Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96286.t1 | XP_003610521.1 | 96.2 | 546 | 21 | 0 | 1 | 546 | 1 | 546 | 2.00E-261 | 911.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96286.t1 | Q14684 | 31.4 | 255 | 148 | 8 | 1 | 239 | 1 | 244 | 9.6e-26 | 119.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96286.t1 | G7JKJ1 | 96.2 | 546 | 21 | 0 | 1 | 546 | 1 | 546 | 1.5e-261 | 911.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052717 | MS.gene96286 | 0.813674 | 2.27E-51 | -1.69E-46 |
| MS.gene053122 | MS.gene96286 | 0.812032 | 5.20E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene96286 | 0.814063 | 1.86E-51 | -1.69E-46 |
| MS.gene05689 | MS.gene96286 | 0.800042 | 1.73E-48 | -1.69E-46 |
| MS.gene059900 | MS.gene96286 | -0.819168 | 1.34E-52 | -1.69E-46 |
| MS.gene059901 | MS.gene96286 | -0.826305 | 2.92E-54 | -1.69E-46 |
| MS.gene059935 | MS.gene96286 | 0.818694 | 1.72E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96286.t1 | MTR_4g133100 | 97.436 | 546 | 14 | 0 | 1 | 546 | 1 | 546 | 0.0 | 1069 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96286.t1 | AT5G20600 | 49.257 | 538 | 242 | 11 | 7 | 540 | 18 | 528 | 7.45e-159 | 464 |
Find 118 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCTTCTCAAACTGCTTT+TGG | 0.155542 | 8.4:+1334876 | None:intergenic |
| GAATAAGAATTCGTGGGATT+TGG | 0.238732 | 8.4:-1335674 | MS.gene96286:CDS |
| GAGAAGGATGCTGTTAATTC+AGG | 0.240790 | 8.4:-1335211 | MS.gene96286:CDS |
| TGATGGTGATGTTGTGAATT+TGG | 0.255461 | 8.4:-1335353 | MS.gene96286:CDS |
| CTGTTTGAGTGCACTTCCTC+TGG | 0.264276 | 8.4:+1334577 | None:intergenic |
| TCCAAAACACTCACCTTAAC+TGG | 0.291434 | 8.4:+1335523 | None:intergenic |
| TTCTGTTGACAAAGTGAAAA+AGG | 0.295604 | 8.4:-1335053 | MS.gene96286:CDS |
| TTCCCTAACAAAACCTTATC+AGG | 0.309806 | 8.4:+1335460 | None:intergenic |
| AGAAACATCCCCGGCAGCTT+TGG | 0.340486 | 8.4:+1334805 | None:intergenic |
| TCCAGTTAAGGTGAGTGTTT+TGG | 0.350073 | 8.4:-1335524 | MS.gene96286:CDS |
| AAGAATGATGCCAATGAAAA+TGG | 0.357703 | 8.4:-1334950 | MS.gene96286:CDS |
| TCAACAATGGGAACCAAATC+TGG | 0.360558 | 8.4:+1335139 | None:intergenic |
| CAGAGGAAGTGCACTCAAAC+AGG | 0.360720 | 8.4:-1334576 | MS.gene96286:CDS |
| GCTTCGAAGTTGTTTGAGTT+AGG | 0.360759 | 8.4:-1335304 | MS.gene96286:CDS |
| GGTTGCTGCGGAAGCAGGTT+TGG | 0.366574 | 8.4:-1334858 | MS.gene96286:CDS |
| TCCTCACTGTGCGTCGTGAA+TGG | 0.372398 | 8.4:-1335774 | MS.gene96286:CDS |
| GAAACATCCCCGGCAGCTTT+GGG | 0.374968 | 8.4:+1334806 | None:intergenic |
| TGGAGAGGCATCTCTCTGAT+TGG | 0.378842 | 8.4:+1334539 | None:intergenic |
| GAAGAAATTAAGATCTCTTT+CGG | 0.384532 | 8.4:-1334444 | MS.gene96286:CDS |
| AGATGAATTCTGCTGAGAAC+GGG | 0.385045 | 8.4:-1334976 | MS.gene96286:CDS |
| GCGGGTAGAAGGACAATAAT+TGG | 0.391294 | 8.4:-1334491 | MS.gene96286:CDS |
| TGATGAGGAAGTGCCAGATT+TGG | 0.392532 | 8.4:-1335152 | MS.gene96286:CDS |
| CGATTCCTGATTCTGTTGAT+CGG | 0.397418 | 8.4:-1335177 | MS.gene96286:CDS |
| TCATCCCGATCAACAGAATC+AGG | 0.404632 | 8.4:+1335172 | None:intergenic |
| AAGAAGAGTGGTGGGGATGA+AGG | 0.406491 | 8.4:-1335379 | MS.gene96286:CDS |
| GATGGTGATGTTGTGAATTT+GGG | 0.412750 | 8.4:-1335352 | MS.gene96286:CDS |
| GGCATCTCTCTGATTGGACC+TGG | 0.413742 | 8.4:+1334545 | None:intergenic |
| GATGCCTCTCCAAAACAAAA+AGG | 0.414704 | 8.4:-1334528 | MS.gene96286:CDS |
| TAAAGTGATTGTGAATTGTT+TGG | 0.417412 | 8.4:-1335644 | MS.gene96286:CDS |
| CTATTCCCCTGTACACAATC+AGG | 0.417890 | 8.4:+1335274 | None:intergenic |
| GGAACAATTGCGTTGGGGAT+GGG | 0.418398 | 8.4:-1335331 | MS.gene96286:CDS |
| TTCTGCTCCTGATTGTGTAC+AGG | 0.419267 | 8.4:-1335281 | MS.gene96286:CDS |
| GGGAACAATTGCGTTGGGGA+TGG | 0.439850 | 8.4:-1335332 | MS.gene96286:CDS |
| TTGGCATCTTCTTCAGGAAG+TGG | 0.441094 | 8.4:+1335934 | None:intergenic |
| GAGAAGGTTGCTGCGGAAGC+AGG | 0.443225 | 8.4:-1334863 | MS.gene96286:CDS |
| GATTCCTGATTCTGTTGATC+GGG | 0.443920 | 8.4:-1335176 | MS.gene96286:CDS |
| AACTGAAGAAGGCGGGTAGA+AGG | 0.445914 | 8.4:-1334502 | MS.gene96286:CDS |
| CGCTTATGAATAAGAATTCG+TGG | 0.449006 | 8.4:-1335681 | MS.gene96286:CDS |
| CTCAAGCTCTGAGGAGGTAA+AGG | 0.457744 | 8.4:+1334620 | None:intergenic |
| AATCAGTGAACGGCCAGCTT+CGG | 0.458294 | 8.4:+1336041 | None:intergenic |
| AGAAGGATGCTGTTAATTCA+GGG | 0.458665 | 8.4:-1335210 | MS.gene96286:CDS |
| TCAAACTCGTCTTAAAATCA+TGG | 0.461781 | 8.4:-1335975 | MS.gene96286:CDS |
| GGTGGGGATGAAGGTGGTGA+TGG | 0.462518 | 8.4:-1335370 | MS.gene96286:CDS |
| GACTGTGTGGCTTCCATACC+AGG | 0.463504 | 8.4:+1334642 | None:intergenic |
| GATAAGTTGTTGCAAGGAAA+AGG | 0.468498 | 8.4:-1335598 | MS.gene96286:CDS |
| TGTTTGAGTGCACTTCCTCT+GGG | 0.473485 | 8.4:+1334578 | None:intergenic |
| CTCACCTTAACTGGAAGAAA+AGG | 0.474368 | 8.4:+1335532 | None:intergenic |
| GCGACAAACGCATCCGAAGC+TGG | 0.474678 | 8.4:-1336054 | MS.gene96286:CDS |
| TGTTAATTATCATGTTGCTT+CGG | 0.480010 | 8.4:-1335575 | MS.gene96286:CDS |
| TTGTTAGGGAAGATTAAGAT+TGG | 0.486842 | 8.4:-1335448 | MS.gene96286:CDS |
| TTTGATGTGCTGTTGAAGAA+TGG | 0.488512 | 8.4:-1335421 | MS.gene96286:CDS |
| AAGAGAACTAAGAATTCTAA+AGG | 0.489638 | 8.4:-1334773 | MS.gene96286:CDS |
| GTGCTACACCCAAAGCTGCC+GGG | 0.499237 | 8.4:-1334814 | MS.gene96286:CDS |
| TCAGCATCAACCTCAACAAT+GGG | 0.503809 | 8.4:+1335127 | None:intergenic |
| AATTTGGGAACAATTGCGTT+GGG | 0.504833 | 8.4:-1335337 | MS.gene96286:CDS |
| TGTGCTACACCCAAAGCTGC+CGG | 0.508668 | 8.4:-1334815 | MS.gene96286:CDS |
| GCATCTCTCTGATTGGACCT+GGG | 0.513171 | 8.4:+1334546 | None:intergenic |
| AAATGCAAGAAGGAGAAGAA+AGG | 0.526369 | 8.4:-1335076 | MS.gene96286:CDS |
| TTCTTCATGCGCTTGACAGA+TGG | 0.526672 | 8.4:+1334461 | None:intergenic |
| GAAGAATGGGAAGAAGTTGT+TGG | 0.527818 | 8.4:-1335407 | MS.gene96286:CDS |
| CATCTCTCTGATTGGACCTG+GGG | 0.530708 | 8.4:+1334547 | None:intergenic |
| GAGATGAATTCTGCTGAGAA+CGG | 0.533402 | 8.4:-1334977 | MS.gene96286:CDS |
| TTCTAAAGGAAAGACATCTC+AGG | 0.538949 | 8.4:-1334759 | MS.gene96286:CDS |
| ATCAGCATCAACCTCAACAA+TGG | 0.543387 | 8.4:+1335126 | None:intergenic |
| GGTCCGGTATCGATGCTTTG+AGG | 0.546353 | 8.4:-1335753 | MS.gene96286:CDS |
| GCGGAAGCAGGTTTGGAAGA+CGG | 0.548014 | 8.4:-1334851 | MS.gene96286:CDS |
| GCGAAGCGAGACGATCGATA+AGG | 0.550404 | 8.4:+1335848 | None:intergenic |
| TGGAGGTGAAGAAGAGTGGT+GGG | 0.551897 | 8.4:-1335387 | MS.gene96286:CDS |
| GATGGGGAAATTGCCTGATA+AGG | 0.554479 | 8.4:-1335473 | MS.gene96286:CDS |
| TTGATGTGCTGTTGAAGAAT+GGG | 0.555591 | 8.4:-1335420 | MS.gene96286:CDS |
| AGATTTGGTTCCCATTGTTG+AGG | 0.558856 | 8.4:-1335137 | MS.gene96286:CDS |
| TGGGGATAAAAGCTCAAAGA+AGG | 0.560037 | 8.4:-1334687 | MS.gene96286:CDS |
| TCTGCTCCTGATTGTGTACA+GGG | 0.566685 | 8.4:-1335280 | MS.gene96286:CDS |
| GCTTATGAATAAGAATTCGT+GGG | 0.567848 | 8.4:-1335680 | MS.gene96286:CDS |
| TAACCTCAAAGCATCGATAC+CGG | 0.568245 | 8.4:+1335750 | None:intergenic |
| GAGGTTCGAAATCACACTCT+CGG | 0.570687 | 8.4:+1334898 | None:intergenic |
| TTGGAGGTGAAGAAGAGTGG+TGG | 0.574718 | 8.4:-1335388 | MS.gene96286:CDS |
| GATGCTGATGTTGTTCAGAA+TGG | 0.576099 | 8.4:-1335112 | MS.gene96286:CDS |
| GACTCTGCAGTAGCAAAGAG+TGG | 0.582592 | 8.4:-1334707 | MS.gene96286:CDS |
| TGGAAATTCAATTGATGAGG+TGG | 0.584323 | 8.4:-1334927 | MS.gene96286:CDS |
| ACTCTGCAGTAGCAAAGAGT+GGG | 0.585415 | 8.4:-1334706 | MS.gene96286:CDS |
| TGCTACACCCAAAGCTGCCG+GGG | 0.586441 | 8.4:-1334813 | MS.gene96286:CDS |
| TCGAGTGATAAGTTGTTGCA+AGG | 0.586678 | 8.4:-1335604 | MS.gene96286:CDS |
| CCTCCAAAAGCAGTTTGAGA+AGG | 0.589423 | 8.4:-1334879 | MS.gene96286:CDS |
| AAGAGTGGTGGGGATGAAGG+TGG | 0.589968 | 8.4:-1335376 | MS.gene96286:CDS |
| TTGTTGGAGGTGAAGAAGAG+TGG | 0.590934 | 8.4:-1335391 | MS.gene96286:CDS |
| CGAGTTGTTTAATCAGTGAA+CGG | 0.592355 | 8.4:+1336031 | None:intergenic |
| AAATACTGAACGGTGAATGA+AGG | 0.593424 | 8.4:+1335808 | None:intergenic |
| ATCTCTCTGATTGGACCTGG+GGG | 0.597893 | 8.4:+1334548 | None:intergenic |
| CTTCCTCTGGGTGTAACAGA+GGG | 0.600725 | 8.4:+1334590 | None:intergenic |
| GAATTTGGGAACAATTGCGT+TGG | 0.602915 | 8.4:-1335338 | MS.gene96286:CDS |
| AAGGCGAAACTGAAGAAGGC+GGG | 0.603500 | 8.4:-1334509 | MS.gene96286:CDS |
| TCTCTTCTTAGAAACATCCC+CGG | 0.606700 | 8.4:+1334796 | None:intergenic |
| ACTGTGCGTCGTGAATGGTC+CGG | 0.612605 | 8.4:-1335769 | MS.gene96286:CDS |
| TTCTGTTGATCGGGATGATG+AGG | 0.614662 | 8.4:-1335167 | MS.gene96286:CDS |
| ATAAGGTCAGCTTGAACGAG+AGG | 0.622026 | 8.4:+1335865 | None:intergenic |
| CCTCTGGGTGTAACAGAGGG+AGG | 0.624057 | 8.4:+1334593 | None:intergenic |
| GTTGCTGAAGAAATGCAAGA+AGG | 0.626289 | 8.4:-1335086 | MS.gene96286:CDS |
| GGAATTCTCAAGCTCTGAGG+AGG | 0.632414 | 8.4:+1334614 | None:intergenic |
| GAAAGTTGAGAAATACTGAA+CGG | 0.634784 | 8.4:+1335798 | None:intergenic |
| ACTTCCTCTGGGTGTAACAG+AGG | 0.636601 | 8.4:+1334589 | None:intergenic |
| GGAGGTGAAGAAGAGTGGTG+GGG | 0.644571 | 8.4:-1335386 | MS.gene96286:CDS |
| GCAGTTTGAGAAGGTTGCTG+CGG | 0.645976 | 8.4:-1334870 | MS.gene96286:CDS |
| AATGATGCCAATGAAAATGG+TGG | 0.646819 | 8.4:-1334947 | MS.gene96286:CDS |
| TGGTGGAAATTCAATTGATG+AGG | 0.647153 | 8.4:-1334930 | MS.gene96286:CDS |
| AAAGGCGAAACTGAAGAAGG+CGG | 0.655137 | 8.4:-1334510 | MS.gene96286:CDS |
| GATGAATTCTGCTGAGAACG+GGG | 0.656358 | 8.4:-1334975 | MS.gene96286:CDS |
| GAATGGGAAGAAGTTGTTGG+AGG | 0.659546 | 8.4:-1335404 | MS.gene96286:CDS |
| GGAAGTGGTTGAGATCGAGA+AGG | 0.660667 | 8.4:+1335949 | None:intergenic |
| CCTCCCTCTGTTACACCCAG+AGG | 0.663891 | 8.4:-1334593 | MS.gene96286:CDS |
| GGAGGAATTCTCAAGCTCTG+AGG | 0.666968 | 8.4:+1334611 | None:intergenic |
| CTGCTCCTGATTGTGTACAG+GGG | 0.670253 | 8.4:-1335279 | MS.gene96286:CDS |
| GTTCTCAGCAGAATTCATCT+CGG | 0.671398 | 8.4:+1334979 | None:intergenic |
| AGAGGAAGTGCACTCAAACA+GGG | 0.678015 | 8.4:-1334575 | MS.gene96286:CDS |
| CTCTGCAGTAGCAAAGAGTG+GGG | 0.679707 | 8.4:-1334705 | MS.gene96286:CDS |
| ATTTGGGAACAATTGCGTTG+GGG | 0.684674 | 8.4:-1335336 | MS.gene96286:CDS |
| TGAGGAGGTAAAGGACTGTG+TGG | 0.701475 | 8.4:+1334629 | None:intergenic |
| ACCATTCACGACGCACAGTG+AGG | 0.713806 | 8.4:+1335773 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATTTTATCTTCTTATT+CGG | - | chr8.4:1334770-1334789 | MS.gene96286:CDS | 10.0% |
| ! | AAGAGAACTAAGAATTCTAA+AGG | - | chr8.4:1335723-1335742 | MS.gene96286:CDS | 25.0% |
| ! | GAAGAAATTAAGATCTCTTT+CGG | - | chr8.4:1336052-1336071 | MS.gene96286:CDS | 25.0% |
| ! | TAAAGTGATTGTGAATTGTT+TGG | - | chr8.4:1334852-1334871 | MS.gene96286:CDS | 25.0% |
| !! | ATTTTCCATGAAAAATAACC+TGG | - | chr8.4:1335836-1335855 | MS.gene96286:CDS | 25.0% |
| !! | TGTTAATTATCATGTTGCTT+CGG | - | chr8.4:1334921-1334940 | MS.gene96286:CDS | 25.0% |
| AAGAATGATGCCAATGAAAA+TGG | - | chr8.4:1335546-1335565 | MS.gene96286:CDS | 30.0% | |
| ATTCATAAGCGAAAAACTCT+TGG | + | chr8.4:1334806-1334825 | None:intergenic | 30.0% | |
| GAAAGTTGAGAAATACTGAA+CGG | + | chr8.4:1334701-1334720 | None:intergenic | 30.0% | |
| GCTTATGAATAAGAATTCGT+GGG | - | chr8.4:1334816-1334835 | MS.gene96286:CDS | 30.0% | |
| TCAAACTCGTCTTAAAATCA+TGG | - | chr8.4:1334521-1334540 | MS.gene96286:CDS | 30.0% | |
| TTCTGTTGACAAAGTGAAAA+AGG | - | chr8.4:1335443-1335462 | MS.gene96286:CDS | 30.0% | |
| TTGTTAGGGAAGATTAAGAT+TGG | - | chr8.4:1335048-1335067 | MS.gene96286:CDS | 30.0% | |
| ! | TGAATTTCCACCATTTTCAT+TGG | + | chr8.4:1335559-1335578 | None:intergenic | 30.0% |
| !!! | TCTCAGGATTTTGATTTGAA+TGG | - | chr8.4:1335753-1335772 | MS.gene96286:CDS | 30.0% |
| AAATACTGAACGGTGAATGA+AGG | + | chr8.4:1334691-1334710 | None:intergenic | 35.0% | |
| AAATGCAAGAAGGAGAAGAA+AGG | - | chr8.4:1335420-1335439 | MS.gene96286:CDS | 35.0% | |
| AATGATGCCAATGAAAATGG+TGG | - | chr8.4:1335549-1335568 | MS.gene96286:CDS | 35.0% | |
| AATTTGGGAACAATTGCGTT+GGG | - | chr8.4:1335159-1335178 | MS.gene96286:CDS | 35.0% | |
| AGAAGGATGCTGTTAATTCA+GGG | - | chr8.4:1335286-1335305 | MS.gene96286:CDS | 35.0% | |
| CCATGAAAAATAACCTGGTA+TGG | - | chr8.4:1335841-1335860 | MS.gene96286:CDS | 35.0% | |
| CGAGTTGTTTAATCAGTGAA+CGG | + | chr8.4:1334468-1334487 | None:intergenic | 35.0% | |
| CGCTTATGAATAAGAATTCG+TGG | - | chr8.4:1334815-1334834 | MS.gene96286:CDS | 35.0% | |
| GAATAAGAATTCGTGGGATT+TGG | - | chr8.4:1334822-1334841 | MS.gene96286:CDS | 35.0% | |
| GATAAGTTGTTGCAAGGAAA+AGG | - | chr8.4:1334898-1334917 | MS.gene96286:CDS | 35.0% | |
| TGGAAATTCAATTGATGAGG+TGG | - | chr8.4:1335569-1335588 | MS.gene96286:CDS | 35.0% | |
| TGGTGGAAATTCAATTGATG+AGG | - | chr8.4:1335566-1335585 | MS.gene96286:CDS | 35.0% | |
| TTCCCCATCACAGTAAAAAA+CGG | + | chr8.4:1335012-1335031 | None:intergenic | 35.0% | |
| TTCCCTAACAAAACCTTATC+AGG | + | chr8.4:1335039-1335058 | None:intergenic | 35.0% | |
| ! | AACACCTTTTCTTCCAGTTA+AGG | - | chr8.4:1334960-1334979 | MS.gene96286:CDS | 35.0% |
| ! | AAGGTCTTTTCTACTGTGTT+TGG | - | chr8.4:1334596-1334615 | MS.gene96286:CDS | 35.0% |
| ! | GATGGTGATGTTGTGAATTT+GGG | - | chr8.4:1335144-1335163 | MS.gene96286:CDS | 35.0% |
| ! | TGATGGTGATGTTGTGAATT+TGG | - | chr8.4:1335143-1335162 | MS.gene96286:CDS | 35.0% |
| ! | TTCTAAAGGAAAGACATCTC+AGG | - | chr8.4:1335737-1335756 | MS.gene96286:CDS | 35.0% |
| ! | TTGATGTGCTGTTGAAGAAT+GGG | - | chr8.4:1335076-1335095 | MS.gene96286:CDS | 35.0% |
| ! | TTTGATGTGCTGTTGAAGAA+TGG | - | chr8.4:1335075-1335094 | MS.gene96286:CDS | 35.0% |
| !! | TCAGTTTCGCCTTTTTGTTT+TGG | + | chr8.4:1335980-1335999 | None:intergenic | 35.0% |
| !!! | AAGCCGTTTTTTACTGTGAT+GGG | - | chr8.4:1335006-1335025 | MS.gene96286:CDS | 35.0% |
| !!! | CAGGATTTTGATTTGAATGG+TGG | - | chr8.4:1335756-1335775 | MS.gene96286:CDS | 35.0% |
| !!! | CCATACCAGGTTATTTTTCA+TGG | + | chr8.4:1335844-1335863 | None:intergenic | 35.0% |
| !!! | TAAGCCGTTTTTTACTGTGA+TGG | - | chr8.4:1335005-1335024 | MS.gene96286:CDS | 35.0% |
| !!! | TGCCTGATAAGGTTTTGTTA+GGG | - | chr8.4:1335034-1335053 | MS.gene96286:CDS | 35.0% |
| !!! | TTGCCTGATAAGGTTTTGTT+AGG | - | chr8.4:1335033-1335052 | MS.gene96286:CDS | 35.0% |
| AAGAAGATGCCAAAAAGCTC+TGG | - | chr8.4:1334572-1334591 | MS.gene96286:CDS | 40.0% | |
| AGATGAATTCTGCTGAGAAC+GGG | - | chr8.4:1335520-1335539 | MS.gene96286:CDS | 40.0% | |
| ATCAGCATCAACCTCAACAA+TGG | + | chr8.4:1335373-1335392 | None:intergenic | 40.0% | |
| ATTTGGGAACAATTGCGTTG+GGG | - | chr8.4:1335160-1335179 | MS.gene96286:CDS | 40.0% | |
| CAAAAAGGCGAAACTGAAGA+AGG | - | chr8.4:1335983-1336002 | MS.gene96286:CDS | 40.0% | |
| CGATTCCTGATTCTGTTGAT+CGG | - | chr8.4:1335319-1335338 | MS.gene96286:CDS | 40.0% | |
| CTCACCTTAACTGGAAGAAA+AGG | + | chr8.4:1334967-1334986 | None:intergenic | 40.0% | |
| GAAGAATGGGAAGAAGTTGT+TGG | - | chr8.4:1335089-1335108 | MS.gene96286:CDS | 40.0% | |
| GAATTTGGGAACAATTGCGT+TGG | - | chr8.4:1335158-1335177 | MS.gene96286:CDS | 40.0% | |
| GAGAAGGATGCTGTTAATTC+AGG | - | chr8.4:1335285-1335304 | MS.gene96286:CDS | 40.0% | |
| GAGATGAATTCTGCTGAGAA+CGG | - | chr8.4:1335519-1335538 | MS.gene96286:CDS | 40.0% | |
| GATGCCTCTCCAAAACAAAA+AGG | - | chr8.4:1335968-1335987 | MS.gene96286:CDS | 40.0% | |
| GATGCTGATGTTGTTCAGAA+TGG | - | chr8.4:1335384-1335403 | MS.gene96286:CDS | 40.0% | |
| GATTCCTGATTCTGTTGATC+GGG | - | chr8.4:1335320-1335339 | MS.gene96286:CDS | 40.0% | |
| GTTCTCAGCAGAATTCATCT+CGG | + | chr8.4:1335520-1335539 | None:intergenic | 40.0% | |
| GTTGCTGAAGAAATGCAAGA+AGG | - | chr8.4:1335410-1335429 | MS.gene96286:CDS | 40.0% | |
| TCAACAATGGGAACCAAATC+TGG | + | chr8.4:1335360-1335379 | None:intergenic | 40.0% | |
| TCAGCATCAACCTCAACAAT+GGG | + | chr8.4:1335372-1335391 | None:intergenic | 40.0% | |
| TCCAAAACACTCACCTTAAC+TGG | + | chr8.4:1334976-1334995 | None:intergenic | 40.0% | |
| TCGAGTGATAAGTTGTTGCA+AGG | - | chr8.4:1334892-1334911 | MS.gene96286:CDS | 40.0% | |
| TCTCTTCTTAGAAACATCCC+CGG | + | chr8.4:1335703-1335722 | None:intergenic | 40.0% | |
| TGGGGATAAAAGCTCAAAGA+AGG | - | chr8.4:1335809-1335828 | MS.gene96286:CDS | 40.0% | |
| ! | AAGACCTTTCCAGAGCTTTT+TGG | + | chr8.4:1334584-1334603 | None:intergenic | 40.0% |
| ! | AGATTTGGTTCCCATTGTTG+AGG | - | chr8.4:1335359-1335378 | MS.gene96286:CDS | 40.0% |
| ! | CAACCTTCTCAAACTGCTTT+TGG | + | chr8.4:1335623-1335642 | None:intergenic | 40.0% |
| ! | GCTTCGAAGTTGTTTGAGTT+AGG | - | chr8.4:1335192-1335211 | MS.gene96286:CDS | 40.0% |
| ! | TCCAGTTAAGGTGAGTGTTT+TGG | - | chr8.4:1334972-1334991 | MS.gene96286:CDS | 40.0% |
| ! | TGAGTTTTTGCAGCTAGAGA+AGG | - | chr8.4:1335269-1335288 | MS.gene96286:CDS | 40.0% |
| !! | AGCTTTTTGGCATCTTCTTC+AGG | + | chr8.4:1334571-1334590 | None:intergenic | 40.0% |
| !! | TAACCTCAAAGCATCGATAC+CGG | + | chr8.4:1334749-1334768 | None:intergenic | 40.0% |
| !!! | AGCCGTTTTTTACTGTGATG+GGG | - | chr8.4:1335007-1335026 | MS.gene96286:CDS | 40.0% |
| !!! | TTCGCCTTTTTGTTTTGGAG+AGG | + | chr8.4:1335975-1335994 | None:intergenic | 40.0% |
| AAAGGCGAAACTGAAGAAGG+CGG | - | chr8.4:1335986-1336005 | MS.gene96286:CDS | 45.0% | |
| ACTCTGCAGTAGCAAAGAGT+GGG | - | chr8.4:1335790-1335809 | MS.gene96286:CDS | 45.0% | |
| ATAAGGTCAGCTTGAACGAG+AGG | + | chr8.4:1334634-1334653 | None:intergenic | 45.0% | |
| CCTCCAAAAGCAGTTTGAGA+AGG | - | chr8.4:1335617-1335636 | MS.gene96286:CDS | 45.0% | |
| CTATTCCCCTGTACACAATC+AGG | + | chr8.4:1335225-1335244 | None:intergenic | 45.0% | |
| GAATGGGAAGAAGTTGTTGG+AGG | - | chr8.4:1335092-1335111 | MS.gene96286:CDS | 45.0% | |
| GAGGTTCGAAATCACACTCT+CGG | + | chr8.4:1335601-1335620 | None:intergenic | 45.0% | |
| GATGAATTCTGCTGAGAACG+GGG | - | chr8.4:1335521-1335540 | MS.gene96286:CDS | 45.0% | |
| GATGGGGAAATTGCCTGATA+AGG | - | chr8.4:1335023-1335042 | MS.gene96286:CDS | 45.0% | |
| GCGGGTAGAAGGACAATAAT+TGG | - | chr8.4:1336005-1336024 | MS.gene96286:CDS | 45.0% | |
| TCATCCCGATCAACAGAATC+AGG | + | chr8.4:1335327-1335346 | None:intergenic | 45.0% | |
| TCTGCTCCTGATTGTGTACA+GGG | - | chr8.4:1335216-1335235 | MS.gene96286:CDS | 45.0% | |
| TGTTTGAGTGCACTTCCTCT+GGG | + | chr8.4:1335921-1335940 | None:intergenic | 45.0% | |
| TTCTGCTCCTGATTGTGTAC+AGG | - | chr8.4:1335215-1335234 | MS.gene96286:CDS | 45.0% | |
| TTCTGTTGATCGGGATGATG+AGG | - | chr8.4:1335329-1335348 | MS.gene96286:CDS | 45.0% | |
| TTCTTCATGCGCTTGACAGA+TGG | + | chr8.4:1336038-1336057 | None:intergenic | 45.0% | |
| TTGGCATCTTCTTCAGGAAG+TGG | + | chr8.4:1334565-1334584 | None:intergenic | 45.0% | |
| TTGTTGGAGGTGAAGAAGAG+TGG | - | chr8.4:1335105-1335124 | MS.gene96286:CDS | 45.0% | |
| ! | AGAGGAAGTGCACTCAAACA+GGG | - | chr8.4:1335921-1335940 | MS.gene96286:CDS | 45.0% |
| !! | CCTTCTCAAACTGCTTTTGG+AGG | + | chr8.4:1335620-1335639 | None:intergenic | 45.0% |
| !! | GATGCCAAAAAGCTCTGGAA+AGG | - | chr8.4:1334577-1334596 | MS.gene96286:CDS | 45.0% |
| !! | TGATGAGGAAGTGCCAGATT+TGG | - | chr8.4:1335344-1335363 | MS.gene96286:CDS | 45.0% |
| AACTGAAGAAGGCGGGTAGA+AGG | - | chr8.4:1335994-1336013 | MS.gene96286:CDS | 50.0% | |
| AAGGCGAAACTGAAGAAGGC+GGG | - | chr8.4:1335987-1336006 | MS.gene96286:CDS | 50.0% | |
| AATCAGTGAACGGCCAGCTT+CGG | + | chr8.4:1334458-1334477 | None:intergenic | 50.0% | |
| ACTTCCTCTGGGTGTAACAG+AGG | + | chr8.4:1335910-1335929 | None:intergenic | 50.0% | |
| ATCTCTCTGATTGGACCTGG+GGG | + | chr8.4:1335951-1335970 | None:intergenic | 50.0% | |
| CATCTCTCTGATTGGACCTG+GGG | + | chr8.4:1335952-1335971 | None:intergenic | 50.0% | |
| CTCTGCAGTAGCAAAGAGTG+GGG | - | chr8.4:1335791-1335810 | MS.gene96286:CDS | 50.0% | |
| CTGCTCCTGATTGTGTACAG+GGG | - | chr8.4:1335217-1335236 | MS.gene96286:CDS | 50.0% | |
| CTGTTTGAGTGCACTTCCTC+TGG | + | chr8.4:1335922-1335941 | None:intergenic | 50.0% | |
| CTTCCTCTGGGTGTAACAGA+GGG | + | chr8.4:1335909-1335928 | None:intergenic | 50.0% | |
| GACTCTGCAGTAGCAAAGAG+TGG | - | chr8.4:1335789-1335808 | MS.gene96286:CDS | 50.0% | |
| GCAGTTTGAGAAGGTTGCTG+CGG | - | chr8.4:1335626-1335645 | MS.gene96286:CDS | 50.0% | |
| GCATCTCTCTGATTGGACCT+GGG | + | chr8.4:1335953-1335972 | None:intergenic | 50.0% | |
| GGAACAATTGCGTTGGGGAT+GGG | - | chr8.4:1335165-1335184 | MS.gene96286:CDS | 50.0% | |
| GGAAGTGGTTGAGATCGAGA+AGG | + | chr8.4:1334550-1334569 | None:intergenic | 50.0% | |
| GGAGGAATTCTCAAGCTCTG+AGG | + | chr8.4:1335888-1335907 | None:intergenic | 50.0% | |
| TGAGGAGGTAAAGGACTGTG+TGG | + | chr8.4:1335870-1335889 | None:intergenic | 50.0% | |
| TGGAGGTGAAGAAGAGTGGT+GGG | - | chr8.4:1335109-1335128 | MS.gene96286:CDS | 50.0% | |
| TTGGAGGTGAAGAAGAGTGG+TGG | - | chr8.4:1335108-1335127 | MS.gene96286:CDS | 50.0% | |
| ! | AAGAAGAGTGGTGGGGATGA+AGG | - | chr8.4:1335117-1335136 | MS.gene96286:CDS | 50.0% |
| ! | CAGAGGAAGTGCACTCAAAC+AGG | - | chr8.4:1335920-1335939 | MS.gene96286:CDS | 50.0% |
| !! | CTCAAGCTCTGAGGAGGTAA+AGG | + | chr8.4:1335879-1335898 | None:intergenic | 50.0% |
| !! | GGAATTCTCAAGCTCTGAGG+AGG | + | chr8.4:1335885-1335904 | None:intergenic | 50.0% |
| !! | TGGAGAGGCATCTCTCTGAT+TGG | + | chr8.4:1335960-1335979 | None:intergenic | 50.0% |
| ACCATTCACGACGCACAGTG+AGG | + | chr8.4:1334726-1334745 | None:intergenic | 55.0% | |
| ACTGTGCGTCGTGAATGGTC+CGG | - | chr8.4:1334727-1334746 | MS.gene96286:CDS | 55.0% | |
| AGAAACATCCCCGGCAGCTT+TGG | + | chr8.4:1335694-1335713 | None:intergenic | 55.0% | |
| GAAACATCCCCGGCAGCTTT+GGG | + | chr8.4:1335693-1335712 | None:intergenic | 55.0% | |
| GACTGTGTGGCTTCCATACC+AGG | + | chr8.4:1335857-1335876 | None:intergenic | 55.0% | |
| GCGAAGCGAGACGATCGATA+AGG | + | chr8.4:1334651-1334670 | None:intergenic | 55.0% | |
| GCGGAAGCAGGTTTGGAAGA+CGG | - | chr8.4:1335645-1335664 | MS.gene96286:CDS | 55.0% | |
| GGAGGTGAAGAAGAGTGGTG+GGG | - | chr8.4:1335110-1335129 | MS.gene96286:CDS | 55.0% | |
| GGCATCTCTCTGATTGGACC+TGG | + | chr8.4:1335954-1335973 | None:intergenic | 55.0% | |
| GGGAACAATTGCGTTGGGGA+TGG | - | chr8.4:1335164-1335183 | MS.gene96286:CDS | 55.0% | |
| TCCTCACTGTGCGTCGTGAA+TGG | - | chr8.4:1334722-1334741 | MS.gene96286:CDS | 55.0% | |
| TGTGCTACACCCAAAGCTGC+CGG | - | chr8.4:1335681-1335700 | MS.gene96286:CDS | 55.0% | |
| ! | AAGAGTGGTGGGGATGAAGG+TGG | - | chr8.4:1335120-1335139 | MS.gene96286:CDS | 55.0% |
| !! | GGTCCGGTATCGATGCTTTG+AGG | - | chr8.4:1334743-1334762 | MS.gene96286:CDS | 55.0% |
| CCTCCCTCTGTTACACCCAG+AGG | - | chr8.4:1335903-1335922 | MS.gene96286:CDS | 60.0% | |
| CCTCTGGGTGTAACAGAGGG+AGG | + | chr8.4:1335906-1335925 | None:intergenic | 60.0% | |
| CTCAAACAGGGTGTACCCCC+AGG | - | chr8.4:1335933-1335952 | MS.gene96286:CDS | 60.0% | |
| GAGAAGGTTGCTGCGGAAGC+AGG | - | chr8.4:1335633-1335652 | MS.gene96286:CDS | 60.0% | |
| GCGACAAACGCATCCGAAGC+TGG | - | chr8.4:1334442-1334461 | MS.gene96286:CDS | 60.0% | |
| GGTGGGGATGAAGGTGGTGA+TGG | - | chr8.4:1335126-1335145 | MS.gene96286:CDS | 60.0% | |
| GGTTGCTGCGGAAGCAGGTT+TGG | - | chr8.4:1335638-1335657 | MS.gene96286:CDS | 60.0% | |
| GTGCTACACCCAAAGCTGCC+GGG | - | chr8.4:1335682-1335701 | MS.gene96286:CDS | 60.0% | |
| TGCTACACCCAAAGCTGCCG+GGG | - | chr8.4:1335683-1335702 | MS.gene96286:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 1334439 | 1336079 | 1334439 | ID=MS.gene96286 |
| chr8.4 | mRNA | 1334439 | 1336079 | 1334439 | ID=MS.gene96286.t1;Parent=MS.gene96286 |
| chr8.4 | exon | 1334439 | 1336079 | 1334439 | ID=MS.gene96286.t1.exon1;Parent=MS.gene96286.t1 |
| chr8.4 | CDS | 1334439 | 1336079 | 1334439 | ID=cds.MS.gene96286.t1;Parent=MS.gene96286.t1 |
| Gene Sequence |
| Protein sequence |
