AlfalfaGEDB | MS.gene48898

M. sativa cultivar XinJiangDaYe / MS.gene48898

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48898.t1	XP_013455102.1	91.2	628	51	3	1	627	1	625	5.40E-290	1006.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48898.t1	O81316	45.8	515	217	13	121	627	95	555	2.8e-101	370.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48898.t1	A0A072UTD0	91.2	628	51	3	1	627	1	625	3.9e-290	1006.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene48898.t1	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene20122	MS.gene48898	PPI
MS.gene48898	MS.gene010745	PPI
MS.gene48898	MS.gene010744	PPI
MS.gene82053	MS.gene48898	PPI
MS.gene82054	MS.gene48898	PPI
MS.gene96423	MS.gene48898	PPI
MS.gene96424	MS.gene48898	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48898.t1	MTR_4g026485	93.949	628	34	3	1	627	1	625	0.0	1101
MS.gene48898.t1	MTR_0092s0100	61.060	434	153	5	201	627	305	729	5.44e-169	499
MS.gene48898.t1	MTR_0092s0100	34.783	207	103	9	1	191	1	191	2.68e-12	70.5
MS.gene48898.t1	MTR_0092s0100	61.060	434	153	5	201	627	308	732	5.65e-169	499
MS.gene48898.t1	MTR_0092s0100	34.783	207	103	9	1	191	4	194	2.48e-12	70.5
MS.gene48898.t1	MTR_8g077940	34.324	370	225	10	269	627	180	542	8.88e-54	192
MS.gene48898.t1	MTR_5g094450	27.586	377	245	10	272	626	162	532	4.26e-32	131
MS.gene48898.t1	MTR_7g027190	27.465	426	258	13	232	627	270	674	7.98e-32	131
MS.gene48898.t1	MTR_4g077760	29.897	388	221	15	268	626	190	555	7.04e-31	127
MS.gene48898.t1	MTR_3g065980	26.260	377	247	8	272	626	173	540	9.10e-31	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48898.t1	AT4G00150	41.930	632	282	18	4	627	1	555	4.59e-134	404
MS.gene48898.t1	AT2G45160	39.525	673	325	23	4	627	1	640	2.48e-111	348
MS.gene48898.t1	AT3G60630	39.577	662	323	25	4	627	1	623	7.99e-110	343
MS.gene48898.t1	AT4G36710	30.913	427	259	13	219	626	76	485	4.86e-52	187
MS.gene48898.t1	AT2G04890	28.226	372	238	9	272	626	54	413	2.81e-36	141
MS.gene48898.t1	AT5G66770	29.275	386	248	13	258	626	207	584	6.18e-36	143
MS.gene48898.t1	AT2G01570	27.174	368	244	9	272	626	225	581	4.76e-31	128
MS.gene48898.t1	AT3G50650	27.649	387	239	12	264	626	173	542	3.72e-30	125
MS.gene48898.t1	AT3G54220	27.473	364	238	7	276	625	298	649	3.79e-30	126
MS.gene48898.t1	AT5G17490	27.717	368	241	10	272	626	161	516	8.70e-30	124

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Find 122 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAGCTAAGGCCGAAAG+TGG	0.562649	4.3:-72312181	MS.gene48898:CDS
AACAAAATCTTGCAAAGTGG+TGG	0.589673	4.3:-72313206	MS.gene48898:CDS
AACAGGAAAGTTCACACCAA+TGG	0.593516	4.3:+72312254	None:intergenic
AACTCATCTCAATTTCAACT+TGG	0.495720	4.3:-72311792	MS.gene48898:CDS
AAGAACATGAACGACATTGG+TGG	0.589769	4.3:+72312113	None:intergenic
AAGATGAAAATGGAGAACTA+GGG	0.633076	4.3:+72313453	None:intergenic
AAGCCGAGTGTTTGGTTCAA+AGG	0.464484	4.3:-72311882	MS.gene48898:CDS
AAGCGCAAGGGATATTGGCG+CGG	0.648472	4.3:-72312788	MS.gene48898:CDS
AAGGTGAGTTCTAGTACTAC+CGG	0.552432	4.3:-72312897	MS.gene48898:CDS
AAGTTGGCAAACTGAAGAAC+AGG	0.472756	4.3:+72312597	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTCATCTCAATTTCAACT+TGG	-	chr4.3:72313635-72313654	MS.gene48898:CDS	30.0%
AAGATGAAAATGGAGAACTA+GGG	+	chr4.3:72311977-72311996	None:intergenic	30.0%
AATAGTGAAGAAAAATGTGG+TGG	-	chr4.3:72312101-72312120	MS.gene48898:CDS	30.0%
ATCAACCTCAACAACAAAAT+TGG	-	chr4.3:72311889-72311908	MS.gene48898:CDS	30.0%
ATGTACTCCAAAAGATTGAA+AGG	-	chr4.3:72313389-72313408	MS.gene48898:CDS	30.0%
CAGTTAATGCTTCATTCAAA+CGG	-	chr4.3:72312731-72312750	MS.gene48898:CDS	30.0%
GACAATGTTGAAGATGAAAA+TGG	+	chr4.3:72311987-72312006	None:intergenic	30.0%
GAGAATAGTGAAGAAAAATG+TGG	-	chr4.3:72312098-72312117	MS.gene48898:CDS	30.0%
TTAAAAAATGAAGAGCCACA+GGG	+	chr4.3:72313228-72313247	None:intergenic	30.0%
TTACTATCAAAGAAATGACC+CGG	+	chr4.3:72313148-72313167	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	72311783	72313666	72311783	ID=MS.gene48898
chr4.3	mRNA	72311783	72313666	72311783	ID=MS.gene48898.t1;Parent=MS.gene48898
chr4.3	exon	72311783	72313666	72311783	ID=MS.gene48898.t1.exon1;Parent=MS.gene48898.t1
chr4.3	CDS	72311783	72313666	72311783	ID=cds.MS.gene48898.t1;Parent=MS.gene48898.t1

Gene Sequence

>MS.gene48898

ATGAAGGCTTTGCCCTTAACTTTTGAGGAATTTCAAGTGAAGGGAATGTTGGATAATTTCTCTTCAACTTCAAATTCAGTTTCAGATTCATTTTCATTGCTTTTGAATCAACCTCAACAACAAAATTGGTCATTAGATAAAGAAGATTATTGCTATGTGGAGCCCACTTCAGTTCTTGATTCAAGAAGAAGCCCTAGTTCTCCATTTTCATCTTCAACATTGTCATCTTCTCATGGTAGTGGTAGTAATGGTAATGGTTCAAATAGCAATACTTCAATGGTAGTTTCTGAGAACCTTGCTCATCTTTCAAATGATGAGAATAGTGAAGAAAAATGTGGTGGTGGTGGTGGTGGTATGAGAATGGATGATTGGGAAGGTCAAGATCAGTCACTTTTGAGGTTAATTATGGGAGATGTTGAAGACCCTTATGCTGGATTGAACAAAATCTTGCAAAGTGGTGGTTGTGGTTCTCAAAATGTTGATTTTCATGGTGGTTTTGGAGTTTTGGATCATCAACAACAACAATGGTTGAACATGGACGCTTCGGTTCAACAAGGGAATTACAATGTTTTTCCATTCATTCCTGAGAATTGCAACGTGTTACCGCTCTTGGATTCTGGTCAAGAAGTGTTTGCTAGGAGACATCAGCAGCAGGAAACACAGCTTCCATTGTTTCCTCATCATCATGATCTGCAGCAGCATTACCAACAACAGCAGTCGTCGGTTGTTCCAATTGCGAAGCATCAAAAGGTGAGTTCTAGTACTACCGGAGATGATGCAAGCAGCCAGCTTCAGCAGAGTATATTTGATCAGCTATTCAAAACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCAAGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCAATTGGTAAGCCTTTTCAAAGGGCTTCTTTCTACATGAAAGAAGCCTTACAGTTAATGCTTCATTCAAACGGTAACAATCTCACGGCTTTTTCGCCGATTAGTTTCATTTTCAAAATTGGAGCTTATAAGTCTTTTTCCGAGATATCACCTGTTCTTCAGTTTGCCAACTTTACTTGTAATCAAGCCCTCATTGAAGCCTTGGAGAGGTTCGATCGAATTCATGTTATTGATTTCGATATTGGGTTTGGAGTACAATGGTCGTCTTTTATGCAAGAGATTGCACTAAGAAGTAACGGCAAGCCTTCACTTAAGATTACTGCTGTTGTATCTCCCTCGTCTTGCAACGAGATTGAGCTCAATTTCACCCAAGAAAATTTGAGTCAGTATGCAGAAGACCTCAACATGTCGTTTGAGTTCAACGTTTTGAACATTGAATCGTTGAACTTGCCATCATGTCCTCTACCGGGTCATTTCTTTGATAGTAATGAAGCCATTGGTGTGAACTTTCCTGTTTCCAGTTTCATAAGTAATCCATCATGCTTCCCTGTGGCTCTTCATTTTTTAAAGCAGCTAAGGCCGAAAGTGGTCGTAACTTTGGACAAAAACTGCGACCGAATGGATGTTCCTCTTCCCACCAATGTCGTTCATGTTCTTCAATGTTACTCAGCTTTACTTGAATCACTTGATGCTGTGAACGTGAACCTCGATGTACTCCAAAAGATTGAAAGGCATTACATCCAACCAACCATCAACAAAATCATCCTCGGTCACCACAACCAGCGTGACAAATTACCTCCATGGAGGAACATGTTTCTTCAGTCCGGTTTCTCTCCCTTCACATTCAGCAACTTCACGGAAGCTCAAGCCGAGTGTTTGGTTCAAAGGGCACCTGTGAGAGGATTTCAAGTGGAAAGAAAGCCTTCCACTCTTGTGCTATGCTGGCAGAGGAAAGAACTCATCTCAATTTCAACTTGGAGATGTTGA

Protein sequence

>MS.gene48898.t1

MKALPLTFEEFQVKGMLDNFSSTSNSVSDSFSLLLNQPQQQNWSLDKEDYCYVEPTSVLDSRRSPSSPFSSSTLSSSHGSGSNGNGSNSNTSMVVSENLAHLSNDENSEEKCGGGGGGMRMDDWEGQDQSLLRLIMGDVEDPYAGLNKILQSGGCGSQNVDFHGGFGVLDHQQQQWLNMDASVQQGNYNVFPFIPENCNVLPLLDSGQEVFARRHQQQETQLPLFPHHHDLQQHYQQQQSSVVPIAKHQKVSSSTTGDDASSQLQQSIFDQLFKTAELIEAGNPVQAQGILARLNHQLSPIGKPFQRASFYMKEALQLMLHSNGNNLTAFSPISFIFKIGAYKSFSEISPVLQFANFTCNQALIEALERFDRIHVIDFDIGFGVQWSSFMQEIALRSNGKPSLKITAVVSPSSCNEIELNFTQENLSQYAEDLNMSFEFNVLNIESLNLPSCPLPGHFFDSNEAIGVNFPVSSFISNPSCFPVALHFLKQLRPKVVVTLDKNCDRMDVPLPTNVVHVLQCYSALLESLDAVNVNLDVLQKIERHYIQPTINKIILGHHNQRDKLPPWRNMFLQSGFSPFTFSNFTEAQAECLVQRAPVRGFQVERKPSTLVLCWQRKELISISTWRC