Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95813.t1 | XP_013452348.1 | 96.3 | 295 | 11 | 0 | 1 | 295 | 63 | 357 | 1.50E-154 | 555.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95813.t1 | Q0JL44 | 63.6 | 302 | 102 | 4 | 1 | 295 | 67 | 367 | 2.3e-98 | 360.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95813.t1 | A0A072UAF1 | 96.3 | 295 | 11 | 0 | 1 | 295 | 63 | 357 | 1.1e-154 | 555.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95813 | MS.gene21632 | PPI |
| MS.gene22341 | MS.gene95813 | PPI |
| MS.gene95813 | MS.gene072762 | PPI |
| MS.gene95813 | MS.gene024651 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95813.t1 | MTR_6g053290 | 96.271 | 295 | 11 | 0 | 1 | 295 | 63 | 357 | 0.0 | 588 |
| MS.gene95813.t1 | MTR_6g053290 | 90.735 | 313 | 11 | 1 | 1 | 295 | 63 | 375 | 0.0 | 575 |
| MS.gene95813.t1 | MTR_5g009930 | 62.939 | 313 | 97 | 5 | 1 | 295 | 63 | 374 | 1.19e-125 | 363 |
| MS.gene95813.t1 | MTR_5g009930 | 57.202 | 243 | 85 | 5 | 1 | 225 | 63 | 304 | 1.75e-86 | 261 |
| MS.gene95813.t1 | MTR_6g060735 | 60.000 | 95 | 27 | 2 | 134 | 225 | 59 | 145 | 6.92e-27 | 103 |
| MS.gene95813.t1 | MTR_6g060740 | 66.234 | 77 | 18 | 1 | 149 | 225 | 4 | 72 | 7.52e-26 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95813.t1 | AT4G23570 | 65.986 | 294 | 93 | 4 | 1 | 294 | 63 | 349 | 4.33e-132 | 379 |
| MS.gene95813.t1 | AT4G23570 | 65.986 | 294 | 93 | 4 | 1 | 294 | 63 | 349 | 4.33e-132 | 379 |
| MS.gene95813.t1 | AT4G23570 | 65.986 | 294 | 93 | 4 | 1 | 294 | 64 | 350 | 5.10e-132 | 379 |
| MS.gene95813.t1 | AT4G11260 | 64.646 | 297 | 102 | 2 | 1 | 295 | 63 | 358 | 1.56e-130 | 375 |
Find 68 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCACTTCTTCAGGTTTC+TGG | 0.138730 | 6.2:-43705510 | None:intergenic |
| AGCAAGACGAATTTCAATTT+TGG | 0.199172 | 6.2:-43706112 | None:intergenic |
| TGGTCTCTTTGTTGAATTCT+AGG | 0.213353 | 6.2:-43706161 | None:intergenic |
| AGGACGGGTAAGTGGGTCTT+TGG | 0.240492 | 6.2:-43706576 | None:intergenic |
| ATGGTTACAACCACTTCTTC+AGG | 0.346348 | 6.2:-43705517 | None:intergenic |
| GGCTCCTCTGAAAGATCTTC+TGG | 0.364330 | 6.2:-43705071 | None:intergenic |
| TTTAGAGACGGGTGCCTCAT+TGG | 0.365204 | 6.2:+43704734 | MS.gene95813:CDS |
| TTCTTCAACTCCATGCCATC+TGG | 0.365330 | 6.2:-43707329 | None:intergenic |
| AGCTGTACTAACCTATATTT+AGG | 0.377346 | 6.2:-43705113 | None:intergenic |
| GAATGTGACAAACGCATTGC+AGG | 0.417521 | 6.2:+43704792 | MS.gene95813:CDS |
| CAAGACTTCATACCGGCATC+TGG | 0.421417 | 6.2:-43706085 | None:intergenic |
| CAGCATCTTGATAAATTTCA+CGG | 0.430081 | 6.2:-43706778 | None:intergenic |
| GAAAGCATTACTGTTGACTT+TGG | 0.433046 | 6.2:+43705562 | MS.gene95813:CDS |
| CAAAGGCATATTTGCGCAAA+GGG | 0.436250 | 6.2:+43704123 | MS.gene95813:CDS |
| GAGAAAGATGAAAACCTTGA+TGG | 0.440195 | 6.2:+43706731 | MS.gene95813:CDS |
| GGACGGGTAAGTGGGTCTTT+GGG | 0.445477 | 6.2:-43706575 | None:intergenic |
| GGTCTCTTTGTTGAATTCTA+GGG | 0.445923 | 6.2:-43706160 | None:intergenic |
| ATGGCATGGAGTTGAAGAAA+TGG | 0.454175 | 6.2:+43707333 | MS.gene95813:CDS |
| GAACAGTGCTGTCTACAAAC+TGG | 0.455830 | 6.2:+43707270 | MS.gene95813:CDS |
| GTTGTAACCATATTTGCAAA+GGG | 0.471848 | 6.2:+43705529 | MS.gene95813:CDS |
| GGCTTAGCAACCACCACTAT+CGG | 0.497493 | 6.2:-43705092 | None:intergenic |
| TTACCTGCAGCAATAGCCTT+AGG | 0.503378 | 6.2:-43706192 | None:intergenic |
| CTAAAGCTGAATCTATTCAC+TGG | 0.510738 | 6.2:+43706133 | MS.gene95813:CDS |
| TCAAAATCGCTTGTTTGGAA+AGG | 0.513107 | 6.2:+43705767 | MS.gene95813:CDS |
| AAAACGTATGCATCTTCTCC+AGG | 0.513603 | 6.2:-43705744 | None:intergenic |
| AGAGACCACAATTGCACCTA+AGG | 0.514993 | 6.2:+43706176 | MS.gene95813:CDS |
| GTCTACAAACTGGAAGGAAG+TGG | 0.515802 | 6.2:+43707280 | MS.gene95813:CDS |
| TTACCAGAAACCTGAAGAAG+TGG | 0.519527 | 6.2:+43705507 | MS.gene95813:CDS |
| TGAAGTTGGATCCTGTGTTG+TGG | 0.520693 | 6.2:-43705036 | None:intergenic |
| GCACCTAAGGCTATTGCTGC+AGG | 0.522744 | 6.2:+43706189 | MS.gene95813:CDS |
| TTTGAATCCTTCTCTATCAA+AGG | 0.523621 | 6.2:+43704106 | MS.gene95813:CDS |
| TGGCATGGAGTTGAAGAAAT+GGG | 0.527009 | 6.2:+43707334 | MS.gene95813:CDS |
| TCAGGGCAGCATCGCCATCA+AGG | 0.537014 | 6.2:-43706745 | None:intergenic |
| TCTTTCAGAGGAGCCGATAG+TGG | 0.537695 | 6.2:+43705079 | MS.gene95813:CDS |
| AGTGTCAACATTGATGTCCC+TGG | 0.537929 | 6.2:+43705726 | MS.gene95813:CDS |
| TGAGGCTCAAGTTAAGAAAG+AGG | 0.544908 | 6.2:+43706630 | MS.gene95813:CDS |
| GTGGGAACAAAGAAGGTGGA+AGG | 0.546534 | 6.2:+43707299 | MS.gene95813:CDS |
| GGAAGTGGGAACAAAGAAGG+TGG | 0.550429 | 6.2:+43707295 | MS.gene95813:CDS |
| AAATATGCCTTTGATAGAGA+AGG | 0.551968 | 6.2:-43704113 | None:intergenic |
| GCTAAGACTGCTTTAGAGAC+GGG | 0.554642 | 6.2:+43704723 | MS.gene95813:CDS |
| GAAGGAAGTGGGAACAAAGA+AGG | 0.558246 | 6.2:+43707292 | MS.gene95813:CDS |
| TGCTAAGACTGCTTTAGAGA+CGG | 0.559231 | 6.2:+43704722 | MS.gene95813:CDS |
| AGGAAGTCCTCCAGATGGCA+TGG | 0.561017 | 6.2:+43707319 | MS.gene95813:CDS |
| TGGTTGCTAAGCCTAAATAT+AGG | 0.562078 | 6.2:+43705102 | MS.gene95813:CDS |
| AGATCATACCTTCCAGATGC+CGG | 0.564923 | 6.2:+43706073 | MS.gene95813:intron |
| AATAGCCTTAGGTGCAATTG+TGG | 0.564985 | 6.2:-43706181 | None:intergenic |
| GGTTGTAACCATATTTGCAA+AGG | 0.570551 | 6.2:+43705528 | MS.gene95813:CDS |
| ATCTGATACCGTACCTACAC+AGG | 0.573629 | 6.2:+43705007 | MS.gene95813:CDS |
| TTCAACTCCATGCCATCTGG+AGG | 0.573646 | 6.2:-43707326 | None:intergenic |
| TCAAAGGCATATTTGCGCAA+AGG | 0.585557 | 6.2:+43704122 | MS.gene95813:CDS |
| CAATGCGTGCATGAAGCTTG+AGG | 0.590690 | 6.2:+43704689 | MS.gene95813:CDS |
| TGATTTGTCTGCAGCCAATG+AGG | 0.596085 | 6.2:-43704748 | None:intergenic |
| ACTTCATACCGGCATCTGGA+AGG | 0.598891 | 6.2:-43706081 | None:intergenic |
| TGTAACCATATTTGCAAAGG+GGG | 0.599430 | 6.2:+43705531 | MS.gene95813:CDS |
| TGGTGGACAAGACTTCATAC+CGG | 0.608923 | 6.2:-43706092 | None:intergenic |
| CGGGTAAGTGGGTCTTTGGG+TGG | 0.611093 | 6.2:-43706572 | None:intergenic |
| TGTTTGCAGGTGGAGTCGAA+TGG | 0.611791 | 6.2:+43707248 | MS.gene95813:intron |
| TTCAGAGGAGCCGATAGTGG+TGG | 0.617870 | 6.2:+43705082 | MS.gene95813:CDS |
| TCTACAAACTGGAAGGAAGT+GGG | 0.621778 | 6.2:+43707281 | MS.gene95813:CDS |
| AAACGTATGCATCTTCTCCA+GGG | 0.628412 | 6.2:-43705743 | None:intergenic |
| AATTTATCAAGATGCTGATG+AGG | 0.632409 | 6.2:+43706784 | MS.gene95813:CDS |
| AACAGATTGGGATAAGCTTG+AGG | 0.633465 | 6.2:+43706612 | MS.gene95813:CDS |
| TCAGCCAGAAGATCTTTCAG+AGG | 0.640486 | 6.2:+43705067 | MS.gene95813:CDS |
| AGTGCTGTCTACAAACTGGA+AGG | 0.650530 | 6.2:+43707274 | MS.gene95813:CDS |
| AAGCTGAATCTATTCACTGG+AGG | 0.652918 | 6.2:+43706136 | MS.gene95813:CDS |
| GTGGAAGGAAGTCCTCCAGA+TGG | 0.656890 | 6.2:+43707314 | MS.gene95813:CDS |
| ACAGGAAAAGTCCACAACAC+AGG | 0.661521 | 6.2:+43705025 | MS.gene95813:CDS |
| TTGTAACCATATTTGCAAAG+GGG | 0.699137 | 6.2:+43705530 | MS.gene95813:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACTAATTTAAATTGATTT+CGG | + | chr6.2:43704477-43704496 | MS.gene95813:intron | 10.0% |
| !!! | AACATAATCTAAATATTTTA+AGG | + | chr6.2:43706946-43706965 | MS.gene95813:intron | 10.0% |
| !!! | CTTTTTATTATTTACTTTTT+TGG | + | chr6.2:43704842-43704861 | MS.gene95813:intron | 10.0% |
| !! | GAAAAACAAATTAAGAAATT+TGG | - | chr6.2:43704650-43704669 | None:intergenic | 15.0% |
| !! | TAAATAATGATGAACATTAA+GGG | - | chr6.2:43706498-43706517 | None:intergenic | 15.0% |
| !! | TATACTAAAAATATTGTGTA+TGG | + | chr6.2:43705866-43705885 | MS.gene95813:intron | 15.0% |
| !! | TGTTAATTTAGTATCTAATT+GGG | + | chr6.2:43705386-43705405 | MS.gene95813:intron | 15.0% |
| !! | TTAAGGACTAAAATAAAAAT+GGG | + | chr6.2:43706963-43706982 | MS.gene95813:intron | 15.0% |
| !! | TTGTTAATTTAGTATCTAAT+TGG | + | chr6.2:43705385-43705404 | MS.gene95813:intron | 15.0% |
| !! | TTTAAGGACTAAAATAAAAA+TGG | + | chr6.2:43706962-43706981 | MS.gene95813:intron | 15.0% |
| !!! | ATTTTGAATTTCCAATAAAA+AGG | - | chr6.2:43705977-43705996 | None:intergenic | 15.0% |
| !!! | GTTTTTCCAATTTTTTTTTT+TGG | + | chr6.2:43704663-43704682 | MS.gene95813:intron | 15.0% |
| !! | AAACATCACATGTATTAAAA+AGG | - | chr6.2:43706362-43706381 | None:intergenic | 20.0% |
| !! | AAATAATGATGAACATTAAG+GGG | - | chr6.2:43706497-43706516 | None:intergenic | 20.0% |
| !! | AACAGAAAATCAAAAAGTTT+AGG | - | chr6.2:43705699-43705718 | None:intergenic | 20.0% |
| !! | ATTAAAATTAACCCTTAACA+TGG | + | chr6.2:43706534-43706553 | MS.gene95813:intron | 20.0% |
| !! | GTAAATAATGATGAACATTA+AGG | - | chr6.2:43706499-43706518 | None:intergenic | 20.0% |
| !! | GTTAATTTAGTATCTAATTG+GGG | + | chr6.2:43705387-43705406 | MS.gene95813:intron | 20.0% |
| !! | TTATTCGAAATCTCATTAAA+AGG | + | chr6.2:43705315-43705334 | MS.gene95813:intron | 20.0% |
| !! | TTTCTATTTACACTTTAACT+TGG | + | chr6.2:43705639-43705658 | MS.gene95813:intron | 20.0% |
| !!! | AATAGTACAAAAGTATCATA+CGG | - | chr6.2:43705433-43705452 | None:intergenic | 20.0% |
| !!! | ACAGATAGTTCTTTTAATTT+TGG | + | chr6.2:43705905-43705924 | MS.gene95813:intron | 20.0% |
| !!! | ATTGTTGATTTTTCTAACTT+AGG | + | chr6.2:43704349-43704368 | MS.gene95813:intron | 20.0% |
| !!! | TAAAAAGTGTTTTCAACAAA+AGG | - | chr6.2:43704829-43704848 | None:intergenic | 20.0% |
| ! | AAAACCAAAAAGAACAGATT+GGG | + | chr6.2:43706600-43706619 | MS.gene95813:CDS | 25.0% |
| ! | AATGCTAAAGTAAAACGTAA+GGG | - | chr6.2:43706005-43706024 | None:intergenic | 25.0% |
| ! | ACTTTGTAACAAAACTTTCA+AGG | + | chr6.2:43707051-43707070 | MS.gene95813:intron | 25.0% |
| ! | ATAAAAATGGGTATGGTATA+AGG | + | chr6.2:43706975-43706994 | MS.gene95813:intron | 25.0% |
| ! | ATAGAAAAAATCTGACTTCA+AGG | - | chr6.2:43707114-43707133 | None:intergenic | 25.0% |
| ! | GACTAAAATAAAAATGGGTA+TGG | + | chr6.2:43706968-43706987 | MS.gene95813:intron | 25.0% |
| ! | GACTCAACAAACAAAAATAT+TGG | - | chr6.2:43706894-43706913 | None:intergenic | 25.0% |
| ! | TAGAAAAAATCTGACTTCAA+GGG | - | chr6.2:43707113-43707132 | None:intergenic | 25.0% |
| ! | TATTAGCGTGATTGAAATTA+TGG | + | chr6.2:43706468-43706487 | MS.gene95813:intron | 25.0% |
| ! | TCATATATGTGTAATAAGCT+TGG | + | chr6.2:43705806-43705825 | MS.gene95813:intron | 25.0% |
| ! | TCTGAAAATTAGATGTTACA+AGG | + | chr6.2:43704515-43704534 | MS.gene95813:intron | 25.0% |
| ! | TTGCTGCCAAAAAAAAAAAT+TGG | - | chr6.2:43704672-43704691 | None:intergenic | 25.0% |
| ! | TTTCAATCACGCTAATAATT+TGG | - | chr6.2:43706465-43706484 | None:intergenic | 25.0% |
| !! | AAATGTGGATAATTCACTTT+TGG | + | chr6.2:43704936-43704955 | MS.gene95813:intron | 25.0% |
| !! | AAATTTGGTAACTACATCAT+GGG | - | chr6.2:43704635-43704654 | None:intergenic | 25.0% |
| !! | CGAATAATGATTTGAACTTT+TGG | - | chr6.2:43705302-43705321 | None:intergenic | 25.0% |
| !! | TTCTAAACATTTGTCATTTC+AGG | + | chr6.2:43706709-43706728 | MS.gene95813:intron | 25.0% |
| !!! | AAAAGTATCATACGGAATAA+TGG | - | chr6.2:43705425-43705444 | None:intergenic | 25.0% |
| !!! | ACTTACAAATGACTTTTTCA+TGG | - | chr6.2:43706822-43706841 | None:intergenic | 25.0% |
| !!! | CAGCTTTTTTATTGTTTGTT+TGG | + | chr6.2:43705131-43705150 | MS.gene95813:intron | 25.0% |
| !!! | TTGAAAGTTTTGTTACAAAG+TGG | - | chr6.2:43707052-43707071 | None:intergenic | 25.0% |
| !!! | TTTAACTTGGTTTAACAAGT+TGG | + | chr6.2:43705652-43705671 | MS.gene95813:intron | 25.0% |
| AAATATGCCTTTGATAGAGA+AGG | - | chr6.2:43704116-43704135 | None:intergenic | 30.0% | |
| AACTGCAAAATCCATGTTAA+GGG | - | chr6.2:43706548-43706567 | None:intergenic | 30.0% | |
| AATTTATCAAGATGCTGATG+AGG | + | chr6.2:43706784-43706803 | MS.gene95813:CDS | 30.0% | |
| ACTTTGGTGAACAAATTGTA+TGG | + | chr6.2:43705578-43705597 | MS.gene95813:intron | 30.0% | |
| AGAATATGTAGGAAGAAGAA+AGG | - | chr6.2:43704174-43704193 | None:intergenic | 30.0% | |
| AGACGAATAATAAGATGACA+TGG | - | chr6.2:43707223-43707242 | None:intergenic | 30.0% | |
| AGATGTTACAAGGTTATTTG+CGG | + | chr6.2:43704525-43704544 | MS.gene95813:intron | 30.0% | |
| AGCTGTACTAACCTATATTT+AGG | - | chr6.2:43705116-43705135 | None:intergenic | 30.0% | |
| CAAAACCAAAAAGAACAGAT+TGG | + | chr6.2:43706599-43706618 | MS.gene95813:CDS | 30.0% | |
| CAATGCTAAAGTAAAACGTA+AGG | - | chr6.2:43706006-43706025 | None:intergenic | 30.0% | |
| CACTTTCTTATATTTGATCC+TGG | + | chr6.2:43706854-43706873 | MS.gene95813:intron | 30.0% | |
| CAGCATCTTGATAAATTTCA+CGG | - | chr6.2:43706781-43706800 | None:intergenic | 30.0% | |
| CCAATAAAAAGGATTGAAAC+AGG | - | chr6.2:43705966-43705985 | None:intergenic | 30.0% | |
| CTATCAATGTGTAAACTACA+GGG | + | chr6.2:43706915-43706934 | MS.gene95813:intron | 30.0% | |
| CTGTATAATATGTTAACCTG+TGG | + | chr6.2:43706036-43706055 | MS.gene95813:intron | 30.0% | |
| GAATAGTTAGTACATGACAT+TGG | - | chr6.2:43705280-43705299 | None:intergenic | 30.0% | |
| GAATATGTAGGAAGAAGAAA+GGG | - | chr6.2:43704173-43704192 | None:intergenic | 30.0% | |
| GCAACAATTACAGAATATGT+AGG | - | chr6.2:43704185-43704204 | None:intergenic | 30.0% | |
| GTTGTAACCATATTTGCAAA+GGG | + | chr6.2:43705529-43705548 | MS.gene95813:CDS | 30.0% | |
| TAACTGCAAAATCCATGTTA+AGG | - | chr6.2:43706549-43706568 | None:intergenic | 30.0% | |
| TATAAGCGTAAAAATGCTGA+GGG | - | chr6.2:43705361-43705380 | None:intergenic | 30.0% | |
| TATAAGCTTTCGATAACACA+TGG | - | chr6.2:43704257-43704276 | None:intergenic | 30.0% | |
| TATATTTGATCCTGGCTATA+TGG | + | chr6.2:43706862-43706881 | MS.gene95813:intron | 30.0% | |
| TATCTAATTGGGGAAAAGTT+TGG | + | chr6.2:43705397-43705416 | MS.gene95813:intron | 30.0% | |
| TCTATCAATGTGTAAACTAC+AGG | + | chr6.2:43706914-43706933 | MS.gene95813:intron | 30.0% | |
| TGCATTGTATGTGCTATATT+TGG | - | chr6.2:43706290-43706309 | None:intergenic | 30.0% | |
| TTGTAACCATATTTGCAAAG+GGG | + | chr6.2:43705530-43705549 | MS.gene95813:CDS | 30.0% | |
| TTTGAATCCTTCTCTATCAA+AGG | + | chr6.2:43704106-43704125 | MS.gene95813:CDS | 30.0% | |
| ! | AAGACGAATTTCAATTTTGG+TGG | - | chr6.2:43706112-43706131 | None:intergenic | 30.0% |
| ! | AGCAAGACGAATTTCAATTT+TGG | - | chr6.2:43706115-43706134 | None:intergenic | 30.0% |
| ! | ATGTTAGTCATTGGCTAAAT+TGG | + | chr6.2:43707162-43707181 | MS.gene95813:intron | 30.0% |
| ! | ATTCGTCTTATTATGTTTGC+AGG | + | chr6.2:43707235-43707254 | MS.gene95813:intron | 30.0% |
| ! | CCTGTTTCAATCCTTTTTAT+TGG | + | chr6.2:43705963-43705982 | MS.gene95813:intron | 30.0% |
| ! | GAAATTTGGTAACTACATCA+TGG | - | chr6.2:43704636-43704655 | None:intergenic | 30.0% |
| ! | GAACTCTTTTCAAAGCATAA+GGG | + | chr6.2:43705199-43705218 | MS.gene95813:intron | 30.0% |
| ! | TGAACTCTTTTCAAAGCATA+AGG | + | chr6.2:43705198-43705217 | MS.gene95813:intron | 30.0% |
| ! | TTATCCCAATCTGTTCTTTT+TGG | - | chr6.2:43706607-43706626 | None:intergenic | 30.0% |
| ! | TTCACGGAAAAATTTGTTCA+GGG | - | chr6.2:43706765-43706784 | None:intergenic | 30.0% |
| ! | TTTCACGGAAAAATTTGTTC+AGG | - | chr6.2:43706766-43706785 | None:intergenic | 30.0% |
| !! | GTTTTTCAAAATCGCTTGTT+TGG | + | chr6.2:43705762-43705781 | MS.gene95813:CDS | 30.0% |
| !!! | AAGAACTGAAACTTTTTTGC+AGG | - | chr6.2:43706667-43706686 | None:intergenic | 30.0% |
| !!! | ATCTGTTCTTTTTGGTTTTG+AGG | - | chr6.2:43706599-43706618 | None:intergenic | 30.0% |
| !!! | ATTTTTTTCCACAGATCAGT+AGG | - | chr6.2:43705473-43705492 | None:intergenic | 30.0% |
| !!! | GTGATGGTTTTTTGGATTAT+TGG | + | chr6.2:43706438-43706457 | MS.gene95813:intron | 30.0% |
| !!! | TCAATTTTTAGCATACGTGA+TGG | + | chr6.2:43706312-43706331 | MS.gene95813:intron | 30.0% |
| ACAAAATTCCTACTGATCTG+TGG | + | chr6.2:43705462-43705481 | MS.gene95813:intron | 35.0% | |
| ACTTTCAAGGACCAAAACTT+TGG | + | chr6.2:43707064-43707083 | MS.gene95813:intron | 35.0% | |
| AGATAAAACTCCAAACCACT+TGG | + | chr6.2:43705233-43705252 | MS.gene95813:intron | 35.0% | |
| AGCCAATGACTAACATTTGT+CGG | - | chr6.2:43707158-43707177 | None:intergenic | 35.0% | |
| AGTGTAGTTTACAACTGGAT+AGG | + | chr6.2:43705841-43705860 | MS.gene95813:intron | 35.0% | |
| ATTGTATCTGACCGTTGAAA+GGG | + | chr6.2:43704912-43704931 | MS.gene95813:intron | 35.0% | |
| CATGGCAATAACAACATTTC+AGG | - | chr6.2:43704239-43704258 | None:intergenic | 35.0% | |
| CTAAAGCTGAATCTATTCAC+TGG | + | chr6.2:43706133-43706152 | MS.gene95813:CDS | 35.0% | |
| CTGTTTGAAGATATAACCAC+AGG | - | chr6.2:43706055-43706074 | None:intergenic | 35.0% | |
| GAGAAAGATGAAAACCTTGA+TGG | + | chr6.2:43706731-43706750 | MS.gene95813:CDS | 35.0% | |
| GATCTGTGGAAAAAAATTGC+AGG | + | chr6.2:43705476-43705495 | MS.gene95813:intron | 35.0% | |
| GGTCTCTTTGTTGAATTCTA+GGG | - | chr6.2:43706163-43706182 | None:intergenic | 35.0% | |
| GGTTGTAACCATATTTGCAA+AGG | + | chr6.2:43705528-43705547 | MS.gene95813:CDS | 35.0% | |
| GTATAAGCGTAAAAATGCTG+AGG | - | chr6.2:43705362-43705381 | None:intergenic | 35.0% | |
| TAACTACATCATGGGAAAAC+AGG | - | chr6.2:43704627-43704646 | None:intergenic | 35.0% | |
| TAATGATGAACATTAAGGGG+TGG | - | chr6.2:43706494-43706513 | None:intergenic | 35.0% | |
| TCAAAATCGCTTGTTTGGAA+AGG | + | chr6.2:43705767-43705786 | MS.gene95813:CDS | 35.0% | |
| TGGTCTCTTTGTTGAATTCT+AGG | - | chr6.2:43706164-43706183 | None:intergenic | 35.0% | |
| TGGTTGCTAAGCCTAAATAT+AGG | + | chr6.2:43705102-43705121 | MS.gene95813:CDS | 35.0% | |
| TGTAACCATATTTGCAAAGG+GGG | + | chr6.2:43705531-43705550 | MS.gene95813:CDS | 35.0% | |
| TGTAATAAGCTTGGATCACA+TGG | + | chr6.2:43705815-43705834 | MS.gene95813:intron | 35.0% | |
| TTCAAAGCATAAGGGTAAAG+TGG | + | chr6.2:43705207-43705226 | MS.gene95813:intron | 35.0% | |
| TTCCGACAAATGTTAGTCAT+TGG | + | chr6.2:43707153-43707172 | MS.gene95813:intron | 35.0% | |
| TTTATTGTTTGTTTGGACCG+TGG | + | chr6.2:43705138-43705157 | MS.gene95813:intron | 35.0% | |
| ! | ATCCACATTTTCCCTTTCAA+CGG | - | chr6.2:43704926-43704945 | None:intergenic | 35.0% |
| ! | GGAAAAGTGTAGTTTACAAC+TGG | + | chr6.2:43705836-43705855 | MS.gene95813:intron | 35.0% |
| ! | TGTTTGGAAAGGTATGGAAT+GGG | + | chr6.2:43705778-43705797 | MS.gene95813:intron | 35.0% |
| ! | TTCCACTCAAACCAAAGTTT+TGG | - | chr6.2:43707078-43707097 | None:intergenic | 35.0% |
| ! | TTGTTTGGAAAGGTATGGAA+TGG | + | chr6.2:43705777-43705796 | MS.gene95813:intron | 35.0% |
| !! | AACTTTGGTTTGAGTGGAAT+TGG | + | chr6.2:43707079-43707098 | MS.gene95813:intron | 35.0% |
| !! | ACAGAAGTTTGCTAGTATTG+TGG | - | chr6.2:43706399-43706418 | None:intergenic | 35.0% |
| !! | GAAAGCATTACTGTTGACTT+TGG | + | chr6.2:43705562-43705581 | MS.gene95813:CDS | 35.0% |
| !! | GGTATCTGTGATTTTAACGA+AGG | - | chr6.2:43706269-43706288 | None:intergenic | 35.0% |
| !! | TGGATAATTCACTTTTGGCT+AGG | + | chr6.2:43704941-43704960 | MS.gene95813:intron | 35.0% |
| !! | TTCACTGCAGCTTTATGTTT+TGG | + | chr6.2:43706223-43706242 | MS.gene95813:intron | 35.0% |
| !!! | GTTCTTTTTGGTTTTGAGGA+CGG | - | chr6.2:43706595-43706614 | None:intergenic | 35.0% |
| !!! | TTCTTTTTGGTTTTGAGGAC+GGG | - | chr6.2:43706594-43706613 | None:intergenic | 35.0% |
| AAAACGTATGCATCTTCTCC+AGG | - | chr6.2:43705747-43705766 | None:intergenic | 40.0% | |
| AAACGTATGCATCTTCTCCA+GGG | - | chr6.2:43705746-43705765 | None:intergenic | 40.0% | |
| AACAGATTGGGATAAGCTTG+AGG | + | chr6.2:43706612-43706631 | MS.gene95813:CDS | 40.0% | |
| AAGCTGAATCTATTCACTGG+AGG | + | chr6.2:43706136-43706155 | MS.gene95813:CDS | 40.0% | |
| ACATCATTGACCAAGTGGTT+TGG | - | chr6.2:43705246-43705265 | None:intergenic | 40.0% | |
| ATCGCTTGTTTGGAAAGGTA+TGG | + | chr6.2:43705772-43705791 | MS.gene95813:intron | 40.0% | |
| ATGGCATGGAGTTGAAGAAA+TGG | + | chr6.2:43707333-43707352 | MS.gene95813:CDS | 40.0% | |
| ATGGTTACAACCACTTCTTC+AGG | - | chr6.2:43705520-43705539 | None:intergenic | 40.0% | |
| ATGTTCCAGAATGTGTTCTG+TGG | + | chr6.2:43704276-43704295 | MS.gene95813:intron | 40.0% | |
| CATTTGTCGGAAAACTTGAC+TGG | - | chr6.2:43707145-43707164 | None:intergenic | 40.0% | |
| CTAGGAAACTAACTTGAGCT+TGG | + | chr6.2:43704959-43704978 | MS.gene95813:intron | 40.0% | |
| GAAGAAGAAAGGGAAAGACA+AGG | - | chr6.2:43704163-43704182 | None:intergenic | 40.0% | |
| GATTGTATCTGACCGTTGAA+AGG | + | chr6.2:43704911-43704930 | MS.gene95813:intron | 40.0% | |
| TAGCATCAATGTCCCAGTTA+CGG | + | chr6.2:43707193-43707212 | MS.gene95813:intron | 40.0% | |
| TCTACAAACTGGAAGGAAGT+GGG | + | chr6.2:43707281-43707300 | MS.gene95813:CDS | 40.0% | |
| TGAGGCTCAAGTTAAGAAAG+AGG | + | chr6.2:43706630-43706649 | MS.gene95813:CDS | 40.0% | |
| TGGCATGGAGTTGAAGAAAT+GGG | + | chr6.2:43707334-43707353 | MS.gene95813:CDS | 40.0% | |
| TGTTCCAGAATGTGTTCTGT+GGG | + | chr6.2:43704277-43704296 | MS.gene95813:intron | 40.0% | |
| TTACCAGAAACCTGAAGAAG+TGG | + | chr6.2:43705507-43705526 | MS.gene95813:CDS | 40.0% | |
| TTGGATCATACCATATAGCC+AGG | - | chr6.2:43706875-43706894 | None:intergenic | 40.0% | |
| ! | AATAGCCTTAGGTGCAATTG+TGG | - | chr6.2:43706184-43706203 | None:intergenic | 40.0% |
| ! | ATGACATGGTTTTCCGTAAC+TGG | - | chr6.2:43707209-43707228 | None:intergenic | 40.0% |
| ! | CAAAGGCATATTTGCGCAAA+GGG | + | chr6.2:43704123-43704142 | MS.gene95813:CDS | 40.0% |
| ! | CGTCTTATTATGTTTGCAGG+TGG | + | chr6.2:43707238-43707257 | MS.gene95813:intron | 40.0% |
| ! | TCAAAGGCATATTTGCGCAA+AGG | + | chr6.2:43704122-43704141 | MS.gene95813:CDS | 40.0% |
| ! | TGACATGGTTTTCCGTAACT+GGG | - | chr6.2:43707208-43707227 | None:intergenic | 40.0% |
| !! | CAAAGTTTTGTCACGAGTGA+TGG | + | chr6.2:43706422-43706441 | MS.gene95813:intron | 40.0% |
| !! | GACCAAAACTTTGGTTTGAG+TGG | + | chr6.2:43707073-43707092 | MS.gene95813:intron | 40.0% |
| !! | TCAGTAAATGCGTTCTGAGA+TGG | + | chr6.2:43704434-43704453 | MS.gene95813:intron | 40.0% |
| !! | TGCTAAGACTGCTTTAGAGA+CGG | + | chr6.2:43704722-43704741 | MS.gene95813:CDS | 40.0% |
| !!! | GGCTGAACATCTTTTGAAGT+TGG | - | chr6.2:43705053-43705072 | None:intergenic | 40.0% |
| !!! | TGTCACGAGTGATGGTTTTT+TGG | + | chr6.2:43706430-43706449 | MS.gene95813:intron | 40.0% |
| ACAGGAAAAGTCCACAACAC+AGG | + | chr6.2:43705025-43705044 | MS.gene95813:CDS | 45.0% | |
| AGAGACCACAATTGCACCTA+AGG | + | chr6.2:43706176-43706195 | MS.gene95813:CDS | 45.0% | |
| AGATCATACCTTCCAGATGC+CGG | + | chr6.2:43706073-43706092 | MS.gene95813:intron | 45.0% | |
| AGTGCTGTCTACAAACTGGA+AGG | + | chr6.2:43707274-43707293 | MS.gene95813:CDS | 45.0% | |
| AGTGTCAACATTGATGTCCC+TGG | + | chr6.2:43705726-43705745 | MS.gene95813:CDS | 45.0% | |
| ATCTGATACCGTACCTACAC+AGG | + | chr6.2:43705007-43705026 | MS.gene95813:CDS | 45.0% | |
| ATTGTTTGTTTGGACCGTGG+AGG | + | chr6.2:43705141-43705160 | MS.gene95813:intron | 45.0% | |
| ATTTGCAAAGGGGGTCTCAA+AGG | + | chr6.2:43705540-43705559 | MS.gene95813:CDS | 45.0% | |
| CGTCAACATCATTGACCAAG+TGG | - | chr6.2:43705251-43705270 | None:intergenic | 45.0% | |
| CTAAACATTAGCACCCTCCA+CGG | - | chr6.2:43705158-43705177 | None:intergenic | 45.0% | |
| GAACAGTGCTGTCTACAAAC+TGG | + | chr6.2:43707270-43707289 | MS.gene95813:CDS | 45.0% | |
| GAAGAAAGGGAAAGACAAGG+TGG | - | chr6.2:43704160-43704179 | None:intergenic | 45.0% | |
| GAAGGAAGTGGGAACAAAGA+AGG | + | chr6.2:43707292-43707311 | MS.gene95813:CDS | 45.0% | |
| GAATGTGACAAACGCATTGC+AGG | + | chr6.2:43704792-43704811 | MS.gene95813:CDS | 45.0% | |
| GACCGTTGAAAGGGAAAATG+TGG | + | chr6.2:43704921-43704940 | MS.gene95813:intron | 45.0% | |
| GGAAACTAACTTGAGCTTGG+TGG | + | chr6.2:43704962-43704981 | MS.gene95813:intron | 45.0% | |
| GGTTTGAGTGGAATTGGACT+CGG | + | chr6.2:43707085-43707104 | MS.gene95813:intron | 45.0% | |
| GTAACTGGGACATTGATGCT+AGG | - | chr6.2:43707194-43707213 | None:intergenic | 45.0% | |
| GTCTACAAACTGGAAGGAAG+TGG | + | chr6.2:43707280-43707299 | MS.gene95813:CDS | 45.0% | |
| GTTCCAGAATGTGTTCTGTG+GGG | + | chr6.2:43704278-43704297 | MS.gene95813:intron | 45.0% | |
| TCAGCCAGAAGATCTTTCAG+AGG | + | chr6.2:43705067-43705086 | MS.gene95813:CDS | 45.0% | |
| TGAAGTTGGATCCTGTGTTG+TGG | - | chr6.2:43705039-43705058 | None:intergenic | 45.0% | |
| TGAGACCCCCTTTGCAAATA+TGG | - | chr6.2:43705539-43705558 | None:intergenic | 45.0% | |
| TTACCTGCAGCAATAGCCTT+AGG | - | chr6.2:43706195-43706214 | None:intergenic | 45.0% | |
| TTCTTCAACTCCATGCCATC+TGG | - | chr6.2:43707332-43707351 | None:intergenic | 45.0% | |
| TTGTTTGTTTGGACCGTGGA+GGG | + | chr6.2:43705142-43705161 | MS.gene95813:intron | 45.0% | |
| ! | CAACCACTTCTTCAGGTTTC+TGG | - | chr6.2:43705513-43705532 | None:intergenic | 45.0% |
| ! | GGACTTTTCCTGTGTAGGTA+CGG | - | chr6.2:43705018-43705037 | None:intergenic | 45.0% |
| ! | GTTGTGGACTTTTCCTGTGT+AGG | - | chr6.2:43705023-43705042 | None:intergenic | 45.0% |
| ! | TGATTTGTCTGCAGCCAATG+AGG | - | chr6.2:43704751-43704770 | None:intergenic | 45.0% |
| ! | TGGTGGACAAGACTTCATAC+CGG | - | chr6.2:43706095-43706114 | None:intergenic | 45.0% |
| !! | GCTAAGACTGCTTTAGAGAC+GGG | + | chr6.2:43704723-43704742 | MS.gene95813:CDS | 45.0% |
| ACTTCATACCGGCATCTGGA+AGG | - | chr6.2:43706084-43706103 | None:intergenic | 50.0% | |
| CAAGACTTCATACCGGCATC+TGG | - | chr6.2:43706088-43706107 | None:intergenic | 50.0% | |
| CAATGCGTGCATGAAGCTTG+AGG | + | chr6.2:43704689-43704708 | MS.gene95813:CDS | 50.0% | |
| GGAAGTGGGAACAAAGAAGG+TGG | + | chr6.2:43707295-43707314 | MS.gene95813:CDS | 50.0% | |
| GGCTTAGCAACCACCACTAT+CGG | - | chr6.2:43705095-43705114 | None:intergenic | 50.0% | |
| GTGGGAACAAAGAAGGTGGA+AGG | + | chr6.2:43707299-43707318 | MS.gene95813:CDS | 50.0% | |
| TCTTTCAGAGGAGCCGATAG+TGG | + | chr6.2:43705079-43705098 | MS.gene95813:CDS | 50.0% | |
| TGTTTGCAGGTGGAGTCGAA+TGG | + | chr6.2:43707248-43707267 | MS.gene95813:intron | 50.0% | |
| TTCAACTCCATGCCATCTGG+AGG | - | chr6.2:43707329-43707348 | None:intergenic | 50.0% | |
| TTTAGAGACGGGTGCCTCAT+TGG | + | chr6.2:43704734-43704753 | MS.gene95813:CDS | 50.0% | |
| ! | GGCTCCTCTGAAAGATCTTC+TGG | - | chr6.2:43705074-43705093 | None:intergenic | 50.0% |
| !! | CGTGGAGGGTGCTAATGTTT+AGG | + | chr6.2:43705156-43705175 | MS.gene95813:intron | 50.0% |
| !!! | GGTTTTGAGGACGGGTAAGT+GGG | - | chr6.2:43706586-43706605 | None:intergenic | 50.0% |
| !!! | TGGTTTTGAGGACGGGTAAG+TGG | - | chr6.2:43706587-43706606 | None:intergenic | 50.0% |
| AGGAAGTCCTCCAGATGGCA+TGG | + | chr6.2:43707319-43707338 | MS.gene95813:CDS | 55.0% | |
| AGGACGGGTAAGTGGGTCTT+TGG | - | chr6.2:43706579-43706598 | None:intergenic | 55.0% | |
| CAGAATGTGTTCTGTGGGGC+TGG | + | chr6.2:43704282-43704301 | MS.gene95813:intron | 55.0% | |
| CAGCCCCACAGAACACATTC+TGG | - | chr6.2:43704284-43704303 | None:intergenic | 55.0% | |
| GCACCTAAGGCTATTGCTGC+AGG | + | chr6.2:43706189-43706208 | MS.gene95813:CDS | 55.0% | |
| GGACGGGTAAGTGGGTCTTT+GGG | - | chr6.2:43706578-43706597 | None:intergenic | 55.0% | |
| GTGGAAGGAAGTCCTCCAGA+TGG | + | chr6.2:43707314-43707333 | MS.gene95813:CDS | 55.0% | |
| ! | TTCAGAGGAGCCGATAGTGG+TGG | + | chr6.2:43705082-43705101 | MS.gene95813:CDS | 55.0% |
| CGGGTAAGTGGGTCTTTGGG+TGG | - | chr6.2:43706575-43706594 | None:intergenic | 60.0% | |
| TCAGGGCAGCATCGCCATCA+AGG | - | chr6.2:43706748-43706767 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 43704101 | 43707364 | 43704101 | ID=MS.gene95813 |
| chr6.2 | mRNA | 43704101 | 43707364 | 43704101 | ID=MS.gene95813.t1;Parent=MS.gene95813 |
| chr6.2 | exon | 43704101 | 43704144 | 43704101 | ID=MS.gene95813.t1.exon1;Parent=MS.gene95813.t1 |
| chr6.2 | CDS | 43704101 | 43704144 | 43704101 | ID=cds.MS.gene95813.t1;Parent=MS.gene95813.t1 |
| chr6.2 | exon | 43704689 | 43704813 | 43704689 | ID=MS.gene95813.t1.exon2;Parent=MS.gene95813.t1 |
| chr6.2 | CDS | 43704689 | 43704813 | 43704689 | ID=cds.MS.gene95813.t1;Parent=MS.gene95813.t1 |
| chr6.2 | exon | 43705003 | 43705123 | 43705003 | ID=MS.gene95813.t1.exon3;Parent=MS.gene95813.t1 |
| chr6.2 | CDS | 43705003 | 43705123 | 43705003 | ID=cds.MS.gene95813.t1;Parent=MS.gene95813.t1 |
| chr6.2 | exon | 43705498 | 43705594 | 43705498 | ID=MS.gene95813.t1.exon4;Parent=MS.gene95813.t1 |
| chr6.2 | CDS | 43705498 | 43705594 | 43705498 | ID=cds.MS.gene95813.t1;Parent=MS.gene95813.t1 |
| chr6.2 | exon | 43705723 | 43705788 | 43705723 | ID=MS.gene95813.t1.exon5;Parent=MS.gene95813.t1 |
| chr6.2 | CDS | 43705723 | 43705788 | 43705723 | ID=cds.MS.gene95813.t1;Parent=MS.gene95813.t1 |
| chr6.2 | exon | 43706075 | 43706210 | 43706075 | ID=MS.gene95813.t1.exon6;Parent=MS.gene95813.t1 |
| chr6.2 | CDS | 43706075 | 43706210 | 43706075 | ID=cds.MS.gene95813.t1;Parent=MS.gene95813.t1 |
| chr6.2 | exon | 43706566 | 43706651 | 43706566 | ID=MS.gene95813.t1.exon7;Parent=MS.gene95813.t1 |
| chr6.2 | CDS | 43706566 | 43706651 | 43706566 | ID=cds.MS.gene95813.t1;Parent=MS.gene95813.t1 |
| chr6.2 | exon | 43706731 | 43706835 | 43706731 | ID=MS.gene95813.t1.exon8;Parent=MS.gene95813.t1 |
| chr6.2 | CDS | 43706731 | 43706835 | 43706731 | ID=cds.MS.gene95813.t1;Parent=MS.gene95813.t1 |
| chr6.2 | exon | 43707257 | 43707364 | 43707257 | ID=MS.gene95813.t1.exon9;Parent=MS.gene95813.t1 |
| chr6.2 | CDS | 43707257 | 43707364 | 43707257 | ID=cds.MS.gene95813.t1;Parent=MS.gene95813.t1 |
| Gene Sequence |
| Protein sequence |
