Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48898.t1 | XP_013455102.1 | 91.2 | 628 | 51 | 3 | 1 | 627 | 1 | 625 | 5.40E-290 | 1006.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48898.t1 | O81316 | 45.8 | 515 | 217 | 13 | 121 | 627 | 95 | 555 | 2.8e-101 | 370.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48898.t1 | A0A072UTD0 | 91.2 | 628 | 51 | 3 | 1 | 627 | 1 | 625 | 3.9e-290 | 1006.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene48898.t1 | TF | GRAS |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene96423 | MS.gene48898 | PPI |
MS.gene20122 | MS.gene48898 | PPI |
MS.gene82054 | MS.gene48898 | PPI |
MS.gene48898 | MS.gene010745 | PPI |
MS.gene96424 | MS.gene48898 | PPI |
MS.gene82053 | MS.gene48898 | PPI |
MS.gene48898 | MS.gene010744 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48898.t1 | MTR_4g026485 | 93.949 | 628 | 34 | 3 | 1 | 627 | 1 | 625 | 0.0 | 1101 |
MS.gene48898.t1 | MTR_0092s0100 | 61.060 | 434 | 153 | 5 | 201 | 627 | 305 | 729 | 5.44e-169 | 499 |
MS.gene48898.t1 | MTR_0092s0100 | 34.783 | 207 | 103 | 9 | 1 | 191 | 1 | 191 | 2.68e-12 | 70.5 |
MS.gene48898.t1 | MTR_0092s0100 | 61.060 | 434 | 153 | 5 | 201 | 627 | 308 | 732 | 5.65e-169 | 499 |
MS.gene48898.t1 | MTR_0092s0100 | 34.783 | 207 | 103 | 9 | 1 | 191 | 4 | 194 | 2.48e-12 | 70.5 |
MS.gene48898.t1 | MTR_8g077940 | 34.324 | 370 | 225 | 10 | 269 | 627 | 180 | 542 | 8.88e-54 | 192 |
MS.gene48898.t1 | MTR_5g094450 | 27.586 | 377 | 245 | 10 | 272 | 626 | 162 | 532 | 4.26e-32 | 131 |
MS.gene48898.t1 | MTR_7g027190 | 27.465 | 426 | 258 | 13 | 232 | 627 | 270 | 674 | 7.98e-32 | 131 |
MS.gene48898.t1 | MTR_4g077760 | 29.897 | 388 | 221 | 15 | 268 | 626 | 190 | 555 | 7.04e-31 | 127 |
MS.gene48898.t1 | MTR_3g065980 | 26.260 | 377 | 247 | 8 | 272 | 626 | 173 | 540 | 9.10e-31 | 127 |
MS.gene48898.t1 | MTR_3g056110 | 24.664 | 446 | 278 | 14 | 224 | 626 | 112 | 542 | 2.10e-30 | 126 |
MS.gene48898.t1 | MTR_5g097480 | 25.405 | 370 | 258 | 8 | 272 | 626 | 178 | 544 | 7.34e-30 | 124 |
MS.gene48898.t1 | MTR_7g074650 | 27.100 | 369 | 232 | 8 | 276 | 626 | 443 | 792 | 1.23e-28 | 122 |
MS.gene48898.t1 | MTR_4g076020 | 27.174 | 368 | 228 | 10 | 274 | 626 | 87 | 429 | 3.58e-28 | 118 |
MS.gene48898.t1 | MTR_2g026250 | 25.594 | 379 | 253 | 11 | 270 | 627 | 227 | 597 | 5.43e-27 | 116 |
MS.gene48898.t1 | MTR_4g102790 | 25.789 | 380 | 245 | 11 | 272 | 625 | 293 | 661 | 8.25e-26 | 113 |
MS.gene48898.t1 | MTR_2g082090 | 25.568 | 352 | 218 | 10 | 302 | 625 | 243 | 578 | 1.34e-25 | 112 |
MS.gene48898.t1 | MTR_1g029420 | 27.513 | 378 | 240 | 12 | 272 | 626 | 226 | 592 | 1.75e-25 | 111 |
MS.gene48898.t1 | MTR_3g089055 | 26.075 | 372 | 253 | 8 | 272 | 626 | 199 | 565 | 4.43e-25 | 110 |
MS.gene48898.t1 | MTR_3g089055 | 26.075 | 372 | 253 | 8 | 272 | 626 | 204 | 570 | 5.69e-25 | 109 |
MS.gene48898.t1 | MTR_4g133660 | 25.330 | 379 | 250 | 10 | 272 | 627 | 176 | 544 | 1.26e-24 | 108 |
MS.gene48898.t1 | MTR_1g069725 | 26.344 | 372 | 241 | 11 | 272 | 627 | 110 | 464 | 2.63e-24 | 107 |
MS.gene48898.t1 | MTR_5g058860 | 25.490 | 408 | 263 | 15 | 252 | 627 | 100 | 498 | 4.78e-22 | 100 |
MS.gene48898.t1 | MTR_3g072710 | 28.239 | 301 | 199 | 10 | 339 | 627 | 206 | 501 | 1.67e-21 | 98.6 |
MS.gene48898.t1 | MTR_7g109580 | 23.776 | 429 | 291 | 10 | 230 | 626 | 130 | 554 | 3.67e-21 | 98.2 |
MS.gene48898.t1 | MTR_5g019750 | 28.205 | 234 | 150 | 8 | 403 | 627 | 71 | 295 | 1.21e-20 | 93.2 |
MS.gene48898.t1 | MTR_4g104020 | 24.433 | 397 | 262 | 13 | 258 | 627 | 136 | 521 | 1.22e-20 | 96.3 |
MS.gene48898.t1 | MTR_8g093070 | 26.963 | 382 | 239 | 16 | 265 | 625 | 133 | 495 | 1.61e-19 | 92.4 |
MS.gene48898.t1 | MTR_4g097080 | 22.812 | 377 | 262 | 13 | 272 | 626 | 134 | 503 | 6.47e-19 | 90.9 |
MS.gene48898.t1 | MTR_2g034260 | 24.289 | 387 | 258 | 11 | 267 | 626 | 206 | 584 | 1.10e-18 | 90.5 |
MS.gene48898.t1 | MTR_7g062120 | 22.750 | 400 | 279 | 10 | 250 | 626 | 348 | 740 | 1.82e-18 | 90.1 |
MS.gene48898.t1 | MTR_2g097473 | 21.792 | 413 | 292 | 10 | 234 | 625 | 251 | 653 | 1.89e-18 | 89.7 |
MS.gene48898.t1 | MTR_2g034280 | 25.197 | 381 | 260 | 12 | 267 | 626 | 199 | 575 | 3.22e-18 | 89.0 |
MS.gene48898.t1 | MTR_2g097410 | 24.458 | 323 | 215 | 8 | 276 | 576 | 376 | 691 | 3.93e-17 | 85.9 |
MS.gene48898.t1 | MTR_2g034250 | 24.740 | 384 | 261 | 12 | 267 | 626 | 206 | 585 | 5.82e-17 | 85.1 |
MS.gene48898.t1 | MTR_2g097390 | 24.267 | 375 | 253 | 12 | 272 | 625 | 276 | 640 | 6.57e-17 | 85.1 |
MS.gene48898.t1 | MTR_2g097310 | 25.091 | 275 | 184 | 7 | 272 | 533 | 273 | 538 | 1.25e-16 | 84.0 |
MS.gene48898.t1 | MTR_2g097380 | 24.706 | 255 | 166 | 6 | 287 | 533 | 240 | 476 | 5.05e-16 | 82.0 |
MS.gene48898.t1 | MTR_2g097467 | 21.883 | 393 | 275 | 10 | 252 | 625 | 274 | 653 | 9.49e-16 | 81.3 |
MS.gene48898.t1 | MTR_8g442410 | 22.193 | 383 | 257 | 9 | 272 | 626 | 156 | 525 | 3.48e-15 | 79.3 |
MS.gene48898.t1 | MTR_2g097350 | 23.670 | 376 | 254 | 13 | 272 | 625 | 275 | 639 | 4.01e-15 | 79.3 |
MS.gene48898.t1 | MTR_2g089100 | 23.325 | 403 | 247 | 14 | 272 | 625 | 53 | 442 | 1.73e-14 | 76.6 |
MS.gene48898.t1 | MTR_4g064200 | 21.237 | 372 | 268 | 8 | 272 | 625 | 285 | 649 | 2.20e-14 | 77.0 |
MS.gene48898.t1 | MTR_5g015490 | 20.888 | 383 | 268 | 9 | 272 | 626 | 115 | 490 | 2.58e-14 | 76.3 |
MS.gene48898.t1 | MTR_1g086970 | 24.126 | 286 | 197 | 9 | 351 | 626 | 203 | 478 | 3.19e-14 | 75.9 |
MS.gene48898.t1 | MTR_2g097463 | 21.292 | 418 | 293 | 13 | 231 | 625 | 250 | 654 | 4.63e-14 | 75.9 |
MS.gene48898.t1 | MTR_4g064150 | 25.899 | 278 | 182 | 7 | 272 | 531 | 362 | 633 | 1.04e-13 | 74.7 |
MS.gene48898.t1 | MTR_2g099110 | 21.823 | 417 | 278 | 11 | 248 | 626 | 45 | 451 | 1.81e-13 | 73.6 |
MS.gene48898.t1 | MTR_4g064120 | 24.910 | 277 | 186 | 7 | 272 | 531 | 255 | 526 | 4.48e-13 | 72.8 |
MS.gene48898.t1 | MTR_0092s0060 | 35.106 | 188 | 93 | 8 | 1 | 172 | 1 | 175 | 6.61e-13 | 68.2 |
MS.gene48898.t1 | MTR_4g064180 | 25.090 | 279 | 183 | 8 | 272 | 531 | 255 | 526 | 8.23e-13 | 72.0 |
MS.gene48898.t1 | MTR_4g064160 | 19.407 | 371 | 270 | 10 | 276 | 625 | 321 | 683 | 8.49e-12 | 68.6 |
MS.gene48898.t1 | MTR_5g009080 | 28.324 | 173 | 116 | 3 | 272 | 440 | 57 | 225 | 1.08e-11 | 67.8 |
MS.gene48898.t1 | MTR_4g076140 | 31.892 | 185 | 112 | 4 | 272 | 448 | 49 | 227 | 1.60e-11 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48898.t1 | AT4G00150 | 41.930 | 632 | 282 | 18 | 4 | 627 | 1 | 555 | 4.59e-134 | 404 |
MS.gene48898.t1 | AT2G45160 | 39.525 | 673 | 325 | 23 | 4 | 627 | 1 | 640 | 2.48e-111 | 348 |
MS.gene48898.t1 | AT3G60630 | 39.577 | 662 | 323 | 25 | 4 | 627 | 1 | 623 | 7.99e-110 | 343 |
MS.gene48898.t1 | AT4G36710 | 30.913 | 427 | 259 | 13 | 219 | 626 | 76 | 485 | 4.86e-52 | 187 |
MS.gene48898.t1 | AT2G04890 | 28.226 | 372 | 238 | 9 | 272 | 626 | 54 | 413 | 2.81e-36 | 141 |
MS.gene48898.t1 | AT5G66770 | 29.275 | 386 | 248 | 13 | 258 | 626 | 207 | 584 | 6.18e-36 | 143 |
MS.gene48898.t1 | AT2G01570 | 27.174 | 368 | 244 | 9 | 272 | 626 | 225 | 581 | 4.76e-31 | 128 |
MS.gene48898.t1 | AT3G50650 | 27.649 | 387 | 239 | 12 | 264 | 626 | 173 | 542 | 3.72e-30 | 125 |
MS.gene48898.t1 | AT3G54220 | 27.473 | 364 | 238 | 7 | 276 | 625 | 298 | 649 | 3.79e-30 | 126 |
MS.gene48898.t1 | AT5G17490 | 27.717 | 368 | 241 | 10 | 272 | 626 | 161 | 516 | 8.70e-30 | 124 |
MS.gene48898.t1 | AT3G03450 | 25.410 | 366 | 258 | 6 | 272 | 626 | 184 | 545 | 1.25e-29 | 124 |
MS.gene48898.t1 | AT4G17230 | 27.297 | 381 | 251 | 10 | 265 | 626 | 152 | 525 | 1.85e-29 | 123 |
MS.gene48898.t1 | AT4G17230 | 27.297 | 381 | 251 | 10 | 265 | 626 | 152 | 525 | 1.85e-29 | 123 |
MS.gene48898.t1 | AT5G48150 | 24.138 | 377 | 269 | 8 | 265 | 626 | 116 | 490 | 4.76e-29 | 121 |
MS.gene48898.t1 | AT5G48150 | 24.138 | 377 | 269 | 8 | 265 | 626 | 116 | 490 | 4.76e-29 | 121 |
MS.gene48898.t1 | AT5G48150 | 24.138 | 377 | 269 | 8 | 265 | 626 | 116 | 490 | 4.76e-29 | 121 |
MS.gene48898.t1 | AT5G48150 | 24.138 | 377 | 269 | 8 | 265 | 626 | 116 | 490 | 4.76e-29 | 121 |
MS.gene48898.t1 | AT1G14920 | 25.824 | 364 | 254 | 8 | 272 | 626 | 173 | 529 | 6.94e-29 | 121 |
MS.gene48898.t1 | AT1G50600 | 24.105 | 419 | 261 | 11 | 238 | 626 | 135 | 526 | 2.03e-28 | 120 |
MS.gene48898.t1 | AT1G66350 | 25.272 | 368 | 247 | 10 | 272 | 627 | 156 | 507 | 2.12e-28 | 119 |
MS.gene48898.t1 | AT1G50600 | 24.105 | 419 | 261 | 11 | 238 | 626 | 206 | 597 | 8.29e-28 | 119 |
MS.gene48898.t1 | AT1G50600 | 24.029 | 412 | 270 | 10 | 238 | 626 | 210 | 601 | 8.78e-28 | 119 |
MS.gene48898.t1 | AT1G21450 | 25.135 | 370 | 260 | 7 | 272 | 626 | 226 | 593 | 1.28e-27 | 118 |
MS.gene48898.t1 | AT5G41920 | 25.064 | 391 | 255 | 10 | 255 | 626 | 29 | 400 | 6.52e-27 | 114 |
MS.gene48898.t1 | AT1G63100 | 26.371 | 383 | 236 | 13 | 277 | 625 | 258 | 628 | 6.38e-23 | 103 |
MS.gene48898.t1 | AT1G63100 | 26.371 | 383 | 236 | 13 | 277 | 625 | 283 | 653 | 6.58e-23 | 103 |
MS.gene48898.t1 | AT5G59450 | 22.252 | 373 | 270 | 7 | 272 | 626 | 228 | 598 | 4.53e-19 | 91.7 |
MS.gene48898.t1 | AT1G55580 | 24.262 | 305 | 216 | 6 | 337 | 626 | 141 | 445 | 9.01e-19 | 89.7 |
MS.gene48898.t1 | AT4G08250 | 23.907 | 389 | 259 | 13 | 251 | 625 | 111 | 476 | 9.28e-19 | 90.1 |
MS.gene48898.t1 | AT4G37650 | 20.312 | 384 | 276 | 8 | 272 | 626 | 147 | 529 | 3.57e-16 | 82.4 |
MS.gene48898.t1 | AT3G46600 | 21.198 | 434 | 312 | 10 | 218 | 626 | 151 | 579 | 9.95e-16 | 81.3 |
MS.gene48898.t1 | AT3G46600 | 21.198 | 434 | 312 | 10 | 218 | 626 | 119 | 547 | 3.02e-15 | 79.3 |
MS.gene48898.t1 | AT1G07530 | 20.000 | 390 | 298 | 8 | 250 | 625 | 375 | 764 | 3.27e-15 | 79.7 |
MS.gene48898.t1 | AT3G46600 | 22.102 | 371 | 269 | 8 | 272 | 626 | 5 | 371 | 3.92e-15 | 78.2 |
MS.gene48898.t1 | AT1G07520 | 25.743 | 202 | 139 | 5 | 276 | 468 | 324 | 523 | 8.54e-14 | 75.1 |
MS.gene48898.t1 | AT1G07520 | 25.743 | 202 | 139 | 5 | 276 | 468 | 323 | 522 | 8.83e-14 | 75.1 |
MS.gene48898.t1 | AT1G07520 | 25.743 | 202 | 139 | 5 | 276 | 468 | 159 | 358 | 9.62e-14 | 74.7 |
MS.gene48898.t1 | AT1G07520 | 25.743 | 202 | 139 | 5 | 276 | 468 | 159 | 358 | 9.62e-14 | 74.7 |
MS.gene48898.t1 | AT1G50420 | 29.534 | 193 | 119 | 4 | 272 | 451 | 58 | 246 | 6.41e-13 | 72.0 |
MS.gene48898.t1 | AT2G29065 | 21.658 | 374 | 266 | 10 | 276 | 625 | 257 | 627 | 1.26e-11 | 68.2 |
Find 122 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTAATGCCTTTCAATCTTT+TGG | 0.183368 | 4.3:+72312031 | None:intergenic |
CATGTTATTGATTTCGATAT+TGG | 0.238642 | 4.3:-72312525 | MS.gene48898:CDS |
GTGTTACCGCTCTTGGATTC+TGG | 0.286999 | 4.3:-72313047 | MS.gene48898:CDS |
TTGAAATTCCTCAAAAGTTA+AGG | 0.300516 | 4.3:+72313631 | None:intergenic |
ATGTTATTGATTTCGATATT+GGG | 0.325426 | 4.3:-72312524 | MS.gene48898:CDS |
GACAATGTTGAAGATGAAAA+TGG | 0.331833 | 4.3:+72313443 | None:intergenic |
TCCAAAGTTACGACCACTTT+CGG | 0.339309 | 4.3:+72312168 | None:intergenic |
ATCAACCTCAACAACAAAAT+TGG | 0.340640 | 4.3:-72313538 | MS.gene48898:CDS |
TGATGGATTACTTATGAAAC+TGG | 0.357205 | 4.3:+72312230 | None:intergenic |
ATTGATTTCGATATTGGGTT+TGG | 0.358381 | 4.3:-72312519 | MS.gene48898:CDS |
TTGCAACGTGTTACCGCTCT+TGG | 0.360726 | 4.3:-72313054 | MS.gene48898:CDS |
TGAAATTCCTCAAAAGTTAA+GGG | 0.383228 | 4.3:+72313632 | None:intergenic |
GGTTCAAGCGCAAGGGATAT+TGG | 0.384808 | 4.3:-72312793 | MS.gene48898:CDS |
CTTCCACTCTTGTGCTATGC+TGG | 0.398096 | 4.3:-72311825 | MS.gene48898:CDS |
TGAATGAAGCATTAACTGTA+AGG | 0.398966 | 4.3:+72312701 | None:intergenic |
GGAAGCTCAAGCCGAGTGTT+TGG | 0.423122 | 4.3:-72311890 | MS.gene48898:CDS |
GTGGTATGAGAATGGATGAT+TGG | 0.425628 | 4.3:-72313295 | MS.gene48898:CDS |
ATTTCAAGTGAAGGGAATGT+TGG | 0.436223 | 4.3:-72313615 | MS.gene48898:CDS |
TTACTTATGAAACTGGAAAC+AGG | 0.436478 | 4.3:+72312237 | None:intergenic |
AATATCCCTTGCGCTTGAAC+CGG | 0.438162 | 4.3:+72312795 | None:intergenic |
GCCGAAAGTGGTCGTAACTT+TGG | 0.444136 | 4.3:-72312169 | MS.gene48898:CDS |
CTTCACATTCAGCAACTTCA+CGG | 0.445110 | 4.3:-72311911 | MS.gene48898:CDS |
CTTTGAAAAGGCTTACCAAT+TGG | 0.446191 | 4.3:+72312747 | None:intergenic |
TCAAGCCCTCATTGAAGCCT+TGG | 0.450274 | 4.3:-72312565 | MS.gene48898:CDS |
TGGTGGTGGTGGTATGAGAA+TGG | 0.455369 | 4.3:-72313303 | MS.gene48898:CDS |
GAATGTGAAGGGAGAGAAAC+CGG | 0.460030 | 4.3:+72311924 | None:intergenic |
AAGCCGAGTGTTTGGTTCAA+AGG | 0.464484 | 4.3:-72311882 | MS.gene48898:CDS |
CAAATATACTCTGCTGAAGC+TGG | 0.467740 | 4.3:+72312859 | None:intergenic |
TAGAAAGAAGCCCTTTGAAA+AGG | 0.471306 | 4.3:+72312735 | None:intergenic |
AAGTTGGCAAACTGAAGAAC+AGG | 0.472756 | 4.3:+72312597 | None:intergenic |
AGCCGAGTGTTTGGTTCAAA+GGG | 0.474056 | 4.3:-72311881 | MS.gene48898:CDS |
GAAGATGAAAATGGAGAACT+AGG | 0.474745 | 4.3:+72313452 | None:intergenic |
ATGGTTGAACATGGACGCTT+CGG | 0.477095 | 4.3:-72313120 | MS.gene48898:CDS |
AATCACCAGCTCTCACCAAT+TGG | 0.485962 | 4.3:-72312762 | MS.gene48898:CDS |
CTTGCCATCATGTCCTCTAC+CGG | 0.490539 | 4.3:-72312301 | MS.gene48898:CDS |
GGCTTGATTACAAGTAAAGT+TGG | 0.491191 | 4.3:+72312581 | None:intergenic |
GGTAACACGTTGCAATTCTC+AGG | 0.491860 | 4.3:+72313062 | None:intergenic |
CAGTTAATGCTTCATTCAAA+CGG | 0.491869 | 4.3:-72312696 | MS.gene48898:CDS |
TTGCAATTCTCAGGAATGAA+TGG | 0.494115 | 4.3:+72313071 | None:intergenic |
AACTCATCTCAATTTCAACT+TGG | 0.495720 | 4.3:-72311792 | MS.gene48898:CDS |
TTTGAGGAATTTCAAGTGAA+GGG | 0.497110 | 4.3:-72313623 | MS.gene48898:CDS |
GCTGATAGAAGCTGGTAATC+CGG | 0.498189 | 4.3:-72312814 | MS.gene48898:CDS |
AGGAACATGTTTCTTCAGTC+CGG | 0.498389 | 4.3:-72311943 | MS.gene48898:CDS |
TTCAAATAGCAATACTTCAA+TGG | 0.504902 | 4.3:-72313387 | MS.gene48898:CDS |
TTTGATAGTAATGAAGCCAT+TGG | 0.505073 | 4.3:-72312270 | MS.gene48898:CDS |
TCCAATTGCGAAGCATCAAA+AGG | 0.505943 | 4.3:-72312916 | MS.gene48898:CDS |
GTAATTTGTCACGCTGGTTG+TGG | 0.506339 | 4.3:+72311974 | None:intergenic |
CTGAAGAACAGGTGATATCT+CGG | 0.507582 | 4.3:+72312608 | None:intergenic |
GATGTTGAAGACCCTTATGC+TGG | 0.508840 | 4.3:-72313233 | MS.gene48898:CDS |
TCTTGAATCAAGAACTGAAG+TGG | 0.511894 | 4.3:+72313481 | None:intergenic |
CAACCGACGACTGCTGTTGT+TGG | 0.513401 | 4.3:+72312940 | None:intergenic |
TCCACTTGAAATCCTCTCAC+AGG | 0.520356 | 4.3:+72311856 | None:intergenic |
CTGGTCAAGAAGTGTTTGCT+AGG | 0.526401 | 4.3:-72313028 | MS.gene48898:CDS |
CTCAATCTCGTTGCAAGACG+AGG | 0.528947 | 4.3:+72312413 | None:intergenic |
CTGGCTGCTTGCATCATCTC+CGG | 0.535895 | 4.3:+72312878 | None:intergenic |
TGAACGACATTGGTGGGAAG+AGG | 0.544276 | 4.3:+72312120 | None:intergenic |
TTGTCATCTTCTCATGGTAG+TGG | 0.544818 | 4.3:-72313425 | MS.gene48898:CDS |
TGGTATGAGAATGGATGATT+GGG | 0.551007 | 4.3:-72313294 | MS.gene48898:CDS |
ATCTTGCAAAGTGGTGGTTG+TGG | 0.551252 | 4.3:-72313200 | MS.gene48898:CDS |
TGCTAGGAGACATCAGCAGC+AGG | 0.551740 | 4.3:-72313012 | MS.gene48898:CDS |
GGTAATCCGGTTCAAGCGCA+AGG | 0.552039 | 4.3:-72312801 | MS.gene48898:CDS |
AAGGTGAGTTCTAGTACTAC+CGG | 0.552432 | 4.3:-72312897 | MS.gene48898:CDS |
TCAACATTGTCATCTTCTCA+TGG | 0.552805 | 4.3:-72313431 | MS.gene48898:CDS |
GGTAGTGGTAGTAATGGTAA+TGG | 0.556024 | 4.3:-72313410 | MS.gene48898:CDS |
GCTTACCAATTGGTGAGAGC+TGG | 0.557459 | 4.3:+72312757 | None:intergenic |
CTCTTGTGCTATGCTGGCAG+AGG | 0.560950 | 4.3:-72311819 | MS.gene48898:CDS |
ACTGCTGAGCTGATAGAAGC+TGG | 0.561856 | 4.3:-72312822 | MS.gene48898:CDS |
AAAGCAGCTAAGGCCGAAAG+TGG | 0.562649 | 4.3:-72312181 | MS.gene48898:CDS |
CCTCTCCAAGGCTTCAATGA+GGG | 0.564144 | 4.3:+72312560 | None:intergenic |
ATGTACTCCAAAAGATTGAA+AGG | 0.570089 | 4.3:-72312038 | MS.gene48898:CDS |
GTTCAAAGGGCACCTGTGAG+AGG | 0.570717 | 4.3:-72311868 | MS.gene48898:CDS |
AGAGCCACAGGGAAGCATGA+TGG | 0.571215 | 4.3:+72312213 | None:intergenic |
CATCATTTGAAAGATGAGCA+AGG | 0.573001 | 4.3:+72313351 | None:intergenic |
TCATGATGATGAGGAAACAA+TGG | 0.573020 | 4.3:+72312978 | None:intergenic |
TCTCATGGTAGTGGTAGTAA+TGG | 0.576556 | 4.3:-72313416 | MS.gene48898:CDS |
ACCATCAACAAAATCATCCT+CGG | 0.579390 | 4.3:-72312000 | MS.gene48898:CDS |
TGAAGAAACATGTTCCTCCA+TGG | 0.581165 | 4.3:+72311949 | None:intergenic |
CAGCATAGCACAAGAGTGGA+AGG | 0.583062 | 4.3:+72311826 | None:intergenic |
TCAAAGAAATGACCCGGTAG+AGG | 0.583745 | 4.3:+72312288 | None:intergenic |
AGAACATGAACGACATTGGT+GGG | 0.584347 | 4.3:+72312114 | None:intergenic |
CTTGAATCAAGAACTGAAGT+GGG | 0.584678 | 4.3:+72313482 | None:intergenic |
TGGATCATCAACAACAACAA+TGG | 0.586807 | 4.3:-72313139 | MS.gene48898:CDS |
AACAAAATCTTGCAAAGTGG+TGG | 0.589673 | 4.3:-72313206 | MS.gene48898:CDS |
AAGAACATGAACGACATTGG+TGG | 0.589769 | 4.3:+72312113 | None:intergenic |
TGGGAAGAGGAACATCCATT+CGG | 0.591209 | 4.3:+72312133 | None:intergenic |
TTCAAACGGTAACAATCTCA+CGG | 0.592949 | 4.3:-72312682 | MS.gene48898:CDS |
AACAGGAAAGTTCACACCAA+TGG | 0.593516 | 4.3:+72312254 | None:intergenic |
CCCTCATTGAAGCCTTGGAG+AGG | 0.594395 | 4.3:-72312560 | MS.gene48898:CDS |
TTGAAGAACATGAACGACAT+TGG | 0.594485 | 4.3:+72312110 | None:intergenic |
AGCGTGACAAATTACCTCCA+TGG | 0.597025 | 4.3:-72311966 | MS.gene48898:CDS |
GAGATTGCACTAAGAAGTAA+CGG | 0.600213 | 4.3:-72312471 | MS.gene48898:CDS |
CGTGAAGTTGCTGAATGTGA+AGG | 0.606027 | 4.3:+72311912 | None:intergenic |
ACCTCTCCAAGGCTTCAATG+AGG | 0.608874 | 4.3:+72312559 | None:intergenic |
CTGCCAGCATAGCACAAGAG+TGG | 0.610500 | 4.3:+72311822 | None:intergenic |
TAAAGAAGATTATTGCTATG+TGG | 0.612360 | 4.3:-72313507 | MS.gene48898:CDS |
ACAACAACAATGGTTGAACA+TGG | 0.613222 | 4.3:-72313129 | MS.gene48898:CDS |
TTGCCATCATGTCCTCTACC+GGG | 0.614713 | 4.3:-72312300 | MS.gene48898:CDS |
TGACCCGGTAGAGGACATGA+TGG | 0.615427 | 4.3:+72312297 | None:intergenic |
AATTCGATCGAACCTCTCCA+AGG | 0.628009 | 4.3:+72312548 | None:intergenic |
ATGGAGGTAATTTGTCACGC+TGG | 0.629161 | 4.3:+72311968 | None:intergenic |
AAGATGAAAATGGAGAACTA+GGG | 0.633076 | 4.3:+72313453 | None:intergenic |
ACAGCAGTAATCTTAAGTGA+AGG | 0.636223 | 4.3:+72312444 | None:intergenic |
GTAATCCGGTTCAAGCGCAA+GGG | 0.638818 | 4.3:-72312800 | MS.gene48898:CDS |
TCAATCTCGTTGCAAGACGA+GGG | 0.646604 | 4.3:+72312414 | None:intergenic |
AAGCGCAAGGGATATTGGCG+CGG | 0.648472 | 4.3:-72312788 | MS.gene48898:CDS |
TGCCCTTTGAACCAAACACT+CGG | 0.651926 | 4.3:+72311879 | None:intergenic |
TGAACTCAAACGACATGTTG+AGG | 0.652289 | 4.3:+72312349 | None:intergenic |
ACCTGTGAGAGGATTTCAAG+TGG | 0.654432 | 4.3:-72311857 | MS.gene48898:CDS |
ATATTGGGTTTGGAGTACAA+TGG | 0.656630 | 4.3:-72312509 | MS.gene48898:CDS |
TGCTGCAGATCATGATGATG+AGG | 0.657062 | 4.3:+72312969 | None:intergenic |
GTGAAGTTGCTGAATGTGAA+GGG | 0.658589 | 4.3:+72311913 | None:intergenic |
ATGGACGCTTCGGTTCAACA+AGG | 0.660128 | 4.3:-72313110 | MS.gene48898:CDS |
TTACTATCAAAGAAATGACC+CGG | 0.669847 | 4.3:+72312282 | None:intergenic |
CACGCTGGTTGTGGTGACCG+AGG | 0.670125 | 4.3:+72311983 | None:intergenic |
TGGACGCTTCGGTTCAACAA+GGG | 0.687015 | 4.3:-72313109 | MS.gene48898:CDS |
TTACCAACAACAGCAGTCGT+CGG | 0.697756 | 4.3:-72312943 | MS.gene48898:CDS |
AGAAACATGTTCCTCCATGG+AGG | 0.701239 | 4.3:+72311952 | None:intergenic |
TAATCCATCATGCTTCCCTG+TGG | 0.706732 | 4.3:-72312217 | MS.gene48898:CDS |
ATGAGAATGGATGATTGGGA+AGG | 0.712507 | 4.3:-72313290 | MS.gene48898:CDS |
TTGAACAAAATCTTGCAAAG+TGG | 0.719051 | 4.3:-72313209 | MS.gene48898:CDS |
TCTTGACCAGAATCCAAGAG+CGG | 0.742204 | 4.3:+72313041 | None:intergenic |
GTGACAAATTACCTCCATGG+AGG | 0.762900 | 4.3:-72311963 | MS.gene48898:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTAGTTTCATTTTCAAAAT+TGG | - | chr4.3:72312779-72312798 | MS.gene48898:CDS | 15.0% |
!!! | ATTTTGAAAATGAAACTAAT+CGG | + | chr4.3:72312779-72312798 | None:intergenic | 15.0% |
!!! | ATGTTATTGATTTCGATATT+GGG | - | chr4.3:72312903-72312922 | MS.gene48898:CDS | 20.0% |
! | TAAAGAAGATTATTGCTATG+TGG | - | chr4.3:72311920-72311939 | MS.gene48898:CDS | 25.0% |
! | TGAAATTCCTCAAAAGTTAA+GGG | + | chr4.3:72311798-72311817 | None:intergenic | 25.0% |
! | TTCAAATAGCAATACTTCAA+TGG | - | chr4.3:72312040-72312059 | MS.gene48898:CDS | 25.0% |
! | TTGAAATTCCTCAAAAGTTA+AGG | + | chr4.3:72311799-72311818 | None:intergenic | 25.0% |
!!! | ATACTGACTCAAATTTTCTT+GGG | + | chr4.3:72313050-72313069 | None:intergenic | 25.0% |
!!! | CATGTTATTGATTTCGATAT+TGG | - | chr4.3:72312902-72312921 | MS.gene48898:CDS | 25.0% |
!!! | TCACTTTTGAGGTTAATTAT+GGG | - | chr4.3:72312170-72312189 | MS.gene48898:CDS | 25.0% |
!!! | TCTCAAAATGTTGATTTTCA+TGG | - | chr4.3:72312251-72312270 | MS.gene48898:CDS | 25.0% |
!!! | TTCATTTTTTAAAGCAGCTA+AGG | - | chr4.3:72313236-72313255 | MS.gene48898:CDS | 25.0% |
AACTCATCTCAATTTCAACT+TGG | - | chr4.3:72313635-72313654 | MS.gene48898:CDS | 30.0% | |
AAGATGAAAATGGAGAACTA+GGG | + | chr4.3:72311977-72311996 | None:intergenic | 30.0% | |
AATAGTGAAGAAAAATGTGG+TGG | - | chr4.3:72312101-72312120 | MS.gene48898:CDS | 30.0% | |
ATCAACCTCAACAACAAAAT+TGG | - | chr4.3:72311889-72311908 | MS.gene48898:CDS | 30.0% | |
ATGTACTCCAAAAGATTGAA+AGG | - | chr4.3:72313389-72313408 | MS.gene48898:CDS | 30.0% | |
CAGTTAATGCTTCATTCAAA+CGG | - | chr4.3:72312731-72312750 | MS.gene48898:CDS | 30.0% | |
GACAATGTTGAAGATGAAAA+TGG | + | chr4.3:72311987-72312006 | None:intergenic | 30.0% | |
GAGAATAGTGAAGAAAAATG+TGG | - | chr4.3:72312098-72312117 | MS.gene48898:CDS | 30.0% | |
TTAAAAAATGAAGAGCCACA+GGG | + | chr4.3:72313228-72313247 | None:intergenic | 30.0% | |
TTACTATCAAAGAAATGACC+CGG | + | chr4.3:72313148-72313167 | None:intergenic | 30.0% | |
TTACTTATGAAACTGGAAAC+AGG | + | chr4.3:72313193-72313212 | None:intergenic | 30.0% | |
TTGAACAAAATCTTGCAAAG+TGG | - | chr4.3:72312218-72312237 | MS.gene48898:CDS | 30.0% | |
TTTAAAAAATGAAGAGCCAC+AGG | + | chr4.3:72313229-72313248 | None:intergenic | 30.0% | |
! | AATTGGTAAGCCTTTTCAAA+GGG | - | chr4.3:72312682-72312701 | MS.gene48898:CDS | 30.0% |
! | ATTGATTTCGATATTGGGTT+TGG | - | chr4.3:72312908-72312927 | MS.gene48898:CDS | 30.0% |
! | ATTTTGTTCAATCCAGCATA+AGG | + | chr4.3:72312209-72312228 | None:intergenic | 30.0% |
! | TGAATGAAGCATTAACTGTA+AGG | + | chr4.3:72312729-72312748 | None:intergenic | 30.0% |
! | TGTAATGCCTTTCAATCTTT+TGG | + | chr4.3:72313399-72313418 | None:intergenic | 30.0% |
! | TTTGAGGAATTTCAAGTGAA+GGG | - | chr4.3:72311804-72311823 | MS.gene48898:CDS | 30.0% |
! | TTTGATAGTAATGAAGCCAT+TGG | - | chr4.3:72313157-72313176 | MS.gene48898:CDS | 30.0% |
! | TTTTGTTCAATCCAGCATAA+GGG | + | chr4.3:72312208-72312227 | None:intergenic | 30.0% |
!! | TGATGGATTACTTATGAAAC+TGG | + | chr4.3:72313200-72313219 | None:intergenic | 30.0% |
!! | TTTTGAGGAATTTCAAGTGA+AGG | - | chr4.3:72311803-72311822 | MS.gene48898:CDS | 30.0% |
!!! | AATGACCAATTTTGTTGTTG+AGG | + | chr4.3:72311897-72311916 | None:intergenic | 30.0% |
!!! | CAAAATGTTGATTTTCATGG+TGG | - | chr4.3:72312254-72312273 | MS.gene48898:CDS | 30.0% |
!!! | CATACTGACTCAAATTTTCT+TGG | + | chr4.3:72313051-72313070 | None:intergenic | 30.0% |
!!! | GTCACTTTTGAGGTTAATTA+TGG | - | chr4.3:72312169-72312188 | MS.gene48898:CDS | 30.0% |
AACAAAATCTTGCAAAGTGG+TGG | - | chr4.3:72312221-72312240 | MS.gene48898:CDS | 35.0% | |
ACAACAACAATGGTTGAACA+TGG | - | chr4.3:72312298-72312317 | MS.gene48898:CDS | 35.0% | |
ACAGCAGTAATCTTAAGTGA+AGG | + | chr4.3:72312986-72313005 | None:intergenic | 35.0% | |
ACCATCAACAAAATCATCCT+CGG | - | chr4.3:72313427-72313446 | MS.gene48898:CDS | 35.0% | |
CATCATTTGAAAGATGAGCA+AGG | + | chr4.3:72312079-72312098 | None:intergenic | 35.0% | |
CTTGAATCAAGAACTGAAGT+GGG | + | chr4.3:72311948-72311967 | None:intergenic | 35.0% | |
GAAGATGAAAATGGAGAACT+AGG | + | chr4.3:72311978-72311997 | None:intergenic | 35.0% | |
GAGATTGCACTAAGAAGTAA+CGG | - | chr4.3:72312956-72312975 | MS.gene48898:CDS | 35.0% | |
GGCTTGATTACAAGTAAAGT+TGG | + | chr4.3:72312849-72312868 | None:intergenic | 35.0% | |
TCAACATTGTCATCTTCTCA+TGG | - | chr4.3:72311996-72312015 | MS.gene48898:CDS | 35.0% | |
TCTTGAATCAAGAACTGAAG+TGG | + | chr4.3:72311949-72311968 | None:intergenic | 35.0% | |
TGGATCATCAACAACAACAA+TGG | - | chr4.3:72312288-72312307 | MS.gene48898:CDS | 35.0% | |
TGGTATGAGAATGGATGATT+GGG | - | chr4.3:72312133-72312152 | MS.gene48898:CDS | 35.0% | |
TTCAAACGGTAACAATCTCA+CGG | - | chr4.3:72312745-72312764 | MS.gene48898:CDS | 35.0% | |
TTGAAGAACATGAACGACAT+TGG | + | chr4.3:72313320-72313339 | None:intergenic | 35.0% | |
TTGCAATTCTCAGGAATGAA+TGG | + | chr4.3:72312359-72312378 | None:intergenic | 35.0% | |
! | ATATTGGGTTTGGAGTACAA+TGG | - | chr4.3:72312918-72312937 | MS.gene48898:CDS | 35.0% |
! | ATTTCAAGTGAAGGGAATGT+TGG | - | chr4.3:72311812-72311831 | MS.gene48898:CDS | 35.0% |
! | CAATTGGTAAGCCTTTTCAA+AGG | - | chr4.3:72312681-72312700 | MS.gene48898:CDS | 35.0% |
! | CTTTGAAAAGGCTTACCAAT+TGG | + | chr4.3:72312683-72312702 | None:intergenic | 35.0% |
! | TAGAAAGAAGCCCTTTGAAA+AGG | + | chr4.3:72312695-72312714 | None:intergenic | 35.0% |
! | TCATGATGATGAGGAAACAA+TGG | + | chr4.3:72312452-72312471 | None:intergenic | 35.0% |
!! | GTTGATTTTCATGGTGGTTT+TGG | - | chr4.3:72312260-72312279 | MS.gene48898:CDS | 35.0% |
!!! | AGGATGATTTTGTTGATGGT+TGG | + | chr4.3:72313427-72313446 | None:intergenic | 35.0% |
!!! | TGATTTTGTTGATGGTTGGT+TGG | + | chr4.3:72313423-72313442 | None:intergenic | 35.0% |
AACAGGAAAGTTCACACCAA+TGG | + | chr4.3:72313176-72313195 | None:intergenic | 40.0% | |
AAGAACATGAACGACATTGG+TGG | + | chr4.3:72313317-72313336 | None:intergenic | 40.0% | |
AAGTTGGCAAACTGAAGAAC+AGG | + | chr4.3:72312833-72312852 | None:intergenic | 40.0% | |
AGAACATGAACGACATTGGT+GGG | + | chr4.3:72313316-72313335 | None:intergenic | 40.0% | |
AGGAACATGTTTCTTCAGTC+CGG | - | chr4.3:72313484-72313503 | MS.gene48898:CDS | 40.0% | |
AGTGAAGAAAAATGTGGTGG+TGG | - | chr4.3:72312104-72312123 | MS.gene48898:CDS | 40.0% | |
ATGAGAATGGATGATTGGGA+AGG | - | chr4.3:72312137-72312156 | MS.gene48898:CDS | 40.0% | |
CAAATATACTCTGCTGAAGC+TGG | + | chr4.3:72312571-72312590 | None:intergenic | 40.0% | |
CTGAAGAACAGGTGATATCT+CGG | + | chr4.3:72312822-72312841 | None:intergenic | 40.0% | |
CTTCACATTCAGCAACTTCA+CGG | - | chr4.3:72313516-72313535 | MS.gene48898:CDS | 40.0% | |
GTGAAGTTGCTGAATGTGAA+GGG | + | chr4.3:72313517-72313536 | None:intergenic | 40.0% | |
GTGGTATGAGAATGGATGAT+TGG | - | chr4.3:72312132-72312151 | MS.gene48898:CDS | 40.0% | |
TCCAAAGTTACGACCACTTT+CGG | + | chr4.3:72313262-72313281 | None:intergenic | 40.0% | |
TGAACTCAAACGACATGTTG+AGG | + | chr4.3:72313081-72313100 | None:intergenic | 40.0% | |
TGAAGAAACATGTTCCTCCA+TGG | + | chr4.3:72313481-72313500 | None:intergenic | 40.0% | |
TTGTCATCTTCTCATGGTAG+TGG | - | chr4.3:72312002-72312021 | MS.gene48898:CDS | 40.0% | |
! | AAGGTGAGTTCTAGTACTAC+CGG | - | chr4.3:72312530-72312549 | MS.gene48898:CDS | 40.0% |
! | ACCGAGGATGATTTTGTTGA+TGG | + | chr4.3:72313431-72313450 | None:intergenic | 40.0% |
! | ACCTTTTGATGCTTCGCAAT+TGG | + | chr4.3:72312515-72312534 | None:intergenic | 40.0% |
! | GGTAGTGGTAGTAATGGTAA+TGG | - | chr4.3:72312017-72312036 | MS.gene48898:CDS | 40.0% |
! | TCCAATTGCGAAGCATCAAA+AGG | - | chr4.3:72312511-72312530 | MS.gene48898:CDS | 40.0% |
!! | TCTCATGGTAGTGGTAGTAA+TGG | - | chr4.3:72312011-72312030 | MS.gene48898:CDS | 40.0% |
!!! | CAATCTTTTGGAGTACATCG+AGG | + | chr4.3:72313387-72313406 | None:intergenic | 40.0% |
!!! | GTCAAGATCAGTCACTTTTG+AGG | - | chr4.3:72312159-72312178 | MS.gene48898:CDS | 40.0% |
!!! | TCATGGTGGTTTTGGAGTTT+TGG | - | chr4.3:72312268-72312287 | MS.gene48898:CDS | 40.0% |
AATATCCCTTGCGCTTGAAC+CGG | + | chr4.3:72312635-72312654 | None:intergenic | 45.0% | |
AATCACCAGCTCTCACCAAT+TGG | - | chr4.3:72312665-72312684 | MS.gene48898:CDS | 45.0% | |
AATTCGATCGAACCTCTCCA+AGG | + | chr4.3:72312882-72312901 | None:intergenic | 45.0% | |
ACCTGTGAGAGGATTTCAAG+TGG | - | chr4.3:72313570-72313589 | MS.gene48898:CDS | 45.0% | |
AGAAACATGTTCCTCCATGG+AGG | + | chr4.3:72313478-72313497 | None:intergenic | 45.0% | |
AGCGTGACAAATTACCTCCA+TGG | - | chr4.3:72313461-72313480 | MS.gene48898:CDS | 45.0% | |
ATCTTGCAAAGTGGTGGTTG+TGG | - | chr4.3:72312227-72312246 | MS.gene48898:CDS | 45.0% | |
ATGGTTGAACATGGACGCTT+CGG | - | chr4.3:72312307-72312326 | MS.gene48898:CDS | 45.0% | |
CGTGAAGTTGCTGAATGTGA+AGG | + | chr4.3:72313518-72313537 | None:intergenic | 45.0% | |
GAATGTGAAGGGAGAGAAAC+CGG | + | chr4.3:72313506-72313525 | None:intergenic | 45.0% | |
GATGTTGAAGACCCTTATGC+TGG | - | chr4.3:72312194-72312213 | MS.gene48898:CDS | 45.0% | |
GCTGATAGAAGCTGGTAATC+CGG | - | chr4.3:72312613-72312632 | MS.gene48898:CDS | 45.0% | |
GGTAACACGTTGCAATTCTC+AGG | + | chr4.3:72312368-72312387 | None:intergenic | 45.0% | |
GTGACAAATTACCTCCATGG+AGG | - | chr4.3:72313464-72313483 | MS.gene48898:CDS | 45.0% | |
TAATCCATCATGCTTCCCTG+TGG | - | chr4.3:72313210-72313229 | MS.gene48898:CDS | 45.0% | |
TCAAAGAAATGACCCGGTAG+AGG | + | chr4.3:72313142-72313161 | None:intergenic | 45.0% | |
TCAATCTCGTTGCAAGACGA+GGG | + | chr4.3:72313016-72313035 | None:intergenic | 45.0% | |
TCCACTTGAAATCCTCTCAC+AGG | + | chr4.3:72313574-72313593 | None:intergenic | 45.0% | |
TCTTGACCAGAATCCAAGAG+CGG | + | chr4.3:72312389-72312408 | None:intergenic | 45.0% | |
TGCCCTTTGAACCAAACACT+CGG | + | chr4.3:72313551-72313570 | None:intergenic | 45.0% | |
TGGGAAGAGGAACATCCATT+CGG | + | chr4.3:72313297-72313316 | None:intergenic | 45.0% | |
TTACCAACAACAGCAGTCGT+CGG | - | chr4.3:72312484-72312503 | MS.gene48898:CDS | 45.0% | |
! | AAGCCGAGTGTTTGGTTCAA+AGG | - | chr4.3:72313545-72313564 | MS.gene48898:CDS | 45.0% |
! | AGCCGAGTGTTTGGTTCAAA+GGG | - | chr4.3:72313546-72313565 | MS.gene48898:CDS | 45.0% |
! | ATGGAGGTAATTTGTCACGC+TGG | + | chr4.3:72313462-72313481 | None:intergenic | 45.0% |
! | GGCTTTGCCCTTAACTTTTG+AGG | - | chr4.3:72311788-72311807 | MS.gene48898:CDS | 45.0% |
! | GTAATTTGTCACGCTGGTTG+TGG | + | chr4.3:72313456-72313475 | None:intergenic | 45.0% |
! | TGCTGCAGATCATGATGATG+AGG | + | chr4.3:72312461-72312480 | None:intergenic | 45.0% |
!! | CTGGTCAAGAAGTGTTTGCT+AGG | - | chr4.3:72312399-72312418 | MS.gene48898:CDS | 45.0% |
!! | GAAGAAAAATGTGGTGGTGG+TGG | - | chr4.3:72312107-72312126 | MS.gene48898:CDS | 45.0% |
AAAGCAGCTAAGGCCGAAAG+TGG | - | chr4.3:72313246-72313265 | MS.gene48898:CDS | 50.0% | |
ACCTCTCCAAGGCTTCAATG+AGG | + | chr4.3:72312871-72312890 | None:intergenic | 50.0% | |
ACTGCTGAGCTGATAGAAGC+TGG | - | chr4.3:72312605-72312624 | MS.gene48898:CDS | 50.0% | |
ATGGACGCTTCGGTTCAACA+AGG | - | chr4.3:72312317-72312336 | MS.gene48898:CDS | 50.0% | |
CAGCATAGCACAAGAGTGGA+AGG | + | chr4.3:72313604-72313623 | None:intergenic | 50.0% | |
CCTCTCCAAGGCTTCAATGA+GGG | + | chr4.3:72312870-72312889 | None:intergenic | 50.0% | |
CTCAATCTCGTTGCAAGACG+AGG | + | chr4.3:72313017-72313036 | None:intergenic | 50.0% | |
CTTCCACTCTTGTGCTATGC+TGG | - | chr4.3:72313602-72313621 | MS.gene48898:CDS | 50.0% | |
CTTGCCATCATGTCCTCTAC+CGG | - | chr4.3:72313126-72313145 | MS.gene48898:CDS | 50.0% | |
GCCGAAAGTGGTCGTAACTT+TGG | - | chr4.3:72313258-72313277 | MS.gene48898:CDS | 50.0% | |
GCTTACCAATTGGTGAGAGC+TGG | + | chr4.3:72312673-72312692 | None:intergenic | 50.0% | |
GGACAAAAACTGCGACCGAA+TGG | - | chr4.3:72313279-72313298 | MS.gene48898:CDS | 50.0% | |
GGTTCAAGCGCAAGGGATAT+TGG | - | chr4.3:72312634-72312653 | MS.gene48898:CDS | 50.0% | |
GTAATCCGGTTCAAGCGCAA+GGG | - | chr4.3:72312627-72312646 | MS.gene48898:CDS | 50.0% | |
GTGTTACCGCTCTTGGATTC+TGG | - | chr4.3:72312380-72312399 | MS.gene48898:CDS | 50.0% | |
TCAAGCCCTCATTGAAGCCT+TGG | - | chr4.3:72312862-72312881 | MS.gene48898:CDS | 50.0% | |
TGAACGACATTGGTGGGAAG+AGG | + | chr4.3:72313310-72313329 | None:intergenic | 50.0% | |
TGGACGCTTCGGTTCAACAA+GGG | - | chr4.3:72312318-72312337 | MS.gene48898:CDS | 50.0% | |
TTGCAACGTGTTACCGCTCT+TGG | - | chr4.3:72312373-72312392 | MS.gene48898:CDS | 50.0% | |
TTGCCATCATGTCCTCTACC+GGG | - | chr4.3:72313127-72313146 | MS.gene48898:CDS | 50.0% | |
!! | GAAAAATGTGGTGGTGGTGG+TGG | - | chr4.3:72312110-72312129 | MS.gene48898:CDS | 50.0% |
!! | TGGTGGTGGTGGTATGAGAA+TGG | - | chr4.3:72312124-72312143 | MS.gene48898:CDS | 50.0% |
AAGCGCAAGGGATATTGGCG+CGG | - | chr4.3:72312639-72312658 | MS.gene48898:CDS | 55.0% | |
CAACCGACGACTGCTGTTGT+TGG | + | chr4.3:72312490-72312509 | None:intergenic | 55.0% | |
CCCTCATTGAAGCCTTGGAG+AGG | - | chr4.3:72312867-72312886 | MS.gene48898:CDS | 55.0% | |
CTCTTGTGCTATGCTGGCAG+AGG | - | chr4.3:72313608-72313627 | MS.gene48898:CDS | 55.0% | |
CTGCCAGCATAGCACAAGAG+TGG | + | chr4.3:72313608-72313627 | None:intergenic | 55.0% | |
CTGGCTGCTTGCATCATCTC+CGG | + | chr4.3:72312552-72312571 | None:intergenic | 55.0% | |
GGAAGCTCAAGCCGAGTGTT+TGG | - | chr4.3:72313537-72313556 | MS.gene48898:CDS | 55.0% | |
GGTAATCCGGTTCAAGCGCA+AGG | - | chr4.3:72312626-72312645 | MS.gene48898:CDS | 55.0% | |
TGACCCGGTAGAGGACATGA+TGG | + | chr4.3:72313133-72313152 | None:intergenic | 55.0% | |
TGCTAGGAGACATCAGCAGC+AGG | - | chr4.3:72312415-72312434 | MS.gene48898:CDS | 55.0% | |
! | AGAGCCACAGGGAAGCATGA+TGG | + | chr4.3:72313217-72313236 | None:intergenic | 55.0% |
!! | AAATGTGGTGGTGGTGGTGG+TGG | - | chr4.3:72312113-72312132 | MS.gene48898:CDS | 55.0% |
!! | GTTCAAAGGGCACCTGTGAG+AGG | - | chr4.3:72313559-72313578 | MS.gene48898:CDS | 55.0% |
! | CACGCTGGTTGTGGTGACCG+AGG | + | chr4.3:72313447-72313466 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 72311783 | 72313666 | 72311783 | ID=MS.gene48898 |
chr4.3 | mRNA | 72311783 | 72313666 | 72311783 | ID=MS.gene48898.t1;Parent=MS.gene48898 |
chr4.3 | exon | 72311783 | 72313666 | 72311783 | ID=MS.gene48898.t1.exon1;Parent=MS.gene48898.t1 |
chr4.3 | CDS | 72311783 | 72313666 | 72311783 | ID=cds.MS.gene48898.t1;Parent=MS.gene48898.t1 |
Gene Sequence |
Protein sequence |