AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059462


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059462.t1 MTR_1g009230 98.430 446 7 0 1 446 1 446 0.0 896
MS.gene059462.t1 MTR_3g054010 32.667 450 281 7 13 443 1 447 7.11e-79 252
MS.gene059462.t1 MTR_2g025160 33.005 406 255 3 54 443 25 429 1.24e-71 233
MS.gene059462.t1 MTR_8g080210 29.440 411 266 6 45 439 42 444 3.34e-56 194
MS.gene059462.t1 MTR_2g025160 31.044 364 234 3 54 401 25 387 1.24e-52 182
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059462.t1 AT2G21080 60.291 413 137 10 40 445 21 413 6.39e-162 463
MS.gene059462.t1 AT3G20300 35.225 423 252 4 41 443 29 449 5.76e-84 265
MS.gene059462.t1 AT1G50630 35.714 406 228 6 53 429 35 436 3.99e-79 253
MS.gene059462.t1 AT1G50630 37.748 302 186 2 53 354 35 334 6.87e-66 218
MS.gene059462.t1 AT4G03820 31.332 383 243 4 68 431 40 421 3.03e-58 197
MS.gene059462.t1 AT4G22270 31.552 393 252 3 68 444 43 434 7.17e-58 197
MS.gene059462.t1 AT4G03820 31.332 383 243 4 68 431 40 421 7.35e-58 197
MS.gene059462.t1 AT4G03820 31.332 383 243 4 68 431 89 470 7.58e-58 198
MS.gene059462.t1 AT4G22270 31.316 380 244 3 68 431 43 421 1.51e-57 196
MS.gene059462.t1 AT4G03820 31.332 383 243 4 68 431 89 470 2.07e-57 197
MS.gene059462.t1 AT1G67570 30.500 400 248 6 66 444 62 452 6.40e-56 192
MS.gene059462.t1 AT1G67570 33.065 248 159 2 117 364 112 352 1.18e-40 150

Find 73 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAAGAGCACACCATTTA+AGG 0.198157 1.3:-10888399 None:intergenic
AGAAGCAGGTGTTATATTTA+AGG 0.203283 1.3:+10889378 MS.gene059462:CDS
GGCTTCTTCTTGTGCATCTT+AGG 0.235318 1.3:+10889743 MS.gene059462:CDS
GAGAAGACATTCTTCAATTC+TGG 0.252926 1.3:+10889529 MS.gene059462:CDS
GGGTTCTCTATTGCTAGTTT+TGG 0.258616 1.3:+10889495 MS.gene059462:CDS
ACTTTCGGATATGCCTTAAA+TGG 0.275331 1.3:+10888386 MS.gene059462:CDS
AAGCAGATACTTGAACAAAT+AGG 0.282476 1.3:-10888498 None:intergenic
TGAGGATTAGAAGGCAATTA+TGG 0.287173 1.3:+10889407 MS.gene059462:CDS
AGAGGAATTATCAATGTTAA+TGG 0.296185 1.3:-10888251 None:intergenic
TACAATGAGTGTTAGTCAAT+TGG 0.314349 1.3:+10889474 MS.gene059462:CDS
TTGTATTTATGTTACTTTCA+TGG 0.331455 1.3:+10889245 MS.gene059462:CDS
TTTCAGACTAGACAATCTTT+AGG 0.339756 1.3:+10889956 MS.gene059462:CDS
GTCAGAGAAAGATACTCTTT+TGG 0.360397 1.3:-10888275 None:intergenic
TCCTTGGTTGATTCTGTTGA+AGG 0.377806 1.3:-10888223 None:intergenic
AATGTTAATGGTTGTGTCCT+TGG 0.382680 1.3:-10888239 None:intergenic
CTTCAAATATTGAGATTTGA+AGG 0.390973 1.3:+10889325 MS.gene059462:CDS
AGGAACATGTGAGGATTAGA+AGG 0.398671 1.3:+10889398 MS.gene059462:CDS
TTGAATTCTCCATAGTGCTT+TGG 0.398782 1.3:+10890482 MS.gene059462:CDS
CTTTCATGGCTGTACAGAAC+TGG 0.398954 1.3:+10889259 MS.gene059462:CDS
ATGATGGCAAGTGCAGATTC+AGG 0.410877 1.3:-10888568 None:intergenic
AGCAGATACTTGAACAAATA+GGG 0.411563 1.3:-10888497 None:intergenic
TTGATGAACTAAGAAACTTT+CGG 0.420225 1.3:+10888371 MS.gene059462:CDS
ACAAACACAATTGAGTGTAT+TGG 0.427450 1.3:-10889226 None:intergenic
ACAATGAGTGTTAGTCAATT+GGG 0.429137 1.3:+10889475 MS.gene059462:CDS
ACAAGCTTGTTCAAGGAGAT+AGG 0.430827 1.3:-10888538 None:intergenic
AGTGCTTTGGATTCTGAGTA+AGG 0.442534 1.3:+10890495 MS.gene059462:CDS
TCTTAGTTCATCAAAGATCA+TGG 0.445556 1.3:-10888362 None:intergenic
CTCTCTACCGTTTCTTCCGA+AGG 0.449304 1.3:+10888602 MS.gene059462:CDS
ACTCAGAATCCAAAGCACTA+TGG 0.455666 1.3:-10890491 None:intergenic
GGAAATCCAGCACTAAGGTT+TGG 0.455769 1.3:-10889205 None:intergenic
TGTGTTGTTGCTGTTGCTGT+TGG 0.458307 1.3:-10888297 None:intergenic
CCCATGGTTGTGTTGTAGAT+AGG 0.469534 1.3:-10890401 None:intergenic
CAAATCTCAATATTTGAAGC+TGG 0.469941 1.3:-10889321 None:intergenic
GAAACGGTAGAGAGTGAAGA+AGG 0.481723 1.3:-10888593 None:intergenic
TTGTTTCAATTGCAACAAGA+TGG 0.484621 1.3:+10889798 MS.gene059462:CDS
TATTTGAACAAGCTTGTTCA+AGG 0.484907 1.3:-10888545 None:intergenic
GAGAGTGAAGAAGGAAATGA+TGG 0.494904 1.3:-10888584 None:intergenic
TCAGCACCAAACCTTAGTGC+TGG 0.495418 1.3:+10889199 MS.gene059462:CDS
AATTATGGATTATAAGTCAT+AGG 0.501167 1.3:+10889422 MS.gene059462:CDS
CTTGATCACTCATCTTGTGT+TGG 0.518508 1.3:+10888415 MS.gene059462:CDS
TAAAGATTGTCTAGTCTGAA+AGG 0.525351 1.3:-10889954 None:intergenic
GAAGGGTGTGGATCAGAAGC+AGG 0.525748 1.3:+10889364 MS.gene059462:CDS
ATCAGAATCACTACTATCAC+TGG 0.527982 1.3:-10889888 None:intergenic
CCTATCTACAACACAACCAT+GGG 0.534196 1.3:+10890401 MS.gene059462:CDS
CTAAGAATAGAAGTTGCCTT+AGG 0.539238 1.3:-10889030 None:intergenic
AAGGAGATAGGATCAACTTC+AGG 0.540232 1.3:-10888526 None:intergenic
AGAGAGGAACAATGAAAGTG+AGG 0.542144 1.3:-10888468 None:intergenic
CTTCAATTCTGGTGACCTTG+TGG 0.547529 1.3:+10889540 MS.gene059462:CDS
TTTGGTACCTTCGGAAGAAA+CGG 0.549992 1.3:-10888609 None:intergenic
AAAATCACACATAGAGCTCA+AGG 0.557605 1.3:+10889773 MS.gene059462:CDS
GCAAGTTCTACAAAGAAAGA+AGG 0.565294 1.3:-10889142 None:intergenic
GTTCTACAAAGAAAGAAGGT+AGG 0.566351 1.3:-10889138 None:intergenic
ATTCTTTATAATCTGTTGTG+TGG 0.569662 1.3:+10889450 MS.gene059462:CDS
AATGAAAGTGAGGAAGATGA+AGG 0.573099 1.3:-10888458 None:intergenic
GTATTGGAAATCCAGCACTA+AGG 0.581099 1.3:-10889210 None:intergenic
TATGATGCAGGTATGGCCTA+AGG 0.582377 1.3:+10889014 MS.gene059462:intron
GAATGCTTTCTCTAGCTCGC+GGG 0.594449 1.3:-10889095 None:intergenic
TAAGATGGTTGAAGTAACAA+AGG 0.601645 1.3:-10888325 None:intergenic
ACCTATCTACAACACAACCA+TGG 0.603127 1.3:+10890400 MS.gene059462:CDS
TATGGGTTTGCACTTGATCG+AGG 0.603951 1.3:+10890436 MS.gene059462:CDS
TATTGATATATGTATGTCTG+AGG 0.613114 1.3:-10889912 None:intergenic
ACAAATAGGGTTGTGAAGAG+AGG 0.616885 1.3:-10888484 None:intergenic
GAAAGGAAGAGAGTCTCTGT+GGG 0.624738 1.3:-10889937 None:intergenic
TGAATGCTTTCTCTAGCTCG+CGG 0.629956 1.3:-10889096 None:intergenic
TGTTCAGCAGTGCAATTGAG+TGG 0.630731 1.3:+10889722 MS.gene059462:CDS
TGAAAGGAAGAGAGTCTCTG+TGG 0.638408 1.3:-10889938 None:intergenic
GCTTTGGATTCTGAGTAAGG+TGG 0.656572 1.3:+10890498 MS.gene059462:CDS
TTATATTTAAGGAACATGTG+AGG 0.659712 1.3:+10889389 MS.gene059462:CDS
TGCAACAAGATGGCACATGT+TGG 0.671190 1.3:+10889808 MS.gene059462:CDS
ACCTTCAACAGAATCAACCA+AGG 0.695999 1.3:+10888222 MS.gene059462:CDS
CTATCTACAACACAACCATG+GGG 0.709943 1.3:+10890402 MS.gene059462:CDS
GACACTACATATGTTCGTCG+CGG 0.737129 1.3:+10889067 MS.gene059462:CDS
TATCTACAACACAACCATGG+GGG 0.737474 1.3:+10890403 MS.gene059462:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGAAAAACTTTCTATTTA+AGG - chr1.3:10889671-10889690 None:intergenic 15.0%
!! AATGCAAGAAGAAAAATATT+AGG - chr1.3:10888772-10888791 None:intergenic 20.0%
!! TTCAATAGAATTAATCAAAG+CGG + chr1.3:10888843-10888862 MS.gene059462:intron 20.0%
!!! AATTATGGATTATAAGTCAT+AGG + chr1.3:10889422-10889441 MS.gene059462:CDS 20.0%
!!! ACTATGATGAAAAATTGTTT+TGG - chr1.3:10888630-10888649 None:intergenic 20.0%
!!! CTGAAAATGTTATTTTTACT+TGG - chr1.3:10888903-10888922 None:intergenic 20.0%
!!! TTGTATTTATGTTACTTTCA+TGG + chr1.3:10889245-10889264 MS.gene059462:CDS 20.0%
! AGAGGAATTATCAATGTTAA+TGG - chr1.3:10888254-10888273 None:intergenic 25.0%
! ATTCTTTATAATCTGTTGTG+TGG + chr1.3:10889450-10889469 MS.gene059462:CDS 25.0%
! CTTCAAATATTGAGATTTGA+AGG + chr1.3:10889325-10889344 MS.gene059462:CDS 25.0%
! TAGTGTATGTTTGTAACTTA+GGG - chr1.3:10888983-10889002 None:intergenic 25.0%
! TATTGATATATGTATGTCTG+AGG - chr1.3:10889915-10889934 None:intergenic 25.0%
! TTAGTGTATGTTTGTAACTT+AGG - chr1.3:10888984-10889003 None:intergenic 25.0%
! TTATATTTAAGGAACATGTG+AGG + chr1.3:10889389-10889408 MS.gene059462:CDS 25.0%
! TTGATGAACTAAGAAACTTT+CGG + chr1.3:10888371-10888390 MS.gene059462:CDS 25.0%
!! ACAATTTTATTATTTCGCCT+AGG - chr1.3:10888735-10888754 None:intergenic 25.0%
!! AGTTTTTCTAATTGTGTGAT+TGG + chr1.3:10889680-10889699 MS.gene059462:intron 25.0%
!! CAATTTTATTATTTCGCCTA+GGG - chr1.3:10888734-10888753 None:intergenic 25.0%
!!! AAAAATTGTTTTGGTACCTT+CGG - chr1.3:10888621-10888640 None:intergenic 25.0%
!!! CACATTATCTTTTTCACTAT+TGG + chr1.3:10890341-10890360 MS.gene059462:intron 25.0%
AACTAAAATAAACACATCCG+AGG - chr1.3:10890111-10890130 None:intergenic 30.0%
AAGCAGATACTTGAACAAAT+AGG - chr1.3:10888501-10888520 None:intergenic 30.0%
ACAAACACAATTGAGTGTAT+TGG - chr1.3:10889229-10889248 None:intergenic 30.0%
ACAATGAGTGTTAGTCAATT+GGG + chr1.3:10889475-10889494 MS.gene059462:CDS 30.0%
ACATTAATGTACTTACCACA+AGG - chr1.3:10889558-10889577 None:intergenic 30.0%
AGAATTAATCAAAGCGGAAT+AGG + chr1.3:10888849-10888868 MS.gene059462:intron 30.0%
AGCAGATACTTGAACAAATA+GGG - chr1.3:10888500-10888519 None:intergenic 30.0%
TAAAGATTGTCTAGTCTGAA+AGG - chr1.3:10889957-10889976 None:intergenic 30.0%
TAAGATGGTTGAAGTAACAA+AGG - chr1.3:10888328-10888347 None:intergenic 30.0%
TACAATGAGTGTTAGTCAAT+TGG + chr1.3:10889474-10889493 MS.gene059462:CDS 30.0%
TCTTAGTTCATCAAAGATCA+TGG - chr1.3:10888365-10888384 None:intergenic 30.0%
TTGTTTCAATTGCAACAAGA+TGG + chr1.3:10889798-10889817 MS.gene059462:CDS 30.0%
TTTCAGACTAGACAATCTTT+AGG + chr1.3:10889956-10889975 MS.gene059462:CDS 30.0%
! AGAAGCAGGTGTTATATTTA+AGG + chr1.3:10889378-10889397 MS.gene059462:CDS 30.0%
! CAAATCTCAATATTTGAAGC+TGG - chr1.3:10889324-10889343 None:intergenic 30.0%
! TATTTGAACAAGCTTGTTCA+AGG - chr1.3:10888548-10888567 None:intergenic 30.0%
!! GATTTTGATCTTGCATAAGA+TGG - chr1.3:10888343-10888362 None:intergenic 30.0%
AAAATCACACATAGAGCTCA+AGG + chr1.3:10889773-10889792 MS.gene059462:CDS 35.0%
AAACCAATGTGTTATGATGC+AGG + chr1.3:10889002-10889021 MS.gene059462:intron 35.0%
AATGAAAGTGAGGAAGATGA+AGG - chr1.3:10888461-10888480 None:intergenic 35.0%
AATGTGTTATGATGCAGGTA+TGG + chr1.3:10889007-10889026 MS.gene059462:intron 35.0%
AATGTTAATGGTTGTGTCCT+TGG - chr1.3:10888242-10888261 None:intergenic 35.0%
ACTTTCGGATATGCCTTAAA+TGG + chr1.3:10888386-10888405 MS.gene059462:CDS 35.0%
ATACCTGCATCATAACACAT+TGG - chr1.3:10889008-10889027 None:intergenic 35.0%
ATCAGAATCACTACTATCAC+TGG - chr1.3:10889891-10889910 None:intergenic 35.0%
ATGGGGGAATAACATTGTAT+GGG + chr1.3:10890419-10890438 MS.gene059462:CDS 35.0%
CTAAGAATAGAAGTTGCCTT+AGG - chr1.3:10889033-10889052 None:intergenic 35.0%
GAGAAGACATTCTTCAATTC+TGG + chr1.3:10889529-10889548 MS.gene059462:CDS 35.0%
GCAAGTTCTACAAAGAAAGA+AGG - chr1.3:10889145-10889164 None:intergenic 35.0%
GTTCTACAAAGAAAGAAGGT+AGG - chr1.3:10889141-10889160 None:intergenic 35.0%
TGAAATTGTGATCACAGCTA+GGG + chr1.3:10888687-10888706 MS.gene059462:intron 35.0%
TGAGGATTAGAAGGCAATTA+TGG + chr1.3:10889407-10889426 MS.gene059462:CDS 35.0%
TTCTTAGTGAGTTTAGTCCT+CGG + chr1.3:10890091-10890110 MS.gene059462:intron 35.0%
TTGAAATTGTGATCACAGCT+AGG + chr1.3:10888686-10888705 MS.gene059462:intron 35.0%
TTGAATTCTCCATAGTGCTT+TGG + chr1.3:10890482-10890501 MS.gene059462:CDS 35.0%
TTTCAGTGCCCCTAAAAAAA+TGG + chr1.3:10888917-10888936 MS.gene059462:intron 35.0%
! GTCAGAGAAAGATACTCTTT+TGG - chr1.3:10888278-10888297 None:intergenic 35.0%
! GTGTTCACAAGCTTTTTGAA+GGG + chr1.3:10889347-10889366 MS.gene059462:CDS 35.0%
!! GAAAGATACTCTTTTGGAAG+AGG - chr1.3:10888272-10888291 None:intergenic 35.0%
AAGGAGATAGGATCAACTTC+AGG - chr1.3:10888529-10888548 None:intergenic 40.0%
ACAAATAGGGTTGTGAAGAG+AGG - chr1.3:10888487-10888506 None:intergenic 40.0%
ACCTATCTACAACACAACCA+TGG + chr1.3:10890400-10890419 MS.gene059462:CDS 40.0%
ACCTTCAACAGAATCAACCA+AGG + chr1.3:10888222-10888241 MS.gene059462:CDS 40.0%
AGAGAGGAACAATGAAAGTG+AGG - chr1.3:10888471-10888490 None:intergenic 40.0%
AGGAACATGTGAGGATTAGA+AGG + chr1.3:10889398-10889417 MS.gene059462:CDS 40.0%
CATACAATGTTATTCCCCCA+TGG - chr1.3:10890420-10890439 None:intergenic 40.0%
CATGGGGGAATAACATTGTA+TGG + chr1.3:10890418-10890437 MS.gene059462:CDS 40.0%
CCCTAAAAAAATGGTGTCCT+GGG + chr1.3:10888926-10888945 MS.gene059462:intron 40.0%
CCTATCTACAACACAACCAT+GGG + chr1.3:10890401-10890420 MS.gene059462:CDS 40.0%
CTATCTACAACACAACCATG+GGG + chr1.3:10890402-10890421 MS.gene059462:CDS 40.0%
CTTGATCACTCATCTTGTGT+TGG + chr1.3:10888415-10888434 MS.gene059462:CDS 40.0%
GAGAGTGAAGAAGGAAATGA+TGG - chr1.3:10888587-10888606 None:intergenic 40.0%
GTATTGGAAATCCAGCACTA+AGG - chr1.3:10889213-10889232 None:intergenic 40.0%
TATCTACAACACAACCATGG+GGG + chr1.3:10890403-10890422 MS.gene059462:CDS 40.0%
TTTGGTACCTTCGGAAGAAA+CGG - chr1.3:10888612-10888631 None:intergenic 40.0%
! ACAAGCTTGTTCAAGGAGAT+AGG - chr1.3:10888541-10888560 None:intergenic 40.0%
! ACTCAGAATCCAAAGCACTA+TGG - chr1.3:10890494-10890513 None:intergenic 40.0%
! AGTGCTTTGGATTCTGAGTA+AGG + chr1.3:10890495-10890514 MS.gene059462:CDS 40.0%
! GATCAAGAGCACACCATTTA+AGG - chr1.3:10888402-10888421 None:intergenic 40.0%
! GGTGTTCACAAGCTTTTTGA+AGG + chr1.3:10889346-10889365 MS.gene059462:CDS 40.0%
! TCCTTGGTTGATTCTGTTGA+AGG - chr1.3:10888226-10888245 None:intergenic 40.0%
!! GGGTTCTCTATTGCTAGTTT+TGG + chr1.3:10889495-10889514 MS.gene059462:CDS 40.0%
!!! CCAGGACACCATTTTTTTAG+GGG - chr1.3:10888928-10888947 None:intergenic 40.0%
!!! CCCAGGACACCATTTTTTTA+GGG - chr1.3:10888929-10888948 None:intergenic 40.0%
ATGATGGCAAGTGCAGATTC+AGG - chr1.3:10888571-10888590 None:intergenic 45.0%
CCCATGGTTGTGTTGTAGAT+AGG - chr1.3:10890404-10890423 None:intergenic 45.0%
CCCCTAAAAAAATGGTGTCC+TGG + chr1.3:10888925-10888944 MS.gene059462:intron 45.0%
CTTCAATTCTGGTGACCTTG+TGG + chr1.3:10889540-10889559 MS.gene059462:CDS 45.0%
CTTTCATGGCTGTACAGAAC+TGG + chr1.3:10889259-10889278 MS.gene059462:CDS 45.0%
GAAACGGTAGAGAGTGAAGA+AGG - chr1.3:10888596-10888615 None:intergenic 45.0%
GAAAGGAAGAGAGTCTCTGT+GGG - chr1.3:10889940-10889959 None:intergenic 45.0%
GACACTACATATGTTCGTCG+CGG + chr1.3:10889067-10889086 MS.gene059462:CDS 45.0%
GGAAATCCAGCACTAAGGTT+TGG - chr1.3:10889208-10889227 None:intergenic 45.0%
GGCTTCTTCTTGTGCATCTT+AGG + chr1.3:10889743-10889762 MS.gene059462:CDS 45.0%
TATGATGCAGGTATGGCCTA+AGG + chr1.3:10889014-10889033 MS.gene059462:intron 45.0%
TATGGGTTTGCACTTGATCG+AGG + chr1.3:10890436-10890455 MS.gene059462:CDS 45.0%
TGAAAGGAAGAGAGTCTCTG+TGG - chr1.3:10889941-10889960 None:intergenic 45.0%
TGCAACAAGATGGCACATGT+TGG + chr1.3:10889808-10889827 MS.gene059462:CDS 45.0%
TGTTCAGCAGTGCAATTGAG+TGG + chr1.3:10889722-10889741 MS.gene059462:CDS 45.0%
! GCTTTGGATTCTGAGTAAGG+TGG + chr1.3:10890498-10890517 MS.gene059462:CDS 45.0%
! TGAATGCTTTCTCTAGCTCG+CGG - chr1.3:10889099-10889118 None:intergenic 45.0%
! TGTGTTGTTGCTGTTGCTGT+TGG - chr1.3:10888300-10888319 None:intergenic 45.0%
!! CACAAGCTTTTTGAAGGGTG+TGG + chr1.3:10889352-10889371 MS.gene059462:CDS 45.0%
!!! GCCCAGGACACCATTTTTTT+AGG - chr1.3:10888930-10888949 None:intergenic 45.0%
ATTGTGATCACAGCTAGGGC+CGG + chr1.3:10888691-10888710 MS.gene059462:intron 50.0%
CTCTCTACCGTTTCTTCCGA+AGG + chr1.3:10888602-10888621 MS.gene059462:CDS 50.0%
GGCACCAAGAATCTTAGGAC+CGG - chr1.3:10888713-10888732 None:intergenic 50.0%
GTAACTTAGGGTAGCCCTGA+GGG - chr1.3:10888971-10888990 None:intergenic 50.0%
TCAGCACCAAACCTTAGTGC+TGG + chr1.3:10889199-10889218 MS.gene059462:CDS 50.0%
TGTAACTTAGGGTAGCCCTG+AGG - chr1.3:10888972-10888991 None:intergenic 50.0%
! CCTAGGGCACCAAGAATCTT+AGG - chr1.3:10888718-10888737 None:intergenic 50.0%
! GAATGCTTTCTCTAGCTCGC+GGG - chr1.3:10889098-10889117 None:intergenic 50.0%
!! CCTAAGATTCTTGGTGCCCT+AGG + chr1.3:10888715-10888734 MS.gene059462:intron 50.0%
AGGGCCGGTCCTAAGATTCT+TGG + chr1.3:10888706-10888725 MS.gene059462:intron 55.0%
! GAAGGGTGTGGATCAGAAGC+AGG + chr1.3:10889364-10889383 MS.gene059462:CDS 55.0%
ACTTAGGGTAGCCCTGAGGG+TGG - chr1.3:10888968-10888987 None:intergenic 60.0%
CTTAGGGTAGCCCTGAGGGT+GGG - chr1.3:10888967-10888986 None:intergenic 60.0%
AGGGTAGCCCTGAGGGTGGG+CGG - chr1.3:10888964-10888983 None:intergenic 70.0%
AGCCCTGAGGGTGGGCGGGA+GGG - chr1.3:10888959-10888978 None:intergenic 75.0%
GGGTAGCCCTGAGGGTGGGC+GGG - chr1.3:10888963-10888982 None:intergenic 75.0%
TAGCCCTGAGGGTGGGCGGG+AGG - chr1.3:10888960-10888979 None:intergenic 75.0%
! CTGAGGGTGGGCGGGAGGGG+CGG - chr1.3:10888955-10888974 None:intergenic 80.0%
! GCCCCTCCCGCCCACCCTCA+GGG + chr1.3:10888954-10888973 MS.gene059462:intron 80.0%
! GCCCTGAGGGTGGGCGGGAG+GGG - chr1.3:10888958-10888977 None:intergenic 80.0%
! CGCCCCTCCCGCCCACCCTC+AGG + chr1.3:10888953-10888972 MS.gene059462:intron 85.0%
! GGCGGGAGGGGCGGCAGCCC+AGG - chr1.3:10888946-10888965 None:intergenic 90.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 10888217 10890534 10888217 ID=MS.gene059462
chr1.3 mRNA 10888217 10890534 10888217 ID=MS.gene059462.t1;Parent=MS.gene059462
chr1.3 exon 10888217 10888623 10888217 ID=MS.gene059462.t1.exon1;Parent=MS.gene059462.t1
chr1.3 CDS 10888217 10888623 10888217 ID=cds.MS.gene059462.t1;Parent=MS.gene059462.t1
chr1.3 exon 10889024 10889561 10889024 ID=MS.gene059462.t1.exon2;Parent=MS.gene059462.t1
chr1.3 CDS 10889024 10889561 10889024 ID=cds.MS.gene059462.t1;Parent=MS.gene059462.t1
chr1.3 exon 10889719 10889977 10889719 ID=MS.gene059462.t1.exon3;Parent=MS.gene059462.t1
chr1.3 CDS 10889719 10889977 10889719 ID=cds.MS.gene059462.t1;Parent=MS.gene059462.t1
chr1.3 exon 10890398 10890534 10890398 ID=MS.gene059462.t1.exon4;Parent=MS.gene059462.t1
chr1.3 CDS 10890398 10890534 10890398 ID=cds.MS.gene059462.t1;Parent=MS.gene059462.t1
Gene Sequence

>MS.gene059462

ATGAAACCTTCAACAGAATCAACCAAGGACACAACCATTAACATTGATAATTCCTCTTCCAAAAGAGTATCTTTCTCTGACCAACAGCAACAGCAACAACACAGTGTTCCTTTGTTACTTCAACCATCTTATGCAAGATCAAAATCCATGATCTTTGATGAACTAAGAAACTTTCGGATATGCCTTAAATGGTGTGCTCTTGATCACTCATCTTGTGTTGGAAAACTCATCTCTTACGTTTCCTTCATCTTCCTCACTTTCATTGTTCCTCTCTTCACAACCCTATTTGTTCAAGTATCTGCTTCTTCTCCTGAAGTTGATCCTATCTCCTTGAACAAGCTTGTTCAAATACCTGAATCTGCACTTGCCATCATTTCCTTCTTCACTCTCTACCGTTTCTTCCGAAGGTACCAAAACAATTTTTCATCATAGTTTTGCATGTATGTGTGTATACTATCATAGTTTTAAATTGAAATTGTGATCACAGCTAGGGCCGGTCCTAAGATTCTTGGTGCCCTAGGCGAAATAATAAAATTGTGCTCTTTTAATTATCCTAATATTTTTCTTCTTGCATTTTTTGTTGCAAAAGATTCATTTATAATCGAAGTTCTCTAAAAAAATATATTTTCAATAGAATTAATCAAAGCGGAATAGGAAAATATATATCTATGTAGTACTAACTACCAAGTAAAAATAACATTTTCAGTGCCCCTAAAAAAATGGTGTCCTGGGCTGCCGCCCCTCCCGCCCACCCTCAGGGCTACCCTAAGTTACAAACATACACTAAACCAATGTGTTATGATGCAGGTATGGCCTAAGGCAACTTCTATTCTTAGATGCATTGCAAGATGACACTACATATGTTCGTCGCGGCTACGCCCGCGAGCTAGAGAAAGCATTCAGATACTTAGCATACATAATCCTACCTTCTTTCTTTGTAGAACTTGCACACAAAATCATATTCTTCTCAGCAGTTAAAATTTCAGCACCAAACCTTAGTGCTGGATTTCCAATACACTCAATTGTGTTTGTATTTATGTTACTTTCATGGCTGTACAGAACTGGAGTGTACTTGTTAGTATGTGTTATTTTCAAATTAACTTGCCAGCTTCAAATATTGAGATTTGAAGGTGTTCACAAGCTTTTTGAAGGGTGTGGATCAGAAGCAGGTGTTATATTTAAGGAACATGTGAGGATTAGAAGGCAATTATGGATTATAAGTCATAGGTATAGATTCTTTATAATCTGTTGTGTGGTTACAATGAGTGTTAGTCAATTGGGTTCTCTATTGCTAGTTTTGGCTTCTAAGTCAGAGAAGACATTCTTCAATTCTGGTGACCTTGTGGTAAGTACATTAATGTATCATATGTTATATTATATATGTGATTTATGCATGTTTGATCACTCAATTAAATGTACTAGTCAATTTCATGATTTGAATGAAGTACTCTCCTTAAATAGAAAGTTTTTCTAATTGTGTGATTGGAAATAATTTTATGCAGATATGTTCAGCAGTGCAATTGAGTGGCTTCTTCTTGTGCATCTTAGGTGCTGCAAAAATCACACATAGAGCTCAAGGAATTGTTTCAATTGCAACAAGATGGCACATGTTGGTGACTAATGCTTCTGCTGAATCAGAGCAATGCAAAGATGATATGTCTGAAGCTCTAGCCAGTGATAGTAGTGATTCTGATTCCTCAGACATACATATATCAATAATCCCACAGAGACTCTCTTCCTTTCAGACTAGACAATCTTTAGGTGAGTTTTGTCTCTAATTTATACAAGAAAAATCGAATAAATAGTCATTTTCGTCTTTGAATGTGTTTTTTCTTAATATATCAAAATGACAAAAACATTTCTAAATGTTTGTTTTCTTAGTGAGTTTAGTCCTCGGATGTGTTTATTTTAGTTAGTTTGATCGTCTAATGTGTTTTTTCTACGCAATCTAATGTGTCTTTCGTTAGTGTTTAGTTCATAAAATTACTAACAAAAGACACATTCAAGATGCTTTTTTGCAATTTCAATACATGCAGTGATTATAGTTACATTGTTTCACATGTTTAGAGACTGAAATGTCAATTTACTTCGAAATTATCTAAATACATAAAATTCGAACGTAATCACATTATCTTTTTCACTATTGGTCATGTGAAGTTTTATTGTGTTTGATTTTTGCAGTGACCTATCTACAACACAACCATGGGGGAATAACATTGTATGGGTTTGCACTTGATCGAGGAATGCTTCATACTCTATTTGCATTTGAATTCTCCATAGTGCTTTGGATTCTGAGTAAGGTGGTTGTCTTAGAATAA

Protein sequence

>MS.gene059462.t1

MKPSTESTKDTTINIDNSSSKRVSFSDQQQQQQHSVPLLLQPSYARSKSMIFDELRNFRICLKWCALDHSSCVGKLISYVSFIFLTFIVPLFTTLFVQVSASSPEVDPISLNKLVQIPESALAIISFFTLYRFFRRYGLRQLLFLDALQDDTTYVRRGYARELEKAFRYLAYIILPSFFVELAHKIIFFSAVKISAPNLSAGFPIHSIVFVFMLLSWLYRTGVYLLVCVIFKLTCQLQILRFEGVHKLFEGCGSEAGVIFKEHVRIRRQLWIISHRYRFFIICCVVTMSVSQLGSLLLVLASKSEKTFFNSGDLVICSAVQLSGFFLCILGAAKITHRAQGIVSIATRWHMLVTNASAESEQCKDDMSEALASDSSDSDSSDIHISIIPQRLSSFQTRQSLVTYLQHNHGGITLYGFALDRGMLHTLFAFEFSIVLWILSKVVVLE