Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96563.t1 | XP_003622929.1 | 92.7 | 784 | 54 | 1 | 1 | 781 | 1 | 784 | 0.00E+00 | 1219.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96563.t1 | O48847 | 55.9 | 790 | 328 | 13 | 8 | 781 | 2 | 787 | 8.8e-206 | 718.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96563.t1 | G7L191 | 92.7 | 784 | 54 | 1 | 1 | 781 | 1 | 784 | 0.0e+00 | 1219.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene96563.t1 | TR | LUG |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene96563 | 0.802892 | 4.52E-49 | -1.69E-46 |
MS.gene051198 | MS.gene96563 | 0.802265 | 6.09E-49 | -1.69E-46 |
MS.gene053079 | MS.gene96563 | 0.825001 | 5.95E-54 | -1.69E-46 |
MS.gene054641 | MS.gene96563 | 0.819448 | 1.16E-52 | -1.69E-46 |
MS.gene054651 | MS.gene96563 | 0.803065 | 4.16E-49 | -1.69E-46 |
MS.gene054991 | MS.gene96563 | 0.81008 | 1.38E-50 | -1.69E-46 |
MS.gene055513 | MS.gene96563 | 0.807826 | 4.18E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96563.t1 | MTR_7g058460 | 94.515 | 784 | 40 | 1 | 1 | 781 | 1 | 784 | 0.0 | 1471 |
MS.gene96563.t1 | MTR_7g058440 | 90.434 | 784 | 63 | 2 | 1 | 781 | 1 | 775 | 0.0 | 1397 |
MS.gene96563.t1 | MTR_1g050340 | 62.056 | 788 | 282 | 12 | 8 | 781 | 2 | 786 | 0.0 | 935 |
MS.gene96563.t1 | MTR_1g050340 | 61.850 | 789 | 283 | 12 | 8 | 781 | 2 | 787 | 0.0 | 931 |
MS.gene96563.t1 | MTR_1g011610 | 42.734 | 929 | 340 | 26 | 8 | 781 | 2 | 893 | 0.0 | 595 |
MS.gene96563.t1 | MTR_1g011610 | 42.156 | 937 | 343 | 27 | 8 | 781 | 2 | 902 | 0.0 | 587 |
MS.gene96563.t1 | MTR_3g107910 | 40.665 | 782 | 311 | 25 | 114 | 781 | 155 | 897 | 2.78e-155 | 475 |
MS.gene96563.t1 | MTR_3g107910 | 40.177 | 789 | 312 | 25 | 114 | 781 | 155 | 904 | 1.03e-152 | 469 |
MS.gene96563.t1 | MTR_4g113080 | 33.375 | 806 | 436 | 26 | 18 | 781 | 35 | 781 | 2.74e-121 | 383 |
MS.gene96563.t1 | MTR_2g014020 | 42.655 | 354 | 193 | 6 | 434 | 781 | 175 | 524 | 2.14e-92 | 299 |
MS.gene96563.t1 | MTR_4g088620 | 35.484 | 279 | 177 | 3 | 505 | 781 | 31 | 308 | 4.52e-56 | 195 |
MS.gene96563.t1 | MTR_2g014020 | 41.423 | 239 | 134 | 4 | 434 | 668 | 175 | 411 | 6.67e-55 | 195 |
MS.gene96563.t1 | MTR_4g088640 | 38.542 | 288 | 170 | 5 | 497 | 781 | 100 | 383 | 1.53e-53 | 190 |
MS.gene96563.t1 | MTR_4g088625 | 37.906 | 277 | 163 | 6 | 509 | 781 | 28 | 299 | 6.10e-52 | 183 |
MS.gene96563.t1 | MTR_4g088665 | 35.587 | 281 | 173 | 5 | 507 | 781 | 104 | 382 | 3.53e-50 | 181 |
MS.gene96563.t1 | MTR_4g088635 | 36.364 | 286 | 168 | 6 | 507 | 781 | 101 | 383 | 1.66e-49 | 179 |
MS.gene96563.t1 | MTR_4g088660 | 35.507 | 276 | 175 | 3 | 507 | 781 | 208 | 481 | 1.58e-48 | 179 |
MS.gene96563.t1 | MTR_4g088670 | 36.029 | 272 | 156 | 5 | 509 | 775 | 31 | 289 | 3.66e-46 | 167 |
MS.gene96563.t1 | MTR_4g088675 | 31.535 | 241 | 120 | 6 | 545 | 781 | 21 | 220 | 1.20e-31 | 123 |
MS.gene96563.t1 | MTR_1g072140 | 25.407 | 307 | 171 | 9 | 482 | 780 | 12 | 268 | 1.09e-19 | 91.3 |
MS.gene96563.t1 | MTR_5g022690 | 23.948 | 309 | 204 | 9 | 497 | 780 | 173 | 475 | 2.71e-19 | 92.4 |
MS.gene96563.t1 | MTR_4g119620 | 24.658 | 292 | 164 | 8 | 504 | 780 | 27 | 277 | 1.19e-17 | 85.5 |
MS.gene96563.t1 | MTR_4g119620 | 22.634 | 243 | 176 | 6 | 507 | 739 | 81 | 321 | 1.74e-11 | 66.6 |
MS.gene96563.t1 | MTR_3g045130 | 25.694 | 288 | 168 | 6 | 497 | 780 | 265 | 510 | 7.37e-17 | 85.1 |
MS.gene96563.t1 | MTR_4g095058 | 25.984 | 254 | 167 | 9 | 507 | 745 | 292 | 539 | 9.93e-16 | 81.6 |
MS.gene96563.t1 | MTR_4g095058 | 25.984 | 254 | 167 | 9 | 507 | 745 | 290 | 537 | 1.23e-15 | 81.3 |
MS.gene96563.t1 | MTR_8g038550 | 19.079 | 304 | 235 | 8 | 485 | 780 | 164 | 464 | 6.30e-14 | 76.3 |
MS.gene96563.t1 | MTR_6g004040 | 25.000 | 216 | 156 | 4 | 517 | 728 | 30 | 243 | 7.59e-14 | 75.9 |
MS.gene96563.t1 | MTR_1g090827 | 23.162 | 272 | 173 | 7 | 507 | 745 | 54 | 322 | 4.43e-13 | 73.6 |
MS.gene96563.t1 | MTR_4g071130 | 22.059 | 272 | 176 | 8 | 507 | 745 | 54 | 322 | 9.36e-13 | 72.8 |
MS.gene96563.t1 | MTR_8g092620 | 21.631 | 282 | 210 | 7 | 507 | 781 | 21 | 298 | 1.15e-12 | 70.1 |
MS.gene96563.t1 | MTR_1g044720 | 26.203 | 187 | 132 | 4 | 518 | 699 | 236 | 421 | 1.93e-12 | 70.9 |
MS.gene96563.t1 | MTR_2g102277 | 23.923 | 209 | 153 | 3 | 507 | 709 | 60 | 268 | 4.51e-12 | 70.5 |
MS.gene96563.t1 | MTR_2g102277 | 23.923 | 209 | 153 | 3 | 507 | 709 | 60 | 268 | 4.90e-12 | 70.1 |
MS.gene96563.t1 | MTR_4g011950 | 23.923 | 209 | 153 | 3 | 507 | 709 | 60 | 268 | 6.27e-12 | 69.7 |
MS.gene96563.t1 | MTR_2g012630 | 23.611 | 216 | 159 | 4 | 517 | 728 | 29 | 242 | 1.50e-11 | 68.6 |
MS.gene96563.t1 | MTR_2g012630 | 23.611 | 216 | 159 | 4 | 517 | 728 | 29 | 242 | 1.56e-11 | 68.6 |
MS.gene96563.t1 | MTR_3g106080 | 27.746 | 173 | 119 | 4 | 496 | 664 | 452 | 622 | 1.59e-11 | 68.2 |
MS.gene96563.t1 | MTR_4g105700 | 20.070 | 284 | 208 | 5 | 515 | 780 | 371 | 653 | 2.25e-11 | 68.2 |
MS.gene96563.t1 | MTR_5g016350 | 21.429 | 252 | 181 | 6 | 507 | 745 | 297 | 544 | 5.79e-11 | 66.2 |
MS.gene96563.t1 | MTR_5g016350 | 21.429 | 252 | 181 | 6 | 507 | 745 | 233 | 480 | 6.12e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96563.t1 | AT2G32700 | 59.264 | 788 | 303 | 13 | 8 | 781 | 2 | 785 | 0.0 | 899 |
MS.gene96563.t1 | AT2G32700 | 59.114 | 790 | 303 | 14 | 8 | 781 | 2 | 787 | 0.0 | 894 |
MS.gene96563.t1 | AT2G32700 | 59.114 | 790 | 303 | 14 | 8 | 781 | 2 | 787 | 0.0 | 894 |
MS.gene96563.t1 | AT2G32700 | 59.114 | 790 | 303 | 14 | 8 | 781 | 2 | 787 | 0.0 | 894 |
MS.gene96563.t1 | AT2G32700 | 59.114 | 790 | 303 | 14 | 8 | 781 | 2 | 787 | 0.0 | 894 |
MS.gene96563.t1 | AT2G32700 | 59.114 | 790 | 303 | 14 | 8 | 781 | 2 | 787 | 0.0 | 894 |
MS.gene96563.t1 | AT2G32700 | 57.726 | 809 | 303 | 15 | 8 | 781 | 2 | 806 | 0.0 | 882 |
MS.gene96563.t1 | AT4G32551 | 52.027 | 444 | 196 | 6 | 346 | 781 | 497 | 931 | 1.70e-140 | 437 |
MS.gene96563.t1 | AT4G32551 | 77.011 | 87 | 20 | 0 | 8 | 94 | 2 | 88 | 2.04e-38 | 154 |
MS.gene96563.t1 | AT4G32551 | 38.115 | 244 | 106 | 13 | 113 | 330 | 185 | 409 | 3.09e-18 | 90.5 |
MS.gene96563.t1 | AT4G32551 | 52.027 | 444 | 196 | 6 | 346 | 781 | 535 | 969 | 4.14e-140 | 437 |
MS.gene96563.t1 | AT4G32551 | 77.011 | 87 | 20 | 0 | 8 | 94 | 2 | 88 | 2.56e-38 | 154 |
MS.gene96563.t1 | AT4G32551 | 35.793 | 271 | 113 | 15 | 113 | 330 | 185 | 447 | 9.84e-16 | 82.4 |
MS.gene96563.t1 | AT4G02730 | 24.691 | 324 | 180 | 8 | 465 | 780 | 18 | 285 | 1.23e-21 | 97.4 |
MS.gene96563.t1 | AT2G41500 | 25.267 | 281 | 200 | 7 | 507 | 780 | 258 | 535 | 9.69e-20 | 94.4 |
MS.gene96563.t1 | AT2G41500 | 25.267 | 281 | 200 | 7 | 507 | 780 | 258 | 535 | 9.69e-20 | 94.4 |
MS.gene96563.t1 | AT3G49660 | 26.736 | 288 | 155 | 9 | 507 | 781 | 27 | 271 | 1.12e-19 | 91.3 |
MS.gene96563.t1 | AT5G13480 | 22.368 | 304 | 225 | 9 | 485 | 780 | 104 | 404 | 7.36e-18 | 88.6 |
MS.gene96563.t1 | AT5G13480 | 22.789 | 294 | 216 | 9 | 495 | 780 | 102 | 392 | 9.23e-18 | 88.2 |
MS.gene96563.t1 | AT5G13480 | 22.368 | 304 | 225 | 9 | 485 | 780 | 92 | 392 | 1.07e-17 | 88.2 |
MS.gene96563.t1 | AT5G13480 | 22.789 | 294 | 216 | 9 | 495 | 780 | 125 | 415 | 1.40e-17 | 87.8 |
MS.gene96563.t1 | AT1G11160 | 22.685 | 216 | 161 | 4 | 517 | 728 | 29 | 242 | 1.74e-13 | 75.1 |
MS.gene96563.t1 | AT1G61210 | 23.077 | 273 | 193 | 9 | 517 | 780 | 29 | 293 | 1.81e-13 | 75.1 |
MS.gene96563.t1 | AT1G11160 | 22.685 | 216 | 161 | 4 | 517 | 728 | 29 | 242 | 2.00e-13 | 74.7 |
MS.gene96563.t1 | AT1G11160 | 22.685 | 216 | 161 | 4 | 517 | 728 | 29 | 242 | 2.10e-13 | 74.7 |
MS.gene96563.t1 | AT5G25150 | 27.885 | 208 | 136 | 6 | 469 | 664 | 416 | 621 | 2.19e-13 | 74.3 |
MS.gene96563.t1 | AT5G25150 | 27.885 | 208 | 136 | 6 | 469 | 664 | 416 | 621 | 2.87e-13 | 73.9 |
MS.gene96563.t1 | AT1G61210 | 23.077 | 273 | 193 | 9 | 517 | 780 | 29 | 293 | 2.90e-13 | 74.3 |
MS.gene96563.t1 | AT1G61210 | 23.246 | 228 | 168 | 5 | 517 | 740 | 29 | 253 | 3.38e-13 | 74.3 |
MS.gene96563.t1 | AT1G62020 | 22.059 | 272 | 176 | 7 | 507 | 745 | 54 | 322 | 4.37e-13 | 73.9 |
MS.gene96563.t1 | AT2G21390 | 21.324 | 272 | 178 | 8 | 507 | 745 | 54 | 322 | 5.37e-13 | 73.6 |
MS.gene96563.t1 | AT5G08390 | 24.352 | 193 | 140 | 4 | 517 | 705 | 30 | 220 | 8.86e-13 | 72.8 |
MS.gene96563.t1 | AT5G23430 | 24.242 | 231 | 160 | 7 | 517 | 739 | 30 | 253 | 1.33e-12 | 72.0 |
MS.gene96563.t1 | AT5G23430 | 24.242 | 231 | 160 | 7 | 517 | 739 | 30 | 253 | 1.33e-12 | 72.0 |
MS.gene96563.t1 | AT5G23430 | 24.242 | 231 | 160 | 7 | 517 | 739 | 30 | 253 | 1.36e-12 | 72.0 |
MS.gene96563.t1 | AT5G16750 | 21.631 | 282 | 202 | 5 | 517 | 780 | 372 | 652 | 2.01e-12 | 71.6 |
MS.gene96563.t1 | AT1G52360 | 23.923 | 209 | 153 | 3 | 507 | 709 | 60 | 268 | 2.01e-12 | 71.6 |
MS.gene96563.t1 | AT1G52360 | 23.923 | 209 | 153 | 3 | 507 | 709 | 60 | 268 | 2.01e-12 | 71.6 |
MS.gene96563.t1 | AT2G33340 | 25.391 | 256 | 174 | 8 | 518 | 766 | 236 | 481 | 2.03e-12 | 70.9 |
MS.gene96563.t1 | AT2G33340 | 25.391 | 256 | 174 | 8 | 518 | 766 | 236 | 481 | 2.03e-12 | 70.9 |
MS.gene96563.t1 | AT1G52360 | 23.923 | 209 | 153 | 3 | 507 | 709 | 60 | 268 | 2.44e-12 | 71.2 |
MS.gene96563.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 507 | 709 | 60 | 268 | 2.52e-12 | 71.2 |
MS.gene96563.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 507 | 709 | 60 | 268 | 2.52e-12 | 71.2 |
MS.gene96563.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 507 | 709 | 60 | 268 | 2.52e-12 | 71.2 |
MS.gene96563.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 507 | 709 | 60 | 268 | 2.52e-12 | 71.2 |
MS.gene96563.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 507 | 709 | 60 | 268 | 2.81e-12 | 71.2 |
MS.gene96563.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 507 | 709 | 60 | 268 | 3.03e-12 | 70.9 |
MS.gene96563.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 507 | 709 | 60 | 268 | 3.07e-12 | 70.9 |
MS.gene96563.t1 | AT2G33340 | 25.391 | 256 | 174 | 8 | 518 | 766 | 236 | 481 | 3.28e-12 | 70.1 |
MS.gene96563.t1 | AT5G67320 | 23.962 | 313 | 187 | 9 | 507 | 780 | 268 | 568 | 3.39e-12 | 70.5 |
MS.gene96563.t1 | AT1G52360 | 23.923 | 209 | 153 | 3 | 507 | 709 | 104 | 312 | 4.21e-12 | 70.5 |
MS.gene96563.t1 | AT5G43920 | 22.507 | 351 | 228 | 16 | 455 | 780 | 182 | 513 | 5.99e-12 | 69.3 |
MS.gene96563.t1 | AT1G71840 | 25.357 | 280 | 191 | 11 | 514 | 780 | 81 | 355 | 2.23e-11 | 67.0 |
MS.gene96563.t1 | AT1G79990 | 23.445 | 209 | 154 | 3 | 507 | 709 | 60 | 268 | 8.27e-11 | 66.2 |
MS.gene96563.t1 | AT5G60940 | 23.043 | 230 | 148 | 10 | 541 | 745 | 118 | 343 | 9.21e-11 | 65.5 |
MS.gene96563.t1 | AT1G79990 | 23.445 | 209 | 154 | 3 | 507 | 709 | 60 | 268 | 9.53e-11 | 66.2 |
Find 177 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCATATCTTCACCAAATT+TGG | 0.073622 | 7.3:-46324475 | None:intergenic |
ATGGATCCACGTAGACTTTC+TGG | 0.180048 | 7.3:+46320861 | MS.gene96563:CDS |
TTGAGTGGTGGTCCGTCTTT+TGG | 0.188375 | 7.3:+46318863 | MS.gene96563:CDS |
GGCATCTATTAGTCCAAATT+TGG | 0.206338 | 7.3:+46324462 | MS.gene96563:CDS |
AGCCTTGGAAATTCTAATTA+TGG | 0.228558 | 7.3:+46320834 | MS.gene96563:CDS |
CAGTTGGTCCATGGTAATTC+AGG | 0.252220 | 7.3:+46319727 | MS.gene96563:CDS |
AGGAAGCAAGCTTCTTCTTC+TGG | 0.267297 | 7.3:+46322101 | MS.gene96563:CDS |
ATAACTAATTTGTGTTCTTC+AGG | 0.271953 | 7.3:-46323556 | None:intergenic |
GAATCCATGGGAAAATTCTT+TGG | 0.279765 | 7.3:-46319949 | None:intergenic |
TGGGTCAAGCTCAAACTAAC+TGG | 0.285491 | 7.3:+46318350 | MS.gene96563:CDS |
GTTCTCTGGCCTTCGTCTGC+TGG | 0.286432 | 7.3:-46319335 | None:intergenic |
CAAATATTGTTCAACGGTTC+AGG | 0.287072 | 7.3:-46324415 | None:intergenic |
GTTGCCAACTGAGATGAATT+TGG | 0.300359 | 7.3:-46323598 | None:intergenic |
GTCATCAGAGTAACAGAAAA+AGG | 0.305770 | 7.3:+46322081 | MS.gene96563:intron |
GTCCAAATTTGGTGAAGATA+TGG | 0.313890 | 7.3:+46324473 | MS.gene96563:CDS |
ACATTTCAACTCACAGTTAG+AGG | 0.314147 | 7.3:-46320612 | None:intergenic |
AAATTCTAATTATGGTGATA+TGG | 0.317057 | 7.3:+46320842 | MS.gene96563:CDS |
TGATCAACTAAGACCTGGTT+TGG | 0.320891 | 7.3:+46320713 | MS.gene96563:CDS |
CTATTTGCATCAATAAGATT+TGG | 0.330561 | 7.3:-46319561 | None:intergenic |
CTGCATTTGAAGCTGTTCTC+TGG | 0.336521 | 7.3:-46319349 | None:intergenic |
TCAGGTTGTCCTGTGGAATA+TGG | 0.337781 | 7.3:+46323510 | MS.gene96563:intron |
TCGATTCTACAATCGAAATC+TGG | 0.345323 | 7.3:+46319988 | MS.gene96563:CDS |
TTCATGGCCAATGCACTTGC+TGG | 0.354921 | 7.3:-46319486 | None:intergenic |
CCATGGATTCGTCAGTTTAT+CGG | 0.359532 | 7.3:+46319962 | MS.gene96563:CDS |
CCACCCAGTCCAGGATGATT+AGG | 0.373675 | 7.3:-46319420 | None:intergenic |
AACCGTTGAACAATATTTGC+TGG | 0.378270 | 7.3:+46324419 | MS.gene96563:CDS |
CAGGATGATATAGATCGATT+TGG | 0.381220 | 7.3:+46322609 | MS.gene96563:intron |
CAACATACCTTCAGAGTTCA+TGG | 0.387665 | 7.3:-46319454 | None:intergenic |
GTGACAAATCTGTGCGGTTA+TGG | 0.388414 | 7.3:+46323629 | MS.gene96563:CDS |
GGAGATGCTGGCAATCTCTA+TGG | 0.392177 | 7.3:+46322684 | MS.gene96563:CDS |
CAAAGGATGGTCAATCTAAC+AGG | 0.400484 | 7.3:+46320907 | MS.gene96563:CDS |
AGCCATGTTCCACAGCTCTA+AGG | 0.401681 | 7.3:-46325194 | None:intergenic |
GTCACTATGAAGCCAACTTT+GGG | 0.402140 | 7.3:+46318331 | None:intergenic |
TTCTCTGGCCTTCGTCTGCT+GGG | 0.402566 | 7.3:-46319334 | None:intergenic |
GCTATATTCTTGAACACAAT+AGG | 0.403277 | 7.3:-46323805 | None:intergenic |
CAGTGCTGGAGAAGACAAAA+AGG | 0.412474 | 7.3:+46322918 | MS.gene96563:CDS |
TGTCACTATGAAGCCAACTT+TGG | 0.413489 | 7.3:+46318330 | None:intergenic |
ATGAACTCTGAAGGTATGTT+GGG | 0.414053 | 7.3:+46319456 | MS.gene96563:CDS |
GTTTCCAGTACCAGTGCTAT+TGG | 0.416797 | 7.3:-46322129 | None:intergenic |
GTTCAGGAGCTCAACTCTAC+TGG | 0.418673 | 7.3:+46324517 | MS.gene96563:CDS |
TTGGCTGAGTGTGCTGCTAC+TGG | 0.422243 | 7.3:+46325265 | MS.gene96563:CDS |
CTCGTGTACCCGTGTATCTA+AGG | 0.424307 | 7.3:+46323935 | MS.gene96563:CDS |
ATTTCCTACCAAATGCAATC+AGG | 0.425797 | 7.3:+46320942 | MS.gene96563:CDS |
TGTGTCGATGATGGTGAATT+AGG | 0.429565 | 7.3:-46322167 | None:intergenic |
TAGGTGAACCTGATTGCATT+TGG | 0.433277 | 7.3:-46320950 | None:intergenic |
GCAGAAGCAACTGGAGGACT+TGG | 0.435271 | 7.3:+46322269 | MS.gene96563:CDS |
GCAATTAACTGTCCCGATCC+AGG | 0.435600 | 7.3:-46324065 | None:intergenic |
GACCTCAGGAGAATGCGTTC+AGG | 0.436546 | 7.3:+46324501 | MS.gene96563:CDS |
ACAGGTCTTGGCACAGGCTC+TGG | 0.440258 | 7.3:+46320800 | MS.gene96563:CDS |
TCCTGCATCATTTGATAGAA+AGG | 0.441149 | 7.3:-46322664 | None:intergenic |
AATGAAACACCCTCATTCAA+TGG | 0.448834 | 7.3:+46319524 | MS.gene96563:CDS |
ACTAATAAAGTTGCATAGCT+TGG | 0.449679 | 7.3:-46324568 | None:intergenic |
TGTCTTTCAGGATTAAATCA+AGG | 0.450668 | 7.3:+46320561 | MS.gene96563:intron |
TCTTCTTAGGGTGGAAATCA+AGG | 0.451351 | 7.3:-46323851 | None:intergenic |
GTTGTGATGCCAAGATATAT+TGG | 0.453649 | 7.3:-46320773 | None:intergenic |
AATGCAAAACCAATATATCT+TGG | 0.454307 | 7.3:+46320764 | MS.gene96563:CDS |
GGAAAGTTGCTTGCCAGTGC+TGG | 0.454974 | 7.3:+46322904 | MS.gene96563:CDS |
CCGATAAACTGACGAATCCA+TGG | 0.456114 | 7.3:-46319962 | None:intergenic |
GTGGAAATCAAGGGACATAA+TGG | 0.456387 | 7.3:-46323841 | None:intergenic |
TGACAAATCTGTGCGGTTAT+GGG | 0.458834 | 7.3:+46323630 | MS.gene96563:CDS |
GAGATGAATTTGGTCTAAAA+CGG | 0.460751 | 7.3:-46323588 | None:intergenic |
CTGGAGGGTTTCTCTTTGAG+TGG | 0.463038 | 7.3:+46318848 | MS.gene96563:CDS |
GTTAGAGGCCATCCCTTCAA+TGG | 0.469250 | 7.3:-46320597 | None:intergenic |
GATCAACTAAGACCTGGTTT+GGG | 0.472897 | 7.3:+46320714 | MS.gene96563:CDS |
CTTGGCATCACAACAACAAC+AGG | 0.475029 | 7.3:+46320782 | MS.gene96563:CDS |
TGCGGTATTGCAACAAATGC+AGG | 0.477178 | 7.3:+46319759 | MS.gene96563:CDS |
ATGTATGGTGCAGAAGCAAC+TGG | 0.477378 | 7.3:+46322260 | MS.gene96563:CDS |
GTGAGGTTTCAGCCTGGATC+GGG | 0.477744 | 7.3:+46324053 | MS.gene96563:CDS |
GCTGCCAATAGCACTGGTAC+TGG | 0.478935 | 7.3:+46322125 | MS.gene96563:CDS |
TAGACCAAATTCATCTCAGT+TGG | 0.486643 | 7.3:+46323594 | MS.gene96563:CDS |
TCAAATGATGCAGGAGATGC+TGG | 0.486665 | 7.3:+46322672 | MS.gene96563:CDS |
CATGAACTCTGAAGGTATGT+TGG | 0.492726 | 7.3:+46319455 | MS.gene96563:CDS |
GCAGCAGCATCAACTGCAGC+AGG | 0.494418 | 7.3:+46321500 | MS.gene96563:CDS |
AGATCCTAATCATCCTGGAC+TGG | 0.494987 | 7.3:+46319416 | MS.gene96563:CDS |
GAAATCACATTCTCATGTGC+AGG | 0.497961 | 7.3:-46325238 | None:intergenic |
GGTCAATCTAACAGGAATGA+TGG | 0.498321 | 7.3:+46320915 | MS.gene96563:CDS |
TGTCTCAGTCAGTTGGTCCA+TGG | 0.501237 | 7.3:+46319718 | MS.gene96563:intron |
TCTTATTGATGCAAATAGAA+TGG | 0.502350 | 7.3:+46319566 | MS.gene96563:CDS |
CGATTCTACAATCGAAATCT+GGG | 0.506221 | 7.3:+46319989 | MS.gene96563:CDS |
AATATTTGCTGGGATACTAC+TGG | 0.509723 | 7.3:+46324430 | MS.gene96563:CDS |
GAGGGTTTCTCTTTGAGTGG+TGG | 0.511598 | 7.3:+46318851 | MS.gene96563:CDS |
CTGGCACAACAAAACAGCCT+TGG | 0.512766 | 7.3:+46320819 | MS.gene96563:CDS |
AAATCAGCAACAAGTCATCA+AGG | 0.513351 | 7.3:+46319597 | MS.gene96563:CDS |
AAATCTGGGTTAGGCAGTGC+AGG | 0.515833 | 7.3:+46320003 | MS.gene96563:CDS |
TATTCTTGAACACAATAGGT+TGG | 0.516797 | 7.3:-46323801 | None:intergenic |
GGATACTACTGGAGATATGC+TGG | 0.518365 | 7.3:+46324441 | MS.gene96563:CDS |
GCAGCCACCAGCAAGTGCAT+TGG | 0.523196 | 7.3:+46319479 | MS.gene96563:CDS |
CATGGGAAAATTCTTTGGAC+TGG | 0.526682 | 7.3:-46319944 | None:intergenic |
TTCAAAGAACCACCCAGTCC+AGG | 0.526740 | 7.3:-46319429 | None:intergenic |
CACCATAATTAGAATTTCCA+AGG | 0.530895 | 7.3:-46320836 | None:intergenic |
AGTTACAAGTCTTCCATTGA+AGG | 0.531861 | 7.3:+46320584 | MS.gene96563:CDS |
ATCACAACAACAACAGGTCT+TGG | 0.532144 | 7.3:+46320788 | MS.gene96563:CDS |
TCCTTTCTATCAAATGATGC+AGG | 0.532417 | 7.3:+46322663 | MS.gene96563:CDS |
ATGGCCAATGCACTTGCTGG+TGG | 0.533520 | 7.3:-46319483 | None:intergenic |
CAAGTCTTCCATTGAAGGGA+TGG | 0.533713 | 7.3:+46320589 | MS.gene96563:CDS |
ATTAGTAGTCGGAGGGACTT+CGG | 0.534144 | 7.3:+46324585 | MS.gene96563:CDS |
TGAGAATGTGATTTCTGCGT+TGG | 0.535664 | 7.3:+46325246 | MS.gene96563:CDS |
GTTTGAGCTTGACCCAAAGT+TGG | 0.537305 | 7.3:-46318343 | None:intergenic |
AGTGAGGTTTCAGCCTGGAT+CGG | 0.538725 | 7.3:+46324052 | MS.gene96563:CDS |
ACCGTTGAACAATATTTGCT+GGG | 0.540385 | 7.3:+46324420 | MS.gene96563:CDS |
CGAAGAGATCCTAATCATCC+TGG | 0.545254 | 7.3:+46319411 | MS.gene96563:CDS |
GATCCTAATCATCCTGGACT+GGG | 0.546709 | 7.3:+46319417 | MS.gene96563:CDS |
ACATCTGAATCCATTGAATG+AGG | 0.547319 | 7.3:-46319534 | None:intergenic |
ATAGATCGATTTGGAGATGT+TGG | 0.547428 | 7.3:+46322618 | MS.gene96563:CDS |
GTCCTTAGAGCTGTGGAACA+TGG | 0.548837 | 7.3:+46325192 | MS.gene96563:intron |
AACATACCTTCAGAGTTCAT+GGG | 0.549284 | 7.3:-46319453 | None:intergenic |
CAAAAGAGCATGATGATGTA+TGG | 0.551022 | 7.3:+46322245 | MS.gene96563:CDS |
TTCAGGAGCTCAACTCTACT+GGG | 0.552222 | 7.3:+46324518 | MS.gene96563:CDS |
TATGCAACTTTATTAGTAGT+CGG | 0.552448 | 7.3:+46324574 | MS.gene96563:CDS |
TCTGGAGCTGCCAATAGCAC+TGG | 0.557212 | 7.3:+46322119 | MS.gene96563:CDS |
TGAGTGTGCTGCTACTGGAA+TGG | 0.557700 | 7.3:+46325270 | MS.gene96563:CDS |
AAGATATGGAATTTGACCTC+AGG | 0.557728 | 7.3:+46324487 | MS.gene96563:CDS |
CTTTACAGAGTTGTCACGAC+TGG | 0.558560 | 7.3:-46325302 | None:intergenic |
CCAGGTGTGTGTGTCGATGA+TGG | 0.560213 | 7.3:-46322176 | None:intergenic |
AGTTGGTCCATGGTAATTCA+GGG | 0.560693 | 7.3:+46319728 | MS.gene96563:CDS |
CTACAATCGAAATCTGGGTT+AGG | 0.560952 | 7.3:+46319994 | MS.gene96563:CDS |
CAACTTTATTAGTAGTCGGA+GGG | 0.561039 | 7.3:+46324578 | MS.gene96563:CDS |
TTGAACCCCATGAACTCTGA+AGG | 0.565456 | 7.3:+46319447 | MS.gene96563:CDS |
CCATCATCGACACACACACC+TGG | 0.568091 | 7.3:+46322176 | MS.gene96563:CDS |
TGTTGTCATACAGATGAAGA+TGG | 0.570938 | 7.3:+46321446 | MS.gene96563:intron |
AGAGTTGTCACGACTGGCAG+AGG | 0.573691 | 7.3:-46325296 | None:intergenic |
CATCTGAATCCATTGAATGA+GGG | 0.576618 | 7.3:-46319533 | None:intergenic |
GTTACAAGTCTTCCATTGAA+GGG | 0.577894 | 7.3:+46320585 | MS.gene96563:CDS |
TATGCAGCTAAATTCAGCAA+AGG | 0.578065 | 7.3:-46322839 | None:intergenic |
TCGACACACACACCTGGTGA+TGG | 0.580879 | 7.3:+46322182 | MS.gene96563:CDS |
TTGATAGCAATTGATGCACC+TGG | 0.581055 | 7.3:+46318829 | MS.gene96563:intron |
CAGACAAATTTACTCACTCC+AGG | 0.587469 | 7.3:+46324133 | MS.gene96563:CDS |
ACTGGTACTGGAAACACAGC+TGG | 0.587738 | 7.3:+46322137 | MS.gene96563:CDS |
CTTCTTAGGGTGGAAATCAA+GGG | 0.588390 | 7.3:-46323850 | None:intergenic |
GGCTGCTGCATCTTACATCA+AGG | 0.588749 | 7.3:+46318924 | MS.gene96563:CDS |
TCCCAGCAAATATTGTTCAA+CGG | 0.591234 | 7.3:-46324421 | None:intergenic |
TGAACCTGATTGCATTTGGT+AGG | 0.592367 | 7.3:-46320946 | None:intergenic |
GTGACAACTCTGTAAAGTTG+TGG | 0.593245 | 7.3:+46325308 | MS.gene96563:CDS |
TTGACCAACCTTAGATACAC+GGG | 0.593291 | 7.3:-46323943 | None:intergenic |
GCAAAAGTGAGGTTTCAGCC+TGG | 0.593703 | 7.3:+46324047 | MS.gene96563:CDS |
GTGTGCAGTCCTTAGAGCTG+TGG | 0.595446 | 7.3:+46325185 | MS.gene96563:intron |
GATGAATATATCCCAAAAGA+CGG | 0.596758 | 7.3:-46318875 | None:intergenic |
GCAACTTTATTAGTAGTCGG+AGG | 0.598859 | 7.3:+46324577 | MS.gene96563:CDS |
ATCAAAGGAGAAGTTAACAT+TGG | 0.600466 | 7.3:+46319919 | MS.gene96563:CDS |
AATGCAATCAGGTTCACCTA+AGG | 0.601832 | 7.3:+46320953 | MS.gene96563:CDS |
TCGAGGTAGCTTAAACGCAA+AGG | 0.606036 | 7.3:+46320890 | MS.gene96563:CDS |
AGACTTTCTGGTCTTTCTCG+AGG | 0.606690 | 7.3:+46320873 | MS.gene96563:CDS |
CGATAAACTGACGAATCCAT+GGG | 0.609032 | 7.3:-46319961 | None:intergenic |
GATGTATTTAATCCATCACC+AGG | 0.609873 | 7.3:-46322194 | None:intergenic |
CACTCAAAGAGAAACCCTCC+AGG | 0.610561 | 7.3:-46318847 | None:intergenic |
GGTAGCTTAAACGCAAAGGA+TGG | 0.610775 | 7.3:+46320894 | MS.gene96563:CDS |
CTTAGATACACGGGTACACG+AGG | 0.614445 | 7.3:-46323934 | None:intergenic |
ACAACAACAGGTCTTGGCAC+AGG | 0.616147 | 7.3:+46320794 | MS.gene96563:CDS |
AGGGAGGGAATGCAAAAGTG+AGG | 0.617434 | 7.3:+46324036 | MS.gene96563:intron |
AAAGTTTCAACTGATCCAGT+AGG | 0.618148 | 7.3:+46318603 | MS.gene96563:CDS |
GCAGAGAGTCCATATTCCAC+AGG | 0.618226 | 7.3:-46323519 | None:intergenic |
TTTGACCAACCTTAGATACA+CGG | 0.624243 | 7.3:-46323944 | None:intergenic |
TGAACTTGTACACCCAAACC+AGG | 0.624306 | 7.3:-46320726 | None:intergenic |
AATCAGCAACAAGTCATCAA+GGG | 0.625746 | 7.3:+46319598 | MS.gene96563:CDS |
CTCCTGAACGCATTCTCCTG+AGG | 0.626633 | 7.3:-46324503 | None:intergenic |
CCTAATCATCCTGGACTGGG+TGG | 0.629932 | 7.3:+46319420 | MS.gene96563:CDS |
TAGCAATTGATGCACCTGGA+GGG | 0.630055 | 7.3:+46318833 | MS.gene96563:intron |
TGGTGCTTTAGATGATAATG+TGG | 0.631026 | 7.3:+46322638 | MS.gene96563:CDS |
GGGTCAAGCTCAAACTAACT+GGG | 0.631489 | 7.3:+46318351 | MS.gene96563:CDS |
TATTGCAACAAATGCAGGCA+CGG | 0.635151 | 7.3:+46319764 | MS.gene96563:CDS |
ACATATTCCCTGAATTACCA+TGG | 0.638649 | 7.3:-46319735 | None:intergenic |
AACAAATGAGATGCATTCTG+AGG | 0.639499 | 7.3:+46318903 | MS.gene96563:CDS |
GCATGTATCAGGTTGTCCTG+TGG | 0.643655 | 7.3:+46323503 | MS.gene96563:intron |
CCGCACAGATTTGTCACATG+AGG | 0.645521 | 7.3:-46323623 | None:intergenic |
ACATACCTTCAGAGTTCATG+GGG | 0.646193 | 7.3:-46319452 | None:intergenic |
GGAATTGATCAACTAAGACC+TGG | 0.651794 | 7.3:+46320708 | MS.gene96563:CDS |
AATAAAACAAAGCCCAGCTG+AGG | 0.653660 | 7.3:+46322710 | MS.gene96563:CDS |
TGAACTCTGAAGGTATGTTG+GGG | 0.670256 | 7.3:+46319457 | MS.gene96563:CDS |
TCAGTAGACCCAGCAGACGA+AGG | 0.671863 | 7.3:+46319326 | MS.gene96563:intron |
ATAGCAATTGATGCACCTGG+AGG | 0.672486 | 7.3:+46318832 | MS.gene96563:intron |
TATTGTGTTCAAGAATATAG+CGG | 0.694108 | 7.3:+46323807 | MS.gene96563:CDS |
TAATTCAGGGAATATGTCTG+CGG | 0.721386 | 7.3:+46319741 | MS.gene96563:CDS |
TATGGTGCAGAAGCAACTGG+AGG | 0.725329 | 7.3:+46322263 | MS.gene96563:CDS |
GATGATGGTGAATTAGGTGA+AGG | 0.730577 | 7.3:-46322161 | None:intergenic |
TGTGGAATATGGACTCTCTG+CGG | 0.738954 | 7.3:+46323521 | MS.gene96563:CDS |
GAAAGACCAGAAAGTCTACG+TGG | 0.762815 | 7.3:-46320867 | None:intergenic |
CCTCATGTGACAAATCTGTG+CGG | 0.774368 | 7.3:+46323623 | MS.gene96563:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 46318337 | 46325336 | 46318337 | ID=MS.gene96563 |
chr7.3 | mRNA | 46318337 | 46325336 | 46318337 | ID=MS.gene96563.t1;Parent=MS.gene96563 |
chr7.3 | exon | 46318337 | 46318386 | 46318337 | ID=MS.gene96563.t1.exon1;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46318337 | 46318386 | 46318337 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46318527 | 46318624 | 46318527 | ID=MS.gene96563.t1.exon2;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46318527 | 46318624 | 46318527 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46318836 | 46318945 | 46318836 | ID=MS.gene96563.t1.exon3;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46318836 | 46318945 | 46318836 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46319333 | 46319619 | 46319333 | ID=MS.gene96563.t1.exon4;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46319333 | 46319619 | 46319333 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46319726 | 46319801 | 46319726 | ID=MS.gene96563.t1.exon5;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46319726 | 46319801 | 46319726 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46319916 | 46320024 | 46319916 | ID=MS.gene96563.t1.exon6;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46319916 | 46320024 | 46319916 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46320571 | 46320620 | 46320571 | ID=MS.gene96563.t1.exon7;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46320571 | 46320620 | 46320571 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46320708 | 46320974 | 46320708 | ID=MS.gene96563.t1.exon8;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46320708 | 46320974 | 46320708 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46321459 | 46321521 | 46321459 | ID=MS.gene96563.t1.exon9;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46321459 | 46321521 | 46321459 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46322089 | 46322310 | 46322089 | ID=MS.gene96563.t1.exon10;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46322089 | 46322310 | 46322089 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46322612 | 46322753 | 46322612 | ID=MS.gene96563.t1.exon11;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46322612 | 46322753 | 46322612 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46322833 | 46322939 | 46322833 | ID=MS.gene96563.t1.exon12;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46322833 | 46322939 | 46322833 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46323514 | 46323663 | 46323514 | ID=MS.gene96563.t1.exon13;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46323514 | 46323663 | 46323514 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46323801 | 46323956 | 46323801 | ID=MS.gene96563.t1.exon14;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46323801 | 46323956 | 46323801 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46324038 | 46324154 | 46324038 | ID=MS.gene96563.t1.exon15;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46324038 | 46324154 | 46324038 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46324409 | 46324606 | 46324409 | ID=MS.gene96563.t1.exon16;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46324409 | 46324606 | 46324409 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
chr7.3 | exon | 46325193 | 46325336 | 46325193 | ID=MS.gene96563.t1.exon17;Parent=MS.gene96563.t1 |
chr7.3 | CDS | 46325193 | 46325336 | 46325193 | ID=cds.MS.gene96563.t1;Parent=MS.gene96563.t1 |
Gene Sequence |
Protein sequence |