AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96424

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96424.t1 MTR_0092s0100 95.387 737 23 3 1 734 4 732 0.0 1432
MS.gene96424.t1 MTR_0092s0100 95.387 737 23 3 1 734 1 729 0.0 1432
MS.gene96424.t1 MTR_4g026485 53.346 538 194 11 209 734 133 625 5.71e-176 518
MS.gene96424.t1 MTR_0092s0060 95.722 187 6 1 1 187 1 185 1.25e-122 364
MS.gene96424.t1 MTR_8g077940 35.946 370 220 11 375 734 180 542 3.59e-59 209
MS.gene96424.t1 MTR_7g027190 26.484 438 270 11 322 734 264 674 1.59e-35 144
MS.gene96424.t1 MTR_3g065980 27.895 380 246 7 374 733 169 540 2.53e-35 141
MS.gene96424.t1 MTR_3g056110 27.056 377 248 9 376 733 174 542 3.92e-32 132
MS.gene96424.t1 MTR_4g076020 28.804 368 223 13 380 733 87 429 4.81e-31 127
MS.gene96424.t1 MTR_5g058860 29.695 394 233 16 374 734 116 498 1.62e-29 123
MS.gene96424.t1 MTR_4g077760 28.818 406 265 12 343 733 159 555 6.36e-29 122
MS.gene96424.t1 MTR_5g094450 25.469 373 259 7 378 733 162 532 1.59e-28 120
MS.gene96424.t1 MTR_3g089055 26.954 371 252 8 378 733 204 570 1.64e-27 118
MS.gene96424.t1 MTR_3g089055 26.954 371 252 8 378 733 199 565 1.87e-27 118
MS.gene96424.t1 MTR_3g072710 27.182 401 236 16 374 734 117 501 3.03e-27 117
MS.gene96424.t1 MTR_2g082090 26.031 388 263 9 363 732 197 578 3.85e-26 114
MS.gene96424.t1 MTR_7g074650 27.049 366 241 9 380 733 441 792 5.15e-26 114
MS.gene96424.t1 MTR_5g097480 23.099 355 256 7 393 733 193 544 4.19e-25 110
MS.gene96424.t1 MTR_1g029420 26.596 376 247 12 378 733 226 592 4.64e-25 110
MS.gene96424.t1 MTR_8g093070 26.273 373 254 9 371 732 133 495 1.11e-24 108
MS.gene96424.t1 MTR_4g102790 23.810 378 264 7 374 732 289 661 4.54e-24 108
MS.gene96424.t1 MTR_2g026250 24.543 383 253 11 376 734 227 597 6.02e-24 107
MS.gene96424.t1 MTR_1g069725 28.800 375 237 16 374 734 106 464 1.07e-23 105
MS.gene96424.t1 MTR_4g104020 25.258 388 251 12 374 734 146 521 7.05e-23 103
MS.gene96424.t1 MTR_4g133660 23.622 381 255 9 378 734 176 544 1.33e-22 102
MS.gene96424.t1 MTR_5g019750 30.736 231 147 6 511 734 71 295 2.94e-22 98.2
MS.gene96424.t1 MTR_8g442410 22.798 386 260 10 374 733 152 525 5.14e-19 91.7
MS.gene96424.t1 MTR_4g097080 22.251 391 273 12 364 733 123 503 9.78e-19 90.5
MS.gene96424.t1 MTR_2g097473 23.181 371 262 9 378 732 290 653 1.18e-18 90.9
MS.gene96424.t1 MTR_2g034280 23.711 388 271 10 363 733 196 575 2.36e-18 89.7
MS.gene96424.t1 MTR_2g034260 24.870 386 258 12 373 733 206 584 2.51e-18 89.7
MS.gene96424.t1 MTR_2g034250 24.147 381 268 9 373 733 206 585 7.07e-18 88.2
MS.gene96424.t1 MTR_1g096030 25.686 401 237 16 374 732 77 458 2.26e-17 85.9
MS.gene96424.t1 MTR_4g064200 23.848 369 263 7 378 732 285 649 2.45e-17 86.7
MS.gene96424.t1 MTR_7g109580 25.337 371 256 11 378 733 190 554 4.75e-17 85.5
MS.gene96424.t1 MTR_7g062120 22.222 378 262 6 378 733 373 740 5.13e-17 85.9
MS.gene96424.t1 MTR_2g097410 22.572 381 257 9 378 732 372 740 1.14e-16 84.7
MS.gene96424.t1 MTR_2g097390 24.129 373 257 11 378 732 276 640 1.18e-16 84.7
MS.gene96424.t1 MTR_2g097463 21.563 371 268 7 378 732 291 654 2.88e-16 83.2
MS.gene96424.t1 MTR_2g097310 22.798 386 246 10 378 732 273 637 3.41e-16 83.2
MS.gene96424.t1 MTR_4g064160 21.792 413 283 10 348 732 283 683 3.55e-16 83.2
MS.gene96424.t1 MTR_2g099110 23.274 391 251 10 378 733 75 451 4.36e-16 82.0
MS.gene96424.t1 MTR_2g097467 21.739 414 290 11 346 732 247 653 6.05e-16 82.4
MS.gene96424.t1 MTR_2g097380 22.715 361 234 9 385 732 232 560 4.21e-15 79.3
MS.gene96424.t1 MTR_4g064180 22.432 370 265 9 378 728 255 621 8.49e-15 78.6
MS.gene96424.t1 MTR_2g089100 23.039 408 243 15 378 732 53 442 2.67e-14 76.3
MS.gene96424.t1 MTR_4g076140 32.941 170 106 2 354 515 19 188 5.00e-14 75.5
MS.gene96424.t1 MTR_4g064120 21.409 369 270 7 378 728 255 621 5.05e-14 76.3
MS.gene96424.t1 MTR_2g097350 24.011 379 250 14 378 732 275 639 9.62e-14 75.1
MS.gene96424.t1 MTR_4g064150 21.448 373 273 7 378 732 362 732 1.34e-13 75.1
MS.gene96424.t1 MTR_5g009080 27.179 195 136 2 354 546 33 223 1.09e-12 71.2
MS.gene96424.t1 MTR_5g015490 21.465 396 251 11 378 733 115 490 1.13e-12 71.2
MS.gene96424.t1 MTR_3g022830 31.724 145 89 2 378 516 26 166 3.20e-12 69.7
MS.gene96424.t1 MTR_1g086970 23.457 405 269 16 358 733 86 478 4.83e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96424.t1 AT4G00150 56.959 388 139 10 350 734 193 555 8.88e-139 420
MS.gene96424.t1 AT2G45160 48.069 466 201 16 292 734 193 640 1.61e-121 378
MS.gene96424.t1 AT3G60630 44.950 505 202 17 271 734 154 623 1.88e-111 351
MS.gene96424.t1 AT4G36710 32.888 374 225 12 375 733 123 485 3.75e-55 197
MS.gene96424.t1 AT2G01570 29.301 372 240 9 374 733 221 581 1.96e-33 136
MS.gene96424.t1 AT5G66770 28.244 393 259 13 356 733 200 584 2.66e-31 130
MS.gene96424.t1 AT5G17490 29.067 375 236 13 374 733 157 516 6.21e-31 128
MS.gene96424.t1 AT3G03450 27.056 377 247 10 374 733 180 545 9.82e-31 127
MS.gene96424.t1 AT2G04890 26.005 373 246 8 378 733 54 413 8.39e-30 123
MS.gene96424.t1 AT5G41920 25.366 410 265 10 340 733 16 400 1.43e-29 122
MS.gene96424.t1 AT3G54220 28.056 360 246 8 380 732 296 649 1.94e-29 125
MS.gene96424.t1 AT1G14920 26.790 377 243 10 374 733 169 529 6.30e-29 122
MS.gene96424.t1 AT5G48150 24.731 372 260 8 378 733 123 490 6.86e-29 121
MS.gene96424.t1 AT5G48150 24.731 372 260 8 378 733 123 490 6.86e-29 121
MS.gene96424.t1 AT5G48150 24.731 372 260 8 378 733 123 490 6.86e-29 121
MS.gene96424.t1 AT5G48150 24.731 372 260 8 378 733 123 490 6.86e-29 121
MS.gene96424.t1 AT3G50650 28.800 375 222 12 387 733 185 542 7.03e-28 119
MS.gene96424.t1 AT1G66350 25.606 371 251 10 374 734 152 507 1.87e-27 117
MS.gene96424.t1 AT4G08250 29.288 379 242 14 374 732 104 476 2.92e-27 116
MS.gene96424.t1 AT1G50600 24.194 372 261 7 378 733 160 526 4.82e-27 116
MS.gene96424.t1 AT1G50600 24.194 372 261 7 378 733 235 601 1.31e-26 115
MS.gene96424.t1 AT1G50600 24.194 372 261 7 378 733 231 597 1.40e-26 115
MS.gene96424.t1 AT1G21450 24.574 411 272 11 351 733 193 593 4.43e-26 114
MS.gene96424.t1 AT4G17230 25.526 380 246 7 378 733 159 525 5.20e-26 113
MS.gene96424.t1 AT4G17230 25.526 380 246 7 378 733 159 525 5.20e-26 113
MS.gene96424.t1 AT5G59450 23.333 420 281 10 344 733 190 598 5.36e-23 104
MS.gene96424.t1 AT1G55580 24.771 327 220 6 423 733 129 445 1.40e-19 92.8
MS.gene96424.t1 AT1G63100 24.495 396 246 14 374 732 249 628 2.18e-19 93.2
MS.gene96424.t1 AT1G63100 24.051 395 249 12 374 732 274 653 2.95e-19 92.8
MS.gene96424.t1 AT1G07520 21.067 375 269 8 381 732 322 692 6.53e-18 88.6
MS.gene96424.t1 AT1G07520 21.067 375 269 8 381 732 323 693 6.89e-18 88.6
MS.gene96424.t1 AT1G07520 21.067 375 269 8 381 732 158 528 7.05e-18 88.2
MS.gene96424.t1 AT1G07520 21.067 375 269 8 381 732 158 528 7.05e-18 88.2
MS.gene96424.t1 AT3G46600 21.594 389 281 7 366 733 194 579 1.67e-16 84.0
MS.gene96424.t1 AT3G46600 21.594 389 281 7 366 733 162 547 5.44e-16 82.4
MS.gene96424.t1 AT3G46600 21.622 370 273 6 378 733 5 371 1.05e-15 80.1
MS.gene96424.t1 AT1G07530 22.546 377 261 9 378 732 397 764 1.47e-15 81.3
MS.gene96424.t1 AT1G50420 29.897 194 116 5 374 556 54 238 3.55e-15 79.3
MS.gene96424.t1 AT4G37650 22.081 394 258 10 378 733 147 529 1.73e-14 77.4
MS.gene96424.t1 AT5G52510 24.522 314 191 11 455 733 338 640 4.22e-13 73.2
MS.gene96424.t1 AT2G29065 21.220 377 273 7 378 732 253 627 2.21e-12 70.9

Find 151 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTGAAGAACTGAAATT+AGG 0.187840 7.1:+56667296 None:intergenic
GGAAAAGGTGTGTTAGATTT+TGG 0.194202 7.1:-56667935 MS.gene96424:CDS
GGCAGTTGAGAAGCTTGTTT+TGG 0.246331 7.1:-56666007 MS.gene96424:CDS
AAGTTACCATTTGAAGAAAT+AGG 0.249425 7.1:+56667425 None:intergenic
TCTTCGCCGCCACCGCTTCC+AGG 0.267033 7.1:+56666903 None:intergenic
TTCCATTATCAATTTCAATA+TGG 0.276508 7.1:+56667574 None:intergenic
AATTCCGAAGATACCCTTCT+TGG 0.278051 7.1:-56667054 MS.gene96424:CDS
TTCCATATTGAAATTGATAA+TGG 0.285700 7.1:-56667576 MS.gene96424:CDS
GCTTCCCCATAGGAGAAATT+TGG 0.291304 7.1:+56666766 None:intergenic
AAATGCCTCCTTAAAATAAA+AGG 0.302232 7.1:+56666728 None:intergenic
GTAGGAGTGGTTTGTTGATT+TGG 0.323080 7.1:+56667779 None:intergenic
AGATATTGAAGATGCATCTA+TGG 0.323147 7.1:-56667552 MS.gene96424:CDS
GTATAAACTGAGCTTGGTTT+TGG 0.329115 7.1:+56667183 None:intergenic
GGAACACGCGCACGGGATAT+TGG 0.339508 7.1:-56666802 MS.gene96424:CDS
AATGGCGCCTAAGCAGAAAA+TGG 0.339684 7.1:-56666931 MS.gene96424:CDS
GAAGATACCCTTCTTGGATT+CGG 0.340738 7.1:-56667048 MS.gene96424:CDS
GTTTATACCTAACCCTAGTT+TGG 0.345137 7.1:-56667168 MS.gene96424:CDS
CAACAAGATGTTGAATTCAA+TGG 0.350188 7.1:-56667485 MS.gene96424:CDS
CTTGTGAAGAACTGAAATTA+GGG 0.351845 7.1:+56667297 None:intergenic
CAGCATCAACAACAATCAAT+TGG 0.353717 7.1:-56667245 MS.gene96424:CDS
AAGATACCCTTCTTGGATTC+GGG 0.361865 7.1:-56667047 MS.gene96424:CDS
TGTTTGGTGCAGAGGATTCC+TGG 0.364499 7.1:-56665880 MS.gene96424:CDS
TTTGCACTCCAGTCTTATTC+CGG 0.364854 7.1:-56666111 MS.gene96424:CDS
AGTTACCATTTGAAGAAATA+GGG 0.368741 7.1:+56667426 None:intergenic
TCACACGGCAGCGCCGGCGG+CGG 0.386625 7.1:-56667734 MS.gene96424:CDS
CGGGTCAAGAGATGTTTCTT+AGG 0.388186 7.1:-56667028 MS.gene96424:CDS
CAATCACCAAATTTCTCCTA+TGG 0.395643 7.1:-56666772 MS.gene96424:CDS
TATGTATTCTTCAAAGGGTA+AGG 0.404339 7.1:+56667958 None:intergenic
ACTTATAGACGCCGGTAATC+CGG 0.404547 7.1:-56666823 MS.gene96424:CDS
CTTGACCCTATTTCTTCAAA+TGG 0.407880 7.1:-56667431 MS.gene96424:CDS
AAAGATGTGGAATGGAAGAT+TGG 0.408700 7.1:-56667640 MS.gene96424:CDS
TTCTATCCTGCGAGCGCAAA+CGG 0.414907 7.1:+56665983 None:intergenic
GTGCGCGTGTTCCGGATTAC+CGG 0.417521 7.1:+56666812 None:intergenic
GGGAACCCTGGAAGCGGTGG+CGG 0.418143 7.1:-56666909 MS.gene96424:CDS
AGTCTCTGAATTCTGTTTCG+TGG 0.422058 7.1:-56666314 MS.gene96424:CDS
AATATCCCGTGCGCGTGTTC+CGG 0.422409 7.1:+56666804 None:intergenic
ATCGGTAGAAGCGCCGCCGC+CGG 0.426995 7.1:+56667721 None:intergenic
ATGGCGCCTAAGCAGAAAAT+GGG 0.428884 7.1:-56666930 MS.gene96424:CDS
AGAGTCGCAGGCAGAGTGTT+TGG 0.429838 7.1:-56665896 MS.gene96424:CDS
CTTGAATCACTTGATGCTGT+TGG 0.430566 7.1:-56666084 MS.gene96424:CDS
AAATTTGAAAACTGCAGAAC+AGG 0.433172 7.1:+56666600 None:intergenic
CCACAGCTTCAAGCAATGCT+TGG 0.439953 7.1:+56666568 None:intergenic
AACTTGTGGTATGTTTCTGT+TGG 0.440631 7.1:+56667670 None:intergenic
TCGATCATCTGAAGGACATC+CGG 0.441979 7.1:+56666048 None:intergenic
TTCATCCCTCTACTAGCAAA+AGG 0.442041 7.1:+56667332 None:intergenic
TAATTTGAGAAAGAGCAAAT+AGG 0.442683 7.1:+56666249 None:intergenic
ACTAGCCTCTTGCTCAAGAT+TGG 0.445518 7.1:-56666651 MS.gene96424:CDS
GCCGCCGGCGCTGCCGTGTG+AGG 0.446390 7.1:+56667736 None:intergenic
ATCTCATCTCGGTTTCAACT+TGG 0.447156 7.1:-56665798 MS.gene96424:CDS
TTTCCTATGTATTCTTCAAA+GGG 0.453051 7.1:+56667953 None:intergenic
TCACAAGTTTCACTTTCTCA+TGG 0.465348 7.1:-56667281 MS.gene96424:CDS
GGTGCAGAGGATTCCTGGTA+GGG 0.470286 7.1:-56665875 MS.gene96424:CDS
ATCAAGTGATTCAAGCAAAC+CGG 0.470386 7.1:+56666092 None:intergenic
TCGCAATCGCGTAGTGGCTG+CGG 0.474481 7.1:+56666291 None:intergenic
TAAAAGGCAGCCCTTTGAAA+AGG 0.479249 7.1:+56666744 None:intergenic
GCCTAAAATTGTCGTAACAT+TGG 0.480828 7.1:-56666181 MS.gene96424:CDS
AGGGAAAATTGTTGCTATGC+GGG 0.481377 7.1:-56667842 MS.gene96424:CDS
CTCGATTTCGTCGTGGTGTG+AGG 0.481816 7.1:+56666416 None:intergenic
AAGATGTGGAATGGAAGATT+GGG 0.482044 7.1:-56667639 MS.gene96424:CDS
CGCAGGATAGAACACTTCCC+TGG 0.482072 7.1:-56665972 MS.gene96424:CDS
AGCTTCAAGCAATGCTTGGT+TGG 0.488113 7.1:+56666572 None:intergenic
TTTGAAGAATACATAGGAAA+AGG 0.490303 7.1:-56667950 MS.gene96424:CDS
GGTTAGGTATAAACTGAGCT+TGG 0.491230 7.1:+56667177 None:intergenic
AGCATCAACAACAATCAATT+GGG 0.491428 7.1:-56667244 MS.gene96424:CDS
TTTGGGCCGTTTGCGCTCGC+AGG 0.491743 7.1:-56665989 MS.gene96424:CDS
TGGTGCAGAGGATTCCTGGT+AGG 0.496504 7.1:-56665876 MS.gene96424:CDS
ACGCGATTGCGAAGCAGTTG+TGG 0.497464 7.1:-56666280 MS.gene96424:CDS
AGCACTAAAGGCAGGTATGA+AGG 0.498213 7.1:+56666225 None:intergenic
ATCTTGAGCAAGAGGCTAGT+TGG 0.505941 7.1:+56666654 None:intergenic
CCATTGTCCTCTGCTGCAGA+TGG 0.506974 7.1:+56666949 None:intergenic
CGAGAAATACTATCTTCAAC+CGG 0.509431 7.1:-56666028 MS.gene96424:CDS
AATCACCAAATTTCTCCTAT+GGG 0.509811 7.1:-56666771 MS.gene96424:CDS
GAATCCAAGAAGGGTATCTT+CGG 0.510787 7.1:+56667050 None:intergenic
CGGTGGCGGCGAAGATGTAT+CGG 0.512246 7.1:-56666895 MS.gene96424:CDS
CGATCATCTGAAGGACATCC+GGG 0.514286 7.1:+56666049 None:intergenic
ACAATGGTCTTCATTTATGC+AGG 0.517675 7.1:-56666496 MS.gene96424:CDS
GTGCAGAGGATTCCTGGTAG+GGG 0.518621 7.1:-56665874 MS.gene96424:CDS
TCCTCACACGGCAGCGCCGG+CGG 0.519299 7.1:-56667737 MS.gene96424:CDS
AGAAACATACCACAAGTTGA+AGG 0.520739 7.1:-56667665 MS.gene96424:CDS
TTACCCTTTGAAGAATACAT+AGG 0.522370 7.1:-56667956 MS.gene96424:CDS
AAAACAAGCTTCTCAACTGC+CGG 0.524789 7.1:+56666009 None:intergenic
CCAAGCATTGCTTGAAGCTG+TGG 0.524919 7.1:-56666568 MS.gene96424:CDS
CTTCGCCGCCACCGCTTCCA+GGG 0.526440 7.1:+56666904 None:intergenic
AGAACTCACTTGTCTTGTGT+TGG 0.527376 7.1:-56665831 MS.gene96424:CDS
CACTTGTCTTGTGTTGGCAA+AGG 0.532124 7.1:-56665825 MS.gene96424:CDS
ATGGGGAACCCTGGAAGCGG+TGG 0.534973 7.1:-56666912 MS.gene96424:CDS
TCATCCCTCTACTAGCAAAA+GGG 0.536599 7.1:+56667333 None:intergenic
TGTCTTGTGTTGGCAAAGGA+AGG 0.536796 7.1:-56665821 MS.gene96424:CDS
TAGTAACTTCACAGAGTCGC+AGG 0.538196 7.1:-56665908 MS.gene96424:CDS
GACAGTGTTGAGGATGAAGT+AGG 0.538311 7.1:+56667761 None:intergenic
CTCTTGACCCGAATCCAAGA+AGG 0.539089 7.1:+56667040 None:intergenic
CAAGCAAACCGGAATAAGAC+TGG 0.539954 7.1:+56666103 None:intergenic
TCCACATGGAATCCCCTACC+AGG 0.543648 7.1:+56665862 None:intergenic
GATATTGAAGATGCATCTAT+GGG 0.546979 7.1:-56667551 MS.gene96424:CDS
AAGCACCAATCTTGAGCAAG+AGG 0.549041 7.1:+56666646 None:intergenic
CTTTGAAAAGGCTTCCCCAT+AGG 0.549307 7.1:+56666756 None:intergenic
CAAGTTTCACTTTCTCATGG+TGG 0.549648 7.1:-56667278 MS.gene96424:CDS
TGAAGGTAAAAGATGTGGAA+TGG 0.553057 7.1:-56667648 MS.gene96424:CDS
AAAATCATGTGCTGAGGAAA+CGG 0.554908 7.1:+56666132 None:intergenic
TTCCTCACCATCTGCAGCAG+AGG 0.556566 7.1:-56666956 MS.gene96424:CDS
ATCGGCTCATCAGTTTCAGC+AGG 0.556576 7.1:-56666877 MS.gene96424:CDS
TTCACGAATCGAAGCACTAA+AGG 0.557184 7.1:+56666213 None:intergenic
TGTTGAGGATGAAGTAGGAG+TGG 0.560505 7.1:+56667766 None:intergenic
TCGATTTCGTCGTGGTGTGA+GGG 0.560923 7.1:+56666417 None:intergenic
GTCAAGAGATGTTTCTTAGG+AGG 0.562943 7.1:-56667025 MS.gene96424:CDS
AGGCAGAGTGTTTGGTGCAG+AGG 0.564913 7.1:-56665888 MS.gene96424:CDS
GAATGATCTTGATCTTGACT+TGG 0.565052 7.1:+56667596 None:intergenic
GCACTAAAGGCAGGTATGAA+GGG 0.565237 7.1:+56666226 None:intergenic
AAGCAGAAAATGGGGAACCC+TGG 0.568423 7.1:-56666921 MS.gene96424:CDS
TCTTCCTCACACGGCAGCGC+CGG 0.568950 7.1:-56667740 MS.gene96424:CDS
GAGAATCTGAAGCAATATGC+TGG 0.570600 7.1:-56666378 MS.gene96424:CDS
AATCTCAGCAGCAGTAGCAG+TGG 0.572943 7.1:+56667367 None:intergenic
GGTAATCCGGAACACGCGCA+CGG 0.575492 7.1:-56666810 MS.gene96424:CDS
GTCCTCTGCTGCAGATGGTG+AGG 0.576808 7.1:+56666954 None:intergenic
GAGGCTGAAGCTGAATCTCT+CGG 0.577024 7.1:+56667111 None:intergenic
CAAGTTGAAGGTAAAAGATG+TGG 0.580900 7.1:-56667653 MS.gene96424:CDS
AAAACCTACTCTTGTCATCA+GGG 0.582681 7.1:-56665948 MS.gene96424:CDS
GCATTGCTTGAAGCTGTGGA+AGG 0.584725 7.1:-56666564 MS.gene96424:CDS
CGAATCGAAGCACTAAAGGC+AGG 0.590451 7.1:+56666217 None:intergenic
GTAATCCGGAACACGCGCAC+GGG 0.591224 7.1:-56666809 MS.gene96424:CDS
GCAAAGGAAGGATCTCATCT+CGG 0.596929 7.1:-56665809 MS.gene96424:CDS
AGTATTTCTCGATCATCTGA+AGG 0.598913 7.1:+56666040 None:intergenic
GCTTCTACCGATAGCACCAC+CGG 0.599672 7.1:-56667710 MS.gene96424:CDS
GGATAGGAGTTGTGATCGAA+CGG 0.600755 7.1:-56666160 MS.gene96424:CDS
ATGTATTCTTCAAAGGGTAA+GGG 0.603369 7.1:+56667959 None:intergenic
CCATCTGCAGCAGAGGACAA+TGG 0.604634 7.1:-56666949 MS.gene96424:CDS
TTATGCAGGAGTTAGCACTA+AGG 0.606201 7.1:-56666482 MS.gene96424:CDS
AGTTCTGCTTCTTCTCCACA+TGG 0.609894 7.1:+56665848 None:intergenic
AAAATGGGGAACCCTGGAAG+CGG 0.610138 7.1:-56666915 MS.gene96424:CDS
TGCAGCTGAGAGTGTGTGAA+AGG 0.610994 7.1:+56667140 None:intergenic
AAATTGTCGTAACATTGGAT+AGG 0.615531 7.1:-56666176 MS.gene96424:CDS
TCAACACTGTCTTCCTCACA+CGG 0.617431 7.1:-56667749 MS.gene96424:CDS
ACGCGCACGGGATATTGGCG+CGG 0.617795 7.1:-56666797 MS.gene96424:CDS
AGAACCCTGATGACAAGAGT+AGG 0.623547 7.1:+56665944 None:intergenic
CAGGAGTTAGCACTAAGGAA+TGG 0.623926 7.1:-56666477 MS.gene96424:CDS
GTGAAGTTACTAAATGTCAA+CGG 0.630606 7.1:+56665919 None:intergenic
TCTTGACCCGAATCCAAGAA+GGG 0.632079 7.1:+56667041 None:intergenic
ATCACCAAATTTCTCCTATG+GGG 0.632427 7.1:-56666770 MS.gene96424:CDS
TGGTTCATAACAAACTGATG+AGG 0.638887 7.1:+56667203 None:intergenic
TCCTGGTAGGGGATTCCATG+TGG 0.639151 7.1:-56665863 MS.gene96424:CDS
ACTGCTTCGCAATCGCGTAG+TGG 0.643756 7.1:+56666285 None:intergenic
AATGCAGTGATCTTGAGTGC+AGG 0.644744 7.1:+56666447 None:intergenic
GAGGGAAAATTGTTGCTATG+CGG 0.647727 7.1:-56667843 MS.gene96424:CDS
GAGTTAGCACTAAGGAATGG+TGG 0.649571 7.1:-56666474 MS.gene96424:CDS
CCAGCTAAAAGACTCAATTG+TGG 0.675226 7.1:-56667089 MS.gene96424:CDS
TGTTGGTGTTAATGTCCACC+CGG 0.676306 7.1:-56666067 MS.gene96424:CDS
TGGCGCCTAAGCAGAAAATG+GGG 0.686084 7.1:-56666929 MS.gene96424:CDS
GCTGCAGAACTTATAGACGC+CGG 0.689078 7.1:-56666831 MS.gene96424:CDS
AACTAAGCTCGATTTCGTCG+TGG 0.700452 7.1:+56666409 None:intergenic
TCATCTGAAGGACATCCGGG+TGG 0.719806 7.1:+56666052 None:intergenic
GTGTGAGGAAGACAGTGTTG+AGG 0.771629 7.1:+56667751 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATATAATAGATTTTGATAT+TGG - chr7.1:56667232-56667251 MS.gene96424:CDS 15.0%
!! TTCCATATTGAAATTGATAA+TGG - chr7.1:56666184-56666203 MS.gene96424:CDS 20.0%
!! TTCCATTATCAATTTCAATA+TGG + chr7.1:56666189-56666208 None:intergenic 20.0%
!!! ATAGATTTTGATATTGGTTT+TGG - chr7.1:56667238-56667257 MS.gene96424:CDS 20.0%
!!! ATTCAATGGTTTTAGTTTTA+TGG - chr7.1:56666289-56666308 MS.gene96424:CDS 20.0%
! AAATGCCTCCTTAAAATAAA+AGG + chr7.1:56667035-56667054 None:intergenic 25.0%
! AAGTTACCATTTGAAGAAAT+AGG + chr7.1:56666338-56666357 None:intergenic 25.0%
! AGTTACCATTTGAAGAAATA+GGG + chr7.1:56666337-56666356 None:intergenic 25.0%
! TAATTTGAGAAAGAGCAAAT+AGG + chr7.1:56667514-56667533 None:intergenic 25.0%
! TCAAAAACAACAACAGAATT+GGG + chr7.1:56665951-56665970 None:intergenic 25.0%
! TTTCCTATGTATTCTTCAAA+GGG + chr7.1:56665810-56665829 None:intergenic 25.0%
! TTTGAAGAATACATAGGAAA+AGG - chr7.1:56665810-56665829 MS.gene96424:CDS 25.0%
!! TATAATTGATCAGCTTTTCA+AGG - chr7.1:56666907-56666926 MS.gene96424:CDS 25.0%
!! TTTTCCTATGTATTCTTCAA+AGG + chr7.1:56665811-56665830 None:intergenic 25.0%
!!! TTTGTTGATTTGGTTTTTTG+AGG + chr7.1:56665974-56665993 None:intergenic 25.0%
AAATTGTCGTAACATTGGAT+AGG - chr7.1:56667584-56667603 MS.gene96424:CDS 30.0%
AAATTTGAAAACTGCAGAAC+AGG + chr7.1:56667163-56667182 None:intergenic 30.0%
AATCACCAAATTTCTCCTAT+GGG - chr7.1:56666989-56667008 MS.gene96424:CDS 30.0%
ACTTGTGAAGAACTGAAATT+AGG + chr7.1:56666467-56666486 None:intergenic 30.0%
AGATATTGAAGATGCATCTA+TGG - chr7.1:56666208-56666227 MS.gene96424:CDS 30.0%
AGCATCAACAACAATCAATT+GGG - chr7.1:56666516-56666535 MS.gene96424:CDS 30.0%
ATGTATTCTTCAAAGGGTAA+GGG + chr7.1:56665804-56665823 None:intergenic 30.0%
CAACAAGATGTTGAATTCAA+TGG - chr7.1:56666275-56666294 MS.gene96424:CDS 30.0%
CTTGTGAAGAACTGAAATTA+GGG + chr7.1:56666466-56666485 None:intergenic 30.0%
GATATTGAAGATGCATCTAT+GGG - chr7.1:56666209-56666228 MS.gene96424:CDS 30.0%
GTCAAAAACAACAACAGAAT+TGG + chr7.1:56665952-56665971 None:intergenic 30.0%
GTGAAGTTACTAAATGTCAA+CGG + chr7.1:56667844-56667863 None:intergenic 30.0%
TATGTATTCTTCAAAGGGTA+AGG + chr7.1:56665805-56665824 None:intergenic 30.0%
TGAAAGGAAAAACCAAACTA+GGG + chr7.1:56666607-56666626 None:intergenic 30.0%
! TCCAATGTTACGACAATTTT+AGG + chr7.1:56667583-56667602 None:intergenic 30.0%
! TTAAGCAAGCTTTTACAAGT+TGG - chr7.1:56666233-56666252 MS.gene96424:CDS 30.0%
! TTACCCTTTGAAGAATACAT+AGG - chr7.1:56665804-56665823 MS.gene96424:CDS 30.0%
!!! GATTTTGATATTGGTTTTGG+TGG - chr7.1:56667241-56667260 MS.gene96424:CDS 30.0%
AAAAACCTACTCTTGTCATC+AGG - chr7.1:56667811-56667830 MS.gene96424:CDS 35.0%
AAAACCTACTCTTGTCATCA+GGG - chr7.1:56667812-56667831 MS.gene96424:CDS 35.0%
AAAATCATGTGCTGAGGAAA+CGG + chr7.1:56667631-56667650 None:intergenic 35.0%
AAAGATGTGGAATGGAAGAT+TGG - chr7.1:56666120-56666139 MS.gene96424:CDS 35.0%
AAGATGTGGAATGGAAGATT+GGG - chr7.1:56666121-56666140 MS.gene96424:CDS 35.0%
ACAATGGTCTTCATTTATGC+AGG - chr7.1:56667264-56667283 MS.gene96424:CDS 35.0%
AGTATTTCTCGATCATCTGA+AGG + chr7.1:56667723-56667742 None:intergenic 35.0%
ATCAAGTGATTCAAGCAAAC+CGG + chr7.1:56667671-56667690 None:intergenic 35.0%
ATCACCAAATTTCTCCTATG+GGG - chr7.1:56666990-56667009 MS.gene96424:CDS 35.0%
CAATCACCAAATTTCTCCTA+TGG - chr7.1:56666988-56667007 MS.gene96424:CDS 35.0%
CAGCATCAACAACAATCAAT+TGG - chr7.1:56666515-56666534 MS.gene96424:CDS 35.0%
CGAGAAATACTATCTTCAAC+CGG - chr7.1:56667732-56667751 MS.gene96424:CDS 35.0%
GAATGATCTTGATCTTGACT+TGG + chr7.1:56666167-56666186 None:intergenic 35.0%
GCCTAAAATTGTCGTAACAT+TGG - chr7.1:56667579-56667598 MS.gene96424:CDS 35.0%
GTGAAAGGAAAAACCAAACT+AGG + chr7.1:56666608-56666627 None:intergenic 35.0%
GTTTATACCTAACCCTAGTT+TGG - chr7.1:56666592-56666611 MS.gene96424:CDS 35.0%
TCACAAGTTTCACTTTCTCA+TGG - chr7.1:56666479-56666498 MS.gene96424:CDS 35.0%
TGAAGGTAAAAGATGTGGAA+TGG - chr7.1:56666112-56666131 MS.gene96424:CDS 35.0%
TGGTTCATAACAAACTGATG+AGG + chr7.1:56666560-56666579 None:intergenic 35.0%
! AACTTGTGGTATGTTTCTGT+TGG + chr7.1:56666093-56666112 None:intergenic 35.0%
! AAGAACAGTTTTTGCAAAGG+TGG - chr7.1:56665895-56665914 MS.gene96424:CDS 35.0%
! AGAAACATACCACAAGTTGA+AGG - chr7.1:56666095-56666114 MS.gene96424:CDS 35.0%
! AGCAAGAACAGTTTTTGCAA+AGG - chr7.1:56665892-56665911 MS.gene96424:CDS 35.0%
! ATTTCCCTTTTGCTAGTAGA+GGG - chr7.1:56666423-56666442 MS.gene96424:CDS 35.0%
! CAAGTTGAAGGTAAAAGATG+TGG - chr7.1:56666107-56666126 MS.gene96424:CDS 35.0%
! CATCTTTTACCTTCAACTTG+TGG + chr7.1:56666107-56666126 None:intergenic 35.0%
! CTTGACCCTATTTCTTCAAA+TGG - chr7.1:56666329-56666348 MS.gene96424:CDS 35.0%
! GTATAAACTGAGCTTGGTTT+TGG + chr7.1:56666580-56666599 None:intergenic 35.0%
!! GGAAAAGGTGTGTTAGATTT+TGG - chr7.1:56665825-56665844 MS.gene96424:CDS 35.0%
!!! AAGGGCTGCCTTTTATTTTA+AGG - chr7.1:56667024-56667043 MS.gene96424:CDS 35.0%
!!! ATATTGGTTTTGGTGGACAA+TGG - chr7.1:56667248-56667267 MS.gene96424:CDS 35.0%
AAAACAAGCTTCTCAACTGC+CGG + chr7.1:56667754-56667773 None:intergenic 40.0%
AAGATACCCTTCTTGGATTC+GGG - chr7.1:56666713-56666732 MS.gene96424:CDS 40.0%
AATTCCGAAGATACCCTTCT+TGG - chr7.1:56666706-56666725 MS.gene96424:CDS 40.0%
AGAACTCACTTGTCTTGTGT+TGG - chr7.1:56667929-56667948 MS.gene96424:CDS 40.0%
AGGGAAAATTGTTGCTATGC+GGG - chr7.1:56665918-56665937 MS.gene96424:CDS 40.0%
AGTCTCTGAATTCTGTTTCG+TGG - chr7.1:56667446-56667465 MS.gene96424:CDS 40.0%
AGTGCAAAAATCATGTGCTG+AGG + chr7.1:56667637-56667656 None:intergenic 40.0%
ATCTCATCTCGGTTTCAACT+TGG - chr7.1:56667962-56667981 MS.gene96424:CDS 40.0%
CAAGTTTCACTTTCTCATGG+TGG - chr7.1:56666482-56666501 MS.gene96424:CDS 40.0%
CCAGCTAAAAGACTCAATTG+TGG - chr7.1:56666671-56666690 MS.gene96424:CDS 40.0%
CTTGAATCACTTGATGCTGT+TGG - chr7.1:56667676-56667695 MS.gene96424:CDS 40.0%
GAAGATACCCTTCTTGGATT+CGG - chr7.1:56666712-56666731 MS.gene96424:CDS 40.0%
GAGGGAAAATTGTTGCTATG+CGG - chr7.1:56665917-56665936 MS.gene96424:CDS 40.0%
GGAAAAACCAAACTAGGGTT+AGG + chr7.1:56666602-56666621 None:intergenic 40.0%
GGTTAGGTATAAACTGAGCT+TGG + chr7.1:56666586-56666605 None:intergenic 40.0%
GTCAAGAGATGTTTCTTAGG+AGG - chr7.1:56666735-56666754 MS.gene96424:CDS 40.0%
TCATCCCTCTACTAGCAAAA+GGG + chr7.1:56666430-56666449 None:intergenic 40.0%
TTATGCAGGAGTTAGCACTA+AGG - chr7.1:56667278-56667297 MS.gene96424:CDS 40.0%
TTCATCCCTCTACTAGCAAA+AGG + chr7.1:56666431-56666450 None:intergenic 40.0%
! AACAGTTTTTGCAAAGGTGG+AGG - chr7.1:56665898-56665917 MS.gene96424:CDS 40.0%
! ACAGTTTTTGCAAAGGTGGA+GGG - chr7.1:56665899-56665918 MS.gene96424:CDS 40.0%
! CCACAATTGAGTCTTTTAGC+TGG + chr7.1:56666674-56666693 None:intergenic 40.0%
! GACAAGAGTAGGTTTTTCCA+GGG + chr7.1:56667808-56667827 None:intergenic 40.0%
! GAGAATCTGAAGCAATATGC+TGG - chr7.1:56667382-56667401 MS.gene96424:CDS 40.0%
! GATTTCCCTTTTGCTAGTAG+AGG - chr7.1:56666422-56666441 MS.gene96424:CDS 40.0%
! TAAAAGGCAGCCCTTTGAAA+AGG + chr7.1:56667019-56667038 None:intergenic 40.0%
! TATGGGGAAGCCTTTTCAAA+GGG - chr7.1:56667006-56667025 MS.gene96424:CDS 40.0%
! TGACAAGAGTAGGTTTTTCC+AGG + chr7.1:56667809-56667828 None:intergenic 40.0%
! TTCACGAATCGAAGCACTAA+AGG + chr7.1:56667550-56667569 None:intergenic 40.0%
!! CAATTGAGTCTTTTAGCTGG+AGG + chr7.1:56666671-56666690 None:intergenic 40.0%
!! GAATCCAAGAAGGGTATCTT+CGG + chr7.1:56666713-56666732 None:intergenic 40.0%
!! GCAGTTGAGAAGCTTGTTTT+GGG - chr7.1:56667754-56667773 MS.gene96424:CDS 40.0%
!! GTAGGAGTGGTTTGTTGATT+TGG + chr7.1:56665984-56666003 None:intergenic 40.0%
!! TTTGCACTCCAGTCTTATTC+CGG - chr7.1:56667649-56667668 MS.gene96424:CDS 40.0%
!!! GGCTGCCTTTTATTTTAAGG+AGG - chr7.1:56667027-56667046 MS.gene96424:CDS 40.0%
AACTAAGCTCGATTTCGTCG+TGG + chr7.1:56667354-56667373 None:intergenic 45.0%
AAGCACCAATCTTGAGCAAG+AGG + chr7.1:56667117-56667136 None:intergenic 45.0%
AATGCAGTGATCTTGAGTGC+AGG + chr7.1:56667316-56667335 None:intergenic 45.0%
AATGGCGCCTAAGCAGAAAA+TGG - chr7.1:56666829-56666848 MS.gene96424:CDS 45.0%
ACTTATAGACGCCGGTAATC+CGG - chr7.1:56666937-56666956 MS.gene96424:CDS 45.0%
AGAACCCTGATGACAAGAGT+AGG + chr7.1:56667819-56667838 None:intergenic 45.0%
AGCACTAAAGGCAGGTATGA+AGG + chr7.1:56667538-56667557 None:intergenic 45.0%
AGCTTCAAGCAATGCTTGGT+TGG + chr7.1:56667191-56667210 None:intergenic 45.0%
AGTTCTGCTTCTTCTCCACA+TGG + chr7.1:56667915-56667934 None:intergenic 45.0%
ATCTTGAGCAAGAGGCTAGT+TGG + chr7.1:56667109-56667128 None:intergenic 45.0%
ATGGCGCCTAAGCAGAAAAT+GGG - chr7.1:56666830-56666849 MS.gene96424:CDS 45.0%
CAAGCAAACCGGAATAAGAC+TGG + chr7.1:56667660-56667679 None:intergenic 45.0%
CAGGAGTTAGCACTAAGGAA+TGG - chr7.1:56667283-56667302 MS.gene96424:CDS 45.0%
CGGGTCAAGAGATGTTTCTT+AGG - chr7.1:56666732-56666751 MS.gene96424:CDS 45.0%
GAGTTAGCACTAAGGAATGG+TGG - chr7.1:56667286-56667305 MS.gene96424:CDS 45.0%
GCAAAGGAAGGATCTCATCT+CGG - chr7.1:56667951-56667970 MS.gene96424:CDS 45.0%
GCACTAAAGGCAGGTATGAA+GGG + chr7.1:56667537-56667556 None:intergenic 45.0%
GCTTCCCCATAGGAGAAATT+TGG + chr7.1:56666997-56667016 None:intergenic 45.0%
GGATAGGAGTTGTGATCGAA+CGG - chr7.1:56667600-56667619 MS.gene96424:CDS 45.0%
TAGTAACTTCACAGAGTCGC+AGG - chr7.1:56667852-56667871 MS.gene96424:CDS 45.0%
TCAACACTGTCTTCCTCACA+CGG - chr7.1:56666011-56666030 MS.gene96424:CDS 45.0%
TCGATCATCTGAAGGACATC+CGG + chr7.1:56667715-56667734 None:intergenic 45.0%
TCTTGACCCGAATCCAAGAA+GGG + chr7.1:56666722-56666741 None:intergenic 45.0%
TGTTGAGGATGAAGTAGGAG+TGG + chr7.1:56665997-56666016 None:intergenic 45.0%
! ACTAGCCTCTTGCTCAAGAT+TGG - chr7.1:56667109-56667128 MS.gene96424:CDS 45.0%
! CACTTGTCTTGTGTTGGCAA+AGG - chr7.1:56667935-56667954 MS.gene96424:CDS 45.0%
! CTATGGGGAAGCCTTTTCAA+AGG - chr7.1:56667005-56667024 MS.gene96424:CDS 45.0%
! CTTTGAAAAGGCTTCCCCAT+AGG + chr7.1:56667007-56667026 None:intergenic 45.0%
! GACAGTGTTGAGGATGAAGT+AGG + chr7.1:56666002-56666021 None:intergenic 45.0%
! TGTCTTGTGTTGGCAAAGGA+AGG - chr7.1:56667939-56667958 MS.gene96424:CDS 45.0%
!! GGCAGTTGAGAAGCTTGTTT+TGG - chr7.1:56667753-56667772 MS.gene96424:CDS 45.0%
!! TGTTGGTGTTAATGTCCACC+CGG - chr7.1:56667693-56667712 MS.gene96424:CDS 45.0%
!!! GGTGTTGTTATCTTTTGCGC+CGG + chr7.1:56666072-56666091 None:intergenic 45.0%
AAAATGGGGAACCCTGGAAG+CGG - chr7.1:56666845-56666864 MS.gene96424:CDS 50.0%
AAGCAGAAAATGGGGAACCC+TGG - chr7.1:56666839-56666858 MS.gene96424:CDS 50.0%
AATCTCAGCAGCAGTAGCAG+TGG + chr7.1:56666396-56666415 None:intergenic 50.0%
CCACAGCTTCAAGCAATGCT+TGG + chr7.1:56667195-56667214 None:intergenic 50.0%
CGATCATCTGAAGGACATCC+GGG + chr7.1:56667714-56667733 None:intergenic 50.0%
CTCTTGACCCGAATCCAAGA+AGG + chr7.1:56666723-56666742 None:intergenic 50.0%
GAGGCTGAAGCTGAATCTCT+CGG + chr7.1:56666652-56666671 None:intergenic 50.0%
GCATTGCTTGAAGCTGTGGA+AGG - chr7.1:56667196-56667215 MS.gene96424:CDS 50.0%
GCTGCAGAACTTATAGACGC+CGG - chr7.1:56666929-56666948 MS.gene96424:CDS 50.0%
GTGTGAGGAAGACAGTGTTG+AGG + chr7.1:56666012-56666031 None:intergenic 50.0%
TCGATTTCGTCGTGGTGTGA+GGG + chr7.1:56667346-56667365 None:intergenic 50.0%
TGGCGCCTAAGCAGAAAATG+GGG - chr7.1:56666831-56666850 MS.gene96424:CDS 50.0%
TTCTATCCTGCGAGCGCAAA+CGG + chr7.1:56667780-56667799 None:intergenic 50.0%
! ATCGGCTCATCAGTTTCAGC+AGG - chr7.1:56666883-56666902 MS.gene96424:CDS 50.0%
! CCAAGCATTGCTTGAAGCTG+TGG - chr7.1:56667192-56667211 MS.gene96424:CDS 50.0%
! CGAATCGAAGCACTAAAGGC+AGG + chr7.1:56667546-56667565 None:intergenic 50.0%
! GGGTTCCCCATTTTCTGCTT+AGG + chr7.1:56666839-56666858 None:intergenic 50.0%
! GTTGTTATCTTTTGCGCCGG+TGG + chr7.1:56666069-56666088 None:intergenic 50.0%
! TGCAGCTGAGAGTGTGTGAA+AGG + chr7.1:56666623-56666642 None:intergenic 50.0%
!! TGTTTGGTGCAGAGGATTCC+TGG - chr7.1:56667880-56667899 MS.gene96424:CDS 50.0%
AATATCCCGTGCGCGTGTTC+CGG + chr7.1:56666959-56666978 None:intergenic 55.0%
ACGCGATTGCGAAGCAGTTG+TGG - chr7.1:56667480-56667499 MS.gene96424:CDS 55.0%
ACTGCTTCGCAATCGCGTAG+TGG + chr7.1:56667478-56667497 None:intergenic 55.0%
CCATCTGCAGCAGAGGACAA+TGG - chr7.1:56666811-56666830 MS.gene96424:CDS 55.0%
CCATTGTCCTCTGCTGCAGA+TGG + chr7.1:56666814-56666833 None:intergenic 55.0%
CGCAGGATAGAACACTTCCC+TGG - chr7.1:56667788-56667807 MS.gene96424:CDS 55.0%
CTCGATTTCGTCGTGGTGTG+AGG + chr7.1:56667347-56667366 None:intergenic 55.0%
GCTTCTACCGATAGCACCAC+CGG - chr7.1:56666050-56666069 MS.gene96424:CDS 55.0%
GGTGCAGAGGATTCCTGGTA+GGG - chr7.1:56667885-56667904 MS.gene96424:CDS 55.0%
GTGCAGAGGATTCCTGGTAG+GGG - chr7.1:56667886-56667905 MS.gene96424:CDS 55.0%
TCATCTGAAGGACATCCGGG+TGG + chr7.1:56667711-56667730 None:intergenic 55.0%
TCCACATGGAATCCCCTACC+AGG + chr7.1:56667901-56667920 None:intergenic 55.0%
TCCTGGTAGGGGATTCCATG+TGG - chr7.1:56667897-56667916 MS.gene96424:CDS 55.0%
TGGTGCAGAGGATTCCTGGT+AGG - chr7.1:56667884-56667903 MS.gene96424:CDS 55.0%
TTCCTCACCATCTGCAGCAG+AGG - chr7.1:56666804-56666823 MS.gene96424:CDS 55.0%
! AGAGTCGCAGGCAGAGTGTT+TGG - chr7.1:56667864-56667883 MS.gene96424:CDS 55.0%
!! AGGCAGAGTGTTTGGTGCAG+AGG - chr7.1:56667872-56667891 MS.gene96424:CDS 55.0%
!!! TTTTGCGCCGGTGGTGCTAT+CGG + chr7.1:56666060-56666079 None:intergenic 55.0%
GGAACACGCGCACGGGATAT+TGG - chr7.1:56666958-56666977 MS.gene96424:CDS 60.0%
GGTAATCCGGAACACGCGCA+CGG - chr7.1:56666950-56666969 MS.gene96424:CDS 60.0%
GTAATCCGGAACACGCGCAC+GGG - chr7.1:56666951-56666970 MS.gene96424:CDS 60.0%
GTCCTCTGCTGCAGATGGTG+AGG + chr7.1:56666809-56666828 None:intergenic 60.0%
GTGCGCGTGTTCCGGATTAC+CGG + chr7.1:56666951-56666970 None:intergenic 60.0%
TCGCAATCGCGTAGTGGCTG+CGG + chr7.1:56667472-56667491 None:intergenic 60.0%
! CGGTGGCGGCGAAGATGTAT+CGG - chr7.1:56666865-56666884 MS.gene96424:CDS 60.0%
ACGCGCACGGGATATTGGCG+CGG - chr7.1:56666963-56666982 MS.gene96424:CDS 65.0%
ATGGGGAACCCTGGAAGCGG+TGG - chr7.1:56666848-56666867 MS.gene96424:CDS 65.0%
TCTTCCTCACACGGCAGCGC+CGG - chr7.1:56666020-56666039 MS.gene96424:CDS 65.0%
TTTGGGCCGTTTGCGCTCGC+AGG - chr7.1:56667771-56667790 MS.gene96424:CDS 65.0%
CTTCGCCGCCACCGCTTCCA+GGG + chr7.1:56666859-56666878 None:intergenic 70.0%
GGGAACCCTGGAAGCGGTGG+CGG - chr7.1:56666851-56666870 MS.gene96424:CDS 70.0%
TCTTCGCCGCCACCGCTTCC+AGG + chr7.1:56666860-56666879 None:intergenic 70.0%
!! ATCGGTAGAAGCGCCGCCGC+CGG + chr7.1:56666042-56666061 None:intergenic 70.0%
! TCCTCACACGGCAGCGCCGG+CGG - chr7.1:56666023-56666042 MS.gene96424:CDS 75.0%
!!! TCACACGGCAGCGCCGGCGG+CGG - chr7.1:56666026-56666045 MS.gene96424:CDS 80.0%
! GCCGCCGGCGCTGCCGTGTG+AGG + chr7.1:56666027-56666046 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 56665789 56667993 56665789 ID=MS.gene96424
chr7.1 mRNA 56665789 56667993 56665789 ID=MS.gene96424.t1;Parent=MS.gene96424
chr7.1 exon 56665789 56667993 56665789 ID=MS.gene96424.t1.exon1;Parent=MS.gene96424.t1
chr7.1 CDS 56665789 56667993 56665789 ID=cds.MS.gene96424.t1;Parent=MS.gene96424.t1
Gene Sequence

>MS.gene96424

ATGAAGGCTATGCCCTTACCCTTTGAAGAATACATAGGAAAAGGTGTGTTAGATTTTGGTTCAAGTGTTGTTGCTTCTTCAGATTCATATTTGTTTTCACAACAGCAAGAACAGTTTTTGCAAAGGTGGAGGGAAAATTGTTGCTATGCGGGCATTGAGCCCAATTCTGTTGTTGTTTTTGACCTCAAAAAACCAAATCAACAAACCACTCCTACTTCATCCTCAACACTGTCTTCCTCACACGGCAGCGCCGGCGGCGGCGCTTCTACCGATAGCACCACCGGCGCAAAAGATAACAACACCAACAGAAACATACCACAAGTTGAAGGTAAAAGATGTGGAATGGAAGATTGGGAGAGTGTGTTATCTGAATCACCAAGTCAAGATCAAGATCATTCCATATTGAAATTGATAATGGAAGATATTGAAGATGCATCTATGGGATTAAGCAAGCTTTTACAAGTTGGAACTAGTAATTCTCATTCTCAACAAGATGTTGAATTCAATGGTTTTAGTTTTATGGATCAACAAAGTTCTGTACTTGACCCTATTTCTTCAAATGGTAACTTTGTAACTAGCATTGATTCTTCTTCTGTTGTTGCTACCACTGCTACTGCTGCTGAGATTTGTTCTGATTTCCCTTTTGCTAGTAGAGGGATGAATCAAATTCAAAACCCTAATTTCAGTTCTTCACAAGTTTCACTTTCTCATGGTGGTTTGTTTCATCAGCATCAACAACAATCAATTGGGTCTCTTGATGAGAAGCTACCTCATCAGTTTGTTATGAACCAAAACCAAGCTCAGTTTATACCTAACCCTAGTTTGGTTTTTCCTTTCACACACTCTCAGCTGCAAGAAAACCGAGAGATTCAGCTTCAGCCTCCAGCTAAAAGACTCAATTGTGGAACAAATTATGAAATTCCGAAGATACCCTTCTTGGATTCGGGTCAAGAGATGTTTCTTAGGAGGCAACAACAGCATCAGCAACAGCAACATCAGCAGCAGCTTCAACTGCTTCCTCACCATCTGCAGCAGAGGACAATGGCGCCTAAGCAGAAAATGGGGAACCCTGGAAGCGGTGGCGGCGAAGATGTATCGGCTCATCAGTTTCAGCAGGCTATAATTGATCAGCTTTTCAAGGCTGCAGAACTTATAGACGCCGGTAATCCGGAACACGCGCACGGGATATTGGCGCGGCTCAATCACCAAATTTCTCCTATGGGGAAGCCTTTTCAAAGGGCTGCCTTTTATTTTAAGGAGGCATTTCAATTGCTTCTTCAATCAAATGTCAACAACAGCAACAACAACAGCTTTTCACCAACTAGCCTCTTGCTCAAGATTGGTGCTTATAAATCATTCTCAGAAATCTCACCTGTTCTGCAGTTTTCAAATTTCACTTCCAACCAAGCATTGCTTGAAGCTGTGGAAGGTTTCGATCGAATTCATATAATAGATTTTGATATTGGTTTTGGTGGACAATGGTCTTCATTTATGCAGGAGTTAGCACTAAGGAATGGTGGTGCACCTGCACTCAAGATCACTGCATTTGTTTCGCCCTCACACCACGACGAAATCGAGCTTAGTTTCACTAACGAGAATCTGAAGCAATATGCTGGTGAAATTAACATGTCATTTGAGCTCGAAATTCTGACACTTGAGTCTCTGAATTCTGTTTCGTGGCCGCAGCCACTACGCGATTGCGAAGCAGTTGTGGTTAACTTGCCTATTTGCTCTTTCTCAAATTACCCTTCATACCTGCCTTTAGTGCTTCGATTCGTGAAGCAGCTAATGCCTAAAATTGTCGTAACATTGGATAGGAGTTGTGATCGAACGGATGCACCGTTTCCTCAGCACATGATTTTTGCACTCCAGTCTTATTCCGGTTTGCTTGAATCACTTGATGCTGTTGGTGTTAATGTCCACCCGGATGTCCTTCAGATGATCGAGAAATACTATCTTCAACCGGCAGTTGAGAAGCTTGTTTTGGGCCGTTTGCGCTCGCAGGATAGAACACTTCCCTGGAAAAACCTACTCTTGTCATCAGGGTTCTCGCCGTTGACATTTAGTAACTTCACAGAGTCGCAGGCAGAGTGTTTGGTGCAGAGGATTCCTGGTAGGGGATTCCATGTGGAGAAGAAGCAGAACTCACTTGTCTTGTGTTGGCAAAGGAAGGATCTCATCTCGGTTTCAACTTGGAGATGCTGA
Protein sequence

>MS.gene96424.t1

MKAMPLPFEEYIGKGVLDFGSSVVASSDSYLFSQQQEQFLQRWRENCCYAGIEPNSVVVFDLKKPNQQTTPTSSSTLSSSHGSAGGGASTDSTTGAKDNNTNRNIPQVEGKRCGMEDWESVLSESPSQDQDHSILKLIMEDIEDASMGLSKLLQVGTSNSHSQQDVEFNGFSFMDQQSSVLDPISSNGNFVTSIDSSSVVATTATAAEICSDFPFASRGMNQIQNPNFSSSQVSLSHGGLFHQHQQQSIGSLDEKLPHQFVMNQNQAQFIPNPSLVFPFTHSQLQENREIQLQPPAKRLNCGTNYEIPKIPFLDSGQEMFLRRQQQHQQQQHQQQLQLLPHHLQQRTMAPKQKMGNPGSGGGEDVSAHQFQQAIIDQLFKAAELIDAGNPEHAHGILARLNHQISPMGKPFQRAAFYFKEAFQLLLQSNVNNSNNNSFSPTSLLLKIGAYKSFSEISPVLQFSNFTSNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPSHHDEIELSFTNENLKQYAGEINMSFELEILTLESLNSVSWPQPLRDCEAVVVNLPICSFSNYPSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHMIFALQSYSGLLESLDAVGVNVHPDVLQMIEKYYLQPAVEKLVLGRLRSQDRTLPWKNLLLSSGFSPLTFSNFTESQAECLVQRIPGRGFHVEKKQNSLVLCWQRKDLISVSTWRC