Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059248.t1 | XP_013455102.1 | 93 | 627 | 41 | 3 | 1 | 626 | 1 | 625 | 6.50E-296 | 1026.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059248.t1 | O81316 | 54.0 | 363 | 152 | 8 | 267 | 626 | 205 | 555 | 1.8e-100 | 368.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059248.t1 | A0A072UTD0 | 93.0 | 627 | 41 | 3 | 1 | 626 | 1 | 625 | 4.7e-296 | 1026.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene059248.t1 | TF | GRAS |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene20122 | MS.gene059248 | PPI |
MS.gene96423 | MS.gene059248 | PPI |
MS.gene059248 | MS.gene010745 | PPI |
MS.gene96424 | MS.gene059248 | PPI |
MS.gene82054 | MS.gene059248 | PPI |
MS.gene059248 | MS.gene010744 | PPI |
MS.gene82053 | MS.gene059248 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059248.t1 | MTR_4g026485 | 93.620 | 627 | 37 | 3 | 1 | 626 | 1 | 625 | 0.0 | 1093 |
MS.gene059248.t1 | MTR_0092s0100 | 53.235 | 541 | 200 | 12 | 129 | 626 | 199 | 729 | 1.98e-166 | 493 |
MS.gene059248.t1 | MTR_0092s0100 | 35.638 | 188 | 91 | 9 | 1 | 171 | 1 | 175 | 3.15e-11 | 67.0 |
MS.gene059248.t1 | MTR_0092s0100 | 53.235 | 541 | 200 | 12 | 129 | 626 | 202 | 732 | 2.19e-166 | 493 |
MS.gene059248.t1 | MTR_0092s0100 | 35.638 | 188 | 91 | 9 | 1 | 171 | 4 | 178 | 3.27e-11 | 67.0 |
MS.gene059248.t1 | MTR_8g077940 | 34.054 | 370 | 226 | 10 | 268 | 626 | 180 | 542 | 1.18e-52 | 189 |
MS.gene059248.t1 | MTR_7g027190 | 28.404 | 426 | 254 | 15 | 231 | 626 | 270 | 674 | 2.01e-32 | 133 |
MS.gene059248.t1 | MTR_3g065980 | 26.913 | 379 | 242 | 9 | 271 | 625 | 173 | 540 | 3.83e-31 | 128 |
MS.gene059248.t1 | MTR_4g076020 | 28.261 | 368 | 224 | 11 | 273 | 625 | 87 | 429 | 1.72e-30 | 125 |
MS.gene059248.t1 | MTR_4g077760 | 29.897 | 388 | 221 | 15 | 267 | 625 | 190 | 555 | 2.92e-30 | 125 |
MS.gene059248.t1 | MTR_5g094450 | 27.056 | 377 | 247 | 10 | 271 | 625 | 162 | 532 | 3.79e-30 | 125 |
MS.gene059248.t1 | MTR_5g097480 | 25.135 | 370 | 259 | 8 | 271 | 625 | 178 | 544 | 3.75e-29 | 122 |
MS.gene059248.t1 | MTR_7g074650 | 27.371 | 369 | 231 | 8 | 275 | 625 | 443 | 792 | 8.56e-29 | 122 |
MS.gene059248.t1 | MTR_3g056110 | 25.781 | 384 | 243 | 12 | 269 | 625 | 174 | 542 | 9.06e-29 | 121 |
MS.gene059248.t1 | MTR_2g026250 | 25.858 | 379 | 252 | 11 | 269 | 626 | 227 | 597 | 4.08e-26 | 113 |
MS.gene059248.t1 | MTR_4g102790 | 25.526 | 380 | 246 | 11 | 271 | 624 | 293 | 661 | 2.74e-25 | 111 |
MS.gene059248.t1 | MTR_1g069725 | 26.648 | 364 | 250 | 10 | 271 | 626 | 110 | 464 | 4.03e-25 | 109 |
MS.gene059248.t1 | MTR_2g082090 | 24.344 | 419 | 266 | 12 | 236 | 624 | 181 | 578 | 9.59e-25 | 109 |
MS.gene059248.t1 | MTR_4g133660 | 25.199 | 377 | 253 | 10 | 271 | 626 | 176 | 544 | 9.23e-24 | 105 |
MS.gene059248.t1 | MTR_1g029420 | 26.596 | 376 | 246 | 10 | 271 | 625 | 226 | 592 | 1.45e-23 | 105 |
MS.gene059248.t1 | MTR_3g089055 | 25.538 | 372 | 255 | 8 | 271 | 625 | 199 | 565 | 5.69e-23 | 103 |
MS.gene059248.t1 | MTR_3g089055 | 25.538 | 372 | 255 | 8 | 271 | 625 | 204 | 570 | 6.13e-23 | 103 |
MS.gene059248.t1 | MTR_5g058860 | 25.369 | 406 | 266 | 15 | 251 | 626 | 100 | 498 | 2.13e-21 | 98.6 |
MS.gene059248.t1 | MTR_5g019750 | 28.205 | 234 | 150 | 8 | 402 | 626 | 71 | 295 | 6.61e-21 | 94.0 |
MS.gene059248.t1 | MTR_4g104020 | 24.304 | 395 | 265 | 12 | 257 | 626 | 136 | 521 | 1.59e-20 | 95.9 |
MS.gene059248.t1 | MTR_3g072710 | 27.541 | 305 | 196 | 11 | 338 | 626 | 206 | 501 | 1.08e-19 | 93.2 |
MS.gene059248.t1 | MTR_7g109580 | 23.364 | 428 | 292 | 10 | 230 | 625 | 131 | 554 | 1.29e-19 | 93.2 |
MS.gene059248.t1 | MTR_2g097473 | 22.821 | 390 | 273 | 9 | 252 | 624 | 275 | 653 | 3.96e-19 | 92.0 |
MS.gene059248.t1 | MTR_8g093070 | 25.727 | 447 | 286 | 17 | 205 | 624 | 68 | 495 | 8.30e-19 | 90.5 |
MS.gene059248.t1 | MTR_4g097080 | 21.867 | 375 | 268 | 11 | 271 | 625 | 134 | 503 | 2.62e-18 | 89.0 |
MS.gene059248.t1 | MTR_2g097390 | 24.800 | 375 | 251 | 12 | 271 | 624 | 276 | 640 | 1.08e-17 | 87.4 |
MS.gene059248.t1 | MTR_2g034260 | 23.834 | 386 | 261 | 11 | 266 | 625 | 206 | 584 | 1.97e-17 | 86.3 |
MS.gene059248.t1 | MTR_2g097467 | 22.410 | 415 | 284 | 11 | 235 | 624 | 252 | 653 | 5.42e-17 | 85.1 |
MS.gene059248.t1 | MTR_2g034280 | 24.934 | 381 | 261 | 12 | 266 | 625 | 199 | 575 | 6.52e-17 | 84.7 |
MS.gene059248.t1 | MTR_2g097310 | 23.529 | 374 | 257 | 10 | 271 | 624 | 273 | 637 | 9.15e-17 | 84.3 |
MS.gene059248.t1 | MTR_2g097410 | 22.043 | 372 | 261 | 8 | 275 | 624 | 376 | 740 | 1.12e-16 | 84.3 |
MS.gene059248.t1 | MTR_7g062120 | 21.376 | 407 | 276 | 10 | 249 | 625 | 348 | 740 | 1.21e-16 | 84.3 |
MS.gene059248.t1 | MTR_2g097380 | 23.656 | 279 | 187 | 6 | 262 | 532 | 216 | 476 | 4.15e-16 | 82.0 |
MS.gene059248.t1 | MTR_2g034250 | 24.479 | 384 | 262 | 12 | 266 | 625 | 206 | 585 | 9.72e-16 | 81.3 |
MS.gene059248.t1 | MTR_8g442410 | 22.165 | 388 | 277 | 9 | 259 | 625 | 142 | 525 | 1.10e-15 | 80.9 |
MS.gene059248.t1 | MTR_4g064200 | 21.774 | 372 | 266 | 8 | 271 | 624 | 285 | 649 | 4.31e-15 | 79.3 |
MS.gene059248.t1 | MTR_2g097350 | 23.670 | 376 | 254 | 13 | 271 | 624 | 275 | 639 | 6.28e-15 | 78.6 |
MS.gene059248.t1 | MTR_2g097463 | 20.964 | 415 | 290 | 12 | 235 | 624 | 253 | 654 | 8.85e-15 | 78.2 |
MS.gene059248.t1 | MTR_2g089100 | 22.829 | 403 | 249 | 13 | 271 | 624 | 53 | 442 | 1.65e-14 | 76.6 |
MS.gene059248.t1 | MTR_4g064150 | 23.077 | 377 | 261 | 9 | 271 | 624 | 362 | 732 | 3.35e-14 | 76.6 |
MS.gene059248.t1 | MTR_5g015490 | 25.490 | 204 | 143 | 3 | 271 | 467 | 115 | 316 | 5.74e-14 | 75.1 |
MS.gene059248.t1 | MTR_4g064120 | 25.271 | 277 | 185 | 7 | 271 | 530 | 255 | 526 | 1.59e-13 | 73.9 |
MS.gene059248.t1 | MTR_4g064180 | 24.910 | 277 | 186 | 7 | 271 | 530 | 255 | 526 | 2.56e-13 | 73.6 |
MS.gene059248.t1 | MTR_2g099110 | 21.739 | 368 | 248 | 9 | 289 | 625 | 93 | 451 | 2.59e-13 | 72.8 |
MS.gene059248.t1 | MTR_0092s0060 | 35.638 | 188 | 91 | 9 | 1 | 171 | 1 | 175 | 5.75e-12 | 65.5 |
MS.gene059248.t1 | MTR_4g064160 | 18.913 | 423 | 295 | 11 | 236 | 624 | 275 | 683 | 1.27e-11 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059248.t1 | AT4G00150 | 42.314 | 631 | 280 | 18 | 4 | 626 | 1 | 555 | 1.57e-133 | 402 |
MS.gene059248.t1 | AT2G45160 | 40.658 | 669 | 322 | 23 | 4 | 626 | 1 | 640 | 2.31e-112 | 350 |
MS.gene059248.t1 | AT3G60630 | 39.124 | 662 | 325 | 26 | 4 | 626 | 1 | 623 | 1.84e-108 | 340 |
MS.gene059248.t1 | AT4G36710 | 30.679 | 427 | 260 | 13 | 218 | 625 | 76 | 485 | 5.47e-51 | 184 |
MS.gene059248.t1 | AT2G04890 | 28.495 | 372 | 237 | 9 | 271 | 625 | 54 | 413 | 1.76e-35 | 139 |
MS.gene059248.t1 | AT5G66770 | 28.497 | 386 | 251 | 12 | 257 | 625 | 207 | 584 | 2.83e-35 | 141 |
MS.gene059248.t1 | AT2G01570 | 26.431 | 367 | 248 | 7 | 271 | 625 | 225 | 581 | 4.95e-31 | 128 |
MS.gene059248.t1 | AT3G54220 | 27.747 | 364 | 237 | 7 | 275 | 624 | 298 | 649 | 9.93e-31 | 128 |
MS.gene059248.t1 | AT5G17490 | 27.717 | 368 | 241 | 10 | 271 | 625 | 161 | 516 | 7.12e-30 | 124 |
MS.gene059248.t1 | AT3G03450 | 25.410 | 366 | 258 | 6 | 271 | 625 | 184 | 545 | 8.82e-30 | 124 |
MS.gene059248.t1 | AT3G50650 | 27.132 | 387 | 241 | 12 | 263 | 625 | 173 | 542 | 1.16e-28 | 120 |
MS.gene059248.t1 | AT1G14920 | 25.549 | 364 | 255 | 8 | 271 | 625 | 173 | 529 | 1.22e-28 | 120 |
MS.gene059248.t1 | AT5G48150 | 24.403 | 377 | 268 | 8 | 264 | 625 | 116 | 490 | 2.20e-28 | 119 |
MS.gene059248.t1 | AT5G48150 | 24.403 | 377 | 268 | 8 | 264 | 625 | 116 | 490 | 2.20e-28 | 119 |
MS.gene059248.t1 | AT5G48150 | 24.403 | 377 | 268 | 8 | 264 | 625 | 116 | 490 | 2.20e-28 | 119 |
MS.gene059248.t1 | AT5G48150 | 24.403 | 377 | 268 | 8 | 264 | 625 | 116 | 490 | 2.20e-28 | 119 |
MS.gene059248.t1 | AT1G66350 | 25.000 | 368 | 248 | 10 | 271 | 626 | 156 | 507 | 2.31e-28 | 119 |
MS.gene059248.t1 | AT4G17230 | 27.154 | 383 | 249 | 11 | 264 | 625 | 152 | 525 | 1.06e-27 | 117 |
MS.gene059248.t1 | AT4G17230 | 27.154 | 383 | 249 | 11 | 264 | 625 | 152 | 525 | 1.06e-27 | 117 |
MS.gene059248.t1 | AT5G41920 | 25.936 | 374 | 241 | 9 | 271 | 625 | 44 | 400 | 4.14e-27 | 114 |
MS.gene059248.t1 | AT1G50600 | 23.786 | 412 | 271 | 10 | 237 | 625 | 135 | 526 | 2.17e-26 | 114 |
MS.gene059248.t1 | AT1G50600 | 23.786 | 412 | 271 | 10 | 237 | 625 | 206 | 597 | 6.78e-26 | 112 |
MS.gene059248.t1 | AT1G50600 | 23.786 | 412 | 271 | 10 | 237 | 625 | 210 | 601 | 9.79e-26 | 112 |
MS.gene059248.t1 | AT1G21450 | 24.595 | 370 | 262 | 7 | 271 | 625 | 226 | 593 | 1.05e-25 | 112 |
MS.gene059248.t1 | AT1G63100 | 25.587 | 383 | 239 | 13 | 276 | 624 | 283 | 653 | 6.06e-21 | 97.8 |
MS.gene059248.t1 | AT1G63100 | 25.587 | 383 | 239 | 13 | 276 | 624 | 258 | 628 | 7.39e-21 | 97.4 |
MS.gene059248.t1 | AT4G08250 | 26.578 | 301 | 202 | 10 | 338 | 624 | 181 | 476 | 4.45e-19 | 91.3 |
MS.gene059248.t1 | AT1G55580 | 23.934 | 305 | 217 | 6 | 336 | 625 | 141 | 445 | 6.44e-19 | 90.5 |
MS.gene059248.t1 | AT5G59450 | 22.252 | 373 | 270 | 7 | 271 | 625 | 228 | 598 | 7.06e-19 | 91.3 |
MS.gene059248.t1 | AT4G37650 | 20.052 | 384 | 277 | 8 | 271 | 625 | 147 | 529 | 8.49e-16 | 81.3 |
MS.gene059248.t1 | AT3G46600 | 22.312 | 372 | 267 | 7 | 271 | 625 | 213 | 579 | 1.32e-15 | 80.9 |
MS.gene059248.t1 | AT3G46600 | 22.460 | 374 | 264 | 8 | 271 | 625 | 181 | 547 | 4.12e-15 | 79.0 |
MS.gene059248.t1 | AT3G46600 | 22.460 | 374 | 264 | 8 | 271 | 625 | 5 | 371 | 4.77e-15 | 77.8 |
MS.gene059248.t1 | AT1G07530 | 20.256 | 390 | 297 | 8 | 249 | 624 | 375 | 764 | 6.80e-15 | 79.0 |
MS.gene059248.t1 | AT1G07520 | 26.238 | 202 | 138 | 5 | 275 | 467 | 324 | 523 | 5.06e-14 | 75.9 |
MS.gene059248.t1 | AT1G07520 | 26.238 | 202 | 138 | 5 | 275 | 467 | 159 | 358 | 5.15e-14 | 75.5 |
MS.gene059248.t1 | AT1G07520 | 26.238 | 202 | 138 | 5 | 275 | 467 | 159 | 358 | 5.15e-14 | 75.5 |
MS.gene059248.t1 | AT1G07520 | 26.238 | 202 | 138 | 5 | 275 | 467 | 323 | 522 | 5.32e-14 | 75.9 |
MS.gene059248.t1 | AT2G29065 | 22.606 | 376 | 260 | 10 | 275 | 624 | 257 | 627 | 4.76e-12 | 69.3 |
MS.gene059248.t1 | AT1G50420 | 29.570 | 186 | 119 | 4 | 271 | 448 | 58 | 239 | 1.02e-11 | 68.2 |
MS.gene059248.t1 | AT2G29060 | 21.180 | 373 | 272 | 10 | 271 | 624 | 322 | 691 | 1.24e-11 | 68.2 |
MS.gene059248.t1 | AT2G29060 | 21.180 | 373 | 272 | 10 | 271 | 624 | 285 | 654 | 1.35e-11 | 68.2 |
Find 119 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTAATGCCTTTCAATCTTT+TGG | 0.183368 | 4.4:+75395329 | None:intergenic |
TTGCAATGTGTTACCGCTTT+TGG | 0.210898 | 4.4:-75396352 | MS.gene059248:CDS |
CATGTTATTGATTTCGATAT+TGG | 0.238642 | 4.4:-75395823 | MS.gene059248:CDS |
TTGAAATTCCTCAAAAGTTA+AGG | 0.300516 | 4.4:+75396926 | None:intergenic |
ATGTTATTGATTTCGATATT+GGG | 0.325426 | 4.4:-75395822 | MS.gene059248:CDS |
GACAATGTTGAAGATGAAAA+TGG | 0.331833 | 4.4:+75396738 | None:intergenic |
TCCAAAGTTACGACCACTTT+CGG | 0.339309 | 4.4:+75395466 | None:intergenic |
ATCAACCTCAACAACAAAAT+TGG | 0.340640 | 4.4:-75396833 | MS.gene059248:CDS |
TGATGGATTACTTATGAAAC+TGG | 0.357205 | 4.4:+75395528 | None:intergenic |
ATTGATTTCGATATTGGGTT+TGG | 0.358381 | 4.4:-75395817 | MS.gene059248:CDS |
TGAAATTCCTCAAAAGTTAA+GGG | 0.383228 | 4.4:+75396927 | None:intergenic |
GGTTCAAGCGCAAGGGATAT+TGG | 0.384808 | 4.4:-75396091 | MS.gene059248:CDS |
TGAATGAAGCATTAACTGTA+AGG | 0.398966 | 4.4:+75395999 | None:intergenic |
GGAAGCTCAAGCCGAGTGTT+TGG | 0.423122 | 4.4:-75395188 | MS.gene059248:CDS |
CTTCCACTCTTGTGCTATGC+TGG | 0.425488 | 4.4:-75395123 | MS.gene059248:CDS |
CAAATATACTCTGCTGAAGC+TGG | 0.434387 | 4.4:+75396157 | None:intergenic |
ATTTCAAGTGAAGGGAATGT+TGG | 0.436223 | 4.4:-75396910 | MS.gene059248:CDS |
TTACTTATGAAACTGGAAAC+AGG | 0.436478 | 4.4:+75395535 | None:intergenic |
AATATCCCTTGCGCTTGAAC+CGG | 0.438162 | 4.4:+75396093 | None:intergenic |
TGGTGGTGGTGGTATGAGAA+TGG | 0.439587 | 4.4:-75396601 | MS.gene059248:CDS |
GCCGAAAGTGGTCGTAACTT+TGG | 0.444136 | 4.4:-75395467 | MS.gene059248:CDS |
TCAAGCCCTCATTGAAGCCT+TGG | 0.450274 | 4.4:-75395863 | MS.gene059248:CDS |
CTTTGAAAAGACTTACCAAT+TGG | 0.458020 | 4.4:+75396045 | None:intergenic |
TAATGTGAAGGGAGAGAAAC+CGG | 0.461239 | 4.4:+75395222 | None:intergenic |
AACAAAATCTTGCAAAATGT+TGG | 0.463549 | 4.4:-75396504 | MS.gene059248:CDS |
AAGCCGAGTGTTTGGTTCAA+AGG | 0.464484 | 4.4:-75395180 | MS.gene059248:CDS |
TTGCAATTCTCAGGAATGAA+TGG | 0.464532 | 4.4:+75396369 | None:intergenic |
TGGTATGAGAATGGAGGATT+GGG | 0.465608 | 4.4:-75396592 | MS.gene059248:CDS |
AAGTTGGCAAACTGAAGAAC+AGG | 0.472756 | 4.4:+75395895 | None:intergenic |
AGCCGAGTGTTTGGTTCAAA+GGG | 0.474056 | 4.4:-75395179 | MS.gene059248:CDS |
GAAGATGAAAATGGAGAACT+AGG | 0.474745 | 4.4:+75396747 | None:intergenic |
AACAGGTGATATCTCGGAAA+AGG | 0.483647 | 4.4:+75395912 | None:intergenic |
AATCACCAGCTCTCACCAAT+TGG | 0.485962 | 4.4:-75396060 | MS.gene059248:CDS |
AAGGGCTTCTTTCTACATGA+AGG | 0.487466 | 4.4:-75396025 | MS.gene059248:CDS |
GGCTTGATTACAAGTAAAGT+TGG | 0.491191 | 4.4:+75395879 | None:intergenic |
CAGTTAATGCTTCATTCAAA+CGG | 0.491869 | 4.4:-75395994 | MS.gene059248:CDS |
AACTCATCTCAATTTCAACT+TGG | 0.495720 | 4.4:-75395090 | MS.gene059248:CDS |
TTTGAGGAATTTCAAGTGAA+GGG | 0.497110 | 4.4:-75396918 | MS.gene059248:CDS |
GCTGATAGAAGCTGGTAATC+CGG | 0.498189 | 4.4:-75396112 | MS.gene059248:CDS |
AGGAACATGTTTCTTCAGTC+CGG | 0.498389 | 4.4:-75395241 | MS.gene059248:CDS |
GGTAACACATTGCAATTCTC+AGG | 0.500098 | 4.4:+75396360 | None:intergenic |
CTTGCCATCATGTTCTCTAC+CGG | 0.504309 | 4.4:-75395599 | MS.gene059248:CDS |
GTGGTATGAGAATGGAGGAT+TGG | 0.504718 | 4.4:-75396593 | MS.gene059248:CDS |
TTCAAATAGCAATACTTCAA+TGG | 0.504902 | 4.4:-75396682 | MS.gene059248:CDS |
TTTGATAGTAATGAAGCCAT+TGG | 0.505073 | 4.4:-75395568 | MS.gene059248:CDS |
GTAATTTGTCACGCTGGTTG+TGG | 0.506339 | 4.4:+75395272 | None:intergenic |
CTGAAGAACAGGTGATATCT+CGG | 0.507582 | 4.4:+75395906 | None:intergenic |
CTTCACATTAAGCAACTTCA+CGG | 0.507744 | 4.4:-75395209 | MS.gene059248:CDS |
TCCAATTGCGAAGCAGCAAA+AGG | 0.508239 | 4.4:-75396214 | MS.gene059248:CDS |
TCTTGAATCAAGAACTGAAG+TGG | 0.511894 | 4.4:+75396776 | None:intergenic |
TTGGTCAAGAAGTGTTTGCT+AGG | 0.512619 | 4.4:-75396326 | MS.gene059248:CDS |
TCCACTTGAAATCCTCTCAC+AGG | 0.520356 | 4.4:+75395154 | None:intergenic |
CGTGAAGTTGCTTAATGTGA+AGG | 0.521119 | 4.4:+75395210 | None:intergenic |
CTGGATGCTTGCATCATCTC+CGG | 0.537282 | 4.4:+75396176 | None:intergenic |
AGAGTTGAACATGAACGCTT+CGG | 0.540695 | 4.4:-75396418 | MS.gene059248:CDS |
TGAACGACATTGGTGGGAAG+AGG | 0.544276 | 4.4:+75395418 | None:intergenic |
TTGTCATCTTCTCATGGTAG+TGG | 0.544818 | 4.4:-75396720 | MS.gene059248:CDS |
ATCTTGCAAAATGTTGGTTG+TGG | 0.549449 | 4.4:-75396498 | MS.gene059248:CDS |
TGCTAGGAGACATCAGCAGC+AGG | 0.551740 | 4.4:-75396310 | MS.gene059248:CDS |
GGTAATCCGGTTCAAGCGCA+AGG | 0.552039 | 4.4:-75396099 | MS.gene059248:CDS |
TTCAATCTCGTTGCAAGACG+AGG | 0.552115 | 4.4:+75395711 | None:intergenic |
TCAACATTGTCATCTTCTCA+TGG | 0.552805 | 4.4:-75396726 | MS.gene059248:CDS |
GGTAGTGGTAGTAATGGTAA+TGG | 0.556024 | 4.4:-75396705 | MS.gene059248:CDS |
AAGGTGAGTTCTAGTACTAC+CGG | 0.560768 | 4.4:-75396195 | MS.gene059248:CDS |
CTCTTGTGCTATGCTGGCAG+AGG | 0.560950 | 4.4:-75395117 | MS.gene059248:CDS |
ACTGCTGAGCTGATAGAAGC+TGG | 0.561856 | 4.4:-75396120 | MS.gene059248:CDS |
AAAGCAGCTAAGGCCGAAAG+TGG | 0.562649 | 4.4:-75395479 | MS.gene059248:CDS |
CCTCTCCAAGGCTTCAATGA+GGG | 0.564144 | 4.4:+75395858 | None:intergenic |
ACTTACCAATTGGTGAGAGC+TGG | 0.564277 | 4.4:+75396055 | None:intergenic |
ATGTACTCCAAAAGATTGAA+AGG | 0.570089 | 4.4:-75395336 | MS.gene059248:CDS |
GTTCAAAGGGCACCTGTGAG+AGG | 0.570717 | 4.4:-75395166 | MS.gene059248:CDS |
AGAGCCACAGGGAAGCATGA+TGG | 0.571215 | 4.4:+75395511 | None:intergenic |
CATCATTTGAAAGATGAGCA+AGG | 0.573001 | 4.4:+75396646 | None:intergenic |
TCTCATGGTAGTGGTAGTAA+TGG | 0.576556 | 4.4:-75396711 | MS.gene059248:CDS |
GTGAAGTTGCTTAATGTGAA+GGG | 0.579228 | 4.4:+75395211 | None:intergenic |
ACCATCAACAAAATCATCCT+CGG | 0.579390 | 4.4:-75395298 | MS.gene059248:CDS |
TGAAGAAACATGTTCCTCCA+TGG | 0.581165 | 4.4:+75395247 | None:intergenic |
AGAACATGAACGACATTGGT+GGG | 0.584347 | 4.4:+75395412 | None:intergenic |
CTTGAATCAAGAACTGAAGT+GGG | 0.584678 | 4.4:+75396777 | None:intergenic |
CAACCGACGACTGCTGTTGG+TGG | 0.588918 | 4.4:+75396238 | None:intergenic |
AAGAACATGAACGACATTGG+TGG | 0.589769 | 4.4:+75395411 | None:intergenic |
TGGGAAGAGGAACATCCATT+CGG | 0.591209 | 4.4:+75395431 | None:intergenic |
TTCAAACGGTAACAATCTCA+CGG | 0.592949 | 4.4:-75395980 | MS.gene059248:CDS |
AACAGGAAAGTTCACACCAA+TGG | 0.593516 | 4.4:+75395552 | None:intergenic |
CCCTCATTGAAGCCTTGGAG+AGG | 0.594395 | 4.4:-75395858 | MS.gene059248:CDS |
TTGAAGAACATGAACGACAT+TGG | 0.594485 | 4.4:+75395408 | None:intergenic |
AGCGTGACAAATTACCTCCA+TGG | 0.597025 | 4.4:-75395264 | MS.gene059248:CDS |
CAGCATAGCACAAGAGTGGA+AGG | 0.597390 | 4.4:+75395124 | None:intergenic |
GAGATTGTACTAAGAAGTAA+CGG | 0.599321 | 4.4:-75395769 | MS.gene059248:CDS |
TCAATCTCGTTGCAAGACGA+GGG | 0.604678 | 4.4:+75395712 | None:intergenic |
ACCTCTCCAAGGCTTCAATG+AGG | 0.608874 | 4.4:+75395857 | None:intergenic |
CTGCCAGCATAGCACAAGAG+TGG | 0.610500 | 4.4:+75395120 | None:intergenic |
TGCTGCAGCTCATGATGATG+AGG | 0.610866 | 4.4:+75396267 | None:intergenic |
TGGTGGTGGTATGAGAATGG+AGG | 0.610885 | 4.4:-75396598 | MS.gene059248:CDS |
TAAAGAAGATTATTGCTATG+TGG | 0.612360 | 4.4:-75396802 | MS.gene059248:CDS |
ACAACAGTAATCTTAAGTGA+AGG | 0.621459 | 4.4:+75395742 | None:intergenic |
TTGCCATCATGTTCTCTACC+GGG | 0.621988 | 4.4:-75395598 | MS.gene059248:CDS |
TCATGATGATGAGGAAACAA+TGG | 0.622084 | 4.4:+75396276 | None:intergenic |
AATTCGATCGAACCTCTCCA+AGG | 0.628009 | 4.4:+75395846 | None:intergenic |
ATGAGAATGGAGGATTGGGA+AGG | 0.628687 | 4.4:-75396588 | MS.gene059248:CDS |
ATGGAGGTAATTTGTCACGC+TGG | 0.629161 | 4.4:+75395266 | None:intergenic |
GAACAACCGACGACTGCTGT+TGG | 0.632033 | 4.4:+75396235 | None:intergenic |
AAGATGAAAATGGAGAACTA+GGG | 0.633076 | 4.4:+75396748 | None:intergenic |
ATGAACGCTTCGGTTCAACA+AGG | 0.637398 | 4.4:-75396408 | MS.gene059248:CDS |
GTAATCCGGTTCAAGCGCAA+GGG | 0.638818 | 4.4:-75396098 | MS.gene059248:CDS |
AAGCGCAAGGGATATTGGCG+CGG | 0.648472 | 4.4:-75396086 | MS.gene059248:CDS |
TGCCCTTTGAACCAAACACT+CGG | 0.651926 | 4.4:+75395177 | None:intergenic |
TGAACTCAAACGACATGTTG+AGG | 0.652289 | 4.4:+75395647 | None:intergenic |
ACCTGTGAGAGGATTTCAAG+TGG | 0.654432 | 4.4:-75395155 | MS.gene059248:CDS |
ATATTGGGTTTGGAGTACAA+TGG | 0.656630 | 4.4:-75395807 | MS.gene059248:CDS |
TCTTGACCAAAATCCAAAAG+CGG | 0.665764 | 4.4:+75396339 | None:intergenic |
TTACTATCAAAGAAATGACC+CGG | 0.669847 | 4.4:+75395580 | None:intergenic |
CACGCTGGTTGTGGTGACCG+AGG | 0.670125 | 4.4:+75395281 | None:intergenic |
TGAACGCTTCGGTTCAACAA+GGG | 0.680195 | 4.4:-75396407 | MS.gene059248:CDS |
TTACCACCAACAGCAGTCGT+CGG | 0.697756 | 4.4:-75396241 | MS.gene059248:CDS |
AGAAACATGTTCCTCCATGG+AGG | 0.701239 | 4.4:+75395250 | None:intergenic |
TAATCCATCATGCTTCCCTG+TGG | 0.706732 | 4.4:-75395515 | MS.gene059248:CDS |
TGACCCGGTAGAGAACATGA+TGG | 0.712316 | 4.4:+75395595 | None:intergenic |
GTGACAAATTACCTCCATGG+AGG | 0.762900 | 4.4:-75395261 | MS.gene059248:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTAGTTTCATTTTTAAAAT+TGG | - | chr4.4:75396074-75396093 | MS.gene059248:CDS | 10.0% |
!!! | ATTTTAAAAATGAAACTAAT+CGG | + | chr4.4:75396074-75396093 | None:intergenic | 10.0% |
!!! | ATGTTATTGATTTCGATATT+GGG | - | chr4.4:75396198-75396217 | MS.gene059248:CDS | 20.0% |
! | AACAAAATCTTGCAAAATGT+TGG | - | chr4.4:75395516-75395535 | MS.gene059248:CDS | 25.0% |
! | TAAAGAAGATTATTGCTATG+TGG | - | chr4.4:75395218-75395237 | MS.gene059248:CDS | 25.0% |
! | TGAAATTCCTCAAAAGTTAA+GGG | + | chr4.4:75395096-75395115 | None:intergenic | 25.0% |
! | TTCAAATAGCAATACTTCAA+TGG | - | chr4.4:75395338-75395357 | MS.gene059248:CDS | 25.0% |
! | TTGAAATTCCTCAAAAGTTA+AGG | + | chr4.4:75395097-75395116 | None:intergenic | 25.0% |
!! | AATTGGTAAGTCTTTTCAAA+GGG | - | chr4.4:75395977-75395996 | MS.gene059248:CDS | 25.0% |
!!! | ATACTGACTCAAATTTTCTT+GGG | + | chr4.4:75396345-75396364 | None:intergenic | 25.0% |
!!! | ATCACTTTTGAGGTTAATTA+TGG | - | chr4.4:75395464-75395483 | MS.gene059248:CDS | 25.0% |
!!! | CATGTTATTGATTTCGATAT+TGG | - | chr4.4:75396197-75396216 | MS.gene059248:CDS | 25.0% |
!!! | TCACTTTTGAGGTTAATTAT+GGG | - | chr4.4:75395465-75395484 | MS.gene059248:CDS | 25.0% |
!!! | TCTCAAAATGTTGATTTTCA+TGG | - | chr4.4:75395546-75395565 | MS.gene059248:CDS | 25.0% |
!!! | TTCATTTTTTAAAGCAGCTA+AGG | - | chr4.4:75396531-75396550 | MS.gene059248:CDS | 25.0% |
AACTCATCTCAATTTCAACT+TGG | - | chr4.4:75396930-75396949 | MS.gene059248:CDS | 30.0% | |
AAGATGAAAATGGAGAACTA+GGG | + | chr4.4:75395275-75395294 | None:intergenic | 30.0% | |
AATAGTGAAGAAAAATGTGG+TGG | - | chr4.4:75395399-75395418 | MS.gene059248:CDS | 30.0% | |
ACAACAGTAATCTTAAGTGA+AGG | + | chr4.4:75396281-75396300 | None:intergenic | 30.0% | |
ATCAACCTCAACAACAAAAT+TGG | - | chr4.4:75395187-75395206 | MS.gene059248:CDS | 30.0% | |
ATGTACTCCAAAAGATTGAA+AGG | - | chr4.4:75396684-75396703 | MS.gene059248:CDS | 30.0% | |
CAGTTAATGCTTCATTCAAA+CGG | - | chr4.4:75396026-75396045 | MS.gene059248:CDS | 30.0% | |
GACAATGTTGAAGATGAAAA+TGG | + | chr4.4:75395285-75395304 | None:intergenic | 30.0% | |
GAGAATAGTGAAGAAAAATG+TGG | - | chr4.4:75395396-75395415 | MS.gene059248:CDS | 30.0% | |
GAGATTGTACTAAGAAGTAA+CGG | - | chr4.4:75396251-75396270 | MS.gene059248:CDS | 30.0% | |
TTAAAAAATGAAGAGCCACA+GGG | + | chr4.4:75396523-75396542 | None:intergenic | 30.0% | |
TTACTATCAAAGAAATGACC+CGG | + | chr4.4:75396443-75396462 | None:intergenic | 30.0% | |
TTACTTATGAAACTGGAAAC+AGG | + | chr4.4:75396488-75396507 | None:intergenic | 30.0% | |
TTTAAAAAATGAAGAGCCAC+AGG | + | chr4.4:75396524-75396543 | None:intergenic | 30.0% | |
! | ATTGATTTCGATATTGGGTT+TGG | - | chr4.4:75396203-75396222 | MS.gene059248:CDS | 30.0% |
! | ATTTTGTTCAATCCAGCAAA+AGG | + | chr4.4:75395504-75395523 | None:intergenic | 30.0% |
! | CAATTGGTAAGTCTTTTCAA+AGG | - | chr4.4:75395976-75395995 | MS.gene059248:CDS | 30.0% |
! | CTTTGAAAAGACTTACCAAT+TGG | + | chr4.4:75395978-75395997 | None:intergenic | 30.0% |
! | TGAATGAAGCATTAACTGTA+AGG | + | chr4.4:75396024-75396043 | None:intergenic | 30.0% |
! | TGTAATGCCTTTCAATCTTT+TGG | + | chr4.4:75396694-75396713 | None:intergenic | 30.0% |
! | TTTGAGGAATTTCAAGTGAA+GGG | - | chr4.4:75395102-75395121 | MS.gene059248:CDS | 30.0% |
! | TTTGATAGTAATGAAGCCAT+TGG | - | chr4.4:75396452-75396471 | MS.gene059248:CDS | 30.0% |
! | TTTTGTTCAATCCAGCAAAA+GGG | + | chr4.4:75395503-75395522 | None:intergenic | 30.0% |
!! | TGATGGATTACTTATGAAAC+TGG | + | chr4.4:75396495-75396514 | None:intergenic | 30.0% |
!! | TTTTGAGGAATTTCAAGTGA+AGG | - | chr4.4:75395101-75395120 | MS.gene059248:CDS | 30.0% |
!!! | AATGACCAATTTTGTTGTTG+AGG | + | chr4.4:75395195-75395214 | None:intergenic | 30.0% |
!!! | CAAAATGTTGATTTTCATGG+TGG | - | chr4.4:75395549-75395568 | MS.gene059248:CDS | 30.0% |
!!! | CATACTGACTCAAATTTTCT+TGG | + | chr4.4:75396346-75396365 | None:intergenic | 30.0% |
ACCATCAACAAAATCATCCT+CGG | - | chr4.4:75396722-75396741 | MS.gene059248:CDS | 35.0% | |
CATCATTTGAAAGATGAGCA+AGG | + | chr4.4:75395377-75395396 | None:intergenic | 35.0% | |
CTTCACATTAAGCAACTTCA+CGG | - | chr4.4:75396811-75396830 | MS.gene059248:CDS | 35.0% | |
CTTGAATCAAGAACTGAAGT+GGG | + | chr4.4:75395246-75395265 | None:intergenic | 35.0% | |
GAAGATGAAAATGGAGAACT+AGG | + | chr4.4:75395276-75395295 | None:intergenic | 35.0% | |
GGCTTGATTACAAGTAAAGT+TGG | + | chr4.4:75396144-75396163 | None:intergenic | 35.0% | |
GTGAAGTTGCTTAATGTGAA+GGG | + | chr4.4:75396812-75396831 | None:intergenic | 35.0% | |
TCAACATTGTCATCTTCTCA+TGG | - | chr4.4:75395294-75395313 | MS.gene059248:CDS | 35.0% | |
TCTTGAATCAAGAACTGAAG+TGG | + | chr4.4:75395247-75395266 | None:intergenic | 35.0% | |
TCTTGACCAAAATCCAAAAG+CGG | + | chr4.4:75395684-75395703 | None:intergenic | 35.0% | |
TTCAAACGGTAACAATCTCA+CGG | - | chr4.4:75396040-75396059 | MS.gene059248:CDS | 35.0% | |
TTGAAGAACATGAACGACAT+TGG | + | chr4.4:75396615-75396634 | None:intergenic | 35.0% | |
TTGCAATTCTCAGGAATGAA+TGG | + | chr4.4:75395654-75395673 | None:intergenic | 35.0% | |
! | ATATTGGGTTTGGAGTACAA+TGG | - | chr4.4:75396213-75396232 | MS.gene059248:CDS | 35.0% |
! | ATCTTGCAAAATGTTGGTTG+TGG | - | chr4.4:75395522-75395541 | MS.gene059248:CDS | 35.0% |
! | ATTTCAAGTGAAGGGAATGT+TGG | - | chr4.4:75395110-75395129 | MS.gene059248:CDS | 35.0% |
! | TCATGATGATGAGGAAACAA+TGG | + | chr4.4:75395747-75395766 | None:intergenic | 35.0% |
!! | GTCAAGATCAATCACTTTTG+AGG | - | chr4.4:75395454-75395473 | MS.gene059248:CDS | 35.0% |
!! | GTTGATTTTCATGGTGGTTT+TGG | - | chr4.4:75395555-75395574 | MS.gene059248:CDS | 35.0% |
!!! | AGGATGATTTTGTTGATGGT+TGG | + | chr4.4:75396722-75396741 | None:intergenic | 35.0% |
!!! | TGATTTTGTTGATGGTTGGT+TGG | + | chr4.4:75396718-75396737 | None:intergenic | 35.0% |
AACAGGAAAGTTCACACCAA+TGG | + | chr4.4:75396471-75396490 | None:intergenic | 40.0% | |
AACAGGTGATATCTCGGAAA+AGG | + | chr4.4:75396111-75396130 | None:intergenic | 40.0% | |
AAGAACATGAACGACATTGG+TGG | + | chr4.4:75396612-75396631 | None:intergenic | 40.0% | |
AAGGGCTTCTTTCTACATGA+AGG | - | chr4.4:75395995-75396014 | MS.gene059248:CDS | 40.0% | |
AAGTTGGCAAACTGAAGAAC+AGG | + | chr4.4:75396128-75396147 | None:intergenic | 40.0% | |
AGAACATGAACGACATTGGT+GGG | + | chr4.4:75396611-75396630 | None:intergenic | 40.0% | |
AGAGTTGAACATGAACGCTT+CGG | - | chr4.4:75395602-75395621 | MS.gene059248:CDS | 40.0% | |
AGGAACATGTTTCTTCAGTC+CGG | - | chr4.4:75396779-75396798 | MS.gene059248:CDS | 40.0% | |
AGTGAAGAAAAATGTGGTGG+TGG | - | chr4.4:75395402-75395421 | MS.gene059248:CDS | 40.0% | |
CAAATATACTCTGCTGAAGC+TGG | + | chr4.4:75395866-75395885 | None:intergenic | 40.0% | |
CGTGAAGTTGCTTAATGTGA+AGG | + | chr4.4:75396813-75396832 | None:intergenic | 40.0% | |
CTGAAGAACAGGTGATATCT+CGG | + | chr4.4:75396117-75396136 | None:intergenic | 40.0% | |
GGTAACACATTGCAATTCTC+AGG | + | chr4.4:75395663-75395682 | None:intergenic | 40.0% | |
TAATGTGAAGGGAGAGAAAC+CGG | + | chr4.4:75396801-75396820 | None:intergenic | 40.0% | |
TCCAAAGTTACGACCACTTT+CGG | + | chr4.4:75396557-75396576 | None:intergenic | 40.0% | |
TGAACTCAAACGACATGTTG+AGG | + | chr4.4:75396376-75396395 | None:intergenic | 40.0% | |
TGAAGAAACATGTTCCTCCA+TGG | + | chr4.4:75396776-75396795 | None:intergenic | 40.0% | |
TGGTATGAGAATGGAGGATT+GGG | - | chr4.4:75395428-75395447 | MS.gene059248:CDS | 40.0% | |
TTGTCATCTTCTCATGGTAG+TGG | - | chr4.4:75395300-75395319 | MS.gene059248:CDS | 40.0% | |
! | AAGGTGAGTTCTAGTACTAC+CGG | - | chr4.4:75395825-75395844 | MS.gene059248:CDS | 40.0% |
! | ACCGAGGATGATTTTGTTGA+TGG | + | chr4.4:75396726-75396745 | None:intergenic | 40.0% |
! | GGTAGTGGTAGTAATGGTAA+TGG | - | chr4.4:75395315-75395334 | MS.gene059248:CDS | 40.0% |
! | TTGCAATGTGTTACCGCTTT+TGG | - | chr4.4:75395668-75395687 | MS.gene059248:CDS | 40.0% |
!! | GTGTTACCGCTTTTGGATTT+TGG | - | chr4.4:75395675-75395694 | MS.gene059248:CDS | 40.0% |
!! | TCTCATGGTAGTGGTAGTAA+TGG | - | chr4.4:75395309-75395328 | MS.gene059248:CDS | 40.0% |
!! | TTGGTCAAGAAGTGTTTGCT+AGG | - | chr4.4:75395694-75395713 | MS.gene059248:CDS | 40.0% |
!!! | CAATCTTTTGGAGTACATCG+AGG | + | chr4.4:75396682-75396701 | None:intergenic | 40.0% |
!!! | TCATGGTGGTTTTGGTGTTT+TGG | - | chr4.4:75395563-75395582 | MS.gene059248:CDS | 40.0% |
AATATCCCTTGCGCTTGAAC+CGG | + | chr4.4:75395930-75395949 | None:intergenic | 45.0% | |
AATCACCAGCTCTCACCAAT+TGG | - | chr4.4:75395960-75395979 | MS.gene059248:CDS | 45.0% | |
AATTCGATCGAACCTCTCCA+AGG | + | chr4.4:75396177-75396196 | None:intergenic | 45.0% | |
ACCTGTGAGAGGATTTCAAG+TGG | - | chr4.4:75396865-75396884 | MS.gene059248:CDS | 45.0% | |
ACTTACCAATTGGTGAGAGC+TGG | + | chr4.4:75395968-75395987 | None:intergenic | 45.0% | |
AGAAACATGTTCCTCCATGG+AGG | + | chr4.4:75396773-75396792 | None:intergenic | 45.0% | |
AGCGTGACAAATTACCTCCA+TGG | - | chr4.4:75396756-75396775 | MS.gene059248:CDS | 45.0% | |
ATGAACGCTTCGGTTCAACA+AGG | - | chr4.4:75395612-75395631 | MS.gene059248:CDS | 45.0% | |
ATGAGAATGGAGGATTGGGA+AGG | - | chr4.4:75395432-75395451 | MS.gene059248:CDS | 45.0% | |
CTTGCCATCATGTTCTCTAC+CGG | - | chr4.4:75396421-75396440 | MS.gene059248:CDS | 45.0% | |
GCTGATAGAAGCTGGTAATC+CGG | - | chr4.4:75395908-75395927 | MS.gene059248:CDS | 45.0% | |
GGACAAAAACTGTGACCGAA+TGG | - | chr4.4:75396574-75396593 | MS.gene059248:CDS | 45.0% | |
GTGACAAATTACCTCCATGG+AGG | - | chr4.4:75396759-75396778 | MS.gene059248:CDS | 45.0% | |
GTGGTATGAGAATGGAGGAT+TGG | - | chr4.4:75395427-75395446 | MS.gene059248:CDS | 45.0% | |
TAATCCATCATGCTTCCCTG+TGG | - | chr4.4:75396505-75396524 | MS.gene059248:CDS | 45.0% | |
TCAATCTCGTTGCAAGACGA+GGG | + | chr4.4:75396311-75396330 | None:intergenic | 45.0% | |
TCCAATTGCGAAGCAGCAAA+AGG | - | chr4.4:75395806-75395825 | MS.gene059248:CDS | 45.0% | |
TCCACTTGAAATCCTCTCAC+AGG | + | chr4.4:75396869-75396888 | None:intergenic | 45.0% | |
TGAACGCTTCGGTTCAACAA+GGG | - | chr4.4:75395613-75395632 | MS.gene059248:CDS | 45.0% | |
TGCCCTTTGAACCAAACACT+CGG | + | chr4.4:75396846-75396865 | None:intergenic | 45.0% | |
TGGGAAGAGGAACATCCATT+CGG | + | chr4.4:75396592-75396611 | None:intergenic | 45.0% | |
TTCAATCTCGTTGCAAGACG+AGG | + | chr4.4:75396312-75396331 | None:intergenic | 45.0% | |
TTGCCATCATGTTCTCTACC+GGG | - | chr4.4:75396422-75396441 | MS.gene059248:CDS | 45.0% | |
! | AAGCCGAGTGTTTGGTTCAA+AGG | - | chr4.4:75396840-75396859 | MS.gene059248:CDS | 45.0% |
! | AGCCGAGTGTTTGGTTCAAA+GGG | - | chr4.4:75396841-75396860 | MS.gene059248:CDS | 45.0% |
! | ATGGAGGTAATTTGTCACGC+TGG | + | chr4.4:75396757-75396776 | None:intergenic | 45.0% |
! | GATGTTGAAGACCCTTTTGC+TGG | - | chr4.4:75395489-75395508 | MS.gene059248:CDS | 45.0% |
! | GGCTTTGCCCTTAACTTTTG+AGG | - | chr4.4:75395086-75395105 | MS.gene059248:CDS | 45.0% |
! | GTAATTTGTCACGCTGGTTG+TGG | + | chr4.4:75396751-75396770 | None:intergenic | 45.0% |
!! | ACCTTTTGCTGCTTCGCAAT+TGG | + | chr4.4:75395810-75395829 | None:intergenic | 45.0% |
!! | GAAGAAAAATGTGGTGGTGG+TGG | - | chr4.4:75395405-75395424 | MS.gene059248:CDS | 45.0% |
AAAGCAGCTAAGGCCGAAAG+TGG | - | chr4.4:75396541-75396560 | MS.gene059248:CDS | 50.0% | |
ACCTCTCCAAGGCTTCAATG+AGG | + | chr4.4:75396166-75396185 | None:intergenic | 50.0% | |
ACTGCTGAGCTGATAGAAGC+TGG | - | chr4.4:75395900-75395919 | MS.gene059248:CDS | 50.0% | |
CAGCATAGCACAAGAGTGGA+AGG | + | chr4.4:75396899-75396918 | None:intergenic | 50.0% | |
CCTCTCCAAGGCTTCAATGA+GGG | + | chr4.4:75396165-75396184 | None:intergenic | 50.0% | |
CTGGATGCTTGCATCATCTC+CGG | + | chr4.4:75395847-75395866 | None:intergenic | 50.0% | |
CTTCCACTCTTGTGCTATGC+TGG | - | chr4.4:75396897-75396916 | MS.gene059248:CDS | 50.0% | |
GCCGAAAGTGGTCGTAACTT+TGG | - | chr4.4:75396553-75396572 | MS.gene059248:CDS | 50.0% | |
GGTTCAAGCGCAAGGGATAT+TGG | - | chr4.4:75395929-75395948 | MS.gene059248:CDS | 50.0% | |
GTAATCCGGTTCAAGCGCAA+GGG | - | chr4.4:75395922-75395941 | MS.gene059248:CDS | 50.0% | |
TCAAGCCCTCATTGAAGCCT+TGG | - | chr4.4:75396157-75396176 | MS.gene059248:CDS | 50.0% | |
TGAACGACATTGGTGGGAAG+AGG | + | chr4.4:75396605-75396624 | None:intergenic | 50.0% | |
TGACCCGGTAGAGAACATGA+TGG | + | chr4.4:75396428-75396447 | None:intergenic | 50.0% | |
TTACCACCAACAGCAGTCGT+CGG | - | chr4.4:75395779-75395798 | MS.gene059248:CDS | 50.0% | |
! | TGCTGCAGCTCATGATGATG+AGG | + | chr4.4:75395756-75395775 | None:intergenic | 50.0% |
!! | GAAAAATGTGGTGGTGGTGG+TGG | - | chr4.4:75395408-75395427 | MS.gene059248:CDS | 50.0% |
!! | TGGTGGTGGTATGAGAATGG+AGG | - | chr4.4:75395422-75395441 | MS.gene059248:CDS | 50.0% |
!! | TGGTGGTGGTGGTATGAGAA+TGG | - | chr4.4:75395419-75395438 | MS.gene059248:CDS | 50.0% |
AAGCGCAAGGGATATTGGCG+CGG | - | chr4.4:75395934-75395953 | MS.gene059248:CDS | 55.0% | |
CCCTCATTGAAGCCTTGGAG+AGG | - | chr4.4:75396162-75396181 | MS.gene059248:CDS | 55.0% | |
CTCTTGTGCTATGCTGGCAG+AGG | - | chr4.4:75396903-75396922 | MS.gene059248:CDS | 55.0% | |
CTGCCAGCATAGCACAAGAG+TGG | + | chr4.4:75396903-75396922 | None:intergenic | 55.0% | |
GAACAACCGACGACTGCTGT+TGG | + | chr4.4:75395788-75395807 | None:intergenic | 55.0% | |
GGAAGCTCAAGCCGAGTGTT+TGG | - | chr4.4:75396832-75396851 | MS.gene059248:CDS | 55.0% | |
GGTAATCCGGTTCAAGCGCA+AGG | - | chr4.4:75395921-75395940 | MS.gene059248:CDS | 55.0% | |
TGCTAGGAGACATCAGCAGC+AGG | - | chr4.4:75395710-75395729 | MS.gene059248:CDS | 55.0% | |
! | AGAGCCACAGGGAAGCATGA+TGG | + | chr4.4:75396512-75396531 | None:intergenic | 55.0% |
!! | GTTCAAAGGGCACCTGTGAG+AGG | - | chr4.4:75396854-75396873 | MS.gene059248:CDS | 55.0% |
CAACCGACGACTGCTGTTGG+TGG | + | chr4.4:75395785-75395804 | None:intergenic | 60.0% | |
! | CACGCTGGTTGTGGTGACCG+AGG | + | chr4.4:75396742-75396761 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 75395081 | 75396961 | 75395081 | ID=MS.gene059248 |
chr4.4 | mRNA | 75395081 | 75396961 | 75395081 | ID=MS.gene059248.t1;Parent=MS.gene059248 |
chr4.4 | exon | 75395081 | 75396961 | 75395081 | ID=MS.gene059248.t1.exon1;Parent=MS.gene059248.t1 |
chr4.4 | CDS | 75395081 | 75396961 | 75395081 | ID=cds.MS.gene059248.t1;Parent=MS.gene059248.t1 |
Gene Sequence |
Protein sequence |