Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21632.t1 | XP_003611052.1 | 96 | 371 | 8 | 1 | 3 | 366 | 4 | 374 | 6.50E-195 | 689.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21632.t1 | Q0JL44 | 64.2 | 366 | 123 | 3 | 3 | 366 | 8 | 367 | 1.1e-126 | 454.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21632.t1 | G7KBZ4 | 96.0 | 371 | 8 | 1 | 3 | 366 | 4 | 374 | 4.7e-195 | 689.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene21632 | 0.830316 | 3.15E-55 | -1.69E-46 |
| MS.gene04918 | MS.gene21632 | 0.8275 | 1.51E-54 | -1.69E-46 |
| MS.gene04919 | MS.gene21632 | 0.813239 | 2.83E-51 | -1.69E-46 |
| MS.gene04920 | MS.gene21632 | 0.83304 | 6.70E-56 | -1.69E-46 |
| MS.gene049283 | MS.gene21632 | 0.832766 | 7.84E-56 | -1.69E-46 |
| MS.gene049368 | MS.gene21632 | 0.83376 | 4.43E-56 | -1.69E-46 |
| MS.gene049499 | MS.gene21632 | 0.813981 | 1.94E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene21632 | 0.814772 | 1.30E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene21632 | 0.852957 | 3.28E-61 | -1.69E-46 |
| MS.gene050213 | MS.gene21632 | 0.829954 | 3.85E-55 | -1.69E-46 |
| MS.gene050551 | MS.gene21632 | 0.835098 | 2.04E-56 | -1.69E-46 |
| MS.gene050646 | MS.gene21632 | 0.822935 | 1.81E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene21632 | 0.833014 | 6.80E-56 | -1.69E-46 |
| MS.gene051003 | MS.gene21632 | 0.808719 | 2.70E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene21632 | 0.814932 | 1.20E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene21632 | 0.806084 | 9.77E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene21632 | 0.803487 | 3.41E-49 | -1.69E-46 |
| MS.gene051676 | MS.gene21632 | 0.805017 | 1.64E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene21632 | 0.805914 | 1.06E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene21632 | 0.820073 | 8.32E-53 | -1.69E-46 |
| MS.gene052016 | MS.gene21632 | 0.825747 | 3.96E-54 | -1.69E-46 |
| MS.gene052118 | MS.gene21632 | 0.820645 | 6.15E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene21632 | 0.82025 | 7.57E-53 | -1.69E-46 |
| MS.gene052342 | MS.gene21632 | 0.813334 | 2.70E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene21632 | 0.837983 | 3.77E-57 | -1.69E-46 |
| MS.gene052518 | MS.gene21632 | 0.804666 | 1.94E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene21632 | 0.830339 | 3.11E-55 | -1.69E-46 |
| MS.gene053079 | MS.gene21632 | 0.849513 | 3.08E-60 | -1.69E-46 |
| MS.gene053122 | MS.gene21632 | 0.805299 | 1.43E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene21632 | 0.805712 | 1.17E-49 | -1.69E-46 |
| MS.gene05315 | MS.gene21632 | 0.810444 | 1.15E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene21632 | 0.815915 | 7.24E-52 | -1.69E-46 |
| MS.gene054178 | MS.gene21632 | 0.825886 | 3.67E-54 | -1.69E-46 |
| MS.gene05458 | MS.gene21632 | 0.857321 | 1.77E-62 | -1.69E-46 |
| MS.gene054641 | MS.gene21632 | 0.806865 | 6.68E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene21632 | 0.804903 | 1.73E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene21632 | 0.804289 | 2.32E-49 | -1.69E-46 |
| MS.gene054893 | MS.gene21632 | 0.807724 | 4.40E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene21632 | 0.864509 | 1.16E-64 | -1.69E-46 |
| MS.gene056045 | MS.gene21632 | 0.84022 | 9.91E-58 | -1.69E-46 |
| MS.gene056181 | MS.gene21632 | 0.827436 | 1.57E-54 | -1.69E-46 |
| MS.gene056308 | MS.gene21632 | 0.818842 | 1.59E-52 | -1.69E-46 |
| MS.gene056507 | MS.gene21632 | 0.815808 | 7.65E-52 | -1.69E-46 |
| MS.gene056831 | MS.gene21632 | 0.834657 | 2.64E-56 | -1.69E-46 |
| MS.gene05686 | MS.gene21632 | 0.840928 | 6.47E-58 | -1.69E-46 |
| MS.gene056973 | MS.gene21632 | 0.825723 | 4.01E-54 | -1.69E-46 |
| MS.gene057102 | MS.gene21632 | 0.81756 | 3.10E-52 | -1.69E-46 |
| MS.gene057294 | MS.gene21632 | 0.802877 | 4.55E-49 | -1.69E-46 |
| MS.gene057890 | MS.gene21632 | -0.804585 | 2.01E-49 | -1.69E-46 |
| MS.gene057893 | MS.gene21632 | -0.800971 | 1.12E-48 | -1.69E-46 |
| MS.gene057919 | MS.gene21632 | 0.811162 | 8.04E-51 | -1.69E-46 |
| MS.gene058292 | MS.gene21632 | 0.803447 | 3.47E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene21632 | 0.802408 | 5.69E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene21632 | 0.842113 | 3.15E-58 | -1.69E-46 |
| MS.gene059170 | MS.gene21632 | 0.850385 | 1.76E-60 | -1.69E-46 |
| MS.gene059625 | MS.gene21632 | 0.804364 | 2.24E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene21632 | 0.845467 | 3.99E-59 | -1.69E-46 |
| MS.gene060435 | MS.gene21632 | 0.810692 | 1.02E-50 | -1.69E-46 |
| MS.gene060522 | MS.gene21632 | 0.811773 | 5.92E-51 | -1.69E-46 |
| MS.gene060785 | MS.gene21632 | 0.800673 | 1.29E-48 | -1.69E-46 |
| MS.gene060932 | MS.gene21632 | 0.804183 | 2.44E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene21632 | 0.862487 | 4.89E-64 | -1.69E-46 |
| MS.gene060935 | MS.gene21632 | 0.829404 | 5.25E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene21632 | 0.845494 | 3.92E-59 | -1.69E-46 |
| MS.gene061100 | MS.gene21632 | 0.881561 | 2.17E-70 | -1.69E-46 |
| MS.gene061160 | MS.gene21632 | 0.841147 | 5.67E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95813 | MS.gene21632 | PPI |
| MS.gene21632 | MS.gene81472 | PPI |
| MS.gene21632 | MS.gene83993 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21632.t1 | MTR_5g009930 | 95.957 | 371 | 8 | 1 | 3 | 366 | 4 | 374 | 0.0 | 729 |
| MS.gene21632.t1 | MTR_5g009930 | 95.017 | 301 | 8 | 1 | 3 | 296 | 4 | 304 | 0.0 | 584 |
| MS.gene21632.t1 | MTR_6g053290 | 62.534 | 371 | 115 | 5 | 3 | 366 | 4 | 357 | 1.07e-162 | 459 |
| MS.gene21632.t1 | MTR_6g053290 | 59.640 | 389 | 115 | 6 | 3 | 366 | 4 | 375 | 1.43e-157 | 447 |
| MS.gene21632.t1 | MTR_5g012030 | 38.000 | 100 | 62 | 0 | 3 | 102 | 4 | 103 | 1.77e-15 | 78.2 |
| MS.gene21632.t1 | MTR_5g012030 | 29.091 | 110 | 78 | 0 | 7 | 116 | 398 | 507 | 3.97e-11 | 64.7 |
| MS.gene21632.t1 | MTR_3g452710 | 33.929 | 112 | 74 | 0 | 3 | 114 | 13 | 124 | 5.05e-15 | 76.6 |
| MS.gene21632.t1 | MTR_3g452710 | 33.929 | 112 | 74 | 0 | 3 | 114 | 13 | 124 | 5.67e-15 | 76.3 |
| MS.gene21632.t1 | MTR_6g060735 | 43.000 | 100 | 39 | 4 | 206 | 298 | 59 | 147 | 1.14e-13 | 68.6 |
| MS.gene21632.t1 | MTR_7g115280 | 30.909 | 110 | 76 | 0 | 3 | 112 | 337 | 446 | 9.26e-12 | 66.6 |
| MS.gene21632.t1 | MTR_6g060740 | 46.154 | 78 | 31 | 2 | 221 | 296 | 4 | 72 | 2.00e-11 | 60.1 |
| MS.gene21632.t1 | MTR_1g041435 | 26.718 | 131 | 92 | 1 | 2 | 128 | 12 | 142 | 6.40e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21632.t1 | AT4G23570 | 65.301 | 366 | 104 | 7 | 3 | 365 | 4 | 349 | 5.59e-155 | 440 |
| MS.gene21632.t1 | AT4G23570 | 65.301 | 366 | 104 | 7 | 3 | 365 | 4 | 349 | 5.59e-155 | 440 |
| MS.gene21632.t1 | AT4G11260 | 63.115 | 366 | 122 | 4 | 3 | 366 | 4 | 358 | 9.31e-155 | 439 |
| MS.gene21632.t1 | AT4G23570 | 65.123 | 367 | 104 | 8 | 3 | 365 | 4 | 350 | 1.91e-153 | 436 |
| MS.gene21632.t1 | AT2G42810 | 29.487 | 156 | 109 | 1 | 3 | 158 | 15 | 169 | 5.92e-16 | 79.7 |
| MS.gene21632.t1 | AT2G42810 | 29.487 | 156 | 109 | 1 | 3 | 158 | 15 | 169 | 6.65e-16 | 79.3 |
| MS.gene21632.t1 | AT1G04190 | 34.091 | 132 | 77 | 2 | 4 | 128 | 18 | 146 | 1.29e-15 | 77.4 |
| MS.gene21632.t1 | AT2G42810 | 31.690 | 142 | 95 | 2 | 3 | 144 | 15 | 154 | 3.30e-15 | 77.0 |
| MS.gene21632.t1 | AT2G42810 | 31.690 | 142 | 95 | 2 | 3 | 144 | 15 | 154 | 3.30e-15 | 77.0 |
| MS.gene21632.t1 | AT2G42810 | 31.690 | 142 | 95 | 2 | 3 | 144 | 15 | 154 | 3.30e-15 | 77.0 |
| MS.gene21632.t1 | AT4G12400 | 33.929 | 112 | 74 | 0 | 3 | 114 | 4 | 115 | 3.18e-14 | 74.3 |
| MS.gene21632.t1 | AT4G12400 | 31.858 | 113 | 76 | 1 | 1 | 112 | 368 | 480 | 6.45e-13 | 70.1 |
| MS.gene21632.t1 | AT4G12400 | 33.929 | 112 | 74 | 0 | 3 | 114 | 4 | 115 | 3.56e-14 | 74.3 |
| MS.gene21632.t1 | AT4G12400 | 31.858 | 113 | 76 | 1 | 1 | 112 | 368 | 480 | 6.70e-13 | 70.1 |
| MS.gene21632.t1 | AT1G62740 | 37.755 | 98 | 61 | 0 | 3 | 100 | 4 | 101 | 1.04e-13 | 72.8 |
| MS.gene21632.t1 | AT1G62740 | 30.252 | 119 | 83 | 0 | 7 | 125 | 388 | 506 | 4.34e-12 | 67.8 |
| MS.gene21632.t1 | AT3G04710 | 34.737 | 95 | 62 | 0 | 7 | 101 | 558 | 652 | 2.66e-13 | 71.6 |
| MS.gene21632.t1 | AT3G04710 | 31.429 | 105 | 72 | 0 | 7 | 111 | 334 | 438 | 4.14e-13 | 70.9 |
| MS.gene21632.t1 | AT3G04710 | 31.429 | 105 | 72 | 0 | 7 | 111 | 333 | 437 | 4.25e-13 | 70.5 |
| MS.gene21632.t1 | AT1G12270 | 35.714 | 98 | 63 | 0 | 3 | 100 | 4 | 101 | 5.30e-13 | 70.5 |
| MS.gene21632.t1 | AT1G12270 | 30.252 | 119 | 83 | 0 | 7 | 125 | 389 | 507 | 8.67e-12 | 67.0 |
| MS.gene21632.t1 | AT4G22670 | 37.209 | 86 | 54 | 0 | 3 | 88 | 125 | 210 | 8.73e-11 | 63.5 |
Find 88 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCAGACGAATTTCAATTT+TGG | 0.202093 | 5.2:-3405438 | None:intergenic |
| TAAAATTCAAACCTGTATTT+TGG | 0.207831 | 5.2:-3404415 | None:intergenic |
| AGATAAGCTTTAGACAAATT+AGG | 0.217599 | 5.2:-3403136 | None:intergenic |
| TCATGTCCTCATCTGCATTT+TGG | 0.223925 | 5.2:-3406511 | None:intergenic |
| TGCATTTGTTTGGGATTCTT+TGG | 0.233284 | 5.2:-3404377 | None:intergenic |
| CTGAAGGCACGATTATCTTT+TGG | 0.246738 | 5.2:-3405514 | None:intergenic |
| ACCACAACTTTGCACTTATC+AGG | 0.255504 | 5.2:-3405407 | None:intergenic |
| TTGAATCAAATTAGTGAATC+TGG | 0.262555 | 5.2:-3403345 | None:intergenic |
| AATTACCAACCTCGATTGTT+TGG | 0.273321 | 5.2:+3405204 | MS.gene21632:CDS |
| GATAAGCTTTAGACAAATTA+GGG | 0.273607 | 5.2:-3403135 | None:intergenic |
| CTGGTGCAACTGCATTTGTT+TGG | 0.277385 | 5.2:-3404387 | None:intergenic |
| CAAAAGCTGAAGCAATTAAT+TGG | 0.291230 | 5.2:+3405459 | MS.gene21632:CDS |
| CAACCACTTCTTCTGGCTTC+TGG | 0.307212 | 5.2:-3404945 | None:intergenic |
| AACAGACGCAGCAGATGATT+TGG | 0.309310 | 5.2:-3404317 | None:intergenic |
| AGCTGTTTCTGATGCTAATA+AGG | 0.317013 | 5.2:+3403099 | MS.gene21632:CDS |
| ATTGTCACAACCACTTCTTC+TGG | 0.326332 | 5.2:-3404952 | None:intergenic |
| TTCTTCACCTCCATGCCTTC+CGG | 0.334065 | 5.2:-3406754 | None:intergenic |
| CATCACTCTTATCACACATA+TGG | 0.343614 | 5.2:-3404348 | None:intergenic |
| GCAGATGATTTGGGTTCATT+TGG | 0.361318 | 5.2:-3404307 | None:intergenic |
| TGGTGCAACTGCATTTGTTT+GGG | 0.369271 | 5.2:-3404386 | None:intergenic |
| GAACAGTGCTTTCAACTGAT+TGG | 0.383406 | 5.2:+3406695 | MS.gene21632:CDS |
| AGTGTTACCATTGATGTTCC+TGG | 0.384771 | 5.2:+3405168 | MS.gene21632:CDS |
| TGCTAAGATTGCACTTGAAA+AGG | 0.395581 | 5.2:+3403298 | MS.gene21632:CDS |
| ATTTGGGTTCATTTGGTGGT+AGG | 0.397979 | 5.2:-3404300 | None:intergenic |
| GCTAAGATTGCACTTGAAAA+GGG | 0.398330 | 5.2:+3403299 | MS.gene21632:CDS |
| TGGGATCGATTTCGATGGCT+TGG | 0.399437 | 5.2:-3403015 | None:intergenic |
| GACTAAGGATTGGGATAAGT+TGG | 0.404465 | 5.2:+3405914 | MS.gene21632:CDS |
| CAAATTAGGGTTCAATTGAA+TGG | 0.412131 | 5.2:-3403122 | None:intergenic |
| ACAGACGCAGCAGATGATTT+GGG | 0.413414 | 5.2:-3404316 | None:intergenic |
| CAAAAGATAATCGTGCCTTC+AGG | 0.416666 | 5.2:+3405515 | MS.gene21632:CDS |
| AGCAATTAATTGGACATCTC+TGG | 0.420967 | 5.2:+3405469 | MS.gene21632:CDS |
| GTTGTGACAATATTTGCAAA+AGG | 0.432373 | 5.2:+3404964 | MS.gene21632:CDS |
| GACTTTGATGACGGATATGC+AGG | 0.432961 | 5.2:-3405888 | None:intergenic |
| AAGGCATGGAGGTGAAGAAA+TGG | 0.447230 | 5.2:+3406758 | MS.gene21632:CDS |
| GGGATCGATTTCGATGGCTT+GGG | 0.456570 | 5.2:-3403014 | None:intergenic |
| GAGAAAGAAGAAAAGCTTGA+TGG | 0.457639 | 5.2:+3406452 | MS.gene21632:CDS |
| TTTGGGTTCATTTGGTGGTA+GGG | 0.457656 | 5.2:-3404299 | None:intergenic |
| GAAAATGTTGTTGTGGACTT+TGG | 0.457793 | 5.2:+3404997 | MS.gene21632:CDS |
| TTCAACTGATTGGAAAGAAG+TGG | 0.459056 | 5.2:+3406705 | MS.gene21632:CDS |
| CAAAGTCAAGGACTAAGGAT+TGG | 0.459819 | 5.2:+3405904 | MS.gene21632:CDS |
| AACCAAAATTGAAATTCGTC+TGG | 0.463865 | 5.2:+3405436 | MS.gene21632:CDS |
| GTTGGTAATTGTAGGCATCT+TGG | 0.464918 | 5.2:-3405191 | None:intergenic |
| GGCGAAGAGATTGGCGTTGG+TGG | 0.466384 | 5.2:-3403035 | None:intergenic |
| CAATCGAGGTTGGTAATTGT+AGG | 0.468328 | 5.2:-3405199 | None:intergenic |
| TGCTCGATCGGCGAAGAGAT+TGG | 0.468339 | 5.2:-3403044 | None:intergenic |
| ATCACTCTTATCACACATAT+GGG | 0.469660 | 5.2:-3404347 | None:intergenic |
| GATGATTTGGGTTCATTTGG+TGG | 0.474276 | 5.2:-3404304 | None:intergenic |
| CACCAGTCAGACCAAAATAC+AGG | 0.477363 | 5.2:+3404404 | MS.gene21632:CDS |
| AAAGTCAAGGACTAAGGATT+GGG | 0.477566 | 5.2:+3405905 | MS.gene21632:CDS |
| ACATCGCAGCTGGAGTCAAA+TGG | 0.493337 | 5.2:+3406673 | MS.gene21632:intron |
| TAATTGTAGGCATCTTGGCC+AGG | 0.499111 | 5.2:-3405186 | None:intergenic |
| GTCATCAAAGTCAAGGACTA+AGG | 0.505114 | 5.2:+3405899 | MS.gene21632:CDS |
| TTGTGACAATATTTGCAAAA+GGG | 0.517563 | 5.2:+3404965 | MS.gene21632:CDS |
| CTAAAGCTTATCTTCGCAAA+GGG | 0.517803 | 5.2:+3403146 | MS.gene21632:CDS |
| AGGCATGGAGGTGAAGAAAT+GGG | 0.525573 | 5.2:+3406759 | MS.gene21632:CDS |
| GTGGGATCAAAGAAGGTGGA+AGG | 0.527275 | 5.2:+3406724 | MS.gene21632:CDS |
| ACCTGATAAGTGCAAAGTTG+TGG | 0.535317 | 5.2:+3405406 | MS.gene21632:CDS |
| TCTAAAGCTTATCTTCGCAA+AGG | 0.536711 | 5.2:+3403145 | MS.gene21632:CDS |
| TGTCAACGCTTCATTGCTGC+TGG | 0.540905 | 5.2:+3403371 | MS.gene21632:CDS |
| TTGGTGGTAGGGTGCTCGTA+AGG | 0.545824 | 5.2:-3404288 | None:intergenic |
| TTAGTCCTTGACTTTGATGA+CGG | 0.547734 | 5.2:-3405897 | None:intergenic |
| GAAAGAAGTGGGATCAAAGA+AGG | 0.549782 | 5.2:+3406717 | MS.gene21632:CDS |
| AGAAGTGGGATCAAAGAAGG+TGG | 0.550429 | 5.2:+3406720 | MS.gene21632:CDS |
| TCAACTGATTGGAAAGAAGT+GGG | 0.552602 | 5.2:+3406706 | MS.gene21632:CDS |
| AGGAAGTCCTCCGGAAGGCA+TGG | 0.553293 | 5.2:+3406744 | MS.gene21632:CDS |
| GATATAAGATTGTGCTCGAT+CGG | 0.556317 | 5.2:-3403056 | None:intergenic |
| CCTTTCCAAACAATCGAGGT+TGG | 0.558787 | 5.2:-3405209 | None:intergenic |
| TTCACCTCCATGCCTTCCGG+AGG | 0.562191 | 5.2:-3406751 | None:intergenic |
| ATCGGCGAAGAGATTGGCGT+TGG | 0.564003 | 5.2:-3403038 | None:intergenic |
| TTAGTGAATCTGGAATCATC+AGG | 0.564312 | 5.2:-3403335 | None:intergenic |
| TTACCAGAAGCCAGAAGAAG+TGG | 0.567554 | 5.2:+3404942 | MS.gene21632:CDS |
| ATCTTGGCCAGGAACATCAA+TGG | 0.567721 | 5.2:-3405175 | None:intergenic |
| GTTGGTGGGATCGATTTCGA+TGG | 0.572118 | 5.2:-3403020 | None:intergenic |
| CCAACCTCGATTGTTTGGAA+AGG | 0.572336 | 5.2:+3405209 | MS.gene21632:CDS |
| GCGAAGAGATTGGCGTTGGT+GGG | 0.574698 | 5.2:-3403034 | None:intergenic |
| GAAGGTGGAAGGAAGTCCTC+CGG | 0.593651 | 5.2:+3406735 | MS.gene21632:CDS |
| GACATCTCTGGAATATAGCA+AGG | 0.594841 | 5.2:+3405481 | MS.gene21632:CDS |
| CTAAGATTGCACTTGAAAAG+GGG | 0.595811 | 5.2:+3403300 | MS.gene21632:CDS |
| ACCAGCAGAAAATGTTGTTG+TGG | 0.599108 | 5.2:+3404990 | MS.gene21632:CDS |
| TTTCTGCAGTTCAATCTGAA+AGG | 0.605938 | 5.2:+3405865 | MS.gene21632:intron |
| CATATCCGTCATCAAAGTCA+AGG | 0.618238 | 5.2:+3405892 | MS.gene21632:CDS |
| GTTACCTTTCCAAACAATCG+AGG | 0.633356 | 5.2:-3405213 | None:intergenic |
| TAAGATTGCACTTGAAAAGG+GGG | 0.634057 | 5.2:+3403301 | MS.gene21632:CDS |
| TATTTACCAAAATGCAGATG+AGG | 0.640349 | 5.2:+3406505 | MS.gene21632:CDS |
| AAAATGCAGATGAGGACATG+AGG | 0.646902 | 5.2:+3406513 | MS.gene21632:CDS |
| GTGGAAGGAAGTCCTCCGGA+AGG | 0.675797 | 5.2:+3406739 | MS.gene21632:CDS |
| AAGTCCTCCGGAAGGCATGG+AGG | 0.703156 | 5.2:+3406747 | MS.gene21632:CDS |
| GGCTTGGGAGTAGAAATCAA+CGG | 0.721412 | 5.2:-3402999 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAGTTATACAATAATA+AGG | - | chr5.2:3404619-3404638 | None:intergenic | 10.0% |
| !!! | AATATTTATGTTTTGTTTTT+AGG | + | chr5.2:3403195-3403214 | MS.gene21632:intron | 10.0% |
| !!! | ATATTTATGTTTTGTTTTTA+GGG | + | chr5.2:3403196-3403215 | MS.gene21632:intron | 10.0% |
| !!! | GATTTGATTTATTTTTATTT+TGG | + | chr5.2:3402793-3402812 | MS.gene21632:intron | 10.0% |
| !!! | GATTTTAATTATACTATTAT+TGG | + | chr5.2:3406579-3406598 | MS.gene21632:intron | 10.0% |
| !!! | TAATTTTCTCTAATTATTAT+CGG | + | chr5.2:3405661-3405680 | MS.gene21632:intron | 10.0% |
| !!! | TTATCCTTTTTTTTTTTTAA+GGG | - | chr5.2:3402725-3402744 | None:intergenic | 10.0% |
| !!! | TTATGTTTTTATTTATTTAG+GGG | + | chr5.2:3405977-3405996 | MS.gene21632:intron | 10.0% |
| !!! | TTTATCCTTTTTTTTTTTTA+AGG | - | chr5.2:3402726-3402745 | None:intergenic | 10.0% |
| !!! | TTTTAATCAAAAGTTTTTAA+GGG | + | chr5.2:3404679-3404698 | MS.gene21632:intron | 10.0% |
| !! | AAAAAATTATGTATGCAAAT+TGG | + | chr5.2:3406122-3406141 | MS.gene21632:intron | 15.0% |
| !! | ACAATTTCAATTTAAAAACT+TGG | + | chr5.2:3403697-3403716 | MS.gene21632:intron | 15.0% |
| !! | AGTGATATACATATAAAATA+AGG | - | chr5.2:3405089-3405108 | None:intergenic | 15.0% |
| !! | TAATTGTTGAATGAATAAAT+AGG | + | chr5.2:3405788-3405807 | MS.gene21632:intron | 15.0% |
| !! | TAGATATTAAAAAAATTTGC+AGG | - | chr5.2:3403661-3403680 | None:intergenic | 15.0% |
| !! | TTAAAAGTAAAGAAAATAGA+AGG | + | chr5.2:3402754-3402773 | MS.gene21632:intron | 15.0% |
| !!! | ACTTTTGATTAAAAGTTTTT+CGG | - | chr5.2:3404673-3404692 | None:intergenic | 15.0% |
| !!! | CTTTTAATCAAAAGTTTTTA+AGG | + | chr5.2:3404678-3404697 | MS.gene21632:intron | 15.0% |
| !!! | TATCCTTTTTTTTTTTTAAG+GGG | - | chr5.2:3402724-3402743 | None:intergenic | 15.0% |
| !!! | TATTCATGTATTCAAAATTT+TGG | - | chr5.2:3406347-3406366 | None:intergenic | 15.0% |
| !!! | TGAATTTGTTTTATATTTGT+AGG | + | chr5.2:3403243-3403262 | MS.gene21632:intron | 15.0% |
| !!! | TGATTTTTGTAAGTTTTATT+TGG | + | chr5.2:3403430-3403449 | MS.gene21632:intron | 15.0% |
| !!! | TGCAAATTTTTTTAATATCT+AGG | + | chr5.2:3403660-3403679 | MS.gene21632:intron | 15.0% |
| !!! | TTATTGTCATTTTATGAATA+CGG | + | chr5.2:3406152-3406171 | MS.gene21632:intron | 15.0% |
| !! | AGATGAAATTAACATACAAT+TGG | - | chr5.2:3406371-3406390 | None:intergenic | 20.0% |
| !! | ATATAAAATAAGGAGAACAA+TGG | - | chr5.2:3405079-3405098 | None:intergenic | 20.0% |
| !! | CAATGTCAATTATTAAAACA+AGG | - | chr5.2:3406414-3406433 | None:intergenic | 20.0% |
| !! | TGAAAAAAATAAGAAACATC+AGG | - | chr5.2:3404254-3404273 | None:intergenic | 20.0% |
| !! | TTAAATAAAAAACATGCAAG+CGG | - | chr5.2:3404574-3404593 | None:intergenic | 20.0% |
| !! | TTATTCATTCAACAATTACA+TGG | - | chr5.2:3405786-3405805 | None:intergenic | 20.0% |
| !!! | AATATTGTGGTTTAGATTTT+CGG | + | chr5.2:3404181-3404200 | MS.gene21632:intron | 20.0% |
| !!! | ACTGTATTTAATTTGTGAAA+AGG | + | chr5.2:3404073-3404092 | MS.gene21632:intron | 20.0% |
| !!! | ATGTTTCTTATTTTTTTCAG+AGG | + | chr5.2:3404255-3404274 | MS.gene21632:intron | 20.0% |
| !!! | CTTAAGTTTAGTTATGATTT+TGG | + | chr5.2:3406015-3406034 | MS.gene21632:intron | 20.0% |
| !!! | CTTCATTCATTTAATTTTGT+TGG | + | chr5.2:3404462-3404481 | MS.gene21632:intron | 20.0% |
| !!! | TAAAATTCAAACCTGTATTT+TGG | - | chr5.2:3404418-3404437 | None:intergenic | 20.0% |
| !!! | TATTATCTGTTTTGTTCATA+AGG | - | chr5.2:3405387-3405406 | None:intergenic | 20.0% |
| !!! | TATTGTCATTTTATGAATAC+GGG | + | chr5.2:3406153-3406172 | MS.gene21632:intron | 20.0% |
| !!! | TGGATTAATTTTAAAACTGT+AGG | + | chr5.2:3406231-3406250 | MS.gene21632:intron | 20.0% |
| !!! | TGTTTTAATAATTGACATTG+TGG | + | chr5.2:3406414-3406433 | MS.gene21632:intron | 20.0% |
| !!! | TTTGAAGTATAGTATAGTAT+TGG | - | chr5.2:3402862-3402881 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTGCAAATATTG+TGG | + | chr5.2:3404168-3404187 | MS.gene21632:intron | 20.0% |
| ! | AAAAATTTGCAAGTCATCAA+AGG | - | chr5.2:3403907-3403926 | None:intergenic | 25.0% |
| ! | AAAATTTGCAGGAGTAAATA+TGG | - | chr5.2:3403650-3403669 | None:intergenic | 25.0% |
| ! | ATCAGATCATATAAACAAGT+TGG | - | chr5.2:3404045-3404064 | None:intergenic | 25.0% |
| ! | ATTATGTATGCAAATTGGTT+AGG | + | chr5.2:3406127-3406146 | MS.gene21632:intron | 25.0% |
| ! | ATTGATATTACTGTTTGCTT+TGG | + | chr5.2:3405304-3405323 | MS.gene21632:intron | 25.0% |
| ! | ATTGCAATGAACAACATTAA+TGG | - | chr5.2:3405840-3405859 | None:intergenic | 25.0% |
| ! | CTACCCCTTAAAAAAAAAAA+AGG | + | chr5.2:3402718-3402737 | MS.gene21632:intron | 25.0% |
| ! | TATATCACTCTTAATATACC+TGG | + | chr5.2:3405100-3405119 | MS.gene21632:intron | 25.0% |
| ! | TCAGAACTACAATAATCTAA+TGG | - | chr5.2:3406063-3406082 | None:intergenic | 25.0% |
| ! | TGAAACTAGACAATCTTAAA+TGG | + | chr5.2:3406298-3406317 | MS.gene21632:intron | 25.0% |
| ! | TGAATATAGACTGAAATTAC+TGG | + | chr5.2:3404868-3404887 | MS.gene21632:intron | 25.0% |
| ! | TGTTAATGTACTTAAGAGTT+AGG | - | chr5.2:3405139-3405158 | None:intergenic | 25.0% |
| ! | TTCAAAAGAAATAGACAAAC+TGG | - | chr5.2:3404832-3404851 | None:intergenic | 25.0% |
| ! | TTGAATCAAATTAGTGAATC+TGG | - | chr5.2:3403348-3403367 | None:intergenic | 25.0% |
| ! | TTGCAATGAACAACATTAAT+GGG | - | chr5.2:3405839-3405858 | None:intergenic | 25.0% |
| ! | TTGTGACAATATTTGCAAAA+GGG | + | chr5.2:3404965-3404984 | MS.gene21632:CDS | 25.0% |
| !! | TGACTAGATAATTTTTGTGA+AGG | + | chr5.2:3404114-3404133 | MS.gene21632:intron | 25.0% |
| !!! | AGATAAGCTTTAGACAAATT+AGG | - | chr5.2:3403139-3403158 | None:intergenic | 25.0% |
| !!! | ATTTATTTAGGGGTTTTGAA+GGG | + | chr5.2:3405987-3406006 | MS.gene21632:intron | 25.0% |
| !!! | GATAAGCTTTAGACAAATTA+GGG | - | chr5.2:3403138-3403157 | None:intergenic | 25.0% |
| !!! | TACTTCACTTTTTTACATTG+AGG | + | chr5.2:3406177-3406196 | MS.gene21632:intron | 25.0% |
| !!! | TATTTATTTAGGGGTTTTGA+AGG | + | chr5.2:3405986-3406005 | MS.gene21632:intron | 25.0% |
| !!! | TGTTTTAAGGAAATAGTAAC+TGG | - | chr5.2:3404734-3404753 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTCATAAGGAAAA+AGG | - | chr5.2:3405380-3405399 | None:intergenic | 25.0% |
| !!! | TTGTTTTTAGGGTTGTTTTT+GGG | + | chr5.2:3403207-3403226 | MS.gene21632:intron | 25.0% |
| !!! | TTTGTTTTTAGGGTTGTTTT+TGG | + | chr5.2:3403206-3403225 | MS.gene21632:intron | 25.0% |
| AACCAAAATTGAAATTCGTC+TGG | + | chr5.2:3405436-3405455 | MS.gene21632:CDS | 30.0% | |
| AAGAAGAAGAAGAAGAAGAA+TGG | + | chr5.2:3402910-3402929 | MS.gene21632:intron | 30.0% | |
| AAGGAAAAAGGTAAGTTACT+TGG | - | chr5.2:3405368-3405387 | None:intergenic | 30.0% | |
| ACTTATGACAGACTATGAAA+TGG | - | chr5.2:3404523-3404542 | None:intergenic | 30.0% | |
| AGATCACAAATCAATGGAAT+TGG | - | chr5.2:3404807-3404826 | None:intergenic | 30.0% | |
| ATCACTCTTATCACACATAT+GGG | - | chr5.2:3404350-3404369 | None:intergenic | 30.0% | |
| CAAAAGCTGAAGCAATTAAT+TGG | + | chr5.2:3405459-3405478 | MS.gene21632:CDS | 30.0% | |
| CAAATTAGGGTTCAATTGAA+TGG | - | chr5.2:3403125-3403144 | None:intergenic | 30.0% | |
| GAATCAGTTTAATTGCTGAA+GGG | + | chr5.2:3403495-3403514 | MS.gene21632:intron | 30.0% | |
| GTTGTGACAATATTTGCAAA+AGG | + | chr5.2:3404964-3404983 | MS.gene21632:CDS | 30.0% | |
| TAGTGCTTTCAATTACAGAA+TGG | + | chr5.2:3405719-3405738 | MS.gene21632:intron | 30.0% | |
| TATTTACCAAAATGCAGATG+AGG | + | chr5.2:3406505-3406524 | MS.gene21632:CDS | 30.0% | |
| TGAATCAGTTTAATTGCTGA+AGG | + | chr5.2:3403494-3403513 | MS.gene21632:intron | 30.0% | |
| TGGTTAAAACAGTACTCAAT+AGG | - | chr5.2:3406327-3406346 | None:intergenic | 30.0% | |
| TTCAGTGTAATCATAACTGT+CGG | - | chr5.2:3405634-3405653 | None:intergenic | 30.0% | |
| TTCCTTAAAACAAACATGCT+TGG | + | chr5.2:3404742-3404761 | MS.gene21632:intron | 30.0% | |
| TTCTGTTAGATGACATGTTT+CGG | + | chr5.2:3404542-3404561 | MS.gene21632:intron | 30.0% | |
| ! | AAAATTAATCCACTTGTTGC+TGG | - | chr5.2:3406223-3406242 | None:intergenic | 30.0% |
| ! | AATTTTCAACTCACGAAGAA+AGG | + | chr5.2:3402881-3402900 | MS.gene21632:intron | 30.0% |
| ! | ACTGGAGATAATTTGTGAAA+AGG | + | chr5.2:3403870-3403889 | MS.gene21632:intron | 30.0% |
| ! | ATTTTCAACTCACGAAGAAA+GGG | + | chr5.2:3402882-3402901 | MS.gene21632:intron | 30.0% |
| ! | TTAGGAAGTTTTCAATATCC+AGG | - | chr5.2:3405121-3405140 | None:intergenic | 30.0% |
| !! | CTGCATTTTGGTAAATATCA+CGG | - | chr5.2:3406502-3406521 | None:intergenic | 30.0% |
| !! | GTTTTGAGTAAGCTTACTTT+GGG | + | chr5.2:3404646-3404665 | MS.gene21632:intron | 30.0% |
| !! | TGTTTTGAGTAAGCTTACTT+TGG | + | chr5.2:3404645-3404664 | MS.gene21632:intron | 30.0% |
| !! | TTTTGAGTAAGCTTACTTTG+GGG | + | chr5.2:3404647-3404666 | MS.gene21632:intron | 30.0% |
| !!! | GTTTATGCGATTGGTTTTTA+GGG | + | chr5.2:3403846-3403865 | MS.gene21632:intron | 30.0% |
| !!! | TGTTTATGCGATTGGTTTTT+AGG | + | chr5.2:3403845-3403864 | MS.gene21632:intron | 30.0% |
| !!! | TTCACTTTTTTACATTGAGG+TGG | + | chr5.2:3406180-3406199 | MS.gene21632:intron | 30.0% |
| !!! | TTTTTTACATTGAGGTGGTA+TGG | + | chr5.2:3406185-3406204 | MS.gene21632:intron | 30.0% |
| AAAGTCAAGGACTAAGGATT+GGG | + | chr5.2:3405905-3405924 | MS.gene21632:CDS | 35.0% | |
| AATTACCAACCTCGATTGTT+TGG | + | chr5.2:3405204-3405223 | MS.gene21632:CDS | 35.0% | |
| ACACCTTGAAATTTACTCGT+TGG | + | chr5.2:3403752-3403771 | MS.gene21632:intron | 35.0% | |
| AGCAATTAATTGGACATCTC+TGG | + | chr5.2:3405469-3405488 | MS.gene21632:CDS | 35.0% | |
| AGTCCAACGAGTAAATTTCA+AGG | - | chr5.2:3403758-3403777 | None:intergenic | 35.0% | |
| CATCACTCTTATCACACATA+TGG | - | chr5.2:3404351-3404370 | None:intergenic | 35.0% | |
| CCATGGTTTCAATTACAGAA+TGG | + | chr5.2:3405751-3405770 | MS.gene21632:intron | 35.0% | |
| CCATTCTGTAATTGAAACCA+TGG | - | chr5.2:3405754-3405773 | None:intergenic | 35.0% | |
| CTAAAGCTTATCTTCGCAAA+GGG | + | chr5.2:3403146-3403165 | MS.gene21632:CDS | 35.0% | |
| CTAAGATTGCACTTGAAAAG+GGG | + | chr5.2:3403300-3403319 | MS.gene21632:CDS | 35.0% | |
| CTGGAAAGATCACAAATCAA+TGG | - | chr5.2:3404813-3404832 | None:intergenic | 35.0% | |
| CTGTAGGACATTGTTAAATG+TGG | + | chr5.2:3406247-3406266 | MS.gene21632:intron | 35.0% | |
| GAAAATGTTGTTGTGGACTT+TGG | + | chr5.2:3404997-3405016 | MS.gene21632:CDS | 35.0% | |
| GAAGAAATAGCAGCAAAAAC+AGG | - | chr5.2:3404446-3404465 | None:intergenic | 35.0% | |
| GAATGAGTAGTGATGAAACT+AGG | + | chr5.2:3403798-3403817 | MS.gene21632:intron | 35.0% | |
| GAGAAAGAAGAAAAGCTTGA+TGG | + | chr5.2:3406452-3406471 | MS.gene21632:CDS | 35.0% | |
| GAGAGACGAAAGTTGTATTT+AGG | + | chr5.2:3406275-3406294 | MS.gene21632:intron | 35.0% | |
| GATATAAGATTGTGCTCGAT+CGG | - | chr5.2:3403059-3403078 | None:intergenic | 35.0% | |
| GCTAAGATTGCACTTGAAAA+GGG | + | chr5.2:3403299-3403318 | MS.gene21632:CDS | 35.0% | |
| GTATGTTAATGTGTTGTGAC+TGG | + | chr5.2:3403457-3403476 | MS.gene21632:intron | 35.0% | |
| TAAGATTGCACTTGAAAAGG+GGG | + | chr5.2:3403301-3403320 | MS.gene21632:CDS | 35.0% | |
| TCAACTGATTGGAAAGAAGT+GGG | + | chr5.2:3406706-3406725 | MS.gene21632:CDS | 35.0% | |
| TCAATAAAACCCTGAAAACC+TGG | - | chr5.2:3403615-3403634 | None:intergenic | 35.0% | |
| TCTGTTAGATGACATGTTTC+GGG | + | chr5.2:3404543-3404562 | MS.gene21632:intron | 35.0% | |
| TGCTAAGATTGCACTTGAAA+AGG | + | chr5.2:3403298-3403317 | MS.gene21632:CDS | 35.0% | |
| TGCTTACTTGTTTATGCGAT+TGG | + | chr5.2:3403837-3403856 | MS.gene21632:intron | 35.0% | |
| TTAGTCCTTGACTTTGATGA+CGG | - | chr5.2:3405900-3405919 | None:intergenic | 35.0% | |
| TTCAACTGATTGGAAAGAAG+TGG | + | chr5.2:3406705-3406724 | MS.gene21632:CDS | 35.0% | |
| TTCAGGTGAGTTCATTACTT+GGG | + | chr5.2:3405532-3405551 | MS.gene21632:intron | 35.0% | |
| TTGCGGTATCAATCTATGAA+GGG | + | chr5.2:3405566-3405585 | MS.gene21632:intron | 35.0% | |
| TTGGAAACACAAACAGTAAC+TGG | + | chr5.2:3405323-3405342 | MS.gene21632:intron | 35.0% | |
| TTTCTGCAGTTCAATCTGAA+AGG | + | chr5.2:3405865-3405884 | MS.gene21632:intron | 35.0% | |
| TTTGCGGTATCAATCTATGA+AGG | + | chr5.2:3405565-3405584 | MS.gene21632:intron | 35.0% | |
| ! | AGTCTAATGAGCGAATTTTG+AGG | - | chr5.2:3403989-3404008 | None:intergenic | 35.0% |
| ! | CTTTTCTTCTTTCTCCTGAA+AGG | - | chr5.2:3406447-3406466 | None:intergenic | 35.0% |
| ! | GGAGCTTTTATGAAATCATG+TGG | - | chr5.2:3406042-3406061 | None:intergenic | 35.0% |
| ! | TCTAAAGCTTATCTTCGCAA+AGG | + | chr5.2:3403145-3403164 | MS.gene21632:CDS | 35.0% |
| ! | TGCATTTGTTTGGGATTCTT+TGG | - | chr5.2:3404380-3404399 | None:intergenic | 35.0% |
| ! | TGCCAGACGAATTTCAATTT+TGG | - | chr5.2:3405441-3405460 | None:intergenic | 35.0% |
| ! | TTAGTGAATCTGGAATCATC+AGG | - | chr5.2:3403338-3403357 | None:intergenic | 35.0% |
| ! | TTGCAGTTTCGAGGTTTTTA+GGG | + | chr5.2:3403575-3403594 | MS.gene21632:intron | 35.0% |
| ! | TTGTGACTGGTTAGTGAAAT+TGG | + | chr5.2:3403470-3403489 | MS.gene21632:intron | 35.0% |
| !! | AAATTACTGGCTCAATGTTC+TGG | + | chr5.2:3404881-3404900 | MS.gene21632:intron | 35.0% |
| !! | AAGTTTTTAAGGGAGACTGA+AGG | + | chr5.2:3404689-3404708 | MS.gene21632:intron | 35.0% |
| !! | AGCTGTTTCTGATGCTAATA+AGG | + | chr5.2:3403099-3403118 | MS.gene21632:CDS | 35.0% |
| !! | AGTTTTTAAGGGAGACTGAA+GGG | + | chr5.2:3404690-3404709 | MS.gene21632:intron | 35.0% |
| !! | TGAAGGCACGATTATCTTTT+GGG | - | chr5.2:3405516-3405535 | None:intergenic | 35.0% |
| !! | TTGATTGATGATGTTTGAGC+AGG | + | chr5.2:3404911-3404930 | MS.gene21632:intron | 35.0% |
| !!! | AGCCAAGCATGTTTGTTTTA+AGG | - | chr5.2:3404747-3404766 | None:intergenic | 35.0% |
| !!! | CTTGGGTAGTTTTTAGTTTG+CGG | + | chr5.2:3405549-3405568 | MS.gene21632:intron | 35.0% |
| AAAATGCAGATGAGGACATG+AGG | + | chr5.2:3406513-3406532 | MS.gene21632:CDS | 40.0% | |
| ACCACAACTTTGCACTTATC+AGG | - | chr5.2:3405410-3405429 | None:intergenic | 40.0% | |
| ACCAGCAGAAAATGTTGTTG+TGG | + | chr5.2:3404990-3405009 | MS.gene21632:CDS | 40.0% | |
| ACCTGATAAGTGCAAAGTTG+TGG | + | chr5.2:3405406-3405425 | MS.gene21632:CDS | 40.0% | |
| ACTAACACAGACACAGACAT+TGG | - | chr5.2:3405703-3405722 | None:intergenic | 40.0% | |
| AGTGTTACCATTGATGTTCC+TGG | + | chr5.2:3405168-3405187 | MS.gene21632:CDS | 40.0% | |
| ATAGAAGGATCTAGAAAGCG+TGG | + | chr5.2:3402769-3402788 | MS.gene21632:intron | 40.0% | |
| ATTGTCACAACCACTTCTTC+TGG | - | chr5.2:3404955-3404974 | None:intergenic | 40.0% | |
| CAAAAGATAATCGTGCCTTC+AGG | + | chr5.2:3405515-3405534 | MS.gene21632:CDS | 40.0% | |
| CAAAGTCAAGGACTAAGGAT+TGG | + | chr5.2:3405904-3405923 | MS.gene21632:CDS | 40.0% | |
| CAAGTAATGAACTCACCTGA+AGG | - | chr5.2:3405533-3405552 | None:intergenic | 40.0% | |
| CATATCCGTCATCAAAGTCA+AGG | + | chr5.2:3405892-3405911 | MS.gene21632:CDS | 40.0% | |
| CATGCTTGGCTACAATTTGT+TGG | + | chr5.2:3404756-3404775 | MS.gene21632:intron | 40.0% | |
| CTTCAGGTGAGTTCATTACT+TGG | + | chr5.2:3405531-3405550 | MS.gene21632:intron | 40.0% | |
| GAAAGAAGTGGGATCAAAGA+AGG | + | chr5.2:3406717-3406736 | MS.gene21632:CDS | 40.0% | |
| GAACAGTGCTTTCAACTGAT+TGG | + | chr5.2:3406695-3406714 | MS.gene21632:CDS | 40.0% | |
| GACTAAGGATTGGGATAAGT+TGG | + | chr5.2:3405914-3405933 | MS.gene21632:CDS | 40.0% | |
| GGAAGCTGAAGTGAAAAAAG+AGG | + | chr5.2:3405935-3405954 | MS.gene21632:CDS | 40.0% | |
| GGGGGAAAATCAAATAGCAT+CGG | - | chr5.2:3405045-3405064 | None:intergenic | 40.0% | |
| GTAATCATAACTGTCGGTGT+CGG | - | chr5.2:3405628-3405647 | None:intergenic | 40.0% | |
| GTCATCAAAGTCAAGGACTA+AGG | + | chr5.2:3405899-3405918 | MS.gene21632:CDS | 40.0% | |
| GTTACCTTTCCAAACAATCG+AGG | - | chr5.2:3405216-3405235 | None:intergenic | 40.0% | |
| TGCGGTATCAATCTATGAAG+GGG | + | chr5.2:3405567-3405586 | MS.gene21632:intron | 40.0% | |
| TGGTGCAACTGCATTTGTTT+GGG | - | chr5.2:3404389-3404408 | None:intergenic | 40.0% | |
| ! | ATTTGGGTTCATTTGGTGGT+AGG | - | chr5.2:3404303-3404322 | None:intergenic | 40.0% |
| ! | GATGATTTGGGTTCATTTGG+TGG | - | chr5.2:3404307-3404326 | None:intergenic | 40.0% |
| ! | GCAGATGATTTGGGTTCATT+TGG | - | chr5.2:3404310-3404329 | None:intergenic | 40.0% |
| ! | GTTGCAGTTTCGAGGTTTTT+AGG | + | chr5.2:3403574-3403593 | MS.gene21632:intron | 40.0% |
| ! | TCATGTCCTCATCTGCATTT+TGG | - | chr5.2:3406514-3406533 | None:intergenic | 40.0% |
| ! | TCCACAACAACATTTTCTGC+TGG | - | chr5.2:3404994-3405013 | None:intergenic | 40.0% |
| ! | TTTGGGTTCATTTGGTGGTA+GGG | - | chr5.2:3404302-3404321 | None:intergenic | 40.0% |
| !! | CAATCGAGGTTGGTAATTGT+AGG | - | chr5.2:3405202-3405221 | None:intergenic | 40.0% |
| !! | CTGAAGGCACGATTATCTTT+TGG | - | chr5.2:3405517-3405536 | None:intergenic | 40.0% |
| !! | GAAGGCACGATTATCTTTTG+GGG | - | chr5.2:3405515-3405534 | None:intergenic | 40.0% |
| !! | GACATCTCTGGAATATAGCA+AGG | + | chr5.2:3405481-3405500 | MS.gene21632:CDS | 40.0% |
| !! | GTTGGTAATTGTAGGCATCT+TGG | - | chr5.2:3405194-3405213 | None:intergenic | 40.0% |
| !! | TTGGCTACAATTTGTTGGTG+TGG | + | chr5.2:3404761-3404780 | MS.gene21632:intron | 40.0% |
| !!! | AACCTGTATTTTGGTCTGAC+TGG | - | chr5.2:3404409-3404428 | None:intergenic | 40.0% |
| !!! | AGGTTTTTAGGGTTTCAGTC+TGG | + | chr5.2:3403586-3403605 | MS.gene21632:intron | 40.0% |
| AACAATGGAGAGCAGGTAAG+GGG | - | chr5.2:3405064-3405083 | None:intergenic | 45.0% | |
| AACAGACGCAGCAGATGATT+TGG | - | chr5.2:3404320-3404339 | None:intergenic | 45.0% | |
| AAGGCATGGAGGTGAAGAAA+TGG | + | chr5.2:3406758-3406777 | MS.gene21632:CDS | 45.0% | |
| ACAGACGCAGCAGATGATTT+GGG | - | chr5.2:3404319-3404338 | None:intergenic | 45.0% | |
| AGAACAATGGAGAGCAGGTA+AGG | - | chr5.2:3405066-3405085 | None:intergenic | 45.0% | |
| AGAAGTGGGATCAAAGAAGG+TGG | + | chr5.2:3406720-3406739 | MS.gene21632:CDS | 45.0% | |
| AGGCATGGAGGTGAAGAAAT+GGG | + | chr5.2:3406759-3406778 | MS.gene21632:CDS | 45.0% | |
| AGGGAGACTGAAGGGAAAAA+AGG | + | chr5.2:3404698-3404717 | MS.gene21632:intron | 45.0% | |
| ATCTTGGCCAGGAACATCAA+TGG | - | chr5.2:3405178-3405197 | None:intergenic | 45.0% | |
| CACCAGTCAGACCAAAATAC+AGG | + | chr5.2:3404404-3404423 | MS.gene21632:CDS | 45.0% | |
| CCAACCTCGATTGTTTGGAA+AGG | + | chr5.2:3405209-3405228 | MS.gene21632:CDS | 45.0% | |
| CCTTTCCAAACAATCGAGGT+TGG | - | chr5.2:3405212-3405231 | None:intergenic | 45.0% | |
| CTGGTGCAACTGCATTTGTT+TGG | - | chr5.2:3404390-3404409 | None:intergenic | 45.0% | |
| GAACAATGGAGAGCAGGTAA+GGG | - | chr5.2:3405065-3405084 | None:intergenic | 45.0% | |
| GATTCATTGCCAGCAACAAG+TGG | + | chr5.2:3406211-3406230 | MS.gene21632:intron | 45.0% | |
| GGCTTGGGAGTAGAAATCAA+CGG | - | chr5.2:3403002-3403021 | None:intergenic | 45.0% | |
| GGGAGACTGAAGGGAAAAAA+GGG | + | chr5.2:3404699-3404718 | MS.gene21632:intron | 45.0% | |
| GTGTTGTAGTTGCAGTTTCG+AGG | + | chr5.2:3403566-3403585 | MS.gene21632:intron | 45.0% | |
| TAAGGAGAACAATGGAGAGC+AGG | - | chr5.2:3405071-3405090 | None:intergenic | 45.0% | |
| TAATTGTAGGCATCTTGGCC+AGG | - | chr5.2:3405189-3405208 | None:intergenic | 45.0% | |
| TTACCAGAAGCCAGAAGAAG+TGG | + | chr5.2:3404942-3404961 | MS.gene21632:CDS | 45.0% | |
| !! | GACTTTGATGACGGATATGC+AGG | - | chr5.2:3405891-3405910 | None:intergenic | 45.0% |
| !!! | CAGAATGGTTGCTTTTGCCA+TGG | + | chr5.2:3405734-3405753 | MS.gene21632:intron | 45.0% |
| !! | AAATAAATAAAAACATAAAT+AGG | - | chr5.2:3405975-3405994 | None:intergenic | 5.0% |
| !! | AATAAATAAAAACATAAATA+GGG | - | chr5.2:3405974-3405993 | None:intergenic | 5.0% |
| !!! | ATTTATGTTTTTATTTATTT+AGG | + | chr5.2:3405975-3405994 | MS.gene21632:intron | 5.0% |
| !!! | TTTATGTTTTTATTTATTTA+GGG | + | chr5.2:3405976-3405995 | MS.gene21632:intron | 5.0% |
| !!! | TTTTTGTTTTATTTAAATTT+AGG | + | chr5.2:3403544-3403563 | MS.gene21632:intron | 5.0% |
| ACAATGGAGAGCAGGTAAGG+GGG | - | chr5.2:3405063-3405082 | None:intergenic | 50.0% | |
| ATCAGGCTCGCATATCATGC+AGG | - | chr5.2:3404237-3404256 | None:intergenic | 50.0% | |
| ATCTATGAAGGGGACACTCC+CGG | + | chr5.2:3405577-3405596 | MS.gene21632:intron | 50.0% | |
| ATTGTGGTGCTCTGCCTTTC+AGG | + | chr5.2:3406430-3406449 | MS.gene21632:intron | 50.0% | |
| GTGGGATCAAAGAAGGTGGA+AGG | + | chr5.2:3406724-3406743 | MS.gene21632:CDS | 50.0% | |
| TGTCAACGCTTCATTGCTGC+TGG | + | chr5.2:3403371-3403390 | MS.gene21632:CDS | 50.0% | |
| TTCTTCACCTCCATGCCTTC+CGG | - | chr5.2:3406757-3406776 | None:intergenic | 50.0% | |
| ! | GGGATCGATTTCGATGGCTT+GGG | - | chr5.2:3403017-3403036 | None:intergenic | 50.0% |
| ! | GTTGGTGGGATCGATTTCGA+TGG | - | chr5.2:3403023-3403042 | None:intergenic | 50.0% |
| ! | TGGGATCGATTTCGATGGCT+TGG | - | chr5.2:3403018-3403037 | None:intergenic | 50.0% |
| !! | ATAACTGTCGGTGTCGGACA+CGG | - | chr5.2:3405622-3405641 | None:intergenic | 50.0% |
| !! | CAACCACTTCTTCTGGCTTC+TGG | - | chr5.2:3404948-3404967 | None:intergenic | 50.0% |
| !!! | GCGATTGGTTTTTAGGGCAC+TGG | + | chr5.2:3403852-3403871 | MS.gene21632:intron | 50.0% |
| ACACCGGGACACACCTAATC+CGG | - | chr5.2:3405599-3405618 | None:intergenic | 55.0% | |
| ATCGGCGAAGAGATTGGCGT+TGG | - | chr5.2:3403041-3403060 | None:intergenic | 55.0% | |
| CTGCGATGTCACGCAGTTCA+AGG | - | chr5.2:3406662-3406681 | None:intergenic | 55.0% | |
| GAAGGTGGAAGGAAGTCCTC+CGG | + | chr5.2:3406735-3406754 | MS.gene21632:CDS | 55.0% | |
| TGCTCGATCGGCGAAGAGAT+TGG | - | chr5.2:3403047-3403066 | None:intergenic | 55.0% | |
| ! | AGTCTGGCGTCCAGGTTTTC+AGG | + | chr5.2:3403602-3403621 | MS.gene21632:intron | 55.0% |
| ! | GTCTGGCGTCCAGGTTTTCA+GGG | + | chr5.2:3403603-3403622 | MS.gene21632:intron | 55.0% |
| ! | TTGGTGGTAGGGTGCTCGTA+AGG | - | chr5.2:3404291-3404310 | None:intergenic | 55.0% |
| !! | GCGAAGAGATTGGCGTTGGT+GGG | - | chr5.2:3403037-3403056 | None:intergenic | 55.0% |
| AGGAAGTCCTCCGGAAGGCA+TGG | + | chr5.2:3406744-3406763 | MS.gene21632:CDS | 60.0% | |
| AGGGTTTCAGTCTGGCGTCC+AGG | + | chr5.2:3403594-3403613 | MS.gene21632:intron | 60.0% | |
| CACCGGGACACACCTAATCC+GGG | - | chr5.2:3405598-3405617 | None:intergenic | 60.0% | |
| GAACTGCGTGACATCGCAGC+TGG | + | chr5.2:3406663-3406682 | MS.gene21632:intron | 60.0% | |
| GAAGGGGACACTCCCGGATT+AGG | + | chr5.2:3405583-3405602 | MS.gene21632:intron | 60.0% | |
| GTGGAAGGAAGTCCTCCGGA+AGG | + | chr5.2:3406739-3406758 | MS.gene21632:CDS | 60.0% | |
| TTCACCTCCATGCCTTCCGG+AGG | - | chr5.2:3406754-3406773 | None:intergenic | 60.0% | |
| ! | AAGTCCTCCGGAAGGCATGG+AGG | + | chr5.2:3406747-3406766 | MS.gene21632:CDS | 60.0% |
| ! | CTCCCGGATTAGGTGTGTCC+CGG | + | chr5.2:3405593-3405612 | MS.gene21632:intron | 60.0% |
| ! | GGCGAAGAGATTGGCGTTGG+TGG | - | chr5.2:3403038-3403057 | None:intergenic | 60.0% |
| !! | TCGGTGTCGGACACGGACAC+CGG | - | chr5.2:3405615-3405634 | None:intergenic | 65.0% |
| ! | CGGTGTCGGACACGGACACC+GGG | - | chr5.2:3405614-3405633 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 3402695 | 3406789 | 3402695 | ID=MS.gene21632 |
| chr5.2 | mRNA | 3402695 | 3406789 | 3402695 | ID=MS.gene21632.t1;Parent=MS.gene21632 |
| chr5.2 | exon | 3402695 | 3402701 | 3402695 | ID=MS.gene21632.t1.exon1;Parent=MS.gene21632.t1 |
| chr5.2 | CDS | 3402695 | 3402701 | 3402695 | ID=cds.MS.gene21632.t1;Parent=MS.gene21632.t1 |
| chr5.2 | exon | 3402948 | 3403167 | 3402948 | ID=MS.gene21632.t1.exon2;Parent=MS.gene21632.t1 |
| chr5.2 | CDS | 3402948 | 3403167 | 3402948 | ID=cds.MS.gene21632.t1;Parent=MS.gene21632.t1 |
| chr5.2 | exon | 3403265 | 3403392 | 3403265 | ID=MS.gene21632.t1.exon3;Parent=MS.gene21632.t1 |
| chr5.2 | CDS | 3403265 | 3403392 | 3403265 | ID=cds.MS.gene21632.t1;Parent=MS.gene21632.t1 |
| chr5.2 | exon | 3404275 | 3404425 | 3404275 | ID=MS.gene21632.t1.exon4;Parent=MS.gene21632.t1 |
| chr5.2 | CDS | 3404275 | 3404425 | 3404275 | ID=cds.MS.gene21632.t1;Parent=MS.gene21632.t1 |
| chr5.2 | exon | 3404933 | 3405029 | 3404933 | ID=MS.gene21632.t1.exon5;Parent=MS.gene21632.t1 |
| chr5.2 | CDS | 3404933 | 3405029 | 3404933 | ID=cds.MS.gene21632.t1;Parent=MS.gene21632.t1 |
| chr5.2 | exon | 3405165 | 3405230 | 3405165 | ID=MS.gene21632.t1.exon6;Parent=MS.gene21632.t1 |
| chr5.2 | CDS | 3405165 | 3405230 | 3405165 | ID=cds.MS.gene21632.t1;Parent=MS.gene21632.t1 |
| chr5.2 | exon | 3405401 | 3405536 | 3405401 | ID=MS.gene21632.t1.exon7;Parent=MS.gene21632.t1 |
| chr5.2 | CDS | 3405401 | 3405536 | 3405401 | ID=cds.MS.gene21632.t1;Parent=MS.gene21632.t1 |
| chr5.2 | exon | 3405874 | 3405956 | 3405874 | ID=MS.gene21632.t1.exon8;Parent=MS.gene21632.t1 |
| chr5.2 | CDS | 3405874 | 3405956 | 3405874 | ID=cds.MS.gene21632.t1;Parent=MS.gene21632.t1 |
| chr5.2 | exon | 3406452 | 3406556 | 3406452 | ID=MS.gene21632.t1.exon9;Parent=MS.gene21632.t1 |
| chr5.2 | CDS | 3406452 | 3406556 | 3406452 | ID=cds.MS.gene21632.t1;Parent=MS.gene21632.t1 |
| chr5.2 | exon | 3406682 | 3406789 | 3406682 | ID=MS.gene21632.t1.exon10;Parent=MS.gene21632.t1 |
| chr5.2 | CDS | 3406682 | 3406789 | 3406682 | ID=cds.MS.gene21632.t1;Parent=MS.gene21632.t1 |
| Gene Sequence |
| Protein sequence |
