Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96216.t1 | XP_003593965.2 | 86 | 229 | 32 | 0 | 36 | 264 | 157 | 385 | 1.50E-105 | 392.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96216.t1 | G7IPZ8 | 86.0 | 229 | 32 | 0 | 36 | 264 | 157 | 385 | 1.1e-105 | 392.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene96216.t1 | TR | mTERF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051247 | MS.gene96216 | 0.806149 | 9.46E-50 | -1.69E-46 |
MS.gene051700 | MS.gene96216 | 0.815334 | 9.75E-52 | -1.69E-46 |
MS.gene053221 | MS.gene96216 | 0.806014 | 1.01E-49 | -1.69E-46 |
MS.gene054775 | MS.gene96216 | 0.805023 | 1.63E-49 | -1.69E-46 |
MS.gene055466 | MS.gene96216 | 0.806089 | 9.74E-50 | -1.69E-46 |
MS.gene055778 | MS.gene96216 | 0.805126 | 1.55E-49 | -1.69E-46 |
MS.gene05604 | MS.gene96216 | 0.800913 | 1.15E-48 | -1.69E-46 |
MS.gene057026 | MS.gene96216 | 0.81231 | 4.52E-51 | -1.69E-46 |
MS.gene059625 | MS.gene96216 | 0.805259 | 1.46E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96216.t1 | MTR_2g019840 | 85.171 | 263 | 39 | 0 | 2 | 264 | 123 | 385 | 1.88e-163 | 458 |
MS.gene96216.t1 | MTR_2g019810 | 75.099 | 253 | 63 | 0 | 2 | 254 | 111 | 363 | 4.65e-138 | 393 |
MS.gene96216.t1 | MTR_2g436400 | 47.012 | 251 | 129 | 3 | 2 | 250 | 129 | 377 | 1.72e-70 | 221 |
MS.gene96216.t1 | MTR_4g119550 | 42.529 | 261 | 146 | 3 | 2 | 260 | 132 | 390 | 9.10e-68 | 215 |
MS.gene96216.t1 | MTR_2g437030 | 44.314 | 255 | 138 | 3 | 2 | 254 | 208 | 460 | 9.07e-65 | 209 |
MS.gene96216.t1 | MTR_2g436440 | 41.406 | 256 | 146 | 3 | 2 | 255 | 128 | 381 | 3.22e-63 | 203 |
MS.gene96216.t1 | MTR_2g437080 | 44.141 | 256 | 139 | 3 | 2 | 255 | 122 | 375 | 7.64e-61 | 197 |
MS.gene96216.t1 | MTR_2g437060 | 43.825 | 251 | 137 | 3 | 2 | 250 | 137 | 385 | 6.37e-60 | 195 |
MS.gene96216.t1 | MTR_2g437040 | 39.844 | 256 | 148 | 5 | 2 | 254 | 122 | 374 | 1.06e-57 | 189 |
MS.gene96216.t1 | MTR_2g437960 | 42.471 | 259 | 142 | 5 | 2 | 255 | 135 | 391 | 4.31e-57 | 187 |
MS.gene96216.t1 | MTR_2g437960 | 42.471 | 259 | 142 | 5 | 2 | 255 | 135 | 391 | 5.59e-57 | 188 |
MS.gene96216.t1 | MTR_2g436460 | 42.745 | 255 | 141 | 4 | 2 | 253 | 127 | 379 | 5.97e-57 | 186 |
MS.gene96216.t1 | MTR_2g437020 | 42.692 | 260 | 146 | 3 | 2 | 259 | 121 | 379 | 1.15e-56 | 186 |
MS.gene96216.t1 | MTR_2g437240 | 40.755 | 265 | 138 | 5 | 2 | 255 | 147 | 403 | 6.63e-56 | 185 |
MS.gene96216.t1 | MTR_2g437990 | 41.445 | 263 | 138 | 5 | 2 | 255 | 132 | 387 | 9.31e-56 | 185 |
MS.gene96216.t1 | MTR_2g437120 | 41.923 | 260 | 145 | 4 | 2 | 257 | 133 | 390 | 2.52e-55 | 183 |
MS.gene96216.t1 | MTR_2g438020 | 42.857 | 259 | 141 | 4 | 2 | 255 | 186 | 442 | 7.10e-54 | 181 |
MS.gene96216.t1 | MTR_2g076320 | 40.996 | 261 | 147 | 5 | 2 | 257 | 132 | 390 | 1.28e-53 | 179 |
MS.gene96216.t1 | MTR_2g437260 | 35.985 | 264 | 167 | 2 | 2 | 263 | 116 | 379 | 1.92e-53 | 178 |
MS.gene96216.t1 | MTR_2g438010 | 39.453 | 256 | 148 | 4 | 5 | 255 | 155 | 408 | 3.45e-53 | 178 |
MS.gene96216.t1 | MTR_2g437160 | 40.769 | 260 | 148 | 4 | 2 | 257 | 145 | 402 | 4.59e-53 | 177 |
MS.gene96216.t1 | MTR_2g437130 | 40.078 | 257 | 148 | 5 | 2 | 255 | 123 | 376 | 1.21e-52 | 176 |
MS.gene96216.t1 | MTR_2g437200 | 41.732 | 254 | 141 | 4 | 2 | 250 | 147 | 398 | 2.11e-52 | 175 |
MS.gene96216.t1 | MTR_2g437100 | 42.205 | 263 | 133 | 6 | 2 | 252 | 142 | 397 | 9.72e-51 | 171 |
MS.gene96216.t1 | MTR_2g437170 | 41.603 | 262 | 132 | 7 | 2 | 250 | 137 | 390 | 1.78e-49 | 168 |
MS.gene96216.t1 | MTR_2g437150 | 40.520 | 269 | 139 | 7 | 2 | 257 | 137 | 397 | 3.28e-49 | 167 |
MS.gene96216.t1 | MTR_2g437180 | 41.339 | 254 | 140 | 6 | 2 | 250 | 131 | 380 | 8.85e-49 | 166 |
MS.gene96216.t1 | MTR_4g120380 | 38.583 | 254 | 142 | 4 | 2 | 248 | 124 | 370 | 6.38e-47 | 160 |
MS.gene96216.t1 | MTR_3g450500 | 34.630 | 257 | 160 | 4 | 1 | 250 | 117 | 372 | 7.35e-44 | 152 |
MS.gene96216.t1 | MTR_2g437940 | 45.641 | 195 | 102 | 3 | 63 | 255 | 167 | 359 | 1.22e-43 | 152 |
MS.gene96216.t1 | MTR_2g437160 | 37.288 | 236 | 131 | 4 | 32 | 250 | 69 | 304 | 1.45e-43 | 150 |
MS.gene96216.t1 | MTR_4g119580 | 36.546 | 249 | 154 | 3 | 2 | 248 | 124 | 370 | 3.83e-41 | 145 |
MS.gene96216.t1 | MTR_2g437090 | 47.500 | 160 | 82 | 2 | 97 | 254 | 3 | 162 | 1.66e-40 | 138 |
MS.gene96216.t1 | MTR_4g120380 | 37.662 | 231 | 130 | 4 | 2 | 225 | 124 | 347 | 4.47e-40 | 143 |
MS.gene96216.t1 | MTR_4g007490 | 33.074 | 257 | 165 | 4 | 1 | 251 | 116 | 371 | 2.28e-37 | 135 |
MS.gene96216.t1 | MTR_4g119570 | 34.677 | 248 | 125 | 4 | 3 | 248 | 17 | 229 | 3.84e-33 | 120 |
MS.gene96216.t1 | MTR_2g019830 | 81.159 | 69 | 13 | 0 | 187 | 255 | 136 | 204 | 6.41e-27 | 103 |
MS.gene96216.t1 | MTR_8g080990 | 29.719 | 249 | 168 | 4 | 1 | 244 | 122 | 368 | 1.12e-23 | 99.0 |
MS.gene96216.t1 | MTR_8g081000 | 26.587 | 252 | 180 | 4 | 1 | 248 | 135 | 385 | 2.47e-21 | 92.4 |
MS.gene96216.t1 | MTR_8g081000 | 26.587 | 252 | 180 | 4 | 1 | 248 | 135 | 385 | 2.81e-21 | 92.4 |
MS.gene96216.t1 | MTR_8g081000 | 26.587 | 252 | 180 | 4 | 1 | 248 | 135 | 385 | 3.47e-21 | 92.0 |
MS.gene96216.t1 | MTR_2g436380 | 47.692 | 65 | 33 | 1 | 97 | 160 | 3 | 67 | 2.27e-11 | 63.2 |
MS.gene96216.t1 | MTR_3g085240 | 30.370 | 135 | 77 | 2 | 108 | 242 | 132 | 249 | 3.88e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96216.t1 | AT5G07900 | 37.402 | 254 | 151 | 4 | 1 | 247 | 147 | 399 | 1.04e-51 | 174 |
MS.gene96216.t1 | AT1G21150 | 29.572 | 257 | 175 | 3 | 1 | 251 | 98 | 354 | 9.80e-34 | 125 |
MS.gene96216.t1 | AT1G21150 | 29.572 | 257 | 175 | 3 | 1 | 251 | 134 | 390 | 1.85e-33 | 125 |
MS.gene96216.t1 | AT1G21150 | 29.572 | 257 | 175 | 3 | 1 | 251 | 198 | 454 | 5.53e-33 | 125 |
MS.gene96216.t1 | AT1G62010 | 28.854 | 253 | 131 | 7 | 2 | 213 | 117 | 361 | 6.43e-22 | 94.4 |
MS.gene96216.t1 | AT1G61970 | 26.736 | 288 | 166 | 9 | 2 | 247 | 131 | 415 | 5.46e-21 | 91.7 |
MS.gene96216.t1 | AT1G61970 | 26.736 | 288 | 166 | 9 | 2 | 247 | 131 | 415 | 5.46e-21 | 91.7 |
MS.gene96216.t1 | AT1G61970 | 26.736 | 288 | 166 | 9 | 2 | 247 | 131 | 415 | 5.46e-21 | 91.7 |
MS.gene96216.t1 | AT1G61970 | 26.736 | 288 | 166 | 9 | 2 | 247 | 131 | 415 | 5.46e-21 | 91.7 |
MS.gene96216.t1 | AT1G61970 | 26.736 | 288 | 166 | 9 | 2 | 247 | 131 | 415 | 5.46e-21 | 91.7 |
MS.gene96216.t1 | AT1G61970 | 26.736 | 288 | 166 | 9 | 2 | 247 | 131 | 415 | 5.46e-21 | 91.7 |
MS.gene96216.t1 | AT1G61970 | 26.736 | 288 | 166 | 9 | 2 | 247 | 131 | 415 | 5.46e-21 | 91.7 |
MS.gene96216.t1 | AT1G61980 | 26.644 | 289 | 165 | 9 | 2 | 247 | 131 | 415 | 1.67e-19 | 87.4 |
MS.gene96216.t1 | AT1G61980 | 26.644 | 289 | 165 | 9 | 2 | 247 | 131 | 415 | 1.67e-19 | 87.4 |
MS.gene96216.t1 | AT1G61980 | 26.644 | 289 | 165 | 9 | 2 | 247 | 131 | 415 | 1.67e-19 | 87.4 |
MS.gene96216.t1 | AT1G61990 | 26.224 | 286 | 163 | 8 | 2 | 247 | 131 | 408 | 3.13e-19 | 86.7 |
MS.gene96216.t1 | AT1G61990 | 26.224 | 286 | 163 | 8 | 2 | 247 | 131 | 408 | 3.13e-19 | 86.7 |
MS.gene96216.t1 | AT1G62085 | 27.795 | 331 | 152 | 12 | 2 | 257 | 134 | 452 | 3.09e-16 | 78.2 |
MS.gene96216.t1 | AT1G62085 | 27.795 | 331 | 152 | 12 | 2 | 257 | 134 | 452 | 3.09e-16 | 78.2 |
MS.gene96216.t1 | AT5G64950 | 26.437 | 261 | 178 | 6 | 1 | 248 | 117 | 376 | 6.30e-15 | 74.3 |
MS.gene96216.t1 | AT1G62110 | 24.204 | 314 | 151 | 8 | 2 | 233 | 131 | 439 | 1.65e-14 | 73.2 |
MS.gene96216.t1 | AT5G23930 | 27.597 | 308 | 137 | 9 | 2 | 233 | 134 | 431 | 5.32e-14 | 71.6 |
MS.gene96216.t1 | AT1G61960 | 32.335 | 167 | 104 | 6 | 2 | 163 | 131 | 293 | 8.26e-14 | 71.2 |
MS.gene96216.t1 | AT1G61960 | 30.000 | 120 | 80 | 1 | 132 | 247 | 332 | 451 | 5.97e-12 | 65.5 |
MS.gene96216.t1 | AT3G46950 | 30.303 | 165 | 105 | 5 | 2 | 163 | 131 | 288 | 1.40e-13 | 70.5 |
MS.gene96216.t1 | AT1G79220 | 28.125 | 256 | 145 | 8 | 3 | 253 | 161 | 382 | 2.11e-12 | 66.6 |
Find 33 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAAAAGATAGCAGGATTTC+TGG | 0.169200 | 2.2:+64985665 | None:intergenic |
AAAACAAACACTCAGAAATT+TGG | 0.172074 | 2.2:+64985040 | None:intergenic |
ATTCAAATCCTGCTTCAAAA+TGG | 0.214854 | 2.2:-64985513 | MS.gene96216:CDS |
TTTGATTAAGGATGCTAAAT+TGG | 0.230774 | 2.2:-64985073 | MS.gene96216:CDS |
AACAATGAAAACAGTTGTTT+TGG | 0.284531 | 2.2:+64985377 | None:intergenic |
ACCAATTTCGAAACAAAATA+AGG | 0.302219 | 2.2:+64985472 | None:intergenic |
TTGGTGGAAGTAAATGAATT+AGG | 0.343678 | 2.2:-64985408 | MS.gene96216:CDS |
TTCAAATCCTGCTTCAAAAT+GGG | 0.347056 | 2.2:-64985512 | MS.gene96216:CDS |
TTGAAATTTCTTGAGTCTAA+AGG | 0.377057 | 2.2:-64985096 | MS.gene96216:CDS |
GATTGATGTGTATAAGAAAT+GGG | 0.377187 | 2.2:-64985310 | MS.gene96216:CDS |
TGAGTCTAAAGGTTTGATTA+AGG | 0.378829 | 2.2:-64985085 | MS.gene96216:CDS |
AGATTGATGTGTATAAGAAA+TGG | 0.401224 | 2.2:-64985311 | MS.gene96216:CDS |
ATTAAGGATGCTAAATTGGC+TGG | 0.417571 | 2.2:-64985069 | MS.gene96216:CDS |
TTTGCTGAGTCTTGAGAAAA+GGG | 0.428056 | 2.2:-64985139 | MS.gene96216:CDS |
GACTCAGCAAAAGAAGTATT+GGG | 0.431337 | 2.2:+64985151 | None:intergenic |
AGACTCAGCAAAAGAAGTAT+TGG | 0.433507 | 2.2:+64985150 | None:intergenic |
AATGCCTTCTCAAATCTTGA+AGG | 0.433670 | 2.2:+64985429 | None:intergenic |
GAAGTTTGTGTATTGCTTCG+AGG | 0.509974 | 2.2:-64985013 | MS.gene96216:CDS |
TTCAAGATTTGAGAAGGCAT+TGG | 0.516289 | 2.2:-64985427 | MS.gene96216:CDS |
GGCATCTGTTCGTAAAATTG+AGG | 0.523840 | 2.2:-64985232 | MS.gene96216:CDS |
AAGATTTGAGAAGGCATTGG+TGG | 0.528058 | 2.2:-64985424 | MS.gene96216:CDS |
TCAAATCCTGCTTCAAAATG+GGG | 0.541281 | 2.2:-64985511 | MS.gene96216:CDS |
GAAGTATCCATGGTGTATGT+TGG | 0.562557 | 2.2:-64985253 | MS.gene96216:CDS |
CATCAATCTTCCTTTCCCAA+AGG | 0.572836 | 2.2:+64985325 | None:intergenic |
TTTGATAAAATGATAACAAG+GGG | 0.581767 | 2.2:+64985620 | None:intergenic |
TTCTGGTGATGATTTGAACA+AGG | 0.591029 | 2.2:+64985682 | None:intergenic |
AATTTCAAGACAAAAGCTCT+AGG | 0.592288 | 2.2:+64985111 | None:intergenic |
GAAGCCTTCAAGATTTGAGA+AGG | 0.601085 | 2.2:-64985433 | MS.gene96216:CDS |
AAACACTCAGAAATTTGGAA+AGG | 0.625518 | 2.2:+64985045 | None:intergenic |
AAAATAAGGACTTTAGACTC+AGG | 0.629406 | 2.2:+64985486 | None:intergenic |
ATTGATGTGTATAAGAAATG+GGG | 0.652614 | 2.2:-64985309 | MS.gene96216:CDS |
ACAGATGCCAACATACACCA+TGG | 0.670800 | 2.2:+64985246 | None:intergenic |
ATGTGTATAAGAAATGGGGT+TGG | 0.700509 | 2.2:-64985305 | MS.gene96216:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTAATAAAAAAATCCTT+TGG | - | chr2.2:64985716-64985735 | MS.gene96216:intron | 10.0% |
!! | AATTAATAAAAAAATCCTTT+GGG | - | chr2.2:64985717-64985736 | MS.gene96216:intron | 10.0% |
!!! | TTTTGATAAAATGATAACAA+GGG | + | chr2.2:64985441-64985460 | None:intergenic | 15.0% |
!! | TTTGATAAAATGATAACAAG+GGG | + | chr2.2:64985440-64985459 | None:intergenic | 20.0% |
!!! | CTTTTGATAAAATGATAACA+AGG | + | chr2.2:64985442-64985461 | None:intergenic | 20.0% |
! | AAAACAAACACTCAGAAATT+TGG | + | chr2.2:64986020-64986039 | None:intergenic | 25.0% |
! | AACTATCTCATTCAAAATCT+TGG | - | chr2.2:64985133-64985152 | MS.gene96216:CDS | 25.0% |
! | ACCAATTTCGAAACAAAATA+AGG | + | chr2.2:64985588-64985607 | None:intergenic | 25.0% |
! | ACTATCTCATTCAAAATCTT+GGG | - | chr2.2:64985134-64985153 | MS.gene96216:CDS | 25.0% |
! | AGAAAAAAGATGTTTCCAAT+AGG | - | chr2.2:64986100-64986119 | MS.gene96216:intron | 25.0% |
! | AGATTGATGTGTATAAGAAA+TGG | - | chr2.2:64985746-64985765 | MS.gene96216:intron | 25.0% |
! | ATTGATGTGTATAAGAAATG+GGG | - | chr2.2:64985748-64985767 | MS.gene96216:intron | 25.0% |
! | CATGTGATTTGAATAATGAA+AGG | + | chr2.2:64985231-64985250 | None:intergenic | 25.0% |
! | CTTTCATTATTCAAATCACA+TGG | - | chr2.2:64985229-64985248 | MS.gene96216:CDS | 25.0% |
! | GATTGATGTGTATAAGAAAT+GGG | - | chr2.2:64985747-64985766 | MS.gene96216:intron | 25.0% |
! | TTGAAATTTCTTGAGTCTAA+AGG | - | chr2.2:64985961-64985980 | MS.gene96216:intron | 25.0% |
! | TTTGATTAAGGATGCTAAAT+TGG | - | chr2.2:64985984-64986003 | MS.gene96216:intron | 25.0% |
!! | AACAATGAAAACAGTTGTTT+TGG | + | chr2.2:64985683-64985702 | None:intergenic | 25.0% |
!! | AAGATTTTGAATGAGATAGT+TGG | + | chr2.2:64985134-64985153 | None:intergenic | 25.0% |
!! | AAGCTTTTATAAAAGATAGC+AGG | + | chr2.2:64985403-64985422 | None:intergenic | 25.0% |
!! | ATAAAAAAATCCTTTGGGAA+AGG | - | chr2.2:64985722-64985741 | MS.gene96216:intron | 25.0% |
!! | GATCTAAAGAGAGAATTTTT+GGG | + | chr2.2:64985294-64985313 | None:intergenic | 25.0% |
!! | TGCTATCTTTTATAAAAGCT+TGG | - | chr2.2:64985402-64985421 | MS.gene96216:CDS | 25.0% |
!!! | ACAATGAAAACAGTTGTTTT+GGG | + | chr2.2:64985682-64985701 | None:intergenic | 25.0% |
!!! | ATCTTTTTTCAACATCCTAT+TGG | + | chr2.2:64986118-64986137 | None:intergenic | 25.0% |
!!! | GAAATTTTTTGTTGATCACA+TGG | - | chr2.2:64985855-64985874 | MS.gene96216:intron | 25.0% |
!!! | TCCTTATTTTGTTTCGAAAT+TGG | - | chr2.2:64985584-64985603 | MS.gene96216:CDS | 25.0% |
AAAATAAGGACTTTAGACTC+AGG | + | chr2.2:64985574-64985593 | None:intergenic | 30.0% | |
AAAATTGAGTTTGGGAAGAA+TGG | + | chr2.2:64985326-64985345 | None:intergenic | 30.0% | |
AAACACTCAGAAATTTGGAA+AGG | + | chr2.2:64986015-64986034 | None:intergenic | 30.0% | |
AAACTGAATGTGAGGTTATT+GGG | + | chr2.2:64985022-64985041 | None:intergenic | 30.0% | |
AATTTCAAGACAAAAGCTCT+AGG | + | chr2.2:64985949-64985968 | None:intergenic | 30.0% | |
ATAAAAGATAGCAGGATTTC+TGG | + | chr2.2:64985395-64985414 | None:intergenic | 30.0% | |
ATTCAAATCCTGCTTCAAAA+TGG | - | chr2.2:64985544-64985563 | MS.gene96216:CDS | 30.0% | |
GAGAGAAGAAAATTGAGTTT+GGG | + | chr2.2:64985334-64985353 | None:intergenic | 30.0% | |
TGAGAGAAGAAAATTGAGTT+TGG | + | chr2.2:64985335-64985354 | None:intergenic | 30.0% | |
TGAGTCTAAAGGTTTGATTA+AGG | - | chr2.2:64985972-64985991 | MS.gene96216:intron | 30.0% | |
TTCAAATCCTGCTTCAAAAT+GGG | - | chr2.2:64985545-64985564 | MS.gene96216:CDS | 30.0% | |
TTGGTGGAAGTAAATGAATT+AGG | - | chr2.2:64985649-64985668 | MS.gene96216:CDS | 30.0% | |
! | ACTCAATTTTCTTCTCTCAA+AGG | - | chr2.2:64985336-64985355 | MS.gene96216:CDS | 30.0% |
! | ATGAAGATTGTGTTACTGTT+AGG | + | chr2.2:64985051-64985070 | None:intergenic | 30.0% |
! | CTCAATTTTCTTCTCTCAAA+GGG | - | chr2.2:64985337-64985356 | MS.gene96216:CDS | 30.0% |
! | GGATCTAAAGAGAGAATTTT+TGG | + | chr2.2:64985295-64985314 | None:intergenic | 30.0% |
! | TGAAGATTGTGTTACTGTTA+GGG | + | chr2.2:64985050-64985069 | None:intergenic | 30.0% |
! | TTGAATTTTGTTGGAGAGTT+TGG | + | chr2.2:64985179-64985198 | None:intergenic | 30.0% |
! | TTTTTGTTGATCACATGGAT+TGG | - | chr2.2:64985860-64985879 | MS.gene96216:intron | 30.0% |
!! | CAATGAAAACAGTTGTTTTG+GGG | + | chr2.2:64985681-64985700 | None:intergenic | 30.0% |
!!! | TTGGGAAGAATGGTTTTATT+GGG | + | chr2.2:64985316-64985335 | None:intergenic | 30.0% |
!!! | TTTGGGAAGAATGGTTTTAT+TGG | + | chr2.2:64985317-64985336 | None:intergenic | 30.0% |
AACTGAATGTGAGGTTATTG+GGG | + | chr2.2:64985021-64985040 | None:intergenic | 35.0% | |
AATAATGAAAGGACTGAGTC+TGG | + | chr2.2:64985220-64985239 | None:intergenic | 35.0% | |
AATCAGAGTAACAAGACTGT+TGG | + | chr2.2:64984944-64984963 | None:intergenic | 35.0% | |
AATGCCTTCTCAAATCTTGA+AGG | + | chr2.2:64985631-64985650 | None:intergenic | 35.0% | |
ATGTGTATAAGAAATGGGGT+TGG | - | chr2.2:64985752-64985771 | MS.gene96216:intron | 35.0% | |
ATTAAGGATGCTAAATTGGC+TGG | - | chr2.2:64985988-64986007 | MS.gene96216:intron | 35.0% | |
GAAACTGAATGTGAGGTTAT+TGG | + | chr2.2:64985023-64985042 | None:intergenic | 35.0% | |
TCAAATCCTGCTTCAAAATG+GGG | - | chr2.2:64985546-64985565 | MS.gene96216:CDS | 35.0% | |
TTTGCTGAGTCTTGAGAAAA+GGG | - | chr2.2:64985918-64985937 | MS.gene96216:intron | 35.0% | |
! | AGACTCAGCAAAAGAAGTAT+TGG | + | chr2.2:64985910-64985929 | None:intergenic | 35.0% |
! | TTCAAGATTTGAGAAGGCAT+TGG | - | chr2.2:64985630-64985649 | MS.gene96216:CDS | 35.0% |
! | TTCTGGTGATGATTTGAACA+AGG | + | chr2.2:64985378-64985397 | None:intergenic | 35.0% |
! | TTTTGCTGAGTCTTGAGAAA+AGG | - | chr2.2:64985917-64985936 | MS.gene96216:intron | 35.0% |
!! | GACTCAGCAAAAGAAGTATT+GGG | + | chr2.2:64985909-64985928 | None:intergenic | 35.0% |
!! | GGTTGTGAAAGTGTGATTTT+GGG | + | chr2.2:64985113-64985132 | None:intergenic | 35.0% |
!! | GTTGTGAAAGTGTGATTTTG+GGG | + | chr2.2:64985112-64985131 | None:intergenic | 35.0% |
!! | TGGTTGTGAAAGTGTGATTT+TGG | + | chr2.2:64985114-64985133 | None:intergenic | 35.0% |
!! | TTTGATGAGAGTTGATAGCT+GGG | + | chr2.2:64985266-64985285 | None:intergenic | 35.0% |
!!! | CAGCATTTTTGAAGTATCCA+TGG | - | chr2.2:64985794-64985813 | MS.gene96216:intron | 35.0% |
!!! | GTCGTTGAGTTGAATTTTGT+TGG | + | chr2.2:64985188-64985207 | None:intergenic | 35.0% |
!!! | TTTTGATGAGAGTTGATAGC+TGG | + | chr2.2:64985267-64985286 | None:intergenic | 35.0% |
CATCAATCTTCCTTTCCCAA+AGG | + | chr2.2:64985735-64985754 | None:intergenic | 40.0% | |
GAAGCCTTCAAGATTTGAGA+AGG | - | chr2.2:64985624-64985643 | MS.gene96216:CDS | 40.0% | |
GAAGTTTGTGTATTGCTTCG+AGG | - | chr2.2:64986044-64986063 | MS.gene96216:intron | 40.0% | |
GAGATGAAGAAGAAAAGGGT+TGG | + | chr2.2:64985090-64985109 | None:intergenic | 40.0% | |
GGCATCTGTTCGTAAAATTG+AGG | - | chr2.2:64985825-64985844 | MS.gene96216:intron | 40.0% | |
TGGGGAGATGAAGAAGAAAA+GGG | + | chr2.2:64985094-64985113 | None:intergenic | 40.0% | |
TTGGGGAGATGAAGAAGAAA+AGG | + | chr2.2:64985095-64985114 | None:intergenic | 40.0% | |
! | GAAGTATCCATGGTGTATGT+TGG | - | chr2.2:64985804-64985823 | MS.gene96216:intron | 40.0% |
!! | AAGATTTGAGAAGGCATTGG+TGG | - | chr2.2:64985633-64985652 | MS.gene96216:CDS | 40.0% |
!!! | GGGTTTTGAAACTGAATGTG+AGG | + | chr2.2:64985030-64985049 | None:intergenic | 40.0% |
ACAGATGCCAACATACACCA+TGG | + | chr2.2:64985814-64985833 | None:intergenic | 45.0% | |
GAGAGTTTGGAAGCAGTTTC+TGG | + | chr2.2:64985166-64985185 | None:intergenic | 45.0% | |
! | GGGTGTTTTGCAAGCACAAT+AGG | + | chr2.2:64985889-64985908 | None:intergenic | 45.0% |
!! | GCAGTTTTTGAGAGATGCGA+TGG | + | chr2.2:64985488-64985507 | None:intergenic | 45.0% |
!!! | CAGGAACCCCATTTTGAAGC+AGG | + | chr2.2:64985555-64985574 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 64984930 | 64986149 | 64984930 | ID=MS.gene96216 |
chr2.2 | mRNA | 64984930 | 64986149 | 64984930 | ID=MS.gene96216.t1;Parent=MS.gene96216 |
chr2.2 | exon | 64986147 | 64986149 | 64986147 | ID=MS.gene96216.t1.exon1;Parent=MS.gene96216.t1 |
chr2.2 | CDS | 64986147 | 64986149 | 64986147 | ID=cds.MS.gene96216.t1;Parent=MS.gene96216.t1 |
chr2.2 | exon | 64984930 | 64985721 | 64984930 | ID=MS.gene96216.t1.exon2;Parent=MS.gene96216.t1 |
chr2.2 | CDS | 64984930 | 64985721 | 64984930 | ID=cds.MS.gene96216.t1;Parent=MS.gene96216.t1 |
Gene Sequence |
Protein sequence |