AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05604


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05604.t1 MTR_3g462790 97.492 319 6 2 1 318 5 322 0.0 649
MS.gene05604.t1 MTR_5g069710 66.154 325 81 9 1 318 5 307 2.56e-144 409
MS.gene05604.t1 MTR_7g067080 54.321 324 113 11 1 312 11 311 1.42e-104 308
MS.gene05604.t1 MTR_5g081860 63.285 207 60 5 18 222 11 203 3.58e-82 250
MS.gene05604.t1 MTR_1g111830 44.715 246 112 5 37 281 22 244 4.78e-59 190
MS.gene05604.t1 MTR_4g111975 46.667 210 75 4 39 217 8 211 4.07e-52 174
MS.gene05604.t1 MTR_8g063600 46.561 189 90 2 31 217 2 181 3.78e-51 171
MS.gene05604.t1 MTR_8g063870 41.304 184 85 3 36 217 5 167 3.94e-40 142
MS.gene05604.t1 MTR_2g100930 47.651 149 60 5 139 270 104 251 3.39e-33 125
MS.gene05604.t1 MTR_4g100630 60.000 100 38 1 118 217 71 168 5.04e-32 122
MS.gene05604.t1 MTR_6g092540 73.611 72 19 0 138 209 91 162 3.80e-31 119
MS.gene05604.t1 MTR_4g015130 76.119 67 16 0 154 220 3 69 1.66e-30 110
MS.gene05604.t1 MTR_8g101650 71.233 73 20 1 136 208 97 168 3.22e-30 116
MS.gene05604.t1 MTR_5g037080 68.966 87 25 1 131 217 91 175 4.46e-30 116
MS.gene05604.t1 MTR_4g107230 61.702 94 32 1 132 225 72 161 1.85e-28 111
MS.gene05604.t1 MTR_5g088010 50.980 102 44 3 114 212 32 130 7.85e-25 100
MS.gene05604.t1 MTR_0036s0260 64.179 67 24 0 144 210 28 94 8.72e-24 97.1
MS.gene05604.t1 MTR_1g033620 79.310 58 12 0 160 217 21 78 1.06e-23 97.8
MS.gene05604.t1 MTR_3g104370 58.025 81 27 2 141 214 88 168 1.86e-23 96.7
MS.gene05604.t1 MTR_2g090305 64.179 67 24 0 144 210 28 94 5.01e-23 94.4
MS.gene05604.t1 MTR_1g033600 37.313 134 77 2 31 158 4 136 6.30e-23 92.8
MS.gene05604.t1 MTR_5g027570 61.333 75 26 2 140 212 88 161 1.47e-22 94.4
MS.gene05604.t1 MTR_5g088060 65.714 70 20 2 146 212 274 342 1.78e-22 97.8
MS.gene05604.t1 MTR_5g488160 65.714 70 20 2 146 212 274 342 1.78e-22 97.8
MS.gene05604.t1 MTR_5g075760 36.000 175 88 5 31 200 5 160 2.84e-22 93.2
MS.gene05604.t1 MTR_5g075790 34.737 190 91 6 16 200 7 168 4.09e-22 92.8
MS.gene05604.t1 MTR_5g027550 60.526 76 27 1 140 212 73 148 2.62e-20 88.2
MS.gene05604.t1 MTR_5g020170 50.000 68 34 0 34 101 14 81 1.27e-19 82.4
MS.gene05604.t1 MTR_3g116720 57.576 66 28 0 39 104 16 81 1.82e-19 81.6
MS.gene05604.t1 MTR_1g022290 52.857 70 33 0 36 105 4 73 2.52e-19 81.6
MS.gene05604.t1 MTR_8g077380 52.778 72 33 1 36 107 2 72 5.23e-19 80.1
MS.gene05604.t1 MTR_8g077390 52.778 72 33 1 36 107 2 72 5.23e-19 80.1
MS.gene05604.t1 MTR_8g077360 54.412 68 30 1 36 103 2 68 5.26e-19 80.1
MS.gene05604.t1 MTR_3g111880 48.052 77 40 0 36 112 4 80 8.45e-19 80.1
MS.gene05604.t1 MTR_1g048660 56.250 64 28 0 145 208 13 76 1.14e-18 79.7
MS.gene05604.t1 MTR_6g004250 49.254 67 34 0 36 102 7 73 4.65e-16 72.4
MS.gene05604.t1 MTR_5g020540 55.738 61 26 1 39 99 4 63 8.18e-16 71.2
MS.gene05604.t1 MTR_3g013440 50.704 71 34 1 32 101 3 73 6.74e-15 69.7
MS.gene05604.t1 MTR_8g077420 50.725 69 32 2 39 107 5 71 1.17e-14 68.2
MS.gene05604.t1 MTR_3g070110 50.667 75 30 1 146 213 97 171 3.09e-14 70.9
MS.gene05604.t1 MTR_7g089210 52.308 65 31 0 43 107 16 80 3.16e-14 67.8
MS.gene05604.t1 MTR_1g083180 52.113 71 29 2 146 212 63 132 2.12e-13 68.2
MS.gene05604.t1 MTR_6g043480 53.191 47 22 0 144 190 107 153 1.09e-11 63.9
MS.gene05604.t1 MTR_8g072990 43.056 72 36 2 141 208 97 167 1.48e-11 63.9
MS.gene05604.t1 MTR_3g111920 41.667 72 42 0 39 110 3 74 1.60e-11 60.1
MS.gene05604.t1 MTR_6g043490 53.191 47 22 0 144 190 107 153 2.06e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05604.t1 AT5G58900 62.869 237 66 6 1 230 1 222 1.99e-97 289
MS.gene05604.t1 AT2G38090 61.883 223 58 4 1 213 5 210 9.09e-95 283
MS.gene05604.t1 AT5G05790 63.874 191 62 3 35 224 27 211 8.27e-79 241
MS.gene05604.t1 AT5G05790 63.874 191 62 3 35 224 27 211 8.27e-79 241
MS.gene05604.t1 AT3G11280 54.583 240 84 6 39 266 33 259 5.12e-77 236
MS.gene05604.t1 AT3G11280 54.583 240 84 6 39 266 33 259 5.12e-77 236
MS.gene05604.t1 AT5G01200 57.843 204 66 5 23 213 19 215 2.55e-73 227
MS.gene05604.t1 AT5G08520 51.075 186 90 1 33 217 6 191 6.55e-58 189
MS.gene05604.t1 AT1G49010 47.208 197 79 3 39 212 8 202 6.54e-51 171
MS.gene05604.t1 AT5G04760 49.162 179 79 3 36 214 3 169 1.76e-50 167
MS.gene05604.t1 AT5G23650 38.866 247 129 5 33 275 7 235 1.61e-42 150
MS.gene05604.t1 AT5G47390 59.140 93 38 0 124 216 76 168 8.71e-32 122
MS.gene05604.t1 AT3G10580 36.161 224 108 8 39 250 8 208 8.37e-31 117
MS.gene05604.t1 AT3G10580 36.161 224 108 8 39 250 8 208 9.73e-31 117
MS.gene05604.t1 AT4G09450 40.116 172 82 3 38 209 6 156 2.19e-29 111
MS.gene05604.t1 AT5G61620 54.206 107 45 1 114 220 82 184 7.04e-29 113
MS.gene05604.t1 AT5G56840 57.609 92 36 2 130 220 79 168 8.32e-28 108
MS.gene05604.t1 AT3G16350 58.559 111 35 3 124 233 125 225 2.57e-27 110
MS.gene05604.t1 AT1G70000 68.354 79 23 1 131 209 87 163 3.61e-27 107
MS.gene05604.t1 AT1G70000 68.354 79 23 1 131 209 87 163 3.61e-27 107
MS.gene05604.t1 AT1G74840 58.654 104 41 1 139 240 91 194 4.24e-26 103
MS.gene05604.t1 AT1G74840 58.654 104 41 1 139 240 91 194 5.84e-26 104
MS.gene05604.t1 AT1G19000 60.465 86 34 0 140 225 98 183 3.53e-25 102
MS.gene05604.t1 AT1G19000 60.465 86 34 0 140 225 98 183 3.53e-25 102
MS.gene05604.t1 AT1G75250 54.667 75 34 0 29 103 2 76 3.97e-21 86.7
MS.gene05604.t1 AT1G75250 54.667 75 34 0 29 103 2 76 6.41e-21 87.0
MS.gene05604.t1 AT3G10590 37.017 181 98 7 36 209 4 175 8.30e-20 86.3
MS.gene05604.t1 AT2G21650 54.545 66 30 0 39 104 14 79 1.80e-17 77.0
MS.gene05604.t1 AT4G39250 46.377 69 37 0 39 107 14 82 2.80e-16 73.6
MS.gene05604.t1 AT1G19510 55.738 61 27 0 43 103 16 76 1.03e-15 72.0
MS.gene05604.t1 AT2G18328 51.613 62 30 0 43 104 15 76 2.92e-12 62.0
MS.gene05604.t1 AT4G36570 61.364 44 17 0 39 82 12 55 6.27e-11 57.8

Find 58 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCATGAGTCTTCTTATTT+TGG 0.078101 3.2:+53734762 MS.gene05604:CDS
ATTTGACAGGTTATTTCTAT+TGG 0.210653 3.2:+53734338 MS.gene05604:intron
GGAGTTAATAATAACTCTTA+TGG 0.241432 3.2:+53734702 MS.gene05604:CDS
TATTTCATCAGACAACTTTC+AGG 0.257079 3.2:+53734456 MS.gene05604:CDS
TTAGATTGGGTGAATTCTTC+TGG 0.292652 3.2:+53733709 MS.gene05604:CDS
TTCACCCAATCTAAGGTAAA+AGG 0.308169 3.2:-53733700 None:intergenic
GCTGGTTTGGTTCCAATTCC+TGG 0.315843 3.2:+53733655 MS.gene05604:CDS
GGTGCATGAGGGTGAGAATT+TGG 0.327156 3.2:-53733394 None:intergenic
CCTTTCTTCCTTTCCTGATC+AGG 0.333627 3.2:-53733784 None:intergenic
TTTGACAGGTTATTTCTATT+GGG 0.339731 3.2:+53734339 MS.gene05604:intron
AGTGGAAAGAGAGGCTCTTC+TGG 0.344816 3.2:+53733754 MS.gene05604:CDS
ATCTTACTTGTGTTCTTCTT+CGG 0.354438 3.2:-53733818 None:intergenic
CTCTTGGTTTCTTCTGAAGA+TGG 0.361561 3.2:-53734552 None:intergenic
GCATTAACAGGAGCACAAAA+TGG 0.365638 3.2:+53733473 MS.gene05604:CDS
AGAAGAATTCACCCAATCTA+AGG 0.374549 3.2:-53733707 None:intergenic
ACATCAACAACACTCTTTCC+AGG 0.376605 3.2:-53733586 None:intergenic
TACTTGTTCATAATCATGTT+TGG 0.382661 3.2:-53734585 None:intergenic
TGCTCTTGCAGTTTATGATA+AGG 0.387222 3.2:+53733525 MS.gene05604:CDS
ATTGTAGCAATAGCATTAAC+AGG 0.398247 3.2:+53733461 MS.gene05604:CDS
ATTTCAACAATACCAACAAT+TGG 0.398347 3.2:+53733428 MS.gene05604:CDS
GATGAATCAGTATAAGGAAT+TGG 0.401455 3.2:+53733609 MS.gene05604:CDS
GTAGTACTATAACCAGGAAT+TGG 0.407318 3.2:-53733667 None:intergenic
GTTGTTGAGAAGATTGCATT+TGG 0.408588 3.2:-53734809 None:intergenic
TCAAACAATTTGTTCTCTGC+AGG 0.426400 3.2:-53733499 None:intergenic
GTGAATTCTTCTGGTTATGA+TGG 0.427738 3.2:+53733718 MS.gene05604:CDS
TTGTGTTCTTCTTCGGTCCA+TGG 0.429989 3.2:-53733811 None:intergenic
GATGTTTGTAATATAGAAGC+TGG 0.431912 3.2:+53733637 MS.gene05604:CDS
AAAAGTATGGAAAAGGTGAT+TGG 0.434556 3.2:+53734367 MS.gene05604:CDS
TTGTAATATAGAAGCTGGTT+TGG 0.450084 3.2:+53733642 MS.gene05604:CDS
GAGTTATTATTAACTCCATA+AGG 0.453193 3.2:-53734696 None:intergenic
TGATGTGATGAATCAGTATA+AGG 0.454237 3.2:+53733603 MS.gene05604:CDS
TTCTGGTAGATCTCCTGATC+AGG 0.477520 3.2:+53733771 MS.gene05604:CDS
GTTTGGTGAAGATGATCTCT+TGG 0.477704 3.2:-53734568 None:intergenic
CAAGGAACTTTGTGATCACT+AGG 0.491493 3.2:+53734400 MS.gene05604:CDS
TTGAATGCTGTCATAGTAGC+TGG 0.523867 3.2:-53734645 None:intergenic
TCTTATGGATTTAAAATGCA+AGG 0.530791 3.2:+53734717 MS.gene05604:CDS
GCTACCTTATGCCACCGATC+CGG 0.536074 3.2:-53733553 None:intergenic
AGAGGATTTAGTGGAAAGAG+AGG 0.538143 3.2:+53733745 MS.gene05604:CDS
CCTGATCAGGAAAGGAAGAA+AGG 0.540469 3.2:+53733784 MS.gene05604:CDS
AAGGTAGCTGCAATAATCCC+TGG 0.549084 3.2:+53733568 MS.gene05604:CDS
GCATGGCTAGCTACTTGTGT+TGG 0.551417 3.2:-53734426 None:intergenic
ATGAAAACTTGTTCATGTGA+TGG 0.562419 3.2:-53734669 None:intergenic
CATCAACAACACTCTTTCCA+GGG 0.564214 3.2:-53733585 None:intergenic
TACGCCGGATCGGTGGCATA+AGG 0.566659 3.2:+53733549 MS.gene05604:CDS
CTCAGAAGTGGTGTTAGCAG+TGG 0.576504 3.2:-53734610 None:intergenic
TGATGAAATATTTCTGAGCA+TGG 0.587728 3.2:-53734443 None:intergenic
ATGATAAGGATACGCCGGAT+CGG 0.588112 3.2:+53733539 MS.gene05604:CDS
CTGAAAATGCATCTCAGAAG+TGG 0.589832 3.2:-53734622 None:intergenic
AAATAAGAAGACTCATGAAG+AGG 0.592849 3.2:-53734759 None:intergenic
GTGATTGGAGAAACATATCA+AGG 0.596845 3.2:+53734382 MS.gene05604:CDS
GTAGATCTCCTGATCAGGAA+AGG 0.600023 3.2:+53733776 MS.gene05604:CDS
TTCATCAGACAACTTTCAGG+AGG 0.604647 3.2:+53734459 MS.gene05604:CDS
AAAGGAAGAAAGGTGTGCCA+TGG 0.605391 3.2:+53733794 MS.gene05604:CDS
ATAAGGATACGCCGGATCGG+TGG 0.605758 3.2:+53733542 MS.gene05604:CDS
TGGACCTCAGACACAAAACA+TGG 0.622490 3.2:+53734782 MS.gene05604:CDS
AGTTTATGATAAGGATACGC+CGG 0.649185 3.2:+53733534 MS.gene05604:CDS
TTTGAACAAATGGTGCATGA+GGG 0.670004 3.2:-53733405 None:intergenic
GCAGCAGTAGTACTATAACC+AGG 0.674867 3.2:-53733673 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTATTTAAGTTGTTGA+AGG + chr3.2:53734280-53734299 MS.gene05604:intron 15.0%
!!! TATTTATTTAAGTTGTTGAA+GGG + chr3.2:53734281-53734300 MS.gene05604:intron 15.0%
!! CATAAACTTTAAATTACATC+CGG - chr3.2:53734113-53734132 None:intergenic 20.0%
!! GATTATGAAAATAATTTGAC+AGG + chr3.2:53734325-53734344 MS.gene05604:intron 20.0%
!!! TTGTTGAAATTTTGAACAAA+TGG - chr3.2:53733418-53733437 None:intergenic 20.0%
! ATCTGTAGTTATTAAGAGTT+AGG + chr3.2:53734169-53734188 MS.gene05604:intron 25.0%
! ATTTCAACAATACCAACAAT+TGG + chr3.2:53733428-53733447 MS.gene05604:CDS 25.0%
! CTTAACTAATAACTACCAAT+AGG - chr3.2:53734200-53734219 None:intergenic 25.0%
! GAGTTATTATTAACTCCATA+AGG - chr3.2:53734699-53734718 None:intergenic 25.0%
! GGAGTTAATAATAACTCTTA+TGG + chr3.2:53734702-53734721 MS.gene05604:CDS 25.0%
! TAAAGTTTATGTATGAACCT+AGG + chr3.2:53734122-53734141 MS.gene05604:intron 25.0%
! TACTTGTTCATAATCATGTT+TGG - chr3.2:53734588-53734607 None:intergenic 25.0%
!! GATTTTACTGTTTGGTTATT+TGG + chr3.2:53733918-53733937 MS.gene05604:intron 25.0%
!! TATGTGAAGATTTTACTGTT+TGG + chr3.2:53733910-53733929 MS.gene05604:intron 25.0%
!! TCTTATGGATTTAAAATGCA+AGG + chr3.2:53734717-53734736 MS.gene05604:CDS 25.0%
!!! ATTTGACAGGTTATTTCTAT+TGG + chr3.2:53734338-53734357 MS.gene05604:intron 25.0%
!!! TTTGACAGGTTATTTCTATT+GGG + chr3.2:53734339-53734358 MS.gene05604:intron 25.0%
AAATAAGAAGACTCATGAAG+AGG - chr3.2:53734762-53734781 None:intergenic 30.0%
AAGAGTTAGGTATTTCCTAT+TGG + chr3.2:53734182-53734201 MS.gene05604:intron 30.0%
ATCTTACTTGTGTTCTTCTT+CGG - chr3.2:53733821-53733840 None:intergenic 30.0%
ATCTTCCAAAAACCAATTGT+TGG - chr3.2:53733443-53733462 None:intergenic 30.0%
ATTGTAGCAATAGCATTAAC+AGG + chr3.2:53733461-53733480 MS.gene05604:CDS 30.0%
GATGAATCAGTATAAGGAAT+TGG + chr3.2:53733609-53733628 MS.gene05604:CDS 30.0%
GATGTTTGTAATATAGAAGC+TGG + chr3.2:53733637-53733656 MS.gene05604:CDS 30.0%
TATTTCATCAGACAACTTTC+AGG + chr3.2:53734456-53734475 MS.gene05604:CDS 30.0%
TGATGTGATGAATCAGTATA+AGG + chr3.2:53733603-53733622 MS.gene05604:CDS 30.0%
TTGCTTATTGCTTATTGCTT+TGG + chr3.2:53733860-53733879 MS.gene05604:intron 30.0%
TTGTAATATAGAAGCTGGTT+TGG + chr3.2:53733642-53733661 MS.gene05604:CDS 30.0%
! AAAAGTATGGAAAAGGTGAT+TGG + chr3.2:53734367-53734386 MS.gene05604:CDS 30.0%
! ATGAAAACTTGTTCATGTGA+TGG - chr3.2:53734672-53734691 None:intergenic 30.0%
! TGATGAAATATTTCTGAGCA+TGG - chr3.2:53734446-53734465 None:intergenic 30.0%
! TTCACCTTTTACCTTAGATT+GGG + chr3.2:53733696-53733715 MS.gene05604:CDS 30.0%
! TTTTGTCAAAATCACGATGA+CGG + chr3.2:53734035-53734054 MS.gene05604:intron 30.0%
!! CTTCATGAGTCTTCTTATTT+TGG + chr3.2:53734762-53734781 MS.gene05604:CDS 30.0%
!!! CAATACCAACAATTGGTTTT+TGG + chr3.2:53733435-53733454 MS.gene05604:CDS 30.0%
AACTGATATCAGTGCATCTT+TGG + chr3.2:53733961-53733980 MS.gene05604:intron 35.0%
ACTTTAAATTACATCCGGTC+AGG - chr3.2:53734108-53734127 None:intergenic 35.0%
AGAAGAATTCACCCAATCTA+AGG - chr3.2:53733710-53733729 None:intergenic 35.0%
AGTTTATGATAAGGATACGC+CGG + chr3.2:53733534-53733553 MS.gene05604:CDS 35.0%
CTATTGGGTCTGAAAAAGTA+TGG + chr3.2:53734354-53734373 MS.gene05604:CDS 35.0%
GTAGTACTATAACCAGGAAT+TGG - chr3.2:53733670-53733689 None:intergenic 35.0%
GTGATTGGAGAAACATATCA+AGG + chr3.2:53734382-53734401 MS.gene05604:CDS 35.0%
GTTGTTGAGAAGATTGCATT+TGG - chr3.2:53734812-53734831 None:intergenic 35.0%
GTTTGGATTGACGGTTAATT+TGG - chr3.2:53734080-53734099 None:intergenic 35.0%
TGCTCTTGCAGTTTATGATA+AGG + chr3.2:53733525-53733544 MS.gene05604:CDS 35.0%
TTAGATTGGGTGAATTCTTC+TGG + chr3.2:53733709-53733728 MS.gene05604:CDS 35.0%
TTATGTATGAACCTAGGAGT+TGG + chr3.2:53734128-53734147 MS.gene05604:intron 35.0%
TTTGAACAAATGGTGCATGA+GGG - chr3.2:53733408-53733427 None:intergenic 35.0%
! AAAACCATGTTTTGTGTCTG+AGG - chr3.2:53734789-53734808 None:intergenic 35.0%
! CAAGTTTTCATGTCTCCTTA+TGG + chr3.2:53734681-53734700 MS.gene05604:CDS 35.0%
! CTTCACCTTTTACCTTAGAT+TGG + chr3.2:53733695-53733714 MS.gene05604:CDS 35.0%
! GGTCTGAAAAAGTATGGAAA+AGG + chr3.2:53734360-53734379 MS.gene05604:CDS 35.0%
! GTGAATTCTTCTGGTTATGA+TGG + chr3.2:53733718-53733737 MS.gene05604:CDS 35.0%
! TCAAACAATTTGTTCTCTGC+AGG - chr3.2:53733502-53733521 None:intergenic 35.0%
! TTCACCCAATCTAAGGTAAA+AGG - chr3.2:53733703-53733722 None:intergenic 35.0%
! TTTTGAACAAATGGTGCATG+AGG - chr3.2:53733409-53733428 None:intergenic 35.0%
!!! GATGGTTTTAGAGGATTTAG+TGG + chr3.2:53733736-53733755 MS.gene05604:CDS 35.0%
!!! TCTGGTTATGATGGTTTTAG+AGG + chr3.2:53733727-53733746 MS.gene05604:CDS 35.0%
ACATCAACAACACTCTTTCC+AGG - chr3.2:53733589-53733608 None:intergenic 40.0%
AGAGGATTTAGTGGAAAGAG+AGG + chr3.2:53733745-53733764 MS.gene05604:CDS 40.0%
ATTTCACTTCACCAACTCCT+AGG - chr3.2:53734142-53734161 None:intergenic 40.0%
CAAGGAACTTTGTGATCACT+AGG + chr3.2:53734400-53734419 MS.gene05604:CDS 40.0%
CATCAACAACACTCTTTCCA+GGG - chr3.2:53733588-53733607 None:intergenic 40.0%
CTGAAAATGCATCTCAGAAG+TGG - chr3.2:53734625-53734644 None:intergenic 40.0%
TTCATCAGACAACTTTCAGG+AGG + chr3.2:53734459-53734478 MS.gene05604:CDS 40.0%
TTGAATGCTGTCATAGTAGC+TGG - chr3.2:53734648-53734667 None:intergenic 40.0%
! CTCTTGGTTTCTTCTGAAGA+TGG - chr3.2:53734555-53734574 None:intergenic 40.0%
! GCATTAACAGGAGCACAAAA+TGG + chr3.2:53733473-53733492 MS.gene05604:CDS 40.0%
! GTTTGGTGAAGATGATCTCT+TGG - chr3.2:53734571-53734590 None:intergenic 40.0%
AAGGTAGCTGCAATAATCCC+TGG + chr3.2:53733568-53733587 MS.gene05604:CDS 45.0%
AATCCAAACATGCACCTGAC+CGG + chr3.2:53734091-53734110 MS.gene05604:intron 45.0%
ATGATAAGGATACGCCGGAT+CGG + chr3.2:53733539-53733558 MS.gene05604:CDS 45.0%
CAGGTGCATGTTTGGATTGA+CGG - chr3.2:53734089-53734108 None:intergenic 45.0%
CCTGATCAGGAAAGGAAGAA+AGG + chr3.2:53733784-53733803 MS.gene05604:CDS 45.0%
CCTTTCTTCCTTTCCTGATC+AGG - chr3.2:53733787-53733806 None:intergenic 45.0%
GCAGCAGTAGTACTATAACC+AGG - chr3.2:53733676-53733695 None:intergenic 45.0%
GTAGATCTCCTGATCAGGAA+AGG + chr3.2:53733776-53733795 MS.gene05604:CDS 45.0%
TGGACCTCAGACACAAAACA+TGG + chr3.2:53734782-53734801 MS.gene05604:CDS 45.0%
TTCTGGTAGATCTCCTGATC+AGG + chr3.2:53733771-53733790 MS.gene05604:CDS 45.0%
TTGTGTTCTTCTTCGGTCCA+TGG - chr3.2:53733814-53733833 None:intergenic 45.0%
! AAAGGAAGAAAGGTGTGCCA+TGG + chr3.2:53733794-53733813 MS.gene05604:CDS 45.0%
!!! ATTTATTTAAATATTTTTGA+GGG + chr3.2:53734253-53734272 MS.gene05604:intron 5.0%
!!! TATTTATTTAAATATTTTTG+AGG + chr3.2:53734252-53734271 MS.gene05604:intron 5.0%
AGTGGAAAGAGAGGCTCTTC+TGG + chr3.2:53733754-53733773 MS.gene05604:CDS 50.0%
GGTGCATGAGGGTGAGAATT+TGG - chr3.2:53733397-53733416 None:intergenic 50.0%
! CTCAGAAGTGGTGTTAGCAG+TGG - chr3.2:53734613-53734632 None:intergenic 50.0%
! GCATGGCTAGCTACTTGTGT+TGG - chr3.2:53734429-53734448 None:intergenic 50.0%
!! GCTGGTTTGGTTCCAATTCC+TGG + chr3.2:53733655-53733674 MS.gene05604:CDS 50.0%
ATAAGGATACGCCGGATCGG+TGG + chr3.2:53733542-53733561 MS.gene05604:CDS 55.0%
CATCCGGTCAGGTGCATGTT+TGG - chr3.2:53734097-53734116 None:intergenic 55.0%
GCTACCTTATGCCACCGATC+CGG - chr3.2:53733556-53733575 None:intergenic 55.0%
TACGCCGGATCGGTGGCATA+AGG + chr3.2:53733549-53733568 MS.gene05604:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 53733379 53734848 53733379 ID=MS.gene05604
chr3.2 mRNA 53733379 53734848 53733379 ID=MS.gene05604.t1;Parent=MS.gene05604
chr3.2 exon 53733379 53733833 53733379 ID=MS.gene05604.t1.exon1;Parent=MS.gene05604.t1
chr3.2 CDS 53733379 53733833 53733379 ID=cds.MS.gene05604.t1;Parent=MS.gene05604.t1
chr3.2 exon 53734347 53734848 53734347 ID=MS.gene05604.t1.exon2;Parent=MS.gene05604.t1
chr3.2 CDS 53734347 53734848 53734347 ID=cds.MS.gene05604.t1;Parent=MS.gene05604.t1
Gene Sequence

>MS.gene05604

ATGGAAATTCTTTCACCAAATTCTCACCCTCATGCACCATTTGTTCAAAATTTCAACAATACCAACAATTGGTTTTTGGAAGATTGTAGCAATAGCATTAACAGGAGCACAAAATGGACTCCTGCAGAGAACAAATTGTTTGAAAATGCTCTTGCAGTTTATGATAAGGATACGCCGGATCGGTGGCATAAGGTAGCTGCAATAATCCCTGGAAAGAGTGTTGTTGATGTGATGAATCAGTATAAGGAATTGGAAGTTGATGTTTGTAATATAGAAGCTGGTTTGGTTCCAATTCCTGGTTATAGTACTACTGCTGCTTCACCTTTTACCTTAGATTGGGTGAATTCTTCTGGTTATGATGGTTTTAGAGGATTTAGTGGAAAGAGAGGCTCTTCTGGTAGATCTCCTGATCAGGAAAGGAAGAAAGGTGTGCCATGGACCGAAGAAGAACACAAGTAAGATAATCACTTTTATTCAATTATTGCTTATTGCTTATTGCTTTGGTTCAATTTGTGTGTGTTTGTGTGACAATATGTGAAGATTTTACTGTTTGGTTATTTGGAATGTAAATCAGTTTCTTGAAACTGATATCAGTGCATCTTTGGAATCACAGTGAGTTTGACGAAATTACAGTGACAAATTCTTTAAAATGCAGCTTTTGTCAAAATCACGATGACGGCTAACAAAGCATCATTCTGCCAAATTAACCGTCAATCCAAACATGCACCTGACCGGATGTAATTTAAAGTTTATGTATGAACCTAGGAGTTGGTGAAGTGAAATCATGTTTATCTGTAGTTATTAAGAGTTAGGTATTTCCTATTGGTAGTTATTAGTTAAGTCAAAATTATTTCACAAAAAGTACATATATGATATTTATTTAAATATTTTTGAGGGAATGATATTTATTTAAGTTGTTGAAGGGTTAATTAAACTTTTTGATGATGATTATGAAAATAATTTGACAGGTTATTTCTATTGGGTCTGAAAAAGTATGGAAAAGGTGATTGGAGAAACATATCAAGGAACTTTGTGATCACTAGGACACCAACACAAGTAGCTAGCCATGCTCAGAAATATTTCATCAGACAACTTTCAGGAGGCAAAGACAAAAGAAGAGCTAGCATTCATGACATAACAACAGTTAATCTCACAGAAGTTTCTAGAACTTCTCCATCTTCAGAAGAAACCAAGAGATCATCTTCACCAAACATGATTATGAACAAGTATTCCACTGCTAACACCACTTCTGAGATGCATTTTCAGCCAGCTACTATGACAGCATTCAATCCATCACATGAACAAGTTTTCATGTCTCCTTATGGAGTTAATAATAACTCTTATGGATTTAAAATGCAAGGTCAAAATATGCATAGAAATCCTCTTCATGAGTCTTCTTATTTTGGACCTCAGACACAAAACATGGTTTTCCAAATGCAATCTTCTCAACAACACTATTCACATGCATGA

Protein sequence

>MS.gene05604.t1

MEILSPNSHPHAPFVQNFNNTNNWFLEDCSNSINRSTKWTPAENKLFENALAVYDKDTPDRWHKVAAIIPGKSVVDVMNQYKELEVDVCNIEAGLVPIPGYSTTAASPFTLDWVNSSGYDGFRGFSGKRGSSGRSPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTEVSRTSPSSEETKRSSSPNMIMNKYSTANTTSEMHFQPATMTAFNPSHEQVFMSPYGVNNNSYGFKMQGQNMHRNPLHESSYFGPQTQNMVFQMQSSQQHYSHA