Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072762.t1 | XP_003611052.1 | 96 | 374 | 8 | 1 | 1 | 367 | 1 | 374 | 1.50E-196 | 695.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072762.t1 | Q0JL44 | 64.1 | 368 | 124 | 3 | 2 | 367 | 6 | 367 | 5.0e-127 | 455.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072762.t1 | G7KBZ4 | 96.0 | 374 | 8 | 1 | 1 | 367 | 1 | 374 | 1.1e-196 | 695.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene072762 | 0.842884 | 1.97E-58 | -1.69E-46 |
| MS.gene049166 | MS.gene072762 | 0.80633 | 8.67E-50 | -1.69E-46 |
| MS.gene04918 | MS.gene072762 | 0.832804 | 7.67E-56 | -1.69E-46 |
| MS.gene04919 | MS.gene072762 | 0.828348 | 9.45E-55 | -1.69E-46 |
| MS.gene04920 | MS.gene072762 | 0.841358 | 4.99E-58 | -1.69E-46 |
| MS.gene049283 | MS.gene072762 | 0.864877 | 8.86E-65 | -1.69E-46 |
| MS.gene049368 | MS.gene072762 | 0.848091 | 7.64E-60 | -1.69E-46 |
| MS.gene049499 | MS.gene072762 | 0.822142 | 2.78E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene072762 | 0.877533 | 5.82E-69 | -1.69E-46 |
| MS.gene04998 | MS.gene072762 | 0.816161 | 6.38E-52 | -1.69E-46 |
| MS.gene050084 | MS.gene072762 | 0.803125 | 4.05E-49 | -1.69E-46 |
| MS.gene050085 | MS.gene072762 | 0.822359 | 2.47E-53 | -1.69E-46 |
| MS.gene050213 | MS.gene072762 | 0.854804 | 9.65E-62 | -1.69E-46 |
| MS.gene050359 | MS.gene072762 | 0.814358 | 1.61E-51 | -1.69E-46 |
| MS.gene050386 | MS.gene072762 | 0.804565 | 2.03E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene072762 | 0.817973 | 2.50E-52 | -1.69E-46 |
| MS.gene050551 | MS.gene072762 | 0.850159 | 2.03E-60 | -1.69E-46 |
| MS.gene050556 | MS.gene072762 | 0.802699 | 4.96E-49 | -1.69E-46 |
| MS.gene050571 | MS.gene072762 | 0.811138 | 8.13E-51 | -1.69E-46 |
| MS.gene050646 | MS.gene072762 | 0.85537 | 6.60E-62 | -1.69E-46 |
| MS.gene050654 | MS.gene072762 | 0.873149 | 1.84E-67 | -1.69E-46 |
| MS.gene050689 | MS.gene072762 | 0.816767 | 4.67E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene072762 | 0.834198 | 3.44E-56 | -1.69E-46 |
| MS.gene050931 | MS.gene072762 | 0.839859 | 1.23E-57 | -1.69E-46 |
| MS.gene050941 | MS.gene072762 | 0.813894 | 2.03E-51 | -1.69E-46 |
| MS.gene050945 | MS.gene072762 | 0.81717 | 3.79E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene072762 | 0.856099 | 4.04E-62 | -1.69E-46 |
| MS.gene051198 | MS.gene072762 | 0.800911 | 1.15E-48 | -1.69E-46 |
| MS.gene051233 | MS.gene072762 | 0.811984 | 5.33E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene072762 | 0.845165 | 4.81E-59 | -1.69E-46 |
| MS.gene051343 | MS.gene072762 | 0.84221 | 2.97E-58 | -1.69E-46 |
| MS.gene051381 | MS.gene072762 | 0.81906 | 1.42E-52 | -1.69E-46 |
| MS.gene051676 | MS.gene072762 | 0.833663 | 4.69E-56 | -1.69E-46 |
| MS.gene051852 | MS.gene072762 | 0.806204 | 9.21E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene072762 | 0.812613 | 3.88E-51 | -1.69E-46 |
| MS.gene051902 | MS.gene072762 | 0.82002 | 8.55E-53 | -1.69E-46 |
| MS.gene051975 | MS.gene072762 | 0.845701 | 3.45E-59 | -1.69E-46 |
| MS.gene052016 | MS.gene072762 | 0.834525 | 2.85E-56 | -1.69E-46 |
| MS.gene052052 | MS.gene072762 | 0.813031 | 3.14E-51 | -1.69E-46 |
| MS.gene052072 | MS.gene072762 | 0.828307 | 9.67E-55 | -1.69E-46 |
| MS.gene052118 | MS.gene072762 | 0.829711 | 4.42E-55 | -1.69E-46 |
| MS.gene052307 | MS.gene072762 | 0.851856 | 6.76E-61 | -1.69E-46 |
| MS.gene052342 | MS.gene072762 | 0.844458 | 7.47E-59 | -1.69E-46 |
| MS.gene052434 | MS.gene072762 | 0.845613 | 3.64E-59 | -1.69E-46 |
| MS.gene052463 | MS.gene072762 | 0.850793 | 1.35E-60 | -1.69E-46 |
| MS.gene052518 | MS.gene072762 | 0.817784 | 2.76E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene072762 | 0.85197 | 6.27E-61 | -1.69E-46 |
| MS.gene052776 | MS.gene072762 | 0.807583 | 4.71E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene072762 | 0.818483 | 1.91E-52 | -1.69E-46 |
| MS.gene053079 | MS.gene072762 | 0.872452 | 3.15E-67 | -1.69E-46 |
| MS.gene053143 | MS.gene072762 | 0.821145 | 4.72E-53 | -1.69E-46 |
| MS.gene05315 | MS.gene072762 | 0.801671 | 8.07E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene072762 | 0.812269 | 4.62E-51 | -1.69E-46 |
| MS.gene053456 | MS.gene072762 | 0.814444 | 1.54E-51 | -1.69E-46 |
| MS.gene053564 | MS.gene072762 | 0.814937 | 1.19E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene072762 | 0.809702 | 1.66E-50 | -1.69E-46 |
| MS.gene053786 | MS.gene072762 | 0.832107 | 1.14E-55 | -1.69E-46 |
| MS.gene053895 | MS.gene072762 | -0.821435 | 4.04E-53 | -1.69E-46 |
| MS.gene053931 | MS.gene072762 | 0.804224 | 2.39E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene072762 | 0.829398 | 5.26E-55 | -1.69E-46 |
| MS.gene05458 | MS.gene072762 | 0.859636 | 3.61E-63 | -1.69E-46 |
| MS.gene054641 | MS.gene072762 | 0.801365 | 9.32E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene072762 | 0.802925 | 4.45E-49 | -1.69E-46 |
| MS.gene054772 | MS.gene072762 | 0.80251 | 5.42E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene072762 | 0.832836 | 7.53E-56 | -1.69E-46 |
| MS.gene054893 | MS.gene072762 | 0.837914 | 3.92E-57 | -1.69E-46 |
| MS.gene054957 | MS.gene072762 | 0.812705 | 3.71E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene072762 | 0.806337 | 8.64E-50 | -1.69E-46 |
| MS.gene055222 | MS.gene072762 | 0.811359 | 7.28E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene072762 | 0.818087 | 2.35E-52 | -1.69E-46 |
| MS.gene055313 | MS.gene072762 | 0.819501 | 1.12E-52 | -1.69E-46 |
| MS.gene055314 | MS.gene072762 | 0.809168 | 2.16E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene072762 | 0.801009 | 1.10E-48 | -1.69E-46 |
| MS.gene055513 | MS.gene072762 | 0.886809 | 2.48E-72 | -1.69E-46 |
| MS.gene055864 | MS.gene072762 | 0.825561 | 4.38E-54 | -1.69E-46 |
| MS.gene056045 | MS.gene072762 | 0.869116 | 3.94E-66 | -1.69E-46 |
| MS.gene056097 | MS.gene072762 | 0.81686 | 4.45E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene072762 | 0.875432 | 3.09E-68 | -1.69E-46 |
| MS.gene056308 | MS.gene072762 | 0.817347 | 3.46E-52 | -1.69E-46 |
| MS.gene056403 | MS.gene072762 | 0.800901 | 1.16E-48 | -1.69E-46 |
| MS.gene056507 | MS.gene072762 | 0.803032 | 4.23E-49 | -1.69E-46 |
| MS.gene056509 | MS.gene072762 | 0.811754 | 5.98E-51 | -1.69E-46 |
| MS.gene056578 | MS.gene072762 | 0.810556 | 1.09E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene072762 | 0.812672 | 3.77E-51 | -1.69E-46 |
| MS.gene056786 | MS.gene072762 | 0.803405 | 3.54E-49 | -1.69E-46 |
| MS.gene056831 | MS.gene072762 | 0.865757 | 4.68E-65 | -1.69E-46 |
| MS.gene05686 | MS.gene072762 | 0.834653 | 2.65E-56 | -1.69E-46 |
| MS.gene05690 | MS.gene072762 | 0.80171 | 7.92E-49 | -1.69E-46 |
| MS.gene056973 | MS.gene072762 | 0.818092 | 2.35E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene072762 | 0.811758 | 5.97E-51 | -1.69E-46 |
| MS.gene057034 | MS.gene072762 | 0.817983 | 2.48E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene072762 | 0.834345 | 3.16E-56 | -1.69E-46 |
| MS.gene057155 | MS.gene072762 | 0.808434 | 3.10E-50 | -1.69E-46 |
| MS.gene05781 | MS.gene072762 | 0.804617 | 1.98E-49 | -1.69E-46 |
| MS.gene057890 | MS.gene072762 | -0.838499 | 2.77E-57 | -1.69E-46 |
| MS.gene057893 | MS.gene072762 | -0.820103 | 8.19E-53 | -1.69E-46 |
| MS.gene057919 | MS.gene072762 | 0.829928 | 3.91E-55 | -1.69E-46 |
| MS.gene058054 | MS.gene072762 | 0.801012 | 1.10E-48 | -1.69E-46 |
| MS.gene058149 | MS.gene072762 | 0.802892 | 4.52E-49 | -1.69E-46 |
| MS.gene058159 | MS.gene072762 | 0.823869 | 1.10E-53 | -1.69E-46 |
| MS.gene058292 | MS.gene072762 | 0.83654 | 8.81E-57 | -1.69E-46 |
| MS.gene058429 | MS.gene072762 | 0.817504 | 3.19E-52 | -1.69E-46 |
| MS.gene058592 | MS.gene072762 | 0.804256 | 2.36E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene072762 | 0.802144 | 6.45E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene072762 | 0.817321 | 3.50E-52 | -1.69E-46 |
| MS.gene059146 | MS.gene072762 | 0.878833 | 2.04E-69 | -1.69E-46 |
| MS.gene059170 | MS.gene072762 | 0.867403 | 1.40E-65 | -1.69E-46 |
| MS.gene05952 | MS.gene072762 | 0.809614 | 1.73E-50 | -1.69E-46 |
| MS.gene059778 | MS.gene072762 | 0.85346 | 2.36E-61 | -1.69E-46 |
| MS.gene05985 | MS.gene072762 | -0.801588 | 8.39E-49 | -1.69E-46 |
| MS.gene059901 | MS.gene072762 | -0.811226 | 7.78E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene072762 | 0.805507 | 1.29E-49 | -1.69E-46 |
| MS.gene06010 | MS.gene072762 | 0.814446 | 1.53E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene072762 | 0.810626 | 1.05E-50 | -1.69E-46 |
| MS.gene060259 | MS.gene072762 | 0.826007 | 3.43E-54 | -1.69E-46 |
| MS.gene060343 | MS.gene072762 | -0.812385 | 4.35E-51 | -1.69E-46 |
| MS.gene060435 | MS.gene072762 | 0.834063 | 3.72E-56 | -1.69E-46 |
| MS.gene060522 | MS.gene072762 | 0.807781 | 4.27E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene072762 | 0.839303 | 1.72E-57 | -1.69E-46 |
| MS.gene060777 | MS.gene072762 | 0.808012 | 3.82E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene072762 | 0.83185 | 1.32E-55 | -1.69E-46 |
| MS.gene060933 | MS.gene072762 | 0.881653 | 2.01E-70 | -1.69E-46 |
| MS.gene060935 | MS.gene072762 | 0.852781 | 3.69E-61 | -1.69E-46 |
| MS.gene060937 | MS.gene072762 | 0.870582 | 1.31E-66 | -1.69E-46 |
| MS.gene061006 | MS.gene072762 | 0.820154 | 7.97E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene072762 | 0.88802 | 8.54E-73 | -1.69E-46 |
| MS.gene061160 | MS.gene072762 | 0.846723 | 1.82E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95813 | MS.gene072762 | PPI |
| MS.gene072762 | MS.gene81472 | PPI |
| MS.gene072762 | MS.gene83993 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072762.t1 | MTR_5g009930 | 95.989 | 374 | 8 | 1 | 1 | 367 | 1 | 374 | 0.0 | 736 |
| MS.gene072762.t1 | MTR_5g009930 | 95.066 | 304 | 8 | 1 | 1 | 297 | 1 | 304 | 0.0 | 590 |
| MS.gene072762.t1 | MTR_6g053290 | 62.567 | 374 | 116 | 5 | 1 | 367 | 1 | 357 | 4.35e-164 | 463 |
| MS.gene072762.t1 | MTR_6g053290 | 59.694 | 392 | 116 | 6 | 1 | 367 | 1 | 375 | 2.31e-159 | 452 |
| MS.gene072762.t1 | MTR_5g012030 | 38.835 | 103 | 63 | 0 | 1 | 103 | 1 | 103 | 1.16e-16 | 81.6 |
| MS.gene072762.t1 | MTR_5g012030 | 29.060 | 117 | 83 | 0 | 1 | 117 | 391 | 507 | 8.28e-12 | 67.0 |
| MS.gene072762.t1 | MTR_3g452710 | 34.211 | 114 | 75 | 0 | 2 | 115 | 11 | 124 | 1.17e-15 | 78.6 |
| MS.gene072762.t1 | MTR_3g452710 | 34.211 | 114 | 75 | 0 | 2 | 115 | 11 | 124 | 1.28e-15 | 78.2 |
| MS.gene072762.t1 | MTR_6g060735 | 43.000 | 100 | 39 | 4 | 207 | 299 | 59 | 147 | 1.01e-13 | 68.9 |
| MS.gene072762.t1 | MTR_7g115280 | 31.250 | 112 | 77 | 0 | 2 | 113 | 335 | 446 | 4.58e-12 | 67.4 |
| MS.gene072762.t1 | MTR_6g060740 | 46.154 | 78 | 31 | 2 | 222 | 297 | 4 | 72 | 1.84e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072762.t1 | AT4G23570 | 65.323 | 372 | 100 | 8 | 1 | 366 | 1 | 349 | 5.95e-157 | 445 |
| MS.gene072762.t1 | AT4G23570 | 65.323 | 372 | 100 | 8 | 1 | 366 | 1 | 349 | 5.95e-157 | 445 |
| MS.gene072762.t1 | AT4G11260 | 63.415 | 369 | 122 | 5 | 1 | 367 | 1 | 358 | 1.69e-156 | 444 |
| MS.gene072762.t1 | AT4G23570 | 65.147 | 373 | 100 | 9 | 1 | 366 | 1 | 350 | 3.08e-155 | 441 |
| MS.gene072762.t1 | AT2G42810 | 29.747 | 158 | 110 | 1 | 2 | 159 | 13 | 169 | 1.43e-16 | 81.6 |
| MS.gene072762.t1 | AT2G42810 | 29.747 | 158 | 110 | 1 | 2 | 159 | 13 | 169 | 1.56e-16 | 81.3 |
| MS.gene072762.t1 | AT2G42810 | 31.944 | 144 | 96 | 2 | 2 | 145 | 13 | 154 | 7.25e-16 | 79.3 |
| MS.gene072762.t1 | AT2G42810 | 31.944 | 144 | 96 | 2 | 2 | 145 | 13 | 154 | 7.25e-16 | 79.3 |
| MS.gene072762.t1 | AT2G42810 | 31.944 | 144 | 96 | 2 | 2 | 145 | 13 | 154 | 7.25e-16 | 79.3 |
| MS.gene072762.t1 | AT4G12400 | 34.783 | 115 | 75 | 0 | 1 | 115 | 1 | 115 | 1.07e-15 | 79.0 |
| MS.gene072762.t1 | AT4G12400 | 31.858 | 113 | 77 | 0 | 1 | 113 | 368 | 480 | 1.68e-13 | 72.0 |
| MS.gene072762.t1 | AT4G12400 | 34.783 | 115 | 75 | 0 | 1 | 115 | 1 | 115 | 1.14e-15 | 79.0 |
| MS.gene072762.t1 | AT4G12400 | 31.858 | 113 | 77 | 0 | 1 | 113 | 368 | 480 | 1.61e-13 | 72.0 |
| MS.gene072762.t1 | AT1G04190 | 34.091 | 132 | 77 | 2 | 5 | 129 | 18 | 146 | 1.30e-15 | 77.4 |
| MS.gene072762.t1 | AT1G62740 | 38.614 | 101 | 62 | 0 | 1 | 101 | 1 | 101 | 7.44e-15 | 76.3 |
| MS.gene072762.t1 | AT1G62740 | 29.365 | 126 | 89 | 0 | 1 | 126 | 381 | 506 | 4.00e-12 | 67.8 |
| MS.gene072762.t1 | AT1G12270 | 36.634 | 101 | 64 | 0 | 1 | 101 | 1 | 101 | 2.21e-14 | 74.7 |
| MS.gene072762.t1 | AT1G12270 | 29.365 | 126 | 89 | 0 | 1 | 126 | 382 | 507 | 5.24e-12 | 67.4 |
| MS.gene072762.t1 | AT3G04710 | 34.737 | 95 | 62 | 0 | 8 | 102 | 558 | 652 | 2.81e-13 | 71.6 |
| MS.gene072762.t1 | AT3G04710 | 31.429 | 105 | 72 | 0 | 8 | 112 | 333 | 437 | 4.36e-13 | 70.5 |
| MS.gene072762.t1 | AT3G04710 | 31.429 | 105 | 72 | 0 | 8 | 112 | 334 | 438 | 4.41e-13 | 70.5 |
| MS.gene072762.t1 | AT4G22670 | 38.636 | 88 | 54 | 0 | 2 | 89 | 123 | 210 | 5.54e-12 | 67.0 |
Find 85 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCAGACGAATTTCAATTT+TGG | 0.202093 | 5.3:+3680423 | None:intergenic |
| TAAAATTCAAACCTGTATTT+TGG | 0.207831 | 5.3:+3681445 | None:intergenic |
| AGATAAGCTTTAGACAAATT+AGG | 0.217599 | 5.3:+3682727 | None:intergenic |
| TCATGTCCTCATCTGCATTT+TGG | 0.223925 | 5.3:+3679364 | None:intergenic |
| TGCATTTGTTTGGGATTCTT+TGG | 0.233284 | 5.3:+3681483 | None:intergenic |
| CTGAAGGCACGATTATCTTT+TGG | 0.246738 | 5.3:+3680347 | None:intergenic |
| ACCACAACTTTGCACTTATC+AGG | 0.255504 | 5.3:+3680454 | None:intergenic |
| TTGAATCAAATTAGTGAATC+TGG | 0.262555 | 5.3:+3682523 | None:intergenic |
| AATTACCAACCTCGATTGTT+TGG | 0.273321 | 5.3:-3680656 | MS.gene072762:CDS |
| GATAAGCTTTAGACAAATTA+GGG | 0.273607 | 5.3:+3682728 | None:intergenic |
| CTGGTGCAACTGCATTTGTT+TGG | 0.277385 | 5.3:+3681473 | None:intergenic |
| CAAAAGCTGAAGCAATTAAT+TGG | 0.291230 | 5.3:-3680402 | MS.gene072762:CDS |
| CAACCACTTCTTCTGGCTTC+TGG | 0.307212 | 5.3:+3680915 | None:intergenic |
| AACAGACGCAGCAGATGATT+TGG | 0.309310 | 5.3:+3681543 | None:intergenic |
| AGCTGTTTCTGATGCTAATA+AGG | 0.317013 | 5.3:-3682764 | MS.gene072762:CDS |
| ATTGTCACAACCACTTCTTC+TGG | 0.326332 | 5.3:+3680908 | None:intergenic |
| TTCTTCACCTCCATGCCTTC+CGG | 0.334065 | 5.3:+3679121 | None:intergenic |
| CATCACTCTTATCACACATA+TGG | 0.343614 | 5.3:+3681512 | None:intergenic |
| GCAGATGATTTGGGTTCATT+TGG | 0.361318 | 5.3:+3681553 | None:intergenic |
| TGGTGCAACTGCATTTGTTT+GGG | 0.369271 | 5.3:+3681474 | None:intergenic |
| GAACAGTGCTTTCAACTGAT+TGG | 0.383406 | 5.3:-3679180 | MS.gene072762:CDS |
| AGTGTTACCATTGATGTTCC+TGG | 0.384771 | 5.3:-3680692 | MS.gene072762:CDS |
| TGCTAAGATTGCACTTGAAA+AGG | 0.395581 | 5.3:-3682570 | MS.gene072762:CDS |
| ATTTGGGTTCATTTGGTGGT+AGG | 0.397979 | 5.3:+3681560 | None:intergenic |
| GCTAAGATTGCACTTGAAAA+GGG | 0.398330 | 5.3:-3682569 | MS.gene072762:CDS |
| GACTAAGGATTGGGATAAGT+TGG | 0.404465 | 5.3:-3679961 | MS.gene072762:CDS |
| CAAATTAGGGTTCAATTGAA+TGG | 0.412131 | 5.3:+3682741 | None:intergenic |
| ACAGACGCAGCAGATGATTT+GGG | 0.413414 | 5.3:+3681544 | None:intergenic |
| CAAAAGATAATCGTGCCTTC+AGG | 0.416666 | 5.3:-3680346 | MS.gene072762:intron |
| AGCAATTAATTGGACATCTC+TGG | 0.420967 | 5.3:-3680392 | MS.gene072762:CDS |
| GTTGTGACAATATTTGCAAA+AGG | 0.432373 | 5.3:-3680896 | MS.gene072762:CDS |
| GACTTTGATGACGGATATGC+AGG | 0.432961 | 5.3:+3679987 | None:intergenic |
| AAGGCATGGAGGTGAAGAAA+TGG | 0.447230 | 5.3:-3679117 | MS.gene072762:CDS |
| GAGAAAGAAGAAAAGCTTGA+TGG | 0.457639 | 5.3:-3679423 | MS.gene072762:CDS |
| TTTGGGTTCATTTGGTGGTA+GGG | 0.457656 | 5.3:+3681561 | None:intergenic |
| GAAAATGTTGTTGTGGACTT+TGG | 0.457793 | 5.3:-3680863 | MS.gene072762:CDS |
| TTCAACTGATTGGAAAGAAG+TGG | 0.459056 | 5.3:-3679170 | MS.gene072762:CDS |
| CAAAGTCAAGGACTAAGGAT+TGG | 0.459819 | 5.3:-3679971 | MS.gene072762:CDS |
| AACCAAAATTGAAATTCGTC+TGG | 0.463865 | 5.3:-3680425 | MS.gene072762:CDS |
| GTTGGTAATTGTAGGCATCT+TGG | 0.464918 | 5.3:+3680669 | None:intergenic |
| GGCGAAGAGATTGGCGTTGG+TGG | 0.466384 | 5.3:+3682828 | None:intergenic |
| CAATCGAGGTTGGTAATTGT+AGG | 0.468328 | 5.3:+3680661 | None:intergenic |
| TGCTCGATCGGCGAAGAGAT+TGG | 0.468339 | 5.3:+3682819 | None:intergenic |
| ATCACTCTTATCACACATAT+GGG | 0.469660 | 5.3:+3681513 | None:intergenic |
| GATGATTTGGGTTCATTTGG+TGG | 0.474276 | 5.3:+3681556 | None:intergenic |
| CACCAGTCAGACCAAAATAC+AGG | 0.477363 | 5.3:-3681456 | MS.gene072762:intron |
| AAAGTCAAGGACTAAGGATT+GGG | 0.477566 | 5.3:-3679970 | MS.gene072762:CDS |
| ACATCGCAGCTGGAGTCAAA+TGG | 0.493337 | 5.3:-3679202 | MS.gene072762:intron |
| TAATTGTAGGCATCTTGGCC+AGG | 0.499111 | 5.3:+3680674 | None:intergenic |
| GTCATCAAAGTCAAGGACTA+AGG | 0.505114 | 5.3:-3679976 | MS.gene072762:CDS |
| TTGTGACAATATTTGCAAAA+GGG | 0.517563 | 5.3:-3680895 | MS.gene072762:CDS |
| CTAAAGCTTATCTTCGCAAA+GGG | 0.517803 | 5.3:-3682717 | MS.gene072762:intron |
| AGGCATGGAGGTGAAGAAAT+GGG | 0.525573 | 5.3:-3679116 | MS.gene072762:CDS |
| GTGGGATCAAAGAAGGTGGA+AGG | 0.527275 | 5.3:-3679151 | MS.gene072762:CDS |
| ACCTGATAAGTGCAAAGTTG+TGG | 0.535317 | 5.3:-3680455 | MS.gene072762:CDS |
| TCTAAAGCTTATCTTCGCAA+AGG | 0.536711 | 5.3:-3682718 | MS.gene072762:CDS |
| TGTCAACGCTTCATTGCTGC+TGG | 0.540905 | 5.3:-3682497 | MS.gene072762:intron |
| TTGGTGGTAGGGTGCTCGTA+AGG | 0.545824 | 5.3:+3681572 | None:intergenic |
| TTAGTCCTTGACTTTGATGA+CGG | 0.547734 | 5.3:+3679978 | None:intergenic |
| GAAAGAAGTGGGATCAAAGA+AGG | 0.549782 | 5.3:-3679158 | MS.gene072762:CDS |
| AGAAGTGGGATCAAAGAAGG+TGG | 0.550429 | 5.3:-3679155 | MS.gene072762:CDS |
| TCAACTGATTGGAAAGAAGT+GGG | 0.552602 | 5.3:-3679169 | MS.gene072762:CDS |
| AGGAAGTCCTCCGGAAGGCA+TGG | 0.553293 | 5.3:-3679131 | MS.gene072762:CDS |
| GATATAAGATTGTGCTCGAT+CGG | 0.556317 | 5.3:+3682807 | None:intergenic |
| CCTTTCCAAACAATCGAGGT+TGG | 0.558787 | 5.3:+3680651 | None:intergenic |
| TTCACCTCCATGCCTTCCGG+AGG | 0.562191 | 5.3:+3679124 | None:intergenic |
| ATCGGCGAAGAGATTGGCGT+TGG | 0.564003 | 5.3:+3682825 | None:intergenic |
| TTAGTGAATCTGGAATCATC+AGG | 0.564312 | 5.3:+3682533 | None:intergenic |
| TTACCAGAAGCCAGAAGAAG+TGG | 0.567554 | 5.3:-3680918 | MS.gene072762:CDS |
| ATCTTGGCCAGGAACATCAA+TGG | 0.567721 | 5.3:+3680685 | None:intergenic |
| CCAACCTCGATTGTTTGGAA+AGG | 0.572336 | 5.3:-3680651 | MS.gene072762:intron |
| GCGAAGAGATTGGCGTTGGT+GGG | 0.574698 | 5.3:+3682829 | None:intergenic |
| GAAGGTGGAAGGAAGTCCTC+CGG | 0.593651 | 5.3:-3679140 | MS.gene072762:CDS |
| GACATCTCTGGAATATAGCA+AGG | 0.594841 | 5.3:-3680380 | MS.gene072762:CDS |
| CTAAGATTGCACTTGAAAAG+GGG | 0.595811 | 5.3:-3682568 | MS.gene072762:CDS |
| ACCAGCAGAAAATGTTGTTG+TGG | 0.599108 | 5.3:-3680870 | MS.gene072762:CDS |
| TTTCTGCAGTTCAATCTGAA+AGG | 0.605938 | 5.3:-3680010 | MS.gene072762:intron |
| CATATCCGTCATCAAAGTCA+AGG | 0.618238 | 5.3:-3679983 | MS.gene072762:CDS |
| GTTACCTTTCCAAACAATCG+AGG | 0.633356 | 5.3:+3680647 | None:intergenic |
| TAAGATTGCACTTGAAAAGG+GGG | 0.634057 | 5.3:-3682567 | MS.gene072762:CDS |
| TATTTACCAAAATGCAGATG+AGG | 0.640349 | 5.3:-3679370 | MS.gene072762:CDS |
| AAAATGCAGATGAGGACATG+AGG | 0.646902 | 5.3:-3679362 | MS.gene072762:CDS |
| GTGGAAGGAAGTCCTCCGGA+AGG | 0.675797 | 5.3:-3679136 | MS.gene072762:CDS |
| AAGTCCTCCGGAAGGCATGG+AGG | 0.703156 | 5.3:-3679128 | MS.gene072762:CDS |
| TGCTTGAGAGTAGAAATCAA+CGG | 0.719116 | 5.3:+3682864 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAGTTATACAATAATA+AGG | + | chr5.3:3680792-3680811 | None:intergenic | 10.0% |
| !!! | GATTTTAATTATACTATTAT+TGG | - | chr5.3:3682737-3682756 | MS.gene072762:CDS | 10.0% |
| !!! | TAATTTTCTCTAATTATTAT+CGG | - | chr5.3:3681833-3681852 | MS.gene072762:intron | 10.0% |
| !!! | TGATTTTTGTAAATTTTATT+TGG | - | chr5.3:3679595-3679614 | MS.gene072762:intron | 10.0% |
| !!! | TTATGTTTTTATTTATTTAG+GGG | - | chr5.3:3682135-3682154 | MS.gene072762:intron | 10.0% |
| !!! | TTTGAATATTTATGTTTTTA+GGG | - | chr5.3:3679361-3679380 | MS.gene072762:CDS | 10.0% |
| !!! | TTTTAATCAAAAGTTTTTAA+GGG | - | chr5.3:3680852-3680871 | MS.gene072762:intron | 10.0% |
| !!! | TTTTGAATATTTATGTTTTT+AGG | - | chr5.3:3679360-3679379 | MS.gene072762:CDS | 10.0% |
| !! | AAAAAATTATGTATGCAAAT+TGG | - | chr5.3:3682280-3682299 | MS.gene072762:intron | 15.0% |
| !! | ACAATTTCAATTTAAAAACT+TGG | - | chr5.3:3679870-3679889 | MS.gene072762:intron | 15.0% |
| !! | AGTGATATACATATAAAATA+AGG | + | chr5.3:3681262-3681281 | None:intergenic | 15.0% |
| !! | TAATTGTTGAATGAATAAAT+AGG | - | chr5.3:3681946-3681965 | MS.gene072762:intron | 15.0% |
| !! | TAGATATTAAAAAAATTTGC+AGG | + | chr5.3:3679834-3679853 | None:intergenic | 15.0% |
| !!! | ACTTTTGATTAAAAGTTTTT+TGG | + | chr5.3:3680846-3680865 | None:intergenic | 15.0% |
| !!! | CTTTTAATCAAAAGTTTTTA+AGG | - | chr5.3:3680851-3680870 | MS.gene072762:intron | 15.0% |
| !!! | TATTCATGTATTCAAAATTT+TGG | + | chr5.3:3682505-3682524 | None:intergenic | 15.0% |
| !!! | TGAATTTGTTTTATATTTGT+AGG | - | chr5.3:3679408-3679427 | MS.gene072762:CDS | 15.0% |
| !!! | TGCAAATTTTTTTAATATCT+AGG | - | chr5.3:3679833-3679852 | MS.gene072762:intron | 15.0% |
| !!! | TTATTGTCATTTTATGAATA+CGG | - | chr5.3:3682310-3682329 | MS.gene072762:intron | 15.0% |
| !! | AAAAATTATCTAGTCATCAA+AGG | + | chr5.3:3680283-3680302 | None:intergenic | 20.0% |
| !! | AGATGAAATTAACATACAAT+TGG | + | chr5.3:3682529-3682548 | None:intergenic | 20.0% |
| !! | ATATAAAATAAGGAGAACAA+TGG | + | chr5.3:3681252-3681271 | None:intergenic | 20.0% |
| !! | CAATGTCAATTATTAAAACA+AGG | + | chr5.3:3682572-3682591 | None:intergenic | 20.0% |
| !! | TGAAAAAAATAAGAAACATC+AGG | + | chr5.3:3680427-3680446 | None:intergenic | 20.0% |
| !! | TTAAATAAAAAACATGCAAG+CGG | + | chr5.3:3680747-3680766 | None:intergenic | 20.0% |
| !!! | AATATTGTGGTTTAGATTTT+CGG | - | chr5.3:3680354-3680373 | MS.gene072762:CDS | 20.0% |
| !!! | ACTGTATTTAATTTGTGAAA+AGG | - | chr5.3:3680246-3680265 | MS.gene072762:intron | 20.0% |
| !!! | ATGTTTCTTATTTTTTTCAG+AGG | - | chr5.3:3680428-3680447 | MS.gene072762:CDS | 20.0% |
| !!! | CTTAAGTTTAGTTATGATTT+TGG | - | chr5.3:3682173-3682192 | MS.gene072762:intron | 20.0% |
| !!! | CTTCATTCATTTAATTTTGT+TGG | - | chr5.3:3680635-3680654 | MS.gene072762:intron | 20.0% |
| !!! | TAAAATTCAAACCTGTATTT+TGG | + | chr5.3:3680591-3680610 | None:intergenic | 20.0% |
| !!! | TATTATCTGTTTTGTTCATA+AGG | + | chr5.3:3681559-3681578 | None:intergenic | 20.0% |
| !!! | TATTGTCATTTTATGAATAC+GGG | - | chr5.3:3682311-3682330 | MS.gene072762:intron | 20.0% |
| !!! | TGGATTAATTTTAAAACTGT+AGG | - | chr5.3:3682389-3682408 | MS.gene072762:intron | 20.0% |
| !!! | TGTTTTAATAATTGACATTG+TGG | - | chr5.3:3682572-3682591 | MS.gene072762:CDS | 20.0% |
| !!! | TTTTTCTTTTGCAAATATTG+TGG | - | chr5.3:3680341-3680360 | MS.gene072762:intron | 20.0% |
| ! | AAAAATTTGCAAGTCATCAA+AGG | + | chr5.3:3680080-3680099 | None:intergenic | 25.0% |
| ! | AAAATTTGCAGGAGTAAATA+TGG | + | chr5.3:3679823-3679842 | None:intergenic | 25.0% |
| ! | ATCAGATCATATAAACAAGT+TGG | + | chr5.3:3680218-3680237 | None:intergenic | 25.0% |
| ! | ATTATGTATGCAAATTGGTT+AGG | - | chr5.3:3682285-3682304 | MS.gene072762:intron | 25.0% |
| ! | ATTCAACAATTACAAAACCA+TGG | + | chr5.3:3681938-3681957 | None:intergenic | 25.0% |
| ! | ATTGATATTACTGTTTGCTT+TGG | - | chr5.3:3681477-3681496 | MS.gene072762:CDS | 25.0% |
| ! | ATTGCAATGAACAACATTAA+TGG | + | chr5.3:3681998-3682017 | None:intergenic | 25.0% |
| ! | TATATCACTCTTAATATACC+TGG | - | chr5.3:3681273-3681292 | MS.gene072762:intron | 25.0% |
| ! | TCAGAACTACAATAATCTAA+TGG | + | chr5.3:3682221-3682240 | None:intergenic | 25.0% |
| ! | TGAAACTAGACAATCTTAAA+TGG | - | chr5.3:3682456-3682475 | MS.gene072762:intron | 25.0% |
| ! | TGAATATAGACTGAAATTAC+TGG | - | chr5.3:3681041-3681060 | MS.gene072762:intron | 25.0% |
| ! | TGTTAATGTACTTAAGAGTT+AGG | + | chr5.3:3681312-3681331 | None:intergenic | 25.0% |
| ! | TTCAAAAGAAATAGACAAAC+TGG | + | chr5.3:3681005-3681024 | None:intergenic | 25.0% |
| ! | TTGAATCAAATTAGTGAATC+TGG | + | chr5.3:3679513-3679532 | None:intergenic | 25.0% |
| ! | TTGCAATGAACAACATTAAT+GGG | + | chr5.3:3681997-3682016 | None:intergenic | 25.0% |
| ! | TTGTGACAATATTTGCAAAA+GGG | - | chr5.3:3681138-3681157 | MS.gene072762:intron | 25.0% |
| !! | TGACTAGATAATTTTTGTGA+AGG | - | chr5.3:3680287-3680306 | MS.gene072762:intron | 25.0% |
| !!! | AGATAAGCTTTAGACAAATT+AGG | + | chr5.3:3679309-3679328 | None:intergenic | 25.0% |
| !!! | ATGTTTTTAGGGTTGTTTTT+GGG | - | chr5.3:3679372-3679391 | MS.gene072762:CDS | 25.0% |
| !!! | ATTTATTTAGGGGTTTTGAA+GGG | - | chr5.3:3682145-3682164 | MS.gene072762:intron | 25.0% |
| !!! | GATAAGCTTTAGACAAATTA+GGG | + | chr5.3:3679308-3679327 | None:intergenic | 25.0% |
| !!! | TACTTCACTTTTTTACATTG+AGG | - | chr5.3:3682335-3682354 | MS.gene072762:intron | 25.0% |
| !!! | TATGTTTTTAGGGTTGTTTT+TGG | - | chr5.3:3679371-3679390 | MS.gene072762:CDS | 25.0% |
| !!! | TATTTATTTAGGGGTTTTGA+AGG | - | chr5.3:3682144-3682163 | MS.gene072762:intron | 25.0% |
| !!! | TGTTTTAAGGAAATAGTAAC+TGG | + | chr5.3:3680907-3680926 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTCATAAGGAAAA+GGG | + | chr5.3:3681552-3681571 | None:intergenic | 25.0% |
| AACCAAAATTGAAATTCGTC+TGG | - | chr5.3:3681608-3681627 | MS.gene072762:intron | 30.0% | |
| ACTTATGACAGACTATGAAA+TGG | + | chr5.3:3680696-3680715 | None:intergenic | 30.0% | |
| AGATCACAAATCAATGGAAT+TGG | + | chr5.3:3680980-3680999 | None:intergenic | 30.0% | |
| ATCACTCTTATCACACATAT+GGG | + | chr5.3:3680523-3680542 | None:intergenic | 30.0% | |
| CAAAAGCTGAAGCAATTAAT+TGG | - | chr5.3:3681631-3681650 | MS.gene072762:intron | 30.0% | |
| CAAATTAGGGTTCAATTGAA+TGG | + | chr5.3:3679295-3679314 | None:intergenic | 30.0% | |
| GAATCAGTTTAATTGCTGAA+GGG | - | chr5.3:3679660-3679679 | MS.gene072762:intron | 30.0% | |
| GTTGTGACAATATTTGCAAA+AGG | - | chr5.3:3681137-3681156 | MS.gene072762:intron | 30.0% | |
| TAGTGCTTTCAATTACAGAA+TGG | - | chr5.3:3681903-3681922 | MS.gene072762:intron | 30.0% | |
| TATTTACCAAAATGCAGATG+AGG | - | chr5.3:3682663-3682682 | MS.gene072762:intron | 30.0% | |
| TGAATCAGTTTAATTGCTGA+AGG | - | chr5.3:3679659-3679678 | MS.gene072762:intron | 30.0% | |
| TGGTTAAAACAGTACTCAAT+AGG | + | chr5.3:3682485-3682504 | None:intergenic | 30.0% | |
| TTCAGTGTAATCATAACTGT+CGG | + | chr5.3:3681806-3681825 | None:intergenic | 30.0% | |
| TTCCTTAAAACAAACATGCT+TGG | - | chr5.3:3680915-3680934 | MS.gene072762:CDS | 30.0% | |
| TTCTGTTAGATGACATGTTT+CGG | - | chr5.3:3680715-3680734 | MS.gene072762:intron | 30.0% | |
| ! | AAAATTAATCCACTTGTTGC+TGG | + | chr5.3:3682381-3682400 | None:intergenic | 30.0% |
| ! | ACTGGAGATAATTTGTGAAA+AGG | - | chr5.3:3680043-3680062 | MS.gene072762:intron | 30.0% |
| ! | TTAGGAAGTTTTCAATATCC+AGG | + | chr5.3:3681294-3681313 | None:intergenic | 30.0% |
| !! | CTGCATTTTGGTAAATATCA+CGG | + | chr5.3:3682660-3682679 | None:intergenic | 30.0% |
| !! | CTGTTTTGTTCATAAGGAAA+AGG | + | chr5.3:3681553-3681572 | None:intergenic | 30.0% |
| !! | GTTTTGAGTAAGCTTACTTT+GGG | - | chr5.3:3680819-3680838 | MS.gene072762:intron | 30.0% |
| !! | TGTTTTGAGTAAGCTTACTT+TGG | - | chr5.3:3680818-3680837 | MS.gene072762:intron | 30.0% |
| !! | TTTTGAGTAAGCTTACTTTG+GGG | - | chr5.3:3680820-3680839 | MS.gene072762:intron | 30.0% |
| !!! | GTTTATGCGATTGGTTTTTA+GGG | - | chr5.3:3680019-3680038 | MS.gene072762:intron | 30.0% |
| !!! | TGTTTATGCGATTGGTTTTT+AGG | - | chr5.3:3680018-3680037 | MS.gene072762:intron | 30.0% |
| !!! | TTCACTTTTTTACATTGAGG+TGG | - | chr5.3:3682338-3682357 | MS.gene072762:intron | 30.0% |
| !!! | TTTTTTACATTGAGGTGGTA+TGG | - | chr5.3:3682343-3682362 | MS.gene072762:intron | 30.0% |
| AAAGTCAAGGACTAAGGATT+GGG | - | chr5.3:3682063-3682082 | MS.gene072762:intron | 35.0% | |
| AAGGAAAAGGGTAAGTTACT+TGG | + | chr5.3:3681540-3681559 | None:intergenic | 35.0% | |
| AATTACCAACCTCGATTGTT+TGG | - | chr5.3:3681377-3681396 | MS.gene072762:intron | 35.0% | |
| ACACCTTGAAATTTACTCGT+TGG | - | chr5.3:3679925-3679944 | MS.gene072762:intron | 35.0% | |
| AGCAATTAATTGGACATCTC+TGG | - | chr5.3:3681641-3681660 | MS.gene072762:intron | 35.0% | |
| AGTCCAACGAGTAAATTTCA+AGG | + | chr5.3:3679931-3679950 | None:intergenic | 35.0% | |
| CATCACTCTTATCACACATA+TGG | + | chr5.3:3680524-3680543 | None:intergenic | 35.0% | |
| CTAAAGCTTATCTTCGCAAA+GGG | - | chr5.3:3679316-3679335 | MS.gene072762:intron | 35.0% | |
| CTAAGATTGCACTTGAAAAG+GGG | - | chr5.3:3679465-3679484 | MS.gene072762:intron | 35.0% | |
| CTGGAAAGATCACAAATCAA+TGG | + | chr5.3:3680986-3681005 | None:intergenic | 35.0% | |
| CTGTAGGACATTGTTAAATG+TGG | - | chr5.3:3682405-3682424 | MS.gene072762:intron | 35.0% | |
| GAAAATGTTGTTGTGGACTT+TGG | - | chr5.3:3681170-3681189 | MS.gene072762:intron | 35.0% | |
| GAAGAAATAGCAGCAAAAAC+AGG | + | chr5.3:3680619-3680638 | None:intergenic | 35.0% | |
| GAATGAGTAGTGATGAAACT+AGG | - | chr5.3:3679971-3679990 | MS.gene072762:CDS | 35.0% | |
| GAGAAAGAAGAAAAGCTTGA+TGG | - | chr5.3:3682610-3682629 | MS.gene072762:intron | 35.0% | |
| GAGAGACGAAAGTTGTATTT+AGG | - | chr5.3:3682433-3682452 | MS.gene072762:intron | 35.0% | |
| GATATAAGATTGTGCTCGAT+CGG | + | chr5.3:3679229-3679248 | None:intergenic | 35.0% | |
| GCTAAGATTGCACTTGAAAA+GGG | - | chr5.3:3679464-3679483 | MS.gene072762:intron | 35.0% | |
| GTATGTTAATGTGTTGTGAC+TGG | - | chr5.3:3679622-3679641 | MS.gene072762:intron | 35.0% | |
| TAAGATTGCACTTGAAAAGG+GGG | - | chr5.3:3679466-3679485 | MS.gene072762:intron | 35.0% | |
| TCAACTGATTGGAAAGAAGT+GGG | - | chr5.3:3682864-3682883 | MS.gene072762:CDS | 35.0% | |
| TCAATAAAACCCTGAAAACC+TGG | + | chr5.3:3679788-3679807 | None:intergenic | 35.0% | |
| TCTGTTAGATGACATGTTTC+GGG | - | chr5.3:3680716-3680735 | MS.gene072762:intron | 35.0% | |
| TGCTAAGATTGCACTTGAAA+AGG | - | chr5.3:3679463-3679482 | MS.gene072762:intron | 35.0% | |
| TGCTTACTTGTTTATGCGAT+TGG | - | chr5.3:3680010-3680029 | MS.gene072762:intron | 35.0% | |
| TGCTTGAGAGTAGAAATCAA+CGG | + | chr5.3:3679172-3679191 | None:intergenic | 35.0% | |
| TTAGTCCTTGACTTTGATGA+CGG | + | chr5.3:3682058-3682077 | None:intergenic | 35.0% | |
| TTCAACTGATTGGAAAGAAG+TGG | - | chr5.3:3682863-3682882 | MS.gene072762:CDS | 35.0% | |
| TTCAGGTGAGTTCATTACTT+GGG | - | chr5.3:3681704-3681723 | MS.gene072762:intron | 35.0% | |
| TTGCGGTATCAATCTATGAA+GGG | - | chr5.3:3681738-3681757 | MS.gene072762:intron | 35.0% | |
| TTGGAAACACAAACAGTAAC+TGG | - | chr5.3:3681496-3681515 | MS.gene072762:CDS | 35.0% | |
| TTTCTGCAGTTCAATCTGAA+AGG | - | chr5.3:3682023-3682042 | MS.gene072762:intron | 35.0% | |
| TTTGCGGTATCAATCTATGA+AGG | - | chr5.3:3681737-3681756 | MS.gene072762:intron | 35.0% | |
| ! | AGTCTAATGAGCGAATTTTG+AGG | + | chr5.3:3680162-3680181 | None:intergenic | 35.0% |
| ! | CTTTTCTTCTTTCTCCTGAA+AGG | + | chr5.3:3682605-3682624 | None:intergenic | 35.0% |
| ! | GGAGCTTTTATGAAATCATG+TGG | + | chr5.3:3682200-3682219 | None:intergenic | 35.0% |
| ! | TCTAAAGCTTATCTTCGCAA+AGG | - | chr5.3:3679315-3679334 | MS.gene072762:intron | 35.0% |
| ! | TGCATTTGTTTGGGATTCTT+TGG | + | chr5.3:3680553-3680572 | None:intergenic | 35.0% |
| ! | TGCCAGACGAATTTCAATTT+TGG | + | chr5.3:3681613-3681632 | None:intergenic | 35.0% |
| ! | TTAGTGAATCTGGAATCATC+AGG | + | chr5.3:3679503-3679522 | None:intergenic | 35.0% |
| ! | TTGCAGTTTCGAGGTTTTTA+GGG | - | chr5.3:3679748-3679767 | MS.gene072762:intron | 35.0% |
| ! | TTGTGACTGGTTAGTGAAAT+TGG | - | chr5.3:3679635-3679654 | MS.gene072762:intron | 35.0% |
| !! | AAATTACTGGCTCAATGTTC+TGG | - | chr5.3:3681054-3681073 | MS.gene072762:intron | 35.0% |
| !! | AAGTTTTTAAGGGAGACTGA+AGG | - | chr5.3:3680862-3680881 | MS.gene072762:CDS | 35.0% |
| !! | AGCTGTTTCTGATGCTAATA+AGG | - | chr5.3:3679269-3679288 | MS.gene072762:intron | 35.0% |
| !! | AGTTTTTAAGGGAGACTGAA+GGG | - | chr5.3:3680863-3680882 | MS.gene072762:CDS | 35.0% |
| !! | TGAAGGCACGATTATCTTTT+GGG | + | chr5.3:3681688-3681707 | None:intergenic | 35.0% |
| !! | TTGATTGATGATGTTTGAGC+AGG | - | chr5.3:3681084-3681103 | MS.gene072762:intron | 35.0% |
| !!! | AGCCAAGCATGTTTGTTTTA+AGG | + | chr5.3:3680920-3680939 | None:intergenic | 35.0% |
| !!! | CTTGGGTAGTTTTTAGTTTG+CGG | - | chr5.3:3681721-3681740 | MS.gene072762:intron | 35.0% |
| AAAATGCAGATGAGGACATG+AGG | - | chr5.3:3682671-3682690 | MS.gene072762:intron | 40.0% | |
| ACCACAACTTTGCACTTATC+AGG | + | chr5.3:3681582-3681601 | None:intergenic | 40.0% | |
| ACCAGCAGAAAATGTTGTTG+TGG | - | chr5.3:3681163-3681182 | MS.gene072762:intron | 40.0% | |
| ACCTGATAAGTGCAAAGTTG+TGG | - | chr5.3:3681578-3681597 | MS.gene072762:CDS | 40.0% | |
| AGTGTTACCATTGATGTTCC+TGG | - | chr5.3:3681341-3681360 | MS.gene072762:intron | 40.0% | |
| ATTGTCACAACCACTTCTTC+TGG | + | chr5.3:3681128-3681147 | None:intergenic | 40.0% | |
| CAAAAGATAATCGTGCCTTC+AGG | - | chr5.3:3681687-3681706 | MS.gene072762:intron | 40.0% | |
| CAAAGTCAAGGACTAAGGAT+TGG | - | chr5.3:3682062-3682081 | MS.gene072762:intron | 40.0% | |
| CAAGTAATGAACTCACCTGA+AGG | + | chr5.3:3681705-3681724 | None:intergenic | 40.0% | |
| CATATCCGTCATCAAAGTCA+AGG | - | chr5.3:3682050-3682069 | MS.gene072762:intron | 40.0% | |
| CATGCTTGGCTACAATTTGT+TGG | - | chr5.3:3680929-3680948 | MS.gene072762:CDS | 40.0% | |
| CTTCAGGTGAGTTCATTACT+TGG | - | chr5.3:3681703-3681722 | MS.gene072762:intron | 40.0% | |
| GAAAGAAGTGGGATCAAAGA+AGG | - | chr5.3:3682875-3682894 | MS.gene072762:CDS | 40.0% | |
| GAACAGTGCTTTCAACTGAT+TGG | - | chr5.3:3682853-3682872 | MS.gene072762:CDS | 40.0% | |
| GACTAAGGATTGGGATAAGT+TGG | - | chr5.3:3682072-3682091 | MS.gene072762:intron | 40.0% | |
| GGAAGCTGAAGTGAAAAAAG+AGG | - | chr5.3:3682093-3682112 | MS.gene072762:intron | 40.0% | |
| GGGGGAAAATCAAATAGCAT+CGG | + | chr5.3:3681218-3681237 | None:intergenic | 40.0% | |
| GTAATCATAACTGTCGGTGT+CGG | + | chr5.3:3681800-3681819 | None:intergenic | 40.0% | |
| GTCATCAAAGTCAAGGACTA+AGG | - | chr5.3:3682057-3682076 | MS.gene072762:intron | 40.0% | |
| GTTACCTTTCCAAACAATCG+AGG | + | chr5.3:3681389-3681408 | None:intergenic | 40.0% | |
| TGCGGTATCAATCTATGAAG+GGG | - | chr5.3:3681739-3681758 | MS.gene072762:intron | 40.0% | |
| TGGTGCAACTGCATTTGTTT+GGG | + | chr5.3:3680562-3680581 | None:intergenic | 40.0% | |
| ! | ATTTGGGTTCATTTGGTGGT+AGG | + | chr5.3:3680476-3680495 | None:intergenic | 40.0% |
| ! | GATGATTTGGGTTCATTTGG+TGG | + | chr5.3:3680480-3680499 | None:intergenic | 40.0% |
| ! | GCAGATGATTTGGGTTCATT+TGG | + | chr5.3:3680483-3680502 | None:intergenic | 40.0% |
| ! | GTTGCAGTTTCGAGGTTTTT+AGG | - | chr5.3:3679747-3679766 | MS.gene072762:intron | 40.0% |
| ! | TCATGTCCTCATCTGCATTT+TGG | + | chr5.3:3682672-3682691 | None:intergenic | 40.0% |
| ! | TCCACAACAACATTTTCTGC+TGG | + | chr5.3:3681167-3681186 | None:intergenic | 40.0% |
| ! | TTTGGGTTCATTTGGTGGTA+GGG | + | chr5.3:3680475-3680494 | None:intergenic | 40.0% |
| !! | CAATCGAGGTTGGTAATTGT+AGG | + | chr5.3:3681375-3681394 | None:intergenic | 40.0% |
| !! | CTGAAGGCACGATTATCTTT+TGG | + | chr5.3:3681689-3681708 | None:intergenic | 40.0% |
| !! | GAAGGCACGATTATCTTTTG+GGG | + | chr5.3:3681687-3681706 | None:intergenic | 40.0% |
| !! | GACATCTCTGGAATATAGCA+AGG | - | chr5.3:3681653-3681672 | MS.gene072762:intron | 40.0% |
| !! | GTTGGTAATTGTAGGCATCT+TGG | + | chr5.3:3681367-3681386 | None:intergenic | 40.0% |
| !! | TTGGCTACAATTTGTTGGTG+TGG | - | chr5.3:3680934-3680953 | MS.gene072762:intron | 40.0% |
| !!! | AACCTGTATTTTGGTCTGAC+TGG | + | chr5.3:3680582-3680601 | None:intergenic | 40.0% |
| !!! | AGGTTTTTAGGGTTTCAGTC+TGG | - | chr5.3:3679759-3679778 | MS.gene072762:intron | 40.0% |
| AACAATGGAGAGCAGGTAAG+GGG | + | chr5.3:3681237-3681256 | None:intergenic | 45.0% | |
| AACAGACGCAGCAGATGATT+TGG | + | chr5.3:3680493-3680512 | None:intergenic | 45.0% | |
| AAGGCATGGAGGTGAAGAAA+TGG | - | chr5.3:3682916-3682935 | MS.gene072762:CDS | 45.0% | |
| ACAGACACAGACACAGACAT+TGG | + | chr5.3:3681875-3681894 | None:intergenic | 45.0% | |
| ACAGACGCAGCAGATGATTT+GGG | + | chr5.3:3680492-3680511 | None:intergenic | 45.0% | |
| AGAACAATGGAGAGCAGGTA+AGG | + | chr5.3:3681239-3681258 | None:intergenic | 45.0% | |
| AGAAGTGGGATCAAAGAAGG+TGG | - | chr5.3:3682878-3682897 | MS.gene072762:CDS | 45.0% | |
| AGGCATGGAGGTGAAGAAAT+GGG | - | chr5.3:3682917-3682936 | MS.gene072762:CDS | 45.0% | |
| AGGGAGACTGAAGGGAAAAA+AGG | - | chr5.3:3680871-3680890 | MS.gene072762:CDS | 45.0% | |
| ATCTTGGCCAGGAACATCAA+TGG | + | chr5.3:3681351-3681370 | None:intergenic | 45.0% | |
| CACCAGTCAGACCAAAATAC+AGG | - | chr5.3:3680577-3680596 | MS.gene072762:intron | 45.0% | |
| CCAACCTCGATTGTTTGGAA+AGG | - | chr5.3:3681382-3681401 | MS.gene072762:intron | 45.0% | |
| CCTTTCCAAACAATCGAGGT+TGG | + | chr5.3:3681385-3681404 | None:intergenic | 45.0% | |
| CTGGTGCAACTGCATTTGTT+TGG | + | chr5.3:3680563-3680582 | None:intergenic | 45.0% | |
| CTGTTGTAGTTGCAGTTTCG+AGG | - | chr5.3:3679739-3679758 | MS.gene072762:intron | 45.0% | |
| GAACAATGGAGAGCAGGTAA+GGG | + | chr5.3:3681238-3681257 | None:intergenic | 45.0% | |
| GATTCATTGCCAGCAACAAG+TGG | - | chr5.3:3682369-3682388 | MS.gene072762:intron | 45.0% | |
| GGGAGACTGAAGGGAAAAAA+GGG | - | chr5.3:3680872-3680891 | MS.gene072762:CDS | 45.0% | |
| TAAGGAGAACAATGGAGAGC+AGG | + | chr5.3:3681244-3681263 | None:intergenic | 45.0% | |
| TAATTGTAGGCATCTTGGCC+AGG | + | chr5.3:3681362-3681381 | None:intergenic | 45.0% | |
| TTACCAGAAGCCAGAAGAAG+TGG | - | chr5.3:3681115-3681134 | MS.gene072762:intron | 45.0% | |
| !! | GACTTTGATGACGGATATGC+AGG | + | chr5.3:3682049-3682068 | None:intergenic | 45.0% |
| !!! | CAGAATGGTTGCTTTTGCCA+TGG | - | chr5.3:3681918-3681937 | MS.gene072762:intron | 45.0% |
| !! | AAATAAATAAAAACATAAAT+AGG | + | chr5.3:3682133-3682152 | None:intergenic | 5.0% |
| !! | AATAAATAAAAACATAAATA+GGG | + | chr5.3:3682132-3682151 | None:intergenic | 5.0% |
| !!! | ATTTATGTTTTTATTTATTT+AGG | - | chr5.3:3682133-3682152 | MS.gene072762:intron | 5.0% |
| !!! | TTTATGTTTTTATTTATTTA+GGG | - | chr5.3:3682134-3682153 | MS.gene072762:intron | 5.0% |
| !!! | TTTTTGTTTTATTTAAATTT+AGG | - | chr5.3:3679706-3679725 | MS.gene072762:intron | 5.0% |
| ACAATGGAGAGCAGGTAAGG+GGG | + | chr5.3:3681236-3681255 | None:intergenic | 50.0% | |
| ACATCGCAGCTGGAGTCAAA+TGG | - | chr5.3:3682831-3682850 | MS.gene072762:CDS | 50.0% | |
| ATCAGGCTCGCATATCATGC+AGG | + | chr5.3:3680410-3680429 | None:intergenic | 50.0% | |
| ATCTATGAAGGGGACACTCC+CGG | - | chr5.3:3681749-3681768 | MS.gene072762:intron | 50.0% | |
| ATTGTGGTGCTCTGCCTTTC+AGG | - | chr5.3:3682588-3682607 | MS.gene072762:CDS | 50.0% | |
| GTGGGATCAAAGAAGGTGGA+AGG | - | chr5.3:3682882-3682901 | MS.gene072762:CDS | 50.0% | |
| TGTCAACGCTTCATTGCTGC+TGG | - | chr5.3:3679536-3679555 | MS.gene072762:intron | 50.0% | |
| TTCTTCACCTCCATGCCTTC+CGG | + | chr5.3:3682915-3682934 | None:intergenic | 50.0% | |
| !! | ATAACTGTCGGTGTCGGACA+CGG | + | chr5.3:3681794-3681813 | None:intergenic | 50.0% |
| !! | CAACCACTTCTTCTGGCTTC+TGG | + | chr5.3:3681121-3681140 | None:intergenic | 50.0% |
| !!! | GCGATTGGTTTTTAGGGCAC+TGG | - | chr5.3:3680025-3680044 | MS.gene072762:intron | 50.0% |
| ACACCGGGACACACCTAATC+CGG | + | chr5.3:3681771-3681790 | None:intergenic | 55.0% | |
| ATCGGCGAAGAGATTGGCGT+TGG | + | chr5.3:3679211-3679230 | None:intergenic | 55.0% | |
| CTGCGATGTCACGCAGTTCA+AGG | + | chr5.3:3682820-3682839 | None:intergenic | 55.0% | |
| GAAGGTGGAAGGAAGTCCTC+CGG | - | chr5.3:3682893-3682912 | MS.gene072762:CDS | 55.0% | |
| TGCTCGATCGGCGAAGAGAT+TGG | + | chr5.3:3679217-3679236 | None:intergenic | 55.0% | |
| ! | AGTCTGGCGTCCAGGTTTTC+AGG | - | chr5.3:3679775-3679794 | MS.gene072762:intron | 55.0% |
| ! | GTCTGGCGTCCAGGTTTTCA+GGG | - | chr5.3:3679776-3679795 | MS.gene072762:intron | 55.0% |
| ! | TTGGTGGTAGGGTGCTCGTA+AGG | + | chr5.3:3680464-3680483 | None:intergenic | 55.0% |
| !! | GCGAAGAGATTGGCGTTGGT+GGG | + | chr5.3:3679207-3679226 | None:intergenic | 55.0% |
| AGGAAGTCCTCCGGAAGGCA+TGG | - | chr5.3:3682902-3682921 | MS.gene072762:CDS | 60.0% | |
| AGGGTTTCAGTCTGGCGTCC+AGG | - | chr5.3:3679767-3679786 | MS.gene072762:intron | 60.0% | |
| CACCGGGACACACCTAATCC+GGG | + | chr5.3:3681770-3681789 | None:intergenic | 60.0% | |
| GAACTGCGTGACATCGCAGC+TGG | - | chr5.3:3682821-3682840 | MS.gene072762:CDS | 60.0% | |
| GAAGGGGACACTCCCGGATT+AGG | - | chr5.3:3681755-3681774 | MS.gene072762:intron | 60.0% | |
| GTGGAAGGAAGTCCTCCGGA+AGG | - | chr5.3:3682897-3682916 | MS.gene072762:CDS | 60.0% | |
| TTCACCTCCATGCCTTCCGG+AGG | + | chr5.3:3682912-3682931 | None:intergenic | 60.0% | |
| ! | AAGTCCTCCGGAAGGCATGG+AGG | - | chr5.3:3682905-3682924 | MS.gene072762:CDS | 60.0% |
| ! | CTCCCGGATTAGGTGTGTCC+CGG | - | chr5.3:3681765-3681784 | MS.gene072762:intron | 60.0% |
| ! | GGCGAAGAGATTGGCGTTGG+TGG | + | chr5.3:3679208-3679227 | None:intergenic | 60.0% |
| !! | TCGGTGTCGGACACGGACAC+CGG | + | chr5.3:3681787-3681806 | None:intergenic | 65.0% |
| ! | CGGTGTCGGACACGGACACC+GGG | + | chr5.3:3681786-3681805 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 3679108 | 3682947 | 3679108 | ID=MS.gene072762 |
| chr5.3 | mRNA | 3679108 | 3682947 | 3679108 | ID=MS.gene072762.t1;Parent=MS.gene072762 |
| chr5.3 | exon | 3682718 | 3682947 | 3682718 | ID=MS.gene072762.t1.exon1;Parent=MS.gene072762.t1 |
| chr5.3 | CDS | 3682718 | 3682947 | 3682718 | ID=cds.MS.gene072762.t1;Parent=MS.gene072762.t1 |
| chr5.3 | exon | 3682498 | 3682625 | 3682498 | ID=MS.gene072762.t1.exon2;Parent=MS.gene072762.t1 |
| chr5.3 | CDS | 3682498 | 3682625 | 3682498 | ID=cds.MS.gene072762.t1;Parent=MS.gene072762.t1 |
| chr5.3 | exon | 3681457 | 3681607 | 3681457 | ID=MS.gene072762.t1.exon3;Parent=MS.gene072762.t1 |
| chr5.3 | CDS | 3681457 | 3681607 | 3681457 | ID=cds.MS.gene072762.t1;Parent=MS.gene072762.t1 |
| chr5.3 | exon | 3680853 | 3680949 | 3680853 | ID=MS.gene072762.t1.exon4;Parent=MS.gene072762.t1 |
| chr5.3 | CDS | 3680853 | 3680949 | 3680853 | ID=cds.MS.gene072762.t1;Parent=MS.gene072762.t1 |
| chr5.3 | exon | 3680652 | 3680717 | 3680652 | ID=MS.gene072762.t1.exon5;Parent=MS.gene072762.t1 |
| chr5.3 | CDS | 3680652 | 3680717 | 3680652 | ID=cds.MS.gene072762.t1;Parent=MS.gene072762.t1 |
| chr5.3 | exon | 3680347 | 3680482 | 3680347 | ID=MS.gene072762.t1.exon6;Parent=MS.gene072762.t1 |
| chr5.3 | CDS | 3680347 | 3680482 | 3680347 | ID=cds.MS.gene072762.t1;Parent=MS.gene072762.t1 |
| chr5.3 | exon | 3679941 | 3680023 | 3679941 | ID=MS.gene072762.t1.exon7;Parent=MS.gene072762.t1 |
| chr5.3 | CDS | 3679941 | 3680023 | 3679941 | ID=cds.MS.gene072762.t1;Parent=MS.gene072762.t1 |
| chr5.3 | exon | 3679341 | 3679445 | 3679341 | ID=MS.gene072762.t1.exon8;Parent=MS.gene072762.t1 |
| chr5.3 | CDS | 3679341 | 3679445 | 3679341 | ID=cds.MS.gene072762.t1;Parent=MS.gene072762.t1 |
| chr5.3 | exon | 3679108 | 3679215 | 3679108 | ID=MS.gene072762.t1.exon9;Parent=MS.gene072762.t1 |
| chr5.3 | CDS | 3679108 | 3679215 | 3679108 | ID=cds.MS.gene072762.t1;Parent=MS.gene072762.t1 |
| Gene Sequence |
| Protein sequence |
