTTGCGAAAATGTTTGCCCTGCTAATGCAATCTCATTCCAGGAGAAATCTACTTCACAAACTTCATGTAACACCGAAACACCAAGAGTACTGAAGGTTTTAACTTAATTTTACTCAAAATATCAAAGTTTGTGTTATTCTGATAAACATAAAAGTTGTCTTTTTAAAATATAAAACTTGTAATGTTGAATTGGATTTAACATGCAGGACGGAGTCATAACGGAGCGCTGCTATGGCTGTGGTCGCTGTCTTCCAGTTTGCCCCTATGATAAAATAAGTAGGATATTTTCTAGTTCCATCTGATATTATAAATTCTTAGTTTTCCCTTAATTATTTTTGTGTAATCTTATTGAATTTTCAACAATATATACTTTTCATATTGATCAGGAGAGGTAACATATGTAAGAGATGCTGTTACAACTTCTGATCTCATCAAGAGAAACGATGTTGATGCTATAGAAATCCATACAAGTGCAAGGTAATATTAGTGTTCCTGAAATACTAGAATATAACTGCAATTGCTATGAAAATACATTTCATGATTGCTATTCACAAAGTTTTATTAATCAAGTAATTAATGTTATTTCTATGATCTTTGATTGATTTTTCAAAATCCATTTCCTTGTGTCGATGCATCCTTCTATAGGCAGAGTAGACTGTTTGAAGAACATTGGCGTGCTTTAGGAGATTCAGTAGAAAATTTGAAGCTAGTAGCCGTAAGTGGTGCCTTCAACCTCTTCTAATATTTAAGGGGTTATAGTATTAGCTTTCCATAAATACTTGTTTTAAGGCTATTTTCATTTAATTCAACAATTTACTATTGAAATGATCCAGGTTAGTTTACCTAATGTTGGAGATTCAACAATACCTTCTATGAACAAAATGTTCTCTATTATGAAACCAAATCTTAGAAACTTCAACTTATGGCAGGTGTGGCATTTCTCTCTTTTCAACAGATTGATCAATTTTATATTCTTTTAAGCCAAATTCTATTCCATGTTTATTTTAACAAACCCATCTTTGCCATGTATAAACTAAAGTTAGACGGCCGTCCGATGAGTGGAGATATTGGGAGAGGAGCAACTAAGGAGTCAATAGCCTTTGCTGCTCAATTGGCTAAAGCAAAAGATAGACCTCCTGGTTCGTATTCACAATTCAATCAACAGTACTTTGAAAATCTTCACAAGACCCGTTTGATGGTCATGATAGAGACGGATAGGATATGGGCATGATAAGATCTTATCCTGTCATGTTGGTTTCTAACTCAGCCTCAACTCAGGATAAGATTTTAACGAGATAGGCAGGATATGATATGTGACATGGTCAAGTTATCGTATCATGATGGCTCCTTAAACACTGGATTGAGACATGATATGAATCTATGATGGTTTAACTTTATCCTATCATGTCTCTCTCATCCTGGCCATTGATCGGGCCTTTAGGATTTATATCTATCATGATTCGACTAATGTTTCATTCCCTTAACATGGCAGGCTTTCTTCAACTTGCTGGTGGAACTAATGCTCACACAATTGAAGGATTGAAAAAAGAAGGACTCTTTCAAACAACTAGTTTAAGTAATGCTGTCACGTAGTTACTTGATACTTTCTCTTTTCTATTCTCACTTGCATTATAAGCATTCTTTTCTATTCTCACTTGCATTATAAGCATTCTTGTTTGTTTCCAGAATACTTGGATCATGAAAATTCAACAATCAGTACATCTAATCCATCACAAGCTTTAATTAGCGGCATAGCCTATGGTGGCTACGCGCGAAAGGTAACACAACTACTTTTGTATGTCTGATTATTCATTTTCCATTCTGTTTCTGTTCTAAATTTTCTGTGGTTAGATAAAGTAATAGATTTCAGTCACAACTAGAGTCACATTATGTGATGACATTGGCATACATGTTCAGATTGTTGGTAGAGTATTGAGATCCATGCAATCCCAACATGGTGGAGCTGCTTCAATTGAAGATCATCCTGAGCATCTCTTATTGGCTCTAAGGGAAGCTCTTGCTTTGGTTGGACCTGTTAAATGTCTATAA

Protein sequence

>MS.gene058233.t1

MAGLRFFCATNISVSTKHNAKVDKKCVVHQKVKNLINTLELPSISSSSSSTPLESLQRGNWVKLICGASFEDVVDIKNLSLVYTLAGVDCIDCAADASVVSAVNEGIEAARDILCCLRRPWVMISVNDDKDLHFRKAEFDPEDCPSDCSRPCENVCPANAISFQEKSTSQTSCNTETPRVLKDGVITERCYGCGRCLPVCPYDKIREVTYVRDAVTTSDLIKRNDVDAIEIHTSARQSRLFEEHWRALGDSVENLKLVAVSLPNVGDSTIPSMNKMFSIMKPNLRNFNLWQLDGRPMSGDIGRGATKESIAFAAQLAKAKDRPPGFLQLAGGTNAHTIEGLKKEGLFQTTSLKYLDHENSTISTSNPSQALISGIAYGGYARKIVGRVLRSMQSQHGGAASIEDHPEHLLLALREALALVGPVKCL