Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96684.t1 | XP_024628783.1 | 48.5 | 303 | 119 | 1 | 1 | 266 | 58 | 360 | 8.90E-77 | 297 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96684.t1 | A0A392M0A7 | 46.7 | 319 | 117 | 1 | 1 | 266 | 58 | 376 | 7.6e-78 | 300.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene96684 | 0.874944 | 4.54E-68 | -1.69E-46 |
| MS.gene05531 | MS.gene96684 | 0.804764 | 1.85E-49 | -1.69E-46 |
| MS.gene055952 | MS.gene96684 | 0.858433 | 8.27E-63 | -1.69E-46 |
| MS.gene056272 | MS.gene96684 | 0.80271 | 4.93E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96684.t1 | MTR_5g078250 | 47.962 | 319 | 112 | 2 | 1 | 266 | 58 | 375 | 6.18e-97 | 293 |
| MS.gene96684.t1 | MTR_8g062030 | 44.514 | 319 | 124 | 3 | 1 | 266 | 58 | 376 | 2.55e-88 | 273 |
| MS.gene96684.t1 | MTR_1g075850 | 46.048 | 291 | 105 | 3 | 1 | 239 | 52 | 342 | 8.06e-79 | 247 |
| MS.gene96684.t1 | MTR_6g051890 | 46.429 | 252 | 99 | 1 | 1 | 252 | 62 | 277 | 9.99e-72 | 225 |
| MS.gene96684.t1 | MTR_4g046077 | 46.154 | 260 | 101 | 3 | 46 | 266 | 1 | 260 | 4.48e-70 | 221 |
| MS.gene96684.t1 | MTR_0042s0170 | 52.193 | 228 | 81 | 5 | 46 | 266 | 1 | 207 | 4.55e-64 | 206 |
| MS.gene96684.t1 | MTR_4g036240 | 28.972 | 321 | 170 | 3 | 1 | 266 | 58 | 375 | 1.42e-41 | 150 |
| MS.gene96684.t1 | MTR_3g056270 | 28.660 | 321 | 171 | 3 | 1 | 266 | 217 | 534 | 6.64e-40 | 147 |
| MS.gene96684.t1 | MTR_3g056270 | 39.474 | 114 | 69 | 0 | 1 | 114 | 58 | 171 | 3.63e-19 | 87.0 |
| MS.gene96684.t1 | MTR_8g059025 | 76.543 | 81 | 19 | 0 | 1 | 81 | 58 | 138 | 1.04e-38 | 132 |
| MS.gene96684.t1 | MTR_2g048560 | 28.931 | 318 | 172 | 6 | 1 | 264 | 58 | 375 | 1.98e-38 | 141 |
| MS.gene96684.t1 | MTR_6g052340 | 58.772 | 114 | 44 | 1 | 3 | 113 | 56 | 169 | 2.95e-35 | 133 |
| MS.gene96684.t1 | MTR_8g479260 | 27.044 | 318 | 176 | 4 | 1 | 263 | 60 | 376 | 9.20e-35 | 131 |
| MS.gene96684.t1 | MTR_2g008650 | 27.044 | 318 | 176 | 4 | 1 | 263 | 60 | 376 | 1.78e-34 | 130 |
| MS.gene96684.t1 | MTR_4g036240 | 27.703 | 296 | 156 | 3 | 26 | 266 | 3 | 295 | 1.34e-33 | 127 |
| MS.gene96684.t1 | MTR_8g467450 | 64.634 | 82 | 29 | 0 | 1 | 82 | 58 | 139 | 2.29e-28 | 105 |
| MS.gene96684.t1 | MTR_3g081610 | 46.392 | 97 | 47 | 2 | 131 | 227 | 10 | 101 | 2.39e-24 | 97.8 |
| MS.gene96684.t1 | MTR_4g134870 | 38.235 | 136 | 77 | 1 | 131 | 266 | 117 | 245 | 9.21e-24 | 99.8 |
| MS.gene96684.t1 | MTR_7g032985 | 57.534 | 73 | 31 | 0 | 43 | 115 | 1 | 73 | 1.20e-22 | 89.0 |
| MS.gene96684.t1 | MTR_3g116750 | 41.228 | 114 | 67 | 0 | 1 | 114 | 58 | 171 | 1.88e-22 | 91.3 |
| MS.gene96684.t1 | MTR_3g095950 | 41.228 | 114 | 67 | 0 | 1 | 114 | 58 | 171 | 2.07e-22 | 91.3 |
| MS.gene96684.t1 | MTR_4g016120 | 41.228 | 114 | 67 | 0 | 1 | 114 | 49 | 162 | 2.80e-22 | 90.5 |
| MS.gene96684.t1 | MTR_2g048550 | 24.308 | 325 | 177 | 7 | 1 | 264 | 58 | 374 | 6.74e-22 | 94.7 |
| MS.gene96684.t1 | MTR_4g471610 | 40.351 | 114 | 68 | 0 | 1 | 114 | 58 | 171 | 1.76e-21 | 89.0 |
| MS.gene96684.t1 | MTR_3g078440 | 40.351 | 114 | 68 | 0 | 1 | 114 | 58 | 171 | 1.76e-21 | 89.0 |
| MS.gene96684.t1 | MTR_8g036090 | 40.351 | 114 | 68 | 0 | 1 | 114 | 58 | 171 | 1.76e-21 | 89.0 |
| MS.gene96684.t1 | MTR_2g062200 | 39.655 | 116 | 66 | 2 | 1 | 114 | 15 | 128 | 1.85e-21 | 89.0 |
| MS.gene96684.t1 | MTR_4g036240 | 31.169 | 154 | 101 | 2 | 115 | 266 | 82 | 232 | 1.99e-21 | 93.2 |
| MS.gene96684.t1 | MTR_8g461360 | 39.474 | 114 | 69 | 0 | 1 | 114 | 1 | 114 | 2.00e-21 | 90.1 |
| MS.gene96684.t1 | MTR_7g093810 | 40.351 | 114 | 68 | 0 | 1 | 114 | 58 | 171 | 2.36e-21 | 88.6 |
| MS.gene96684.t1 | MTR_1g036740 | 41.441 | 111 | 65 | 0 | 1 | 111 | 58 | 168 | 3.86e-21 | 87.8 |
| MS.gene96684.t1 | MTR_8g096680 | 41.441 | 111 | 65 | 0 | 1 | 111 | 58 | 168 | 3.86e-21 | 87.8 |
| MS.gene96684.t1 | MTR_5g055160 | 31.792 | 173 | 114 | 2 | 1 | 173 | 58 | 226 | 6.52e-21 | 89.7 |
| MS.gene96684.t1 | MTR_4g028320 | 41.441 | 111 | 65 | 0 | 1 | 111 | 39 | 149 | 7.99e-21 | 86.7 |
| MS.gene96684.t1 | MTR_8g062060 | 22.403 | 308 | 182 | 3 | 9 | 261 | 66 | 371 | 4.22e-20 | 89.7 |
| MS.gene96684.t1 | MTR_5g007120 | 31.034 | 174 | 117 | 2 | 1 | 173 | 27 | 198 | 4.35e-20 | 86.3 |
| MS.gene96684.t1 | MTR_4g022520 | 34.132 | 167 | 104 | 3 | 2 | 163 | 19 | 184 | 4.63e-20 | 85.9 |
| MS.gene96684.t1 | MTR_5g056060 | 31.034 | 174 | 117 | 2 | 1 | 173 | 52 | 223 | 6.59e-20 | 86.7 |
| MS.gene96684.t1 | MTR_3g084550 | 39.640 | 111 | 67 | 0 | 1 | 111 | 17 | 127 | 1.22e-19 | 82.8 |
| MS.gene96684.t1 | MTR_3g056240 | 39.344 | 122 | 58 | 2 | 1 | 114 | 58 | 171 | 1.84e-19 | 86.7 |
| MS.gene96684.t1 | MTR_7g104000 | 30.460 | 174 | 119 | 2 | 1 | 173 | 52 | 224 | 4.17e-19 | 84.0 |
| MS.gene96684.t1 | MTR_5g085220 | 39.474 | 114 | 69 | 0 | 1 | 114 | 58 | 171 | 5.92e-19 | 82.0 |
| MS.gene96684.t1 | MTR_1g072220 | 37.838 | 111 | 69 | 0 | 1 | 111 | 17 | 127 | 2.30e-18 | 79.3 |
| MS.gene96684.t1 | MTR_6g039240 | 26.636 | 214 | 116 | 3 | 1 | 173 | 58 | 271 | 4.31e-18 | 82.0 |
| MS.gene96684.t1 | MTR_7g089660 | 38.614 | 101 | 62 | 0 | 1 | 101 | 58 | 158 | 1.23e-17 | 80.1 |
| MS.gene96684.t1 | MTR_1g094230 | 26.636 | 214 | 116 | 3 | 1 | 173 | 58 | 271 | 1.66e-17 | 80.9 |
| MS.gene96684.t1 | MTR_8g078450 | 33.548 | 155 | 88 | 2 | 18 | 172 | 2 | 141 | 1.74e-17 | 77.8 |
| MS.gene96684.t1 | MTR_8g463820 | 26.291 | 213 | 116 | 3 | 1 | 172 | 58 | 270 | 3.07e-17 | 79.7 |
| MS.gene96684.t1 | MTR_6g445520 | 28.931 | 159 | 95 | 3 | 115 | 264 | 91 | 240 | 6.17e-17 | 80.1 |
| MS.gene96684.t1 | MTR_2g054710 | 37.838 | 111 | 69 | 0 | 1 | 111 | 60 | 170 | 1.86e-16 | 77.4 |
| MS.gene96684.t1 | MTR_2g099880 | 39.640 | 111 | 67 | 0 | 1 | 111 | 23 | 133 | 3.13e-16 | 73.9 |
| MS.gene96684.t1 | MTR_6g013455 | 27.064 | 218 | 127 | 4 | 1 | 186 | 52 | 269 | 1.67e-15 | 74.7 |
| MS.gene96684.t1 | MTR_8g088810 | 38.596 | 114 | 70 | 0 | 1 | 114 | 58 | 171 | 1.28e-14 | 72.8 |
| MS.gene96684.t1 | MTR_2g032570 | 36.207 | 116 | 72 | 1 | 1 | 114 | 58 | 173 | 1.99e-13 | 67.0 |
| MS.gene96684.t1 | MTR_4g040040 | 34.940 | 83 | 54 | 0 | 180 | 262 | 3 | 85 | 2.37e-13 | 66.6 |
| MS.gene96684.t1 | MTR_1g060700 | 47.222 | 72 | 38 | 0 | 46 | 117 | 1 | 72 | 7.76e-13 | 68.2 |
| MS.gene96684.t1 | MTR_5g068430 | 34.343 | 99 | 65 | 0 | 1 | 99 | 51 | 149 | 1.91e-12 | 64.7 |
| MS.gene96684.t1 | MTR_3g067530 | 32.576 | 132 | 79 | 4 | 18 | 149 | 2 | 123 | 1.74e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGTGTTTGTATTTTG+TGG | + | 43134:15893-15912 | MS.gene96684:intron | 20.0% |
| !!! | CATGTTATTTTGATATTCTT+AGG | + | 43134:16265-16284 | MS.gene96684:intron | 20.0% |
| ! | ACAAACTAAAGTACAACAAT+AGG | - | 43134:15617-15636 | MS.gene96684:intergenic | 25.0% |
| !! | ATTTGGAAAAGTAACTTGTA+AGG | - | 43134:15100-15119 | MS.gene96684:intergenic | 25.0% |
| !! | TTTTGATATTCTTAGGTATG+AGG | + | 43134:16272-16291 | MS.gene96684:intron | 25.0% |
| !!! | TGTTGTACTTTAGTTTGTTA+AGG | + | 43134:15619-15638 | MS.gene96684:intron | 25.0% |
| !!! | TTGGTAATTTTTTGTAGACA+AGG | + | 43134:15723-15742 | MS.gene96684:intron | 25.0% |
| !!! | TTTTTAGTTTTATTGTCGTG+TGG | + | 43134:15260-15279 | MS.gene96684:intron | 25.0% |
| GATAACATTAGCATTACCTA+GGG | - | 43134:16203-16222 | MS.gene96684:intergenic | 30.0% | |
| GCTAATGTTATCCTAATGAT+TGG | + | 43134:16211-16230 | MS.gene96684:intron | 30.0% | |
| GTTAAGGTTAAGATATTTCG+AGG | + | 43134:15635-15654 | MS.gene96684:intron | 30.0% | |
| TACAACAATAAACAACTGAC+AGG | - | 43134:15866-15885 | MS.gene96684:intergenic | 30.0% | |
| TACTGTATTGTAGACATCAT+TGG | + | 43134:15309-15328 | MS.gene96684:intron | 30.0% | |
| TCATGGGAAAATCTTTGAAT+GGG | + | 43134:15588-15607 | MS.gene96684:intron | 30.0% | |
| TGAATGATGTTGTTGACAAT+GGG | + | 43134:16034-16053 | MS.gene96684:CDS | 30.0% | |
| TGATGAGGTTGTTAAGTTTA+AGG | + | 43134:15798-15817 | MS.gene96684:CDS | 30.0% | |
| TTGAATGATGTTGTTGACAA+TGG | + | 43134:16033-16052 | MS.gene96684:CDS | 30.0% | |
| ! | TTTGTGTTTGTATTTTGTGG+AGG | + | 43134:15896-15915 | MS.gene96684:intron | 30.0% |
| !! | TTTATTGTCGTGTGGTTTTA+TGG | + | 43134:15268-15287 | MS.gene96684:intron | 30.0% |
| !!! | ACATCATTGGTTTTATGACT+GGG | + | 43134:15322-15341 | MS.gene96684:CDS | 30.0% |
| ACACAAAGACACCAATCATT+AGG | - | 43134:16225-16244 | MS.gene96684:intergenic | 35.0% | |
| AGGTAAACAGTGTAGTGATT+TGG | + | 43134:16368-16387 | MS.gene96684:CDS | 35.0% | |
| AGGTTGTTAAGTTTAAGGAG+GGG | + | 43134:15803-15822 | MS.gene96684:CDS | 35.0% | |
| AGTTCTCAGATTCCACAATA+TGG | + | 43134:15145-15164 | MS.gene96684:CDS | 35.0% | |
| CTCATGGGAAAATCTTTGAA+TGG | + | 43134:15587-15606 | MS.gene96684:intron | 35.0% | |
| GACAATGGGAATTATGTTGT+CGG | + | 43134:16048-16067 | MS.gene96684:CDS | 35.0% | |
| GAGGTTGTTAAGTTTAAGGA+GGG | + | 43134:15802-15821 | MS.gene96684:CDS | 35.0% | |
| GGATAACATTAGCATTACCT+AGG | - | 43134:16204-16223 | MS.gene96684:intergenic | 35.0% | |
| GGTTAAGATATTTCGAGGTA+TGG | + | 43134:15640-15659 | MS.gene96684:intron | 35.0% | |
| TAACAACCTCATCAATGTCA+GGG | - | 43134:15792-15811 | MS.gene96684:intergenic | 35.0% | |
| TGAGGTTGTTAAGTTTAAGG+AGG | + | 43134:15801-15820 | MS.gene96684:CDS | 35.0% | |
| TTAACAACCTCATCAATGTC+AGG | - | 43134:15793-15812 | MS.gene96684:intergenic | 35.0% | |
| TTCAATACTCACCAACCAAA+TGG | - | 43134:15222-15241 | MS.gene96684:intergenic | 35.0% | |
| ! | ACTTTTCCAAATGAAGACCA+AGG | + | 43134:15108-15127 | MS.gene96684:CDS | 35.0% |
| ! | TACTGTTGATTACGACCATT+TGG | + | 43134:15204-15223 | MS.gene96684:CDS | 35.0% |
| !! | ATTGTTGATGGTTTGGTTGA+GGG | + | 43134:16075-16094 | MS.gene96684:CDS | 35.0% |
| !! | GTTGTGTTTGTTGTGTTTGA+CGG | + | 43134:16327-16346 | MS.gene96684:CDS | 35.0% |
| !!! | GACATCATTGGTTTTATGAC+TGG | + | 43134:15321-15340 | MS.gene96684:intron | 35.0% |
| !!! | TAGTGGTTTTGGTGAATCTT+TGG | + | 43134:15704-15723 | MS.gene96684:intron | 35.0% |
| !!! | TGTCAGTGTTTTTTGTGAAG+AGG | + | 43134:15432-15451 | MS.gene96684:intron | 35.0% |
| AAAAACTCCTCTTCAAGCGA+CGG | - | 43134:15982-16001 | MS.gene96683:intergenic | 40.0% | |
| AACACCTCTATGAAACCTAC+AGG | - | 43134:16121-16140 | MS.gene96683:intergenic | 40.0% | |
| AAGGTTGAGTGTGCATTGTT+TGG | + | 43134:15539-15558 | MS.gene96684:intron | 40.0% | |
| ACTCGGAGCAATAGAGAAAT+AGG | - | 43134:15050-15069 | MS.gene96684:intergenic | 40.0% | |
| ATTATCGGTCAGTTGTCTCA+TGG | + | 43134:15479-15498 | MS.gene96684:intron | 40.0% | |
| ATTATGTACGCGCAAGATTG+GGG | + | 43134:15168-15187 | MS.gene96684:CDS | 40.0% | |
| ATTCACCAAAACCACTACGA+AGG | - | 43134:15701-15720 | MS.gene96684:intergenic | 40.0% | |
| CAACTCGATCACAATCATCT+TGG | - | 43134:15388-15407 | MS.gene96684:intergenic | 40.0% | |
| CGCGTACATAATCCATATTG+TGG | - | 43134:15160-15179 | MS.gene96684:intergenic | 40.0% | |
| GATTATGTACGCGCAAGATT+GGG | + | 43134:15167-15186 | MS.gene96684:CDS | 40.0% | |
| GTTGATTACGACCATTTGGT+TGG | + | 43134:15208-15227 | MS.gene96684:CDS | 40.0% | |
| TATCAACCCTGACATTGATG+AGG | + | 43134:15783-15802 | MS.gene96684:CDS | 40.0% | |
| TATGAGGTGAAGATCTGTGT+CGG | + | 43134:16288-16307 | MS.gene96684:CDS | 40.0% | |
| TTGTGGAGGATTATTGTGCA+TGG | + | 43134:15910-15929 | MS.gene96684:intron | 40.0% | |
| ! | GGTGATATGCAGAATTTGCT+AGG | + | 43134:16348-16367 | MS.gene96684:CDS | 40.0% |
| !! | ACAGTGTAGTGATTTGGTGT+CGG | + | 43134:16374-16393 | MS.gene96684:CDS | 40.0% |
| !! | CATTGTTGATGGTTTGGTTG+AGG | + | 43134:16074-16093 | MS.gene96684:CDS | 40.0% |
| !! | TGGATTGGTTATTTGTCGTG+TGG | + | 43134:15499-15518 | MS.gene96684:intron | 40.0% |
| !! | TGTAAGGATGAAGTGTCGAA+CGG | - | 43134:15084-15103 | MS.gene96684:intergenic | 40.0% |
| !! | TTTGGTGCTTACTACTGCAA+GGG | + | 43134:16150-16169 | MS.gene96684:CDS | 40.0% |
| !!! | AGTTTTTGGTTGCTGGTCAT+AGG | + | 43134:15995-16014 | MS.gene96684:CDS | 40.0% |
| !!! | GTGTGGTTTTATGGTTGTTG+AGG | + | 43134:15277-15296 | MS.gene96684:intron | 40.0% |
| !!! | GTTTTTGGTTGCTGGTCATA+GGG | + | 43134:15996-16015 | MS.gene96684:CDS | 40.0% |
| ACATCCCCTTCCCTTAGTTT+CGG | - | 43134:15016-15035 | MS.gene96684:intergenic | 45.0% | |
| ACTCTCACTTTCCTGAACCT+TGG | - | 43134:15128-15147 | MS.gene96684:intergenic | 45.0% | |
| ATGTGTTCCAGCCGAAACTA+AGG | + | 43134:15002-15021 | MS.gene96684:CDS | 45.0% | |
| ATGTGTTTCAGATGGTCCCT+AGG | + | 43134:16184-16203 | MS.gene96684:CDS | 45.0% | |
| CAGTAGTAAGCACCAAAGTC+GGG | - | 43134:16147-16166 | MS.gene96684:intergenic | 45.0% | |
| CCAAAACCACTACGAAGGAT+TGG | - | 43134:15696-15715 | MS.gene96684:intergenic | 45.0% | |
| CCAAATGAAGACCAAGGTTC+AGG | + | 43134:15114-15133 | MS.gene96684:CDS | 45.0% | |
| CCTACCTGTAGGTTTCATAG+AGG | + | 43134:16114-16133 | MS.gene96684:CDS | 45.0% | |
| CCTCTATGAAACCTACAGGT+AGG | - | 43134:16117-16136 | MS.gene96684:intergenic | 45.0% | |
| CGAATTCTTGGACCAATCAC+CGG | - | 43134:15958-15977 | MS.gene96684:intergenic | 45.0% | |
| CGTGAAGCATGTGTTTCAGA+TGG | + | 43134:16176-16195 | MS.gene96684:CDS | 45.0% | |
| GCAGTAGTAAGCACCAAAGT+CGG | - | 43134:16148-16167 | MS.gene96684:intergenic | 45.0% | |
| GGATTATGTACGCGCAAGAT+TGG | + | 43134:15166-15185 | MS.gene96684:CDS | 45.0% | |
| GTTGTCGGTGACATTGTTGA+TGG | + | 43134:16063-16082 | MS.gene96684:CDS | 45.0% | |
| GTTTGGTTGAGGGTGATGAT+TGG | + | 43134:16085-16104 | MS.gene96684:CDS | 45.0% | |
| TCTCTATTGCTCCGAGTGTT+GGG | + | 43134:15053-15072 | MS.gene96684:CDS | 45.0% | |
| TGGCATTCAACACGTTCTAG+AGG | - | 43134:15753-15772 | MS.gene96684:intergenic | 45.0% | |
| TGTGTTCCAGCCGAAACTAA+GGG | + | 43134:15003-15022 | MS.gene96684:CDS | 45.0% | |
| TTCCCATGAGCTTGAGCAAA+AGG | - | 43134:15577-15596 | MS.gene96684:intergenic | 45.0% | |
| TTCTCTATTGCTCCGAGTGT+TGG | + | 43134:15052-15071 | MS.gene96684:CDS | 45.0% | |
| ! | ATTGGTGGTATCCTACCTGT+AGG | + | 43134:16103-16122 | MS.gene96684:CDS | 45.0% |
| ! | CCAATCCTTCGTAGTGGTTT+TGG | + | 43134:15693-15712 | MS.gene96684:intron | 45.0% |
| ! | CCTGAACCTTGGTCTTCATT+TGG | - | 43134:15117-15136 | MS.gene96684:intergenic | 45.0% |
| ! | GACCTTTTGCTCAAGCTCAT+GGG | + | 43134:15572-15591 | MS.gene96684:intron | 45.0% |
| ! | GGCATTCAACACGTTCTAGA+GGG | - | 43134:15752-15771 | MS.gene96684:intergenic | 45.0% |
| ! | GTCGCTTGAAGAGGAGTTTT+TGG | + | 43134:15981-16000 | MS.gene96684:CDS | 45.0% |
| ! | TGACCTTTTGCTCAAGCTCA+TGG | + | 43134:15571-15590 | MS.gene96684:intron | 45.0% |
| ! | TGCTGAGAAGGAGTACGTTT+GGG | + | 43134:15350-15369 | MS.gene96684:CDS | 45.0% |
| !! | AGGGTTGATAAGAATCCTGG+TGG | - | 43134:15773-15792 | MS.gene96684:intergenic | 45.0% |
| !! | CGGTGACATTGTTGATGGTT+TGG | + | 43134:16068-16087 | MS.gene96684:CDS | 45.0% |
| !! | CTTTGGTGCTTACTACTGCA+AGG | + | 43134:16149-16168 | MS.gene96684:CDS | 45.0% |
| !! | GGTTTTATGGTTGTTGAGGC+TGG | + | 43134:15281-15300 | MS.gene96684:intron | 45.0% |
| !! | GTCAGGGTTGATAAGAATCC+TGG | - | 43134:15776-15795 | MS.gene96684:intergenic | 45.0% |
| !! | TGATCGAGTTGACTGATGAC+AGG | + | 43134:15397-15416 | MS.gene96684:CDS | 45.0% |
| !!! | GAAGAGGAGTTTTTGGTTGC+TGG | + | 43134:15988-16007 | MS.gene96684:CDS | 45.0% |
| !!! | TTTGTTTTATTTTATATTAT+CGG | + | 43134:15464-15483 | MS.gene96684:intron | 5.0% |
| AATTCGACCGTCGCTTGAAG+AGG | + | 43134:15972-15991 | MS.gene96684:CDS | 50.0% | |
| AGAACGTGTTGAATGCCACC+AGG | + | 43134:15755-15774 | MS.gene96684:intron | 50.0% | |
| CGGTCAGTTGTCTCATGGAT+TGG | + | 43134:15484-15503 | MS.gene96684:intron | 50.0% | |
| GAACGGTATGACCCAACACT+CGG | - | 43134:15067-15086 | MS.gene96684:intergenic | 50.0% | |
| GACTGGGATTTCTGCTGAGA+AGG | + | 43134:15338-15357 | MS.gene96684:CDS | 50.0% | |
| GCAAGATTGGGGACGTTTGT+GGG | + | 43134:15179-15198 | MS.gene96684:CDS | 50.0% | |
| TCAAGCGACGGTCGAATTCT+TGG | - | 43134:15970-15989 | MS.gene96684:intergenic | 50.0% | |
| TCCAGCCGAAACTAAGGGAA+GGG | + | 43134:15008-15027 | MS.gene96684:CDS | 50.0% | |
| TGACTGCCAATCCTTCGTAG+TGG | + | 43134:15687-15706 | MS.gene96684:intron | 50.0% | |
| TGAGCAAACATCCCCAATGC+CGG | + | 43134:15936-15955 | MS.gene96684:CDS | 50.0% | |
| TGGTTGAGGGTGATGATTGG+TGG | + | 43134:16088-16107 | MS.gene96684:CDS | 50.0% | |
| TTCCAGCCGAAACTAAGGGA+AGG | + | 43134:15007-15026 | MS.gene96684:CDS | 50.0% | |
| TTGGACCAATCACCGGCATT+GGG | - | 43134:15951-15970 | MS.gene96684:intergenic | 50.0% | |
| ! | CTGCTGAGAAGGAGTACGTT+TGG | + | 43134:15349-15368 | MS.gene96684:CDS | 50.0% |
| ! | GAGAAGGAGTACGTTTGGGA+TGG | + | 43134:15354-15373 | MS.gene96684:CDS | 50.0% |
| !! | AGAGGTGTTACACCCGACTT+TGG | + | 43134:16132-16151 | MS.gene96684:CDS | 50.0% |
| ACATCCCCAATGCCGGTGAT+TGG | + | 43134:15943-15962 | MS.gene96684:CDS | 55.0% | |
| CCAGCCGAAACTAAGGGAAG+GGG | + | 43134:15009-15028 | MS.gene96684:CDS | 55.0% | |
| CGCAAGATTGGGGACGTTTG+TGG | + | 43134:15178-15197 | MS.gene96684:CDS | 55.0% | |
| CTTGGACCAATCACCGGCAT+TGG | - | 43134:15952-15971 | MS.gene96684:intergenic | 55.0% | |
| GCACACTCAACCTTGCCACT+GGG | - | 43134:15533-15552 | MS.gene96684:intergenic | 55.0% | |
| TGCACACTCAACCTTGCCAC+TGG | - | 43134:15534-15553 | MS.gene96684:intergenic | 55.0% | |
| TGCTGGTCATAGGGTGAGCT+TGG | + | 43134:16005-16024 | MS.gene96684:CDS | 55.0% | |
| TGGACCAATCACCGGCATTG+GGG | - | 43134:15950-15969 | MS.gene96684:intergenic | 55.0% | |
| ! | ATCTGTGTCGGCGATGGTGA+TGG | + | 43134:16300-16319 | MS.gene96684:CDS | 55.0% |
| ! | GGAGTACGTTTGGGATGGCA+AGG | + | 43134:15359-15378 | MS.gene96684:CDS | 55.0% |
| ! | GTGAAGATCTGTGTCGGCGA+TGG | + | 43134:16294-16313 | MS.gene96684:CDS | 55.0% |
| ! | TCTGTGTCGGCGATGGTGAT+GGG | + | 43134:16301-16320 | MS.gene96684:CDS | 55.0% |
| CCCCTTCCCTTAGTTTCGGC+TGG | - | 43134:15012-15031 | MS.gene96684:intergenic | 60.0% | |
| CGTGTGGTTGTGTTGCCCAG+TGG | + | 43134:15515-15534 | MS.gene96684:intron | 60.0% | |
| GGTTGTGTTGCCCAGTGGCA+AGG | + | 43134:15520-15539 | MS.gene96684:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43134 | gene | 14983 | 16404 | 14983 | ID=MS.gene96684 |
| 43134 | mRNA | 14983 | 16404 | 14983 | ID=MS.gene96684.t1;Parent=MS.gene96684 |
| 43134 | exon | 14983 | 15229 | 14983 | ID=MS.gene96684.t1.exon1;Parent=MS.gene96684.t1 |
| 43134 | CDS | 14983 | 15229 | 14983 | ID=cds.MS.gene96684.t1;Parent=MS.gene96684.t1 |
| 43134 | exon | 15322 | 15418 | 15322 | ID=MS.gene96684.t1.exon2;Parent=MS.gene96684.t1 |
| 43134 | CDS | 15322 | 15418 | 15322 | ID=cds.MS.gene96684.t1;Parent=MS.gene96684.t1 |
| 43134 | exon | 15777 | 15824 | 15777 | ID=MS.gene96684.t1.exon3;Parent=MS.gene96684.t1 |
| 43134 | CDS | 15777 | 15824 | 15777 | ID=cds.MS.gene96684.t1;Parent=MS.gene96684.t1 |
| 43134 | exon | 15918 | 16205 | 15918 | ID=MS.gene96684.t1.exon4;Parent=MS.gene96684.t1 |
| 43134 | CDS | 15918 | 16205 | 15918 | ID=cds.MS.gene96684.t1;Parent=MS.gene96684.t1 |
| 43134 | exon | 16287 | 16404 | 16287 | ID=MS.gene96684.t1.exon5;Parent=MS.gene96684.t1 |
| 43134 | CDS | 16287 | 16404 | 16287 | ID=cds.MS.gene96684.t1;Parent=MS.gene96684.t1 |
| Gene Sequence |
| Protein sequence |
