AlfalfaGEDB | MS.gene95348

M. sativa cultivar XinJiangDaYe / MS.gene95348

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95348.t1	XP_013466626.1	89.9	929	92	2	1	928	1	928	0.00E+00	1564.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95348.t1	P43298	52.5	923	402	15	30	928	32	942	7.2e-223	775.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95348.t1	A0A072VFS8	89.9	929	92	2	1	928	1	928	0.0e+00	1564.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051588	MS.gene95348	0.811329	7.39E-51	-1.69E-46
MS.gene052253	MS.gene95348	0.822549	2.23E-53	-1.69E-46
MS.gene052414	MS.gene95348	0.803988	2.68E-49	-1.69E-46
MS.gene054102	MS.gene95348	0.803355	3.63E-49	-1.69E-46
MS.gene054183	MS.gene95348	0.838854	2.24E-57	-1.69E-46
MS.gene054920	MS.gene95348	0.804812	1.80E-49	-1.69E-46
MS.gene055369	MS.gene95348	0.811346	7.33E-51	-1.69E-46
MS.gene056514	MS.gene95348	0.814587	1.43E-51	-1.69E-46
MS.gene057396	MS.gene95348	0.810009	1.43E-50	-1.69E-46
MS.gene059011	MS.gene95348	0.802901	4.50E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95348.t1	MTR_1g033010	91.389	929	78	2	1	928	1	928	0.0	1670
MS.gene95348.t1	MTR_1g033000	82.422	933	159	3	1	928	1	933	0.0	1551
MS.gene95348.t1	MTR_1g033040	82.051	936	160	2	1	928	1	936	0.0	1493
MS.gene95348.t1	MTR_8g106100	61.589	919	332	8	1	909	6	913	0.0	1115
MS.gene95348.t1	MTR_5g077430	57.082	946	376	13	5	928	8	945	0.0	993
MS.gene95348.t1	MTR_3g084510	49.045	942	431	14	11	928	17	933	0.0	820
MS.gene95348.t1	MTR_8g083240	47.905	931	434	18	19	928	16	916	0.0	754
MS.gene95348.t1	MTR_7g106210	44.156	924	453	22	44	928	43	942	0.0	696
MS.gene95348.t1	MTR_2g087230	42.333	926	474	17	44	928	47	953	0.0	642
MS.gene95348.t1	MTR_4g051605	54.762	420	173	2	517	928	551	961	6.35e-148	462

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95348.t1	AT1G66150	56.095	927	371	14	26	928	28	942	0.0	990
MS.gene95348.t1	AT2G01820	54.731	930	379	15	26	928	29	943	0.0	962
MS.gene95348.t1	AT1G24650	51.305	881	380	17	11	877	8	853	0.0	810
MS.gene95348.t1	AT3G23750	48.462	910	419	17	45	928	43	928	0.0	783
MS.gene95348.t1	AT3G13380	29.063	843	494	22	62	855	351	1138	6.93e-81	285
MS.gene95348.t1	AT3G13380	27.835	388	222	13	88	436	177	545	1.88e-20	98.2
MS.gene95348.t1	AT3G13380	29.812	426	247	16	34	431	42	443	3.19e-19	94.0
MS.gene95348.t1	AT2G26330	26.500	1000	515	33	8	865	7	928	1.08e-78	276
MS.gene95348.t1	AT5G07280	31.391	841	448	28	67	855	429	1192	1.97e-78	278
MS.gene95348.t1	AT5G07280	27.083	432	218	12	52	431	55	441	1.15e-18	92.4

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Find 215 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATATTGGGGAAAGGC+GGG	0.530084	1.3:+18208040	MS.gene95348:CDS
AAAATAAGTGTTGCAGCAGC+CGG	0.505879	1.3:+18207886	MS.gene95348:CDS
AAACAATTCTTAAGACTAGA+AGG	0.392101	1.3:-18206758	None:intergenic
AAACCATCAAATATCTTGCT+TGG	0.450600	1.3:+18208423	MS.gene95348:CDS
AAAGATCATTGATCCATCAA+TGG	0.510212	1.3:+18209472	MS.gene95348:CDS
AAAGATTGTTGCAAATGGAA+GGG	0.645401	1.3:+18206458	MS.gene95348:CDS
AAATGTGGAAGCTGGTAATA+TGG	0.411677	1.3:+18207969	MS.gene95348:CDS
AACAATTGTTGGGATTGTGC+TGG	0.459661	1.3:+18207726	MS.gene95348:CDS
AACACCTCTAGCAACATCCA+AGG	0.655080	1.3:-18208352	None:intergenic
AACATCTAGCTCTTTCAAAG+CGG	0.646103	1.3:-18207554	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCATCAAATATCTTGCT+TGG	+	chr1.3:18208423-18208442	MS.gene95348:CDS	30.0%
AAAGATCATTGATCCATCAA+TGG	+	chr1.3:18209472-18209491	MS.gene95348:CDS	30.0%
AAAGATTGTTGCAAATGGAA+GGG	+	chr1.3:18206458-18206477	MS.gene95348:CDS	30.0%
ACATCATCTTTAAACTTAGG+AGG	-	chr1.3:18207199-18207218	None:intergenic	30.0%
AGTTAGCAATTGAACAAGAA+AGG	-	chr1.3:18209266-18209285	None:intergenic	30.0%
AGTTTAAGAGGATAACCAAA+AGG	-	chr1.3:18207325-18207344	None:intergenic	30.0%
ATCAGCAGATGTAAAAGAAT+TGG	-	chr1.3:18209819-18209838	None:intergenic	30.0%
ATTAGCAGAAAAAAGCTCAA+GGG	-	chr1.3:18206786-18206805	None:intergenic	30.0%
ATTCTTATGGAGATGATAAC+CGG	+	chr1.3:18209359-18209378	MS.gene95348:CDS	30.0%
ATTGTTTGCTTAATTGGTGT+AGG	+	chr1.3:18207751-18207770	MS.gene95348:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	18206314	18209847	18206314	ID=MS.gene95348
chr1.3	mRNA	18206314	18209847	18206314	ID=MS.gene95348.t1;Parent=MS.gene95348
chr1.3	exon	18206314	18208564	18206314	ID=MS.gene95348.t1.exon1;Parent=MS.gene95348.t1
chr1.3	CDS	18206314	18208564	18206314	ID=cds.MS.gene95348.t1;Parent=MS.gene95348.t1
chr1.3	exon	18209312	18209847	18209312	ID=MS.gene95348.t1.exon2;Parent=MS.gene95348.t1
chr1.3	CDS	18209312	18209847	18209312	ID=cds.MS.gene95348.t1;Parent=MS.gene95348.t1

Gene Sequence

>MS.gene95348

ATGAGTTTCGGAGTTTCCTATGTTCTTCACCTTGTTTTACTGTTTTTTATGATGTTTGTTGCTGCATGGTCTCAAGATGATGTTGTCATGCAAAAGCTCAAAAGTTCTATAAAATCATCAAGCAATGATCTTGATTGGTCGGACAAAGATTGTTGCAAATGGAAGGGAGTTTCGTGTAGCGGAACGACGGTCACTGAAATTAATCTTGGACAACTCAATCTTCAAGGTTCTTTACCAAAAGAATTAATGCAGCTCACTGCTTTAACCCGTTTCGACTGCAGTCAAAATGGTTTTTCTGGTGATTTTCCTCACATGCCAAATTCACTTCAGAAGTTGTATATCAGCAACAACAGTTTCACTTCTATGCCAAGTGATTTCTTCACCAACATGAGTAATTTGATAGAGGTGGTAATTGATTCTAACCCTTTTTCTCAGTGGCAAATTCCTTCTAGTCTTAAGAATTGTTTAGCCCTTGAGCTTTTTTCTGCTAATAGTGCTGGTTTAGTTGGTGTAATCCCTGAATTCTTTGGAAATGACACTTTTCCTAGTTTGACAGATTTGAAGGTGTCTTTCAATTTCCTTGAAGGTAATTTGCCTAATAGTTTATCTGGTAGTTCTATACAGAACCTTTGGGTAAATGGTCAAAAGAGTAATAATAAACTCAATGGCACACTTTCTGTTTTGCAAAATATGACATCATTGAAACAAATTTGGGTTCATGGTAATGCTTTTACTGGTCCTATACCTGATTTATCGAATCATGATCAATTGTTTGATGTTAGTTTGAGAGATAATCAGTTAACCGGTGTTGTTCCACCGTCTTTAACTTCGCTTCAAAGTTTAACAGTTGTTAATTTGACTAACAATTATCTTCAAGGGTCACCTCCTAAGTTTAAAGATGATGTTAAGGTTGATAATGATATGGATAAAGGGATCAATAGCTTTTGCATTAAGGTTGTTGGTCAACCATGTAGTCCACTTGTTAATGCTTTGCTCTCTGTTGTTGAACCTTTTGGTTATCCTCTTAAACTTGCTCAAAGTTGGAAAGATAATGACCCTTGTGGTAATAATTGGTTAGGAGTTGTTTGTTCTAGTGGCAACATTACCATTATCGACTTTCAAAACAAGGGTTTTACTGGCAGTATATCTCCTAATTTTGCAAGTCTTAGTTCTTTGACAAAGTTGCTTCTTGCTAACAATCATCTCGTCGGCACTATACCTAAAGAGCTTGCTAGTATGCCCGCTTTGAAAGAGCTAGATGTTTCGAATAATGCATTGTATGGTCAGATACCGTCGTTTCGAGGAGATGTGATTGTTAAAACCGGTGGAAATCCTGATATTGGAAAGGACAAACCTCCTGGCTCGCCCGGCTCTAGTCCTGGAGGTGAATATAAGAAGAAAATTAGTGTTGGAACAATTGTTGGGATTGTGCTGGGGATTGTTTGCTTAATTGGTGTAGGGGTTTTGGTATTTGTTATGCGCGGTAGAAGACATAATAAGCGTGATGGTAAAGTTCAAACTCCAAATGCAATAGTGGTACATCCTCGTCATTCAGGTGATGGAAATGGCGTGAAAATAAGTGTTGCAGCAGCCGGAAGTTCCACTGTCGGCGTTGCAGGAGGAACTGGTGGATTTAGTCCATCTAGTAGTGTTCGAAATGTGGAAGCTGGTAATATGGTGATTTCAATTCAAGTTTTACGAGAAGTTACAAACAATTTTAGCGAAGAAAACATATTGGGGAAAGGCGGGTTCGCTACTGTTTACAAAGGAGAATTGGACGATGGAACAAAGATTGCAGTGAAAAGGATGAAATCTGAAATGGTTGGTGACGAAGGGTTGAATGAGATCAAGTCCGAAATCGCAGTTCTCACTAAGGTTCGACACAGGCATTTAGTTGCACTCCATGGCTATTGCTTGGACGACAACGAGAAACTTCTTGTCTTTGAATACATGCCTCAGGGAACTCTTAGTCAACATCTCTTTGACTGGAAAGACAATGGGTCAAAACCGCTCGGATGGAAATGTAGGCTTTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCACAGCAAATTTTCATCCACAGGGATCTGAAACCATCAAATATCTTGCTTGGAGATGATATGCATGCTAAAGTAGCCGACTTTGGATTAGTTCGGCTTGCTCCAGAAGGACAAACTTCATTCGCGACTCGACTTGCAGGAACTTTTGGTTATTTGGCACCAGAGTATGCAGGTACGTGATCACATGTTAATTATAATTTAGAATATTTTTTGTTGTATTACTGTTTTTTTTTGCAAATGTTAATTGTGTAGGTTCCTACTTTAGTCTCAGATGAACTGCGGAAACAATTTTTTGCAACATTCTCAGATGACAAATTGTTTTATTAAATTTACTAGGGGATTAAAAATTGATCTAAAATCAGGTTTGTTTTATCTTACTATGTGAGAAAATGAATCTTAAGGATTTTCAAAGTATTTGTTTAAACTTTTGAAAATAAATAGAATCTTTAAAATGACTGAAATTTGATTATAGTGAAAAGTTGTGTAGCTGCTGAAAAACTATCTGAATAAGTGTGAAAAGTGAGAGAAATTACTAAAAAAGTGATTTTTATGATTGTAAAGAAACACAACCAAATTTATGCATTGTATAAAAATCTTTATATAGCATTCGATTTTTATACAACCTTCAATCACTTTCTTTATTCTTAATCAACCAGGTCCTTATCATCTGTAGCCAATTCACAGGCATTGTGTTATTCCCTATACTTCGCCGATTGATTTATAGTTTTTAGTTCATTAGGAAGAATATTTGGTGCTAGACTTCGTAAAAACGGGCAAACATGATTCATATTGTTCGTGTGATTCTCTGTCTGTGTTTCTATATTTTGTTGTTAAATGTTATATAAATTCTAGCATATTCGTAATTCTTCTCCTTTCTTGTTCAATTGCTAACTCATTTAATTGGTATGATATGTCGCAGTCACTGGTCGAGTCACCACAAAGGTAGACGTATACAGCTATGGCGTGATTCTTATGGAGATGATAACCGGAAGAAAAGTAATTGAGAACAGCCAACCAGACGAGAATATCCACCTCGTTACATGGTTCCGAAGGATGCTACTGAACAAAGACTCATTCGAAAAGATCATTGATCCATCAATGGACATAGACGAGGAAGGATTGGAGAGTTTCAGGACTTTTGCAGGATTGGCCAGCCAATGTTGCGCGAGGGAGCCTCATCAGCGTCCCGACATGGGACATGTAGTGAATGTGCTAGCACCTCTTGTCGAGATTTGGAAGCCGGCTGAACCTGATGCTGATGACATGTATGGGATTGACTTGGATATAAGTTTGCCTCAAGGACTTAGTAAGTGGCCGAATCTTGAAGGAACGAGCAATGCACTTGAAGTTTCGAATTCTTCTTCGATGGCTGCAAGTTGTGAGTATACACAGTCAAGCATCCCTCCTCGGTCTCCTGGATTTGCCAATTCTTTTACATCTGCTGATGCACGATGA

Protein sequence

>MS.gene95348.t1

MSFGVSYVLHLVLLFFMMFVAAWSQDDVVMQKLKSSIKSSSNDLDWSDKDCCKWKGVSCSGTTVTEINLGQLNLQGSLPKELMQLTALTRFDCSQNGFSGDFPHMPNSLQKLYISNNSFTSMPSDFFTNMSNLIEVVIDSNPFSQWQIPSSLKNCLALELFSANSAGLVGVIPEFFGNDTFPSLTDLKVSFNFLEGNLPNSLSGSSIQNLWVNGQKSNNKLNGTLSVLQNMTSLKQIWVHGNAFTGPIPDLSNHDQLFDVSLRDNQLTGVVPPSLTSLQSLTVVNLTNNYLQGSPPKFKDDVKVDNDMDKGINSFCIKVVGQPCSPLVNALLSVVEPFGYPLKLAQSWKDNDPCGNNWLGVVCSSGNITIIDFQNKGFTGSISPNFASLSSLTKLLLANNHLVGTIPKELASMPALKELDVSNNALYGQIPSFRGDVIVKTGGNPDIGKDKPPGSPGSSPGGEYKKKISVGTIVGIVLGIVCLIGVGVLVFVMRGRRHNKRDGKVQTPNAIVVHPRHSGDGNGVKISVAAAGSSTVGVAGGTGGFSPSSSVRNVEAGNMVISIQVLREVTNNFSEENILGKGGFATVYKGELDDGTKIAVKRMKSEMVGDEGLNEIKSEIAVLTKVRHRHLVALHGYCLDDNEKLLVFEYMPQGTLSQHLFDWKDNGSKPLGWKCRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMHAKVADFGLVRLAPEGQTSFATRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRKVIENSQPDENIHLVTWFRRMLLNKDSFEKIIDPSMDIDEEGLESFRTFAGLASQCCAREPHQRPDMGHVVNVLAPLVEIWKPAEPDADDMYGIDLDISLPQGLSKWPNLEGTSNALEVSNSSSMAASCEYTQSSIPPRSPGFANSFTSADAR