Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96748.t1 | XP_003591058.1 | 93.3 | 297 | 8 | 2 | 1 | 288 | 1 | 294 | 5.50E-149 | 537 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96748.t1 | G7I7H3 | 93.3 | 297 | 8 | 2 | 1 | 288 | 1 | 294 | 4.0e-149 | 537.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene96748 | 0.81576 | 7.84E-52 | -1.69E-46 |
| MS.gene050427 | MS.gene96748 | 0.806321 | 8.71E-50 | -1.69E-46 |
| MS.gene050574 | MS.gene96748 | 0.832725 | 8.03E-56 | -1.69E-46 |
| MS.gene055808 | MS.gene96748 | 0.853095 | 3.00E-61 | -1.69E-46 |
| MS.gene056091 | MS.gene96748 | 0.844366 | 7.90E-59 | -1.69E-46 |
| MS.gene056403 | MS.gene96748 | 0.813556 | 2.41E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene96748 | 0.810594 | 1.07E-50 | -1.69E-46 |
| MS.gene058911 | MS.gene96748 | 0.800795 | 1.22E-48 | -1.69E-46 |
| MS.gene06001 | MS.gene96748 | 0.819215 | 1.31E-52 | -1.69E-46 |
| MS.gene060830 | MS.gene96748 | 0.822912 | 1.84E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96748.t1 | MTR_1g082380 | 93.266 | 297 | 8 | 2 | 1 | 288 | 1 | 294 | 0.0 | 561 |
| MS.gene96748.t1 | MTR_1g082380 | 92.308 | 247 | 7 | 2 | 1 | 238 | 1 | 244 | 3.34e-165 | 458 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96748.t1 | AT5G27395 | 53.199 | 297 | 122 | 5 | 1 | 283 | 1 | 294 | 4.36e-106 | 310 |
| MS.gene96748.t1 | AT5G27395 | 60.417 | 240 | 92 | 2 | 45 | 283 | 74 | 311 | 3.62e-105 | 309 |
Find 49 sgRNAs with CRISPR-Local
Find 371 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGATTACCCTTGAGATTT+TGG | 0.137011 | 1.1:-60956306 | MS.gene96748:CDS |
| CTTTCTATCATTCATGAAAA+TGG | 0.162993 | 1.1:+60960842 | None:intergenic |
| CTACATGGAGCAAGGTTTAT+TGG | 0.243157 | 1.1:-60956989 | MS.gene96748:CDS |
| AGGTTCTTGTCCGTGATATA+TGG | 0.262057 | 1.1:-60955441 | MS.gene96748:CDS |
| TGAGATAACTACGATGCTTT+TGG | 0.269544 | 1.1:+60955358 | None:intergenic |
| TCTTAACCTTGCAATGGTAT+AGG | 0.312912 | 1.1:+60958482 | None:intergenic |
| TACATGGAGCAAGGTTTATT+GGG | 0.326398 | 1.1:-60956988 | MS.gene96748:CDS |
| TAAGGTTCATAGATAATTCC+TGG | 0.354644 | 1.1:+60959300 | None:intergenic |
| ACAATATTCATCCCATCTTC+TGG | 0.358168 | 1.1:-60961056 | MS.gene96748:CDS |
| ATAGGGCGGACTTGTGCATT+AGG | 0.363063 | 1.1:+60960792 | None:intergenic |
| CTCGTGAGAAAATCCCATTT+TGG | 0.371900 | 1.1:-60959272 | MS.gene96748:CDS |
| CAAAGACGCCAGTATGATCT+AGG | 0.373303 | 1.1:+60955394 | None:intergenic |
| ACGAACTCTGCGTGCTCGTA+TGG | 0.416956 | 1.1:-60956940 | MS.gene96748:intron |
| CGTTTCTCCCTAGATCATAC+TGG | 0.420505 | 1.1:-60955402 | MS.gene96748:CDS |
| GAGCAAGGTTTATTGGGAAA+TGG | 0.425014 | 1.1:-60956982 | MS.gene96748:CDS |
| TTTGAAGCATATGACTCAAA+AGG | 0.457081 | 1.1:-60956159 | MS.gene96748:CDS |
| AGATCATACTGGCGTCTTTG+TGG | 0.460552 | 1.1:-60955391 | MS.gene96748:CDS |
| ATAAACACACTTATAGCTAA+TGG | 0.463177 | 1.1:-60957198 | MS.gene96748:CDS |
| CAATATTCATCCCATCTTCT+GGG | 0.465219 | 1.1:-60961055 | MS.gene96748:CDS |
| TTCTGCAGCTACCCAGAAGA+TGG | 0.468511 | 1.1:+60961044 | None:intergenic |
| ATGGTGACAAACACTCATTA+AGG | 0.473691 | 1.1:-60957179 | MS.gene96748:CDS |
| AGAGTTCGTATCAAAACAAC+GGG | 0.491166 | 1.1:+60956954 | None:intergenic |
| GATGTTCACTAGAAGTGGTT+GGG | 0.506017 | 1.1:-60958894 | MS.gene96748:CDS |
| AGATAATTCCTGGACTTGAC+AGG | 0.515119 | 1.1:+60959310 | None:intergenic |
| TCAAAAGGTTCTGTTGTCGC+TGG | 0.516079 | 1.1:-60956144 | MS.gene96748:CDS |
| AACGAAAAGCGACTTAATGA+TGG | 0.516876 | 1.1:-60958867 | MS.gene96748:CDS |
| CAGATTTGCCTGTCAAGTCC+AGG | 0.517112 | 1.1:-60959318 | MS.gene96748:CDS |
| CATGTTTAGCCAAAATCTCA+AGG | 0.543474 | 1.1:+60956297 | None:intergenic |
| GGATGTTCACTAGAAGTGGT+TGG | 0.545253 | 1.1:-60958895 | MS.gene96748:CDS |
| TAATGCACAAGTCCGCCCTA+TGG | 0.550378 | 1.1:-60960790 | MS.gene96748:intron |
| ATCAGGATGTTCACTAGAAG+TGG | 0.562937 | 1.1:-60958899 | MS.gene96748:intron |
| TTTGACATTTCGATCTACAA+TGG | 0.565734 | 1.1:-60960972 | MS.gene96748:intron |
| AGAAGCGTTTGATAAAACAT+TGG | 0.580099 | 1.1:+60961015 | None:intergenic |
| TGATATATGGATATTTGAGA+AGG | 0.584780 | 1.1:-60955428 | MS.gene96748:CDS |
| AAAGAAACAGTTCTATCTAG+AGG | 0.590191 | 1.1:-60958445 | MS.gene96748:CDS |
| TCTGCAGCTACCCAGAAGAT+GGG | 0.592557 | 1.1:+60961045 | None:intergenic |
| AGAGGCTATCAGTATGTACA+AGG | 0.607682 | 1.1:-60958427 | MS.gene96748:CDS |
| CATACTGGCGTCTTTGTGGA+CGG | 0.608607 | 1.1:-60955387 | MS.gene96748:CDS |
| TTAAAGTAAGAGAAACTACA+TGG | 0.609989 | 1.1:-60957004 | MS.gene96748:CDS |
| AAGAGAAACTACATGGAGCA+AGG | 0.613968 | 1.1:-60956997 | MS.gene96748:CDS |
| TCTCAAATATCCATATATCA+CGG | 0.619706 | 1.1:+60955431 | None:intergenic |
| AAAGACGCCAGTATGATCTA+GGG | 0.622028 | 1.1:+60955395 | None:intergenic |
| AAAATGCCTATACCATTGCA+AGG | 0.627691 | 1.1:-60958488 | MS.gene96748:CDS |
| ATGTTTAGCCAAAATCTCAA+GGG | 0.653343 | 1.1:+60956298 | None:intergenic |
| CAGAGTTCGTATCAAAACAA+CGG | 0.673005 | 1.1:+60956953 | None:intergenic |
| GAAAAGCGACTTAATGATGG+AGG | 0.681182 | 1.1:-60958864 | MS.gene96748:intron |
| AGAAGATGGGATGAATATTG+TGG | 0.692349 | 1.1:+60961058 | None:intergenic |
| GGCTATCAGTATGTACAAGG+AGG | 0.702267 | 1.1:-60958424 | MS.gene96748:intron |
| TAAGAGAACCTACCATAGGG+CGG | 0.722190 | 1.1:+60960778 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTATTAATTTAATTT+GGG | - | chr1.1:60958486-60958505 | MS.gene96748:CDS | 0.0% |
| !!! | TTTTTTTTTTTTTTTAATTT+TGG | - | chr1.1:60958610-60958629 | MS.gene96748:intron | 0.0% |
| !! | AAAAAAAAAAAGTAAAATAC+GGG | + | chr1.1:60958595-60958614 | None:intergenic | 10.0% |
| !! | TCTATTAAAGAATATTATAA+TGG | + | chr1.1:60957028-60957047 | None:intergenic | 10.0% |
| !!! | AATTTACTTAATAAATTTTG+TGG | - | chr1.1:60959070-60959089 | MS.gene96748:intron | 10.0% |
| !!! | AATTTATATTTAATTTCTTG+TGG | - | chr1.1:60960859-60960878 | MS.gene96748:intron | 10.0% |
| !!! | AGTATTTTTTATTTCTTTTT+AGG | + | chr1.1:60957313-60957332 | None:intergenic | 10.0% |
| !!! | ATATATTTTATCTATGATTT+TGG | + | chr1.1:60956207-60956226 | None:intergenic | 10.0% |
| !!! | ATTATTTTAATCATTGATTA+AGG | - | chr1.1:60956548-60956567 | MS.gene96748:intron | 10.0% |
| !!! | TATATTTTATCTATGATTTT+GGG | + | chr1.1:60956206-60956225 | None:intergenic | 10.0% |
| !!! | TTTTCTATATTATTGTTTTA+TGG | - | chr1.1:60960094-60960113 | MS.gene96748:intron | 10.0% |
| !!! | TTTTTTTGACAATATATTAA+AGG | - | chr1.1:60956119-60956138 | MS.gene96748:intron | 10.0% |
| !! | AAAAAAAAAAGTAAAATACG+GGG | + | chr1.1:60958594-60958613 | None:intergenic | 15.0% |
| !! | AAAACAAATAAAATCAATCT+AGG | - | chr1.1:60957061-60957080 | MS.gene96748:intron | 15.0% |
| !! | AAATATACCAACAAAATAAT+TGG | + | chr1.1:60956652-60956671 | None:intergenic | 15.0% |
| !! | AATCATGTATAACAATATAT+GGG | + | chr1.1:60957336-60957355 | None:intergenic | 15.0% |
| !! | GTTGAGAAAATAATTTATAT+TGG | + | chr1.1:60960974-60960993 | None:intergenic | 15.0% |
| !! | TATTAATTAGAAAATTAACG+AGG | - | chr1.1:60958277-60958296 | MS.gene96748:intron | 15.0% |
| !!! | AAAAAACCGATTTTTAAAAT+AGG | + | chr1.1:60958566-60958585 | None:intergenic | 15.0% |
| !!! | AAAAACCGATTTTTAAAATA+GGG | + | chr1.1:60958565-60958584 | None:intergenic | 15.0% |
| !!! | ATTATGATTTTTTTTGCTTT+TGG | - | chr1.1:60955556-60955575 | MS.gene96748:intron | 15.0% |
| !!! | ATTCTGAAAAAAAGTAAAAT+AGG | - | chr1.1:60958814-60958833 | MS.gene96748:intron | 15.0% |
| !!! | GTTTTCATAAATTATCTTAA+AGG | + | chr1.1:60955817-60955836 | None:intergenic | 15.0% |
| !!! | TATTTTCAAATTATGTAATG+TGG | + | chr1.1:60960064-60960083 | None:intergenic | 15.0% |
| !!! | TTATGATTTTTTTTGCTTTT+GGG | - | chr1.1:60955557-60955576 | MS.gene96748:intron | 15.0% |
| !!! | TTCTGAAAAAAAGTAAAATA+GGG | - | chr1.1:60958815-60958834 | MS.gene96748:intron | 15.0% |
| !!! | TTTACTTTTTTTCAGAATTT+TGG | + | chr1.1:60958812-60958831 | None:intergenic | 15.0% |
| !!! | TTTTAAAAATCGGTTTTTTT+TGG | - | chr1.1:60958567-60958586 | MS.gene96748:intron | 15.0% |
| !! | AAAAACAATTGTTACATAAG+AGG | + | chr1.1:60957005-60957024 | None:intergenic | 20.0% |
| !! | AAAACAATTGTTACATAAGA+GGG | + | chr1.1:60957004-60957023 | None:intergenic | 20.0% |
| !! | AAACAAAACTCTGATAATTA+TGG | + | chr1.1:60959432-60959451 | None:intergenic | 20.0% |
| !! | AACTATTATGAAAGATTTAG+AGG | - | chr1.1:60960694-60960713 | MS.gene96748:intron | 20.0% |
| !! | ACATTATTGAAATCAAAACT+AGG | - | chr1.1:60958303-60958322 | MS.gene96748:intron | 20.0% |
| !! | ATACTATTTAGAAAAACACT+AGG | + | chr1.1:60957788-60957807 | None:intergenic | 20.0% |
| !! | ATGAATATAGAATACAAGAA+GGG | + | chr1.1:60956626-60956645 | None:intergenic | 20.0% |
| !! | ATTATTACATAGACATAGTT+AGG | + | chr1.1:60957699-60957718 | None:intergenic | 20.0% |
| !! | CAATACAATAACTACAAATT+GGG | + | chr1.1:60955966-60955985 | None:intergenic | 20.0% |
| !! | CATTATTGAAATCAAAACTA+GGG | - | chr1.1:60958304-60958323 | MS.gene96748:intron | 20.0% |
| !! | GAATCATGTATAACAATATA+TGG | + | chr1.1:60957337-60957356 | None:intergenic | 20.0% |
| !! | GAGAAAATAATTTATATTGG+TGG | + | chr1.1:60960971-60960990 | None:intergenic | 20.0% |
| !! | GTATGGAATACAAAATATAA+CGG | + | chr1.1:60958090-60958109 | None:intergenic | 20.0% |
| !! | TATGAATATAGAATACAAGA+AGG | + | chr1.1:60956627-60956646 | None:intergenic | 20.0% |
| !! | TCTATTTCATAGAATAATTG+TGG | + | chr1.1:60960837-60960856 | None:intergenic | 20.0% |
| !! | TCTGAAAAAAAGTAAAATAG+GGG | - | chr1.1:60958816-60958835 | MS.gene96748:intron | 20.0% |
| !! | TGATCCTATATAATATGAAT+TGG | - | chr1.1:60959924-60959943 | MS.gene96748:intron | 20.0% |
| !! | TGTAAATTGTGTTATATGAA+TGG | + | chr1.1:60956458-60956477 | None:intergenic | 20.0% |
| !! | TTACTGAAAATTTATATCCT+TGG | - | chr1.1:60960235-60960254 | MS.gene96748:intron | 20.0% |
| !! | TTGGATTAATGAAATTTACA+AGG | - | chr1.1:60955983-60956002 | MS.gene96748:intron | 20.0% |
| !!! | AAAACCGATTTTTAAAATAG+GGG | + | chr1.1:60958564-60958583 | None:intergenic | 20.0% |
| !!! | AAATAAATGGTCTATCTTTT+GGG | + | chr1.1:60958438-60958457 | None:intergenic | 20.0% |
| !!! | AACATTTTTATGAAAATAGG+GGG | - | chr1.1:60958848-60958867 | MS.gene96748:intron | 20.0% |
| !!! | ACCAACATTTTTATGAAAAT+AGG | - | chr1.1:60958845-60958864 | MS.gene96748:intron | 20.0% |
| !!! | CAACATTTTTATGAAAATAG+GGG | - | chr1.1:60958847-60958866 | MS.gene96748:intron | 20.0% |
| !!! | CCAACATTTTTATGAAAATA+GGG | - | chr1.1:60958846-60958865 | MS.gene96748:intron | 20.0% |
| !!! | GCTGTTTTTTAATTCTTTAT+AGG | - | chr1.1:60959150-60959169 | MS.gene96748:intron | 20.0% |
| !!! | GTATATTTGAATTGATTTAC+TGG | - | chr1.1:60956664-60956683 | MS.gene96748:intron | 20.0% |
| !!! | TAAATAAATGGTCTATCTTT+TGG | + | chr1.1:60958439-60958458 | None:intergenic | 20.0% |
| !!! | TAAGTTTTCATATCTTTTTG+TGG | - | chr1.1:60957371-60957390 | MS.gene96748:intron | 20.0% |
| !!! | TATGATTTTTTTTGCTTTTG+GGG | - | chr1.1:60955558-60955577 | MS.gene96748:intron | 20.0% |
| !!! | TCATATACCAATTATTTTGT+TGG | - | chr1.1:60956642-60956661 | MS.gene96748:intron | 20.0% |
| !!! | TTATGAAAACAACTTTTGAT+GGG | - | chr1.1:60955827-60955846 | MS.gene96748:intron | 20.0% |
| !!! | TTATTTTACTCTTCAATTAG+AGG | - | chr1.1:60956756-60956775 | MS.gene96748:intron | 20.0% |
| !!! | TTTATGAAAACAACTTTTGA+TGG | - | chr1.1:60955826-60955845 | MS.gene96748:intron | 20.0% |
| !!! | TTTTCATAAAAATGTTGGTT+TGG | + | chr1.1:60958844-60958863 | None:intergenic | 20.0% |
| !!! | TTTTTGAAGTTAATCTCATA+TGG | - | chr1.1:60959787-60959806 | MS.gene96748:intron | 20.0% |
| ! | AAGGCATGAAAATTAATACT+TGG | + | chr1.1:60957116-60957135 | None:intergenic | 25.0% |
| ! | AATTTATGACTACCAATTGT+TGG | - | chr1.1:60956164-60956183 | MS.gene96748:CDS | 25.0% |
| ! | ACATAGTTAGGTTTCAAAAT+TGG | + | chr1.1:60957687-60957706 | None:intergenic | 25.0% |
| ! | ACTGACATATCATTATTTCA+GGG | - | chr1.1:60957136-60957155 | MS.gene96748:intron | 25.0% |
| ! | AGTCAGAATATAAATTCGAA+TGG | - | chr1.1:60956382-60956401 | MS.gene96748:intron | 25.0% |
| ! | ATAAACACACTTATAGCTAA+TGG | - | chr1.1:60959283-60959302 | MS.gene96748:CDS | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | - | chr1.1:60955916-60955935 | MS.gene96748:intron | 25.0% |
| ! | ATAATATGTTCAAATGGCTA+AGG | + | chr1.1:60958997-60959016 | None:intergenic | 25.0% |
| ! | ATCTAATGCATTATGCTAAT+TGG | + | chr1.1:60960451-60960470 | None:intergenic | 25.0% |
| ! | ATGAGTCAAAAAATAAAGCT+TGG | + | chr1.1:60958112-60958131 | None:intergenic | 25.0% |
| ! | ATGGTTTAAGGAGATATTAA+AGG | - | chr1.1:60956090-60956109 | MS.gene96748:intron | 25.0% |
| ! | ATTAAATATGTATCCCAGAA+AGG | + | chr1.1:60959855-60959874 | None:intergenic | 25.0% |
| ! | ATTATATAGGATCATCATCA+TGG | + | chr1.1:60959918-60959937 | None:intergenic | 25.0% |
| ! | CAAAAAGCAAAATTTGATTC+AGG | + | chr1.1:60957958-60957977 | None:intergenic | 25.0% |
| ! | CAAATCTAGAGGTAAATAAA+TGG | + | chr1.1:60958451-60958470 | None:intergenic | 25.0% |
| ! | CATAGTTAGGTTTCAAAATT+GGG | + | chr1.1:60957686-60957705 | None:intergenic | 25.0% |
| ! | CCAATACAATAACTACAAAT+TGG | + | chr1.1:60955967-60955986 | None:intergenic | 25.0% |
| ! | CCAATTTGTAGTTATTGTAT+TGG | - | chr1.1:60955964-60955983 | MS.gene96748:intron | 25.0% |
| ! | CTAGCCAATTCATATTATAT+AGG | + | chr1.1:60959931-60959950 | None:intergenic | 25.0% |
| ! | CTGAAAAAAAGTAAAATAGG+GGG | - | chr1.1:60958817-60958836 | MS.gene96748:intron | 25.0% |
| ! | CTTTCTATCATTCATGAAAA+TGG | + | chr1.1:60955642-60955661 | None:intergenic | 25.0% |
| ! | GAAATAATGATATGTCAGTA+AGG | + | chr1.1:60957135-60957154 | None:intergenic | 25.0% |
| ! | GCAAAAATATGTCTAATAAG+CGG | - | chr1.1:60958725-60958744 | MS.gene96748:intron | 25.0% |
| ! | TAATAGCGTAAATTAGTAAC+AGG | + | chr1.1:60958262-60958281 | None:intergenic | 25.0% |
| ! | TACAATGTGCAAAATATAAC+TGG | - | chr1.1:60957908-60957927 | MS.gene96748:intron | 25.0% |
| ! | TACTGACATATCATTATTTC+AGG | - | chr1.1:60957135-60957154 | MS.gene96748:intron | 25.0% |
| ! | TAGAAAAGATGGTAGAAAAT+AGG | - | chr1.1:60960570-60960589 | MS.gene96748:intron | 25.0% |
| ! | TATGCTTTACACGTTAAAAT+TGG | - | chr1.1:60960207-60960226 | MS.gene96748:intron | 25.0% |
| ! | TCAAAAAATAAAGCTTGGTA+TGG | + | chr1.1:60958107-60958126 | None:intergenic | 25.0% |
| ! | TCGTATTTCATATACACATT+TGG | + | chr1.1:60959627-60959646 | None:intergenic | 25.0% |
| ! | TCTATGATGTTTCATATATC+AGG | - | chr1.1:60957565-60957584 | MS.gene96748:intron | 25.0% |
| ! | TCTCAAATATCCATATATCA+CGG | + | chr1.1:60961053-60961072 | None:intergenic | 25.0% |
| ! | TCTTTCATAATAGTTTCTCT+AGG | + | chr1.1:60960689-60960708 | None:intergenic | 25.0% |
| ! | TGATATATGGATATTTGAGA+AGG | - | chr1.1:60961053-60961072 | MS.gene96748:CDS | 25.0% |
| ! | TTAAAGTAAGAGAAACTACA+TGG | - | chr1.1:60959477-60959496 | MS.gene96748:intron | 25.0% |
| ! | TTCTTACTAGTTATGGTTTA+AGG | - | chr1.1:60956078-60956097 | MS.gene96748:intron | 25.0% |
| !! | AAATATAACTGGTTCTTCTA+TGG | - | chr1.1:60957919-60957938 | MS.gene96748:intron | 25.0% |
| !! | AAGGAAAGGAAATTTTATCA+TGG | + | chr1.1:60959255-60959274 | None:intergenic | 25.0% |
| !! | ACATTTTTATGAAAATAGGG+GGG | - | chr1.1:60958849-60958868 | MS.gene96748:intron | 25.0% |
| !! | CCCTATTTTCATAAAAATGT+TGG | + | chr1.1:60958849-60958868 | None:intergenic | 25.0% |
| !! | GTTTAAGTTCTTACTAGTTA+TGG | - | chr1.1:60956071-60956090 | MS.gene96748:intron | 25.0% |
| !! | TAATGAGTTGGATTCAAATA+TGG | - | chr1.1:60960718-60960737 | MS.gene96748:intron | 25.0% |
| !! | TTATATTGGTGGTAAAGAAA+TGG | + | chr1.1:60960960-60960979 | None:intergenic | 25.0% |
| !!! | AAACCGATTTTTAAAATAGG+GGG | + | chr1.1:60958563-60958582 | None:intergenic | 25.0% |
| !!! | GTTTTAAACAAGGTTGATTT+TGG | + | chr1.1:60958332-60958351 | None:intergenic | 25.0% |
| !!! | TAGACATATTTTTGCTAACA+TGG | + | chr1.1:60958720-60958739 | None:intergenic | 25.0% |
| !!! | TTCATGTATTTTTAACCACT+AGG | - | chr1.1:60959173-60959192 | MS.gene96748:intron | 25.0% |
| !!! | TTTGCTTCATTTTGTTTCTT+TGG | - | chr1.1:60959120-60959139 | MS.gene96748:intron | 25.0% |
| AAAATTCGCAATTGAAGTGA+AGG | - | chr1.1:60956716-60956735 | MS.gene96748:intron | 30.0% | |
| AAAGAAACAGTTCTATCTAG+AGG | - | chr1.1:60958036-60958055 | MS.gene96748:intron | 30.0% | |
| AAATTCGCAATTGAAGTGAA+GGG | - | chr1.1:60956717-60956736 | MS.gene96748:intron | 30.0% | |
| AACTTTATAAGTATGCATCC+TGG | - | chr1.1:60957528-60957547 | MS.gene96748:intron | 30.0% | |
| AATTTAAGAGAACCTACCAT+AGG | + | chr1.1:60955710-60955729 | None:intergenic | 30.0% | |
| ACAGTTCATAGCTACAATTA+AGG | - | chr1.1:60956799-60956818 | MS.gene96748:intron | 30.0% | |
| ACTTATTTGAGCTTATCTAC+TGG | - | chr1.1:60955786-60955805 | MS.gene96748:intron | 30.0% | |
| AGCAAATCTCTGTAATCAAA+AGG | + | chr1.1:60959106-60959125 | None:intergenic | 30.0% | |
| AGGCTGATAATATGTTCAAA+TGG | + | chr1.1:60959003-60959022 | None:intergenic | 30.0% | |
| ATACTTGGTCTGCAAATAAA+CGG | + | chr1.1:60957101-60957120 | None:intergenic | 30.0% | |
| ATATGCTTCAAATTTCTGCA+AGG | + | chr1.1:60960314-60960333 | None:intergenic | 30.0% | |
| ATCATGATAAATTGTCCTAG+TGG | + | chr1.1:60959191-60959210 | None:intergenic | 30.0% | |
| ATGATACTACTCAATCCAAT+CGG | + | chr1.1:60959716-60959735 | None:intergenic | 30.0% | |
| ATGTTTAGCCAAAATCTCAA+GGG | + | chr1.1:60960186-60960205 | None:intergenic | 30.0% | |
| ATTGATTAAGGTTATCCAAG+TGG | - | chr1.1:60956560-60956579 | MS.gene96748:intron | 30.0% | |
| ATTGCAAGGTTAAGAAAAAC+AGG | - | chr1.1:60958007-60958026 | MS.gene96748:intron | 30.0% | |
| ATTTAAGAGAACCTACCATA+GGG | + | chr1.1:60955709-60955728 | None:intergenic | 30.0% | |
| ATTTATGTATCTGCTTCATC+AGG | + | chr1.1:60959023-60959042 | None:intergenic | 30.0% | |
| CACTGGATAAAATCACAAAA+AGG | + | chr1.1:60959368-60959387 | None:intergenic | 30.0% | |
| CATAAGTTGTTTATCCAAAC+AGG | - | chr1.1:60955915-60955934 | MS.gene96748:intron | 30.0% | |
| CTAGGACAATTTATCATGAT+TGG | - | chr1.1:60959191-60959210 | MS.gene96748:intron | 30.0% | |
| GAAACCAGTACTTGAATAAA+GGG | + | chr1.1:60961009-60961028 | None:intergenic | 30.0% | |
| GCTACAATCAATAAACTACA+TGG | - | chr1.1:60958406-60958425 | MS.gene96748:intron | 30.0% | |
| TAAGGTTCATAGATAATTCC+TGG | + | chr1.1:60957184-60957203 | None:intergenic | 30.0% | |
| TAGAAATTATAGAGAAGACC+AGG | + | chr1.1:60957549-60957568 | None:intergenic | 30.0% | |
| TAGTATCATTACCTTTGCTA+GGG | - | chr1.1:60959727-60959746 | MS.gene96748:intron | 30.0% | |
| TCTTTGTCTCATATAGTAGA+CGG | - | chr1.1:60960497-60960516 | MS.gene96748:intron | 30.0% | |
| TGATGAAGCAGATACATAAA+TGG | - | chr1.1:60959022-60959041 | MS.gene96748:intron | 30.0% | |
| TGGTTTATGATCGAACATTA+TGG | - | chr1.1:60960738-60960757 | MS.gene96748:intron | 30.0% | |
| TTCGCAAAAATAATACACAC+TGG | + | chr1.1:60959385-60959404 | None:intergenic | 30.0% | |
| TTGTCACGTCATAAATGAAT+AGG | + | chr1.1:60958674-60958693 | None:intergenic | 30.0% | |
| TTGTTGTCAATGTCTTTCTT+AGG | - | chr1.1:60955604-60955623 | MS.gene96748:intron | 30.0% | |
| TTTATAAGTATGCACCCATT+AGG | - | chr1.1:60958375-60958394 | MS.gene96748:intron | 30.0% | |
| TTTGACATTTCGATCTACAA+TGG | - | chr1.1:60955509-60955528 | MS.gene96748:intron | 30.0% | |
| ! | AACCTAACCTTTTCCAAAAT+GGG | + | chr1.1:60957225-60957244 | None:intergenic | 30.0% |
| ! | AACTTGATAGTTGATACAGT+GGG | - | chr1.1:60960919-60960938 | MS.gene96748:intron | 30.0% |
| ! | ATTGCGAATTTTGAACAGAA+AGG | + | chr1.1:60956708-60956727 | None:intergenic | 30.0% |
| ! | GTTTCAAAACTGCATCTTTT+AGG | + | chr1.1:60958924-60958943 | None:intergenic | 30.0% |
| ! | TCTGCTAATTTTCCAACAAT+TGG | + | chr1.1:60956179-60956198 | None:intergenic | 30.0% |
| ! | TGTTTTTCTTAACCTTGCAA+TGG | + | chr1.1:60958008-60958027 | None:intergenic | 30.0% |
| ! | TTTGAAGCATATGACTCAAA+AGG | - | chr1.1:60960322-60960341 | MS.gene96748:intron | 30.0% |
| !! | AGAAAATCCCATTTTGGAAA+AGG | - | chr1.1:60957215-60957234 | MS.gene96748:intron | 30.0% |
| !! | AGAAGCGTTTGATAAAACAT+TGG | + | chr1.1:60955469-60955488 | None:intergenic | 30.0% |
| !! | CTTTAGTTGTTGTTTGTTGT+TGG | + | chr1.1:60958139-60958158 | None:intergenic | 30.0% |
| !! | TCTGCAAATAAACGGATTAT+AGG | + | chr1.1:60957093-60957112 | None:intergenic | 30.0% |
| !! | TTTGATTTGATGTATCCTTC+TGG | + | chr1.1:60958354-60958373 | None:intergenic | 30.0% |
| !!! | AAAGGCTTTAAATGCACTTT+TGG | + | chr1.1:60958875-60958894 | None:intergenic | 30.0% |
| !!! | TATCCTTCTGGTTTTAAACA+AGG | + | chr1.1:60958342-60958361 | None:intergenic | 30.0% |
| !!! | TTTTTTGCTTTTGGGGTTTT+GGG | - | chr1.1:60955565-60955584 | MS.gene96748:intron | 30.0% |
| !!! | TTTTTTTGCTTTTGGGGTTT+TGG | - | chr1.1:60955564-60955583 | MS.gene96748:intron | 30.0% |
| AAAAATAGACGAGCAAAGCT+CGG | + | chr1.1:60956048-60956067 | None:intergenic | 35.0% | |
| AAAATGCCTATACCATTGCA+AGG | - | chr1.1:60957993-60958012 | MS.gene96748:intron | 35.0% | |
| AACGAAAAGCGACTTAATGA+TGG | - | chr1.1:60957614-60957633 | MS.gene96748:intron | 35.0% | |
| AAGATTGGGGGCAAATAAAA+AGG | + | chr1.1:60957753-60957772 | None:intergenic | 35.0% | |
| AAGTGAAGGGTTTCTTCTAA+AGG | - | chr1.1:60956730-60956749 | MS.gene96748:intron | 35.0% | |
| ACAATATTCATCCCATCTTC+TGG | - | chr1.1:60955425-60955444 | MS.gene96748:CDS | 35.0% | |
| ACCATCCATTGAAAAGACAA+AGG | + | chr1.1:60956917-60956936 | None:intergenic | 35.0% | |
| ACGATATATGTTGTGTGTGT+TGG | - | chr1.1:60956967-60956986 | MS.gene96748:CDS | 35.0% | |
| AGAAGATGGGATGAATATTG+TGG | + | chr1.1:60955426-60955445 | None:intergenic | 35.0% | |
| AGAGTTCGTATCAAAACAAC+GGG | + | chr1.1:60959530-60959549 | None:intergenic | 35.0% | |
| AGATGGTAGAAAATAGGCTT+AGG | - | chr1.1:60960576-60960595 | MS.gene96748:intron | 35.0% | |
| AGATTGGGGGCAAATAAAAA+GGG | + | chr1.1:60957752-60957771 | None:intergenic | 35.0% | |
| AGATTTAGAGGCTAATGAGT+TGG | - | chr1.1:60960706-60960725 | MS.gene96748:intron | 35.0% | |
| AGTAACTGCAGTAGAAAAGA+TGG | - | chr1.1:60960559-60960578 | MS.gene96748:intron | 35.0% | |
| AGTATGAAGAGTAGATCAGA+TGG | - | chr1.1:60960631-60960650 | MS.gene96748:intron | 35.0% | |
| AGTGTGTTTATCTGCAGAAA+AGG | + | chr1.1:60959274-60959293 | None:intergenic | 35.0% | |
| ATAGTAGACGGGATAGAATT+AGG | - | chr1.1:60960509-60960528 | MS.gene96748:intron | 35.0% | |
| ATCTCTGTAATCAAAAGGTG+TGG | + | chr1.1:60959101-60959120 | None:intergenic | 35.0% | |
| ATGAATTGGCTAGATCTTGT+TGG | - | chr1.1:60959938-60959957 | MS.gene96748:intron | 35.0% | |
| ATGACGTGACAATGCTTATT+AGG | - | chr1.1:60958682-60958701 | MS.gene96748:intron | 35.0% | |
| ATGGTGACAAACACTCATTA+AGG | - | chr1.1:60959302-60959321 | MS.gene96748:CDS | 35.0% | |
| ATTTCTTTGTCTTTGCAGCT+TGG | - | chr1.1:60960119-60960138 | MS.gene96748:intron | 35.0% | |
| CAATATTCATCCCATCTTCT+GGG | - | chr1.1:60955426-60955445 | MS.gene96748:CDS | 35.0% | |
| CAGAGTTCGTATCAAAACAA+CGG | + | chr1.1:60959531-60959550 | None:intergenic | 35.0% | |
| CATGTTTAGCCAAAATCTCA+AGG | + | chr1.1:60960187-60960206 | None:intergenic | 35.0% | |
| CTACTCTTCATACTACATAC+TGG | + | chr1.1:60960625-60960644 | None:intergenic | 35.0% | |
| CTTTGTCTCATATAGTAGAC+GGG | - | chr1.1:60960498-60960517 | MS.gene96748:intron | 35.0% | |
| GACAAGAACCTGGAAAATAT+AGG | + | chr1.1:60961031-60961050 | None:intergenic | 35.0% | |
| GAGATAAGAAGCTAAAGCAA+TGG | + | chr1.1:60957264-60957283 | None:intergenic | 35.0% | |
| GGAAACCAGTACTTGAATAA+AGG | + | chr1.1:60961010-60961029 | None:intergenic | 35.0% | |
| GGATAAACAACTTATGTTGC+AGG | + | chr1.1:60955911-60955930 | None:intergenic | 35.0% | |
| GTAGTATCATTACCTTTGCT+AGG | - | chr1.1:60959726-60959745 | MS.gene96748:intron | 35.0% | |
| GTTTATCTGCAGAAAAGGAA+AGG | + | chr1.1:60959269-60959288 | None:intergenic | 35.0% | |
| TACATGGAGCAAGGTTTATT+GGG | - | chr1.1:60959493-60959512 | MS.gene96748:intron | 35.0% | |
| TAGCAATAAACAGACCACAA+AGG | + | chr1.1:60958955-60958974 | None:intergenic | 35.0% | |
| TATATTCTGACTATCCCATC+AGG | + | chr1.1:60956374-60956393 | None:intergenic | 35.0% | |
| TCTTAACCTTGCAATGGTAT+AGG | + | chr1.1:60958002-60958021 | None:intergenic | 35.0% | |
| TCTTGTGGCATGAATTATGT+GGG | - | chr1.1:60960874-60960893 | MS.gene96748:intron | 35.0% | |
| TGAAACATTCAACTCCTTTG+TGG | - | chr1.1:60958938-60958957 | MS.gene96748:intron | 35.0% | |
| TGCTAACATGGATATTAGTG+TGG | + | chr1.1:60958708-60958727 | None:intergenic | 35.0% | |
| TTCTTGTGGCATGAATTATG+TGG | - | chr1.1:60960873-60960892 | MS.gene96748:intron | 35.0% | |
| ! | AATACAAGAAGGGCATAAGT+GGG | + | chr1.1:60956616-60956635 | None:intergenic | 35.0% |
| ! | ACCTCTAGATTTGAAACTAG+AGG | - | chr1.1:60958458-60958477 | MS.gene96748:CDS | 35.0% |
| ! | AGTACTGAATACTGGACAAT+AGG | - | chr1.1:60957857-60957876 | MS.gene96748:intron | 35.0% |
| ! | CAACCTAACCTTTTCCAAAA+TGG | + | chr1.1:60957226-60957245 | None:intergenic | 35.0% |
| ! | CAACCTTGTTTAAAACCAGA+AGG | - | chr1.1:60958336-60958355 | MS.gene96748:intron | 35.0% |
| ! | CTTTTCAATGGATGGTAAAG+TGG | - | chr1.1:60956921-60956940 | MS.gene96748:intron | 35.0% |
| ! | GAACTTGATAGTTGATACAG+TGG | - | chr1.1:60960918-60960937 | MS.gene96748:intron | 35.0% |
| ! | TCAGATTACCCTTGAGATTT+TGG | - | chr1.1:60960175-60960194 | MS.gene96748:intron | 35.0% |
| ! | TCCTCTAGTTTCAAATCTAG+AGG | + | chr1.1:60958462-60958481 | None:intergenic | 35.0% |
| ! | TTATCATGATTGGTTCTTGC+TGG | - | chr1.1:60959201-60959220 | MS.gene96748:intron | 35.0% |
| !! | ACTGGTTTCCTATATTTTCC+AGG | - | chr1.1:60961020-60961039 | MS.gene96748:CDS | 35.0% |
| !! | ATCCCATTTTGGAAAAGGTT+AGG | - | chr1.1:60957220-60957239 | MS.gene96748:intron | 35.0% |
| !! | ATGCAGAAAGTACTGAATAC+TGG | - | chr1.1:60957849-60957868 | MS.gene96748:intron | 35.0% |
| !! | GGTCCCCCTATTTTAAAAAT+CGG | - | chr1.1:60958557-60958576 | MS.gene96748:intron | 35.0% |
| !! | TTTTTATTTGCCCCCAATCT+TGG | - | chr1.1:60957752-60957771 | MS.gene96748:intron | 35.0% |
| !!! | GCTTTGCTCGTCTATTTTTT+AGG | - | chr1.1:60956049-60956068 | MS.gene96748:intron | 35.0% |
| AAAGACGCCAGTATGATCTA+GGG | + | chr1.1:60961089-60961108 | None:intergenic | 40.0% | |
| AAGAGAAACTACATGGAGCA+AGG | - | chr1.1:60959484-60959503 | MS.gene96748:intron | 40.0% | |
| AATCATCAAGCTGTGCTGTA+TGG | - | chr1.1:60955750-60955769 | MS.gene96748:intron | 40.0% | |
| AATCGAGCAATTCTTCCACT+TGG | + | chr1.1:60956578-60956597 | None:intergenic | 40.0% | |
| ACACCTCATCTAGTGAAAAG+AGG | + | chr1.1:60958162-60958181 | None:intergenic | 40.0% | |
| ACCTCCAAAAATAGACCCTA+TGG | + | chr1.1:60959753-60959772 | None:intergenic | 40.0% | |
| AGAGGCTATCAGTATGTACA+AGG | - | chr1.1:60958054-60958073 | MS.gene96748:intron | 40.0% | |
| AGATAATTCCTGGACTTGAC+AGG | + | chr1.1:60957174-60957193 | None:intergenic | 40.0% | |
| AGCTATGAACTGTGTGTCTT+GGG | + | chr1.1:60956792-60956811 | None:intergenic | 40.0% | |
| AGGTTCTTGTCCGTGATATA+TGG | - | chr1.1:60961040-60961059 | MS.gene96748:CDS | 40.0% | |
| AGTGACCCAAAAATGAGACA+AGG | - | chr1.1:60958784-60958803 | MS.gene96748:intron | 40.0% | |
| ATAGGCCTAACAGGTTACAT+AGG | + | chr1.1:60959972-60959991 | None:intergenic | 40.0% | |
| ATATATCACGGACAAGAACC+TGG | + | chr1.1:60961041-60961060 | None:intergenic | 40.0% | |
| ATCAGGATGTTCACTAGAAG+TGG | - | chr1.1:60957582-60957601 | MS.gene96748:intron | 40.0% | |
| ATGAAGAGTAGATCAGATGG+AGG | - | chr1.1:60960634-60960653 | MS.gene96748:intron | 40.0% | |
| ATGAATGGCTCATGATGTGT+TGG | + | chr1.1:60956443-60956462 | None:intergenic | 40.0% | |
| ATGACACCATTAGAGAGAGT+TGG | - | chr1.1:60960533-60960552 | MS.gene96748:intron | 40.0% | |
| ATGACCCAAAAATGAGACGA+AGG | + | chr1.1:60958637-60958656 | None:intergenic | 40.0% | |
| ATGTAGTTGAACCCACTTAG+TGG | - | chr1.1:60960775-60960794 | MS.gene96748:intron | 40.0% | |
| CATATGTGTATCTGCTCTTC+TGG | + | chr1.1:60959995-60960014 | None:intergenic | 40.0% | |
| CCAGTACTTGAATAAAGGGT+AGG | + | chr1.1:60961005-60961024 | None:intergenic | 40.0% | |
| CCTACCCTTTATTCAAGTAC+TGG | - | chr1.1:60961002-60961021 | MS.gene96748:CDS | 40.0% | |
| CGAACACTAACAAACATGAC+AGG | + | chr1.1:60956273-60956292 | None:intergenic | 40.0% | |
| CTACATGGAGCAAGGTTTAT+TGG | - | chr1.1:60959492-60959511 | MS.gene96748:intron | 40.0% | |
| CTCTTCAATTAGAGGAAGAG+TGG | - | chr1.1:60956764-60956783 | MS.gene96748:intron | 40.0% | |
| GAAAAGCGACTTAATGATGG+AGG | - | chr1.1:60957617-60957636 | MS.gene96748:intron | 40.0% | |
| GAAAATAGGCTTAGGTGGTT+TGG | - | chr1.1:60960584-60960603 | MS.gene96748:intron | 40.0% | |
| GAGCAAGGTTTATTGGGAAA+TGG | - | chr1.1:60959499-60959518 | MS.gene96748:intron | 40.0% | |
| GATGTTCACTAGAAGTGGTT+GGG | - | chr1.1:60957587-60957606 | MS.gene96748:intron | 40.0% | |
| GCCTTGAAGACACATCAAAT+CGG | + | chr1.1:60957479-60957498 | None:intergenic | 40.0% | |
| GGGAGTGGGAGATAAAATAT+TGG | + | chr1.1:60957732-60957751 | None:intergenic | 40.0% | |
| GTGACCCAAAAATGAGACAA+GGG | - | chr1.1:60958785-60958804 | MS.gene96748:intron | 40.0% | |
| TAATCTACCATGTCCCTGTT+TGG | + | chr1.1:60955932-60955951 | None:intergenic | 40.0% | |
| TACTGGGACTTCAACAACTT+AGG | - | chr1.1:60960267-60960286 | MS.gene96748:intron | 40.0% | |
| TAGAGTTTCTCTGACCTGAT+GGG | - | chr1.1:60956357-60956376 | MS.gene96748:intron | 40.0% | |
| TAGCTATGAACTGTGTGTCT+TGG | + | chr1.1:60956793-60956812 | None:intergenic | 40.0% | |
| TATCATGGAGCCAACAAAAG+AGG | + | chr1.1:60959240-60959259 | None:intergenic | 40.0% | |
| TCAATGTCTTTCTTAGGCTG+CGG | - | chr1.1:60955610-60955629 | MS.gene96748:intron | 40.0% | |
| TGAATGGCTCATGATGTGTT+GGG | + | chr1.1:60956442-60956461 | None:intergenic | 40.0% | |
| TGACACCATTAGAGAGAGTT+GGG | - | chr1.1:60960534-60960553 | MS.gene96748:intron | 40.0% | |
| TGGTAGAAAATAGGCTTAGG+TGG | - | chr1.1:60960579-60960598 | MS.gene96748:intron | 40.0% | |
| TGTAGTTGAACCCACTTAGT+GGG | - | chr1.1:60960776-60960795 | MS.gene96748:intron | 40.0% | |
| TGTCGCTGGAGATAAAAACA+AGG | - | chr1.1:60960351-60960370 | MS.gene96748:intron | 40.0% | |
| TGTTGTGTGTGTTGGACTTT+AGG | - | chr1.1:60956975-60956994 | MS.gene96748:CDS | 40.0% | |
| TGTTTATCCAAACAGGGACA+TGG | - | chr1.1:60955922-60955941 | MS.gene96748:intron | 40.0% | |
| TTTGGGCTCAAATGCACATT+TGG | - | chr1.1:60958503-60958522 | MS.gene96748:intron | 40.0% | |
| ! | AAGCCTCTTTTCACTAGATG+AGG | - | chr1.1:60958156-60958175 | MS.gene96748:intron | 40.0% |
| ! | ACTAAGTGGGTTCAACTACA+TGG | + | chr1.1:60960776-60960795 | None:intergenic | 40.0% |
| ! | AGCAGCCTTTGTCTTTTCAA+TGG | - | chr1.1:60956909-60956928 | MS.gene96748:intron | 40.0% |
| ! | ATGAATTATGTGGGAGCATG+GGG | - | chr1.1:60960883-60960902 | MS.gene96748:intron | 40.0% |
| ! | ATTTTCTCACGAGGTTCGTA+AGG | + | chr1.1:60957202-60957221 | None:intergenic | 40.0% |
| ! | CAAAATGGGATTTTCTCACG+AGG | + | chr1.1:60957211-60957230 | None:intergenic | 40.0% |
| ! | CATGAATTATGTGGGAGCAT+GGG | - | chr1.1:60960882-60960901 | MS.gene96748:intron | 40.0% |
| ! | CTCGTGAGAAAATCCCATTT+TGG | - | chr1.1:60957209-60957228 | MS.gene96748:intron | 40.0% |
| ! | CTGAGAAGATGTTTTCCGTA+TGG | - | chr1.1:60959335-60959354 | MS.gene96748:intron | 40.0% |
| ! | GAATACAAGAAGGGCATAAG+TGG | + | chr1.1:60956617-60956636 | None:intergenic | 40.0% |
| ! | GATGTGTTGGGTTGTTCAAT+TGG | + | chr1.1:60956430-60956449 | None:intergenic | 40.0% |
| ! | GCCTTTGTCTTTTCAATGGA+TGG | - | chr1.1:60956913-60956932 | MS.gene96748:intron | 40.0% |
| ! | TGGAGAAGAAAGAGCATGAA+AGG | - | chr1.1:60956302-60956321 | MS.gene96748:CDS | 40.0% |
| ! | TTGGTCCCTTGTCTCATTTT+TGG | + | chr1.1:60958793-60958812 | None:intergenic | 40.0% |
| ! | TTGGTCCTTCGTCTCATTTT+TGG | - | chr1.1:60958629-60958648 | MS.gene96748:intron | 40.0% |
| !! | ACCGATTTGATGTGTCTTCA+AGG | - | chr1.1:60957475-60957494 | MS.gene96748:intron | 40.0% |
| !! | CAAGGATGACTTTTGTTGTG+TGG | - | chr1.1:60956001-60956020 | MS.gene96748:intron | 40.0% |
| !! | TGGTCCCTTGTCTCATTTTT+GGG | + | chr1.1:60958792-60958811 | None:intergenic | 40.0% |
| !! | TGGTCCTTCGTCTCATTTTT+GGG | - | chr1.1:60958630-60958649 | MS.gene96748:intron | 40.0% |
| !!! | TTTGCTTTTTGCTCTGCTAC+AGG | - | chr1.1:60957967-60957986 | MS.gene96748:intron | 40.0% |
| AAAGACAAAGGCTGCTCATG+TGG | + | chr1.1:60956905-60956924 | None:intergenic | 45.0% | |
| AAGTATGCACCCATTAGGTG+AGG | - | chr1.1:60958380-60958399 | MS.gene96748:intron | 45.0% | |
| AATGGTAGAGACCTCTCAAC+AGG | - | chr1.1:60956400-60956419 | MS.gene96748:intron | 45.0% | |
| ACTACCCCAACTCTCTCTAA+TGG | + | chr1.1:60960542-60960561 | None:intergenic | 45.0% | |
| AGATCATACTGGCGTCTTTG+TGG | - | chr1.1:60961090-60961109 | MS.gene96748:CDS | 45.0% | |
| AGGCTGCAATTCTCCAAGAT+TGG | + | chr1.1:60957768-60957787 | None:intergenic | 45.0% | |
| ATCCAGAGACACACACTACA+AGG | + | chr1.1:60960399-60960418 | None:intergenic | 45.0% | |
| ATCCTTGTAGTGTGTGTCTC+TGG | - | chr1.1:60960394-60960413 | MS.gene96748:intron | 45.0% | |
| ATTACCTTTGCTAGGGCCAT+AGG | - | chr1.1:60959734-60959753 | MS.gene96748:intron | 45.0% | |
| CAAAAAGGAAGCGAGCCATA+CGG | + | chr1.1:60959353-60959372 | None:intergenic | 45.0% | |
| CAAAGACGCCAGTATGATCT+AGG | + | chr1.1:60961090-60961109 | None:intergenic | 45.0% | |
| CCAACAAAAGAGGCAAACGA+AGG | + | chr1.1:60959230-60959249 | None:intergenic | 45.0% | |
| CGCTGGAGATAAAAACAAGG+AGG | - | chr1.1:60960354-60960373 | MS.gene96748:intron | 45.0% | |
| CGTTTCTCCCTAGATCATAC+TGG | - | chr1.1:60961079-60961098 | MS.gene96748:CDS | 45.0% | |
| CTAGAGTTTCTCTGACCTGA+TGG | - | chr1.1:60956356-60956375 | MS.gene96748:intron | 45.0% | |
| CTGCAATTCTCCAAGATTGG+GGG | + | chr1.1:60957765-60957784 | None:intergenic | 45.0% | |
| GAATAAAGGGTAGGACACTG+AGG | + | chr1.1:60960996-60961015 | None:intergenic | 45.0% | |
| GACACACACTACAAGGATGT+AGG | + | chr1.1:60960392-60960411 | None:intergenic | 45.0% | |
| GACACCATTAGAGAGAGTTG+GGG | - | chr1.1:60960535-60960554 | MS.gene96748:intron | 45.0% | |
| GCATGAATTATGTGGGAGCA+TGG | - | chr1.1:60960881-60960900 | MS.gene96748:intron | 45.0% | |
| GCATGCCTATGTAACCTGTT+AGG | - | chr1.1:60959964-60959983 | MS.gene96748:intron | 45.0% | |
| GCTGCAATTCTCCAAGATTG+GGG | + | chr1.1:60957766-60957785 | None:intergenic | 45.0% | |
| GCTGTGCTGTATGGTCTAAT+TGG | - | chr1.1:60955759-60955778 | MS.gene96748:intron | 45.0% | |
| GGATGTTCACTAGAAGTGGT+TGG | - | chr1.1:60957586-60957605 | MS.gene96748:intron | 45.0% | |
| GGCTATCAGTATGTACAAGG+AGG | - | chr1.1:60958057-60958076 | MS.gene96748:intron | 45.0% | |
| GGCTGCAATTCTCCAAGATT+GGG | + | chr1.1:60957767-60957786 | None:intergenic | 45.0% | |
| GGGGCAAATAAAAAGGGAGT+GGG | + | chr1.1:60957746-60957765 | None:intergenic | 45.0% | |
| GTGTATCTGCTCTTCTGGAT+AGG | + | chr1.1:60959990-60960009 | None:intergenic | 45.0% | |
| GTTAGTGTTCGTAGTCGTCT+TGG | - | chr1.1:60956282-60956301 | MS.gene96748:intron | 45.0% | |
| TAAGAGAACCTACCATAGGG+CGG | + | chr1.1:60955706-60955725 | None:intergenic | 45.0% | |
| TAGATCAGATGGAGGAGAGT+CGG | - | chr1.1:60960642-60960661 | MS.gene96748:intron | 45.0% | |
| TCAAAAGGTTCTGTTGTCGC+TGG | - | chr1.1:60960337-60960356 | MS.gene96748:intron | 45.0% | |
| TGAACCCACTTAGTGGGATA+AGG | - | chr1.1:60960782-60960801 | MS.gene96748:intron | 45.0% | |
| TGTAGCTGACCTCACCTAAT+GGG | + | chr1.1:60958392-60958411 | None:intergenic | 45.0% | |
| TTACCTTTGCTAGGGCCATA+GGG | - | chr1.1:60959735-60959754 | MS.gene96748:intron | 45.0% | |
| TTGTAGCTGACCTCACCTAA+TGG | + | chr1.1:60958393-60958412 | None:intergenic | 45.0% | |
| ! | AGGGCCATAGGGTCTATTTT+TGG | - | chr1.1:60959746-60959765 | MS.gene96748:intron | 45.0% |
| ! | CACCACCTTTTCCAGATAGA+GGG | + | chr1.1:60956335-60956354 | None:intergenic | 45.0% |
| ! | CCTTCGTTTGCCTCTTTTGT+TGG | - | chr1.1:60959227-60959246 | MS.gene96748:intron | 45.0% |
| ! | GAAGCCTTATCCCACTAAGT+GGG | + | chr1.1:60960789-60960808 | None:intergenic | 45.0% |
| !! | ATCCTTGGTGTCATGAGTAC+TGG | - | chr1.1:60960250-60960269 | MS.gene96748:intron | 45.0% |
| !! | CAATTGGTTAGCCTGTTGAG+AGG | + | chr1.1:60956414-60956433 | None:intergenic | 45.0% |
| !! | GACTTTTGTTGTGTGGAGGA+TGG | - | chr1.1:60956008-60956027 | MS.gene96748:intron | 45.0% |
| !! | GGATGACTTTTGTTGTGTGG+AGG | - | chr1.1:60956004-60956023 | MS.gene96748:intron | 45.0% |
| !! | TCCTTGGTGTCATGAGTACT+GGG | - | chr1.1:60960251-60960270 | MS.gene96748:intron | 45.0% |
| !!! | CAGGTTTTGATGGTGTCTCA+CGG | + | chr1.1:60959691-60959710 | None:intergenic | 45.0% |
| !!! | GCCATAGGGTCTATTTTTGG+AGG | - | chr1.1:60959749-60959768 | MS.gene96748:intron | 45.0% |
| !! | AAAAAAAAAAAAGTAAAATA+CGG | + | chr1.1:60958596-60958615 | None:intergenic | 5.0% |
| !! | AGTAAATTATTATTAATATA+TGG | + | chr1.1:60958234-60958253 | None:intergenic | 5.0% |
| !! | ATATATGAAATATTATTTAA+CGG | - | chr1.1:60956221-60956240 | MS.gene96748:intron | 5.0% |
| !! | ATATATTAATAATAATTTAC+TGG | - | chr1.1:60958233-60958252 | MS.gene96748:intron | 5.0% |
| !! | TATATTTAATAGAAAATTAA+AGG | + | chr1.1:60958893-60958912 | None:intergenic | 5.0% |
| !!! | ACATAATTTTTTTTTAAAAT+AGG | + | chr1.1:60958534-60958553 | None:intergenic | 5.0% |
| !!! | ATAATTTTTTTTTAAAATAG+GGG | + | chr1.1:60958532-60958551 | None:intergenic | 5.0% |
| !!! | CATAATTTTTTTTTAAAATA+GGG | + | chr1.1:60958533-60958552 | None:intergenic | 5.0% |
| !!! | GAAATTTTATTAATTTAATT+TGG | - | chr1.1:60958485-60958504 | MS.gene96748:CDS | 5.0% |
| !!! | TTTAAAAAAAAATTATGTTT+TGG | - | chr1.1:60958536-60958555 | MS.gene96748:intron | 5.0% |
| CAGATTTGCCTGTCAAGTCC+AGG | - | chr1.1:60957163-60957182 | MS.gene96748:CDS | 50.0% | |
| CATACTGGCGTCTTTGTGGA+CGG | - | chr1.1:60961094-60961113 | MS.gene96748:CDS | 50.0% | |
| CCATCAAAACCTGGTCCGAT+TGG | - | chr1.1:60959698-60959717 | MS.gene96748:intron | 50.0% | |
| CCTCTATCTGGAAAAGGTGG+TGG | - | chr1.1:60956333-60956352 | MS.gene96748:CDS | 50.0% | |
| CGTGAGACACCATCAAAACC+TGG | - | chr1.1:60959689-60959708 | MS.gene96748:intron | 50.0% | |
| CTACTCAATCCAATCGGACC+AGG | + | chr1.1:60959710-60959729 | None:intergenic | 50.0% | |
| CTCTTCTGGATAGGCCTAAC+AGG | + | chr1.1:60959981-60960000 | None:intergenic | 50.0% | |
| GAGCATGGGGTCATAGCAAA+GGG | - | chr1.1:60960896-60960915 | MS.gene96748:intron | 50.0% | |
| GGGGGCAAATAAAAAGGGAG+TGG | + | chr1.1:60957747-60957766 | None:intergenic | 50.0% | |
| TAATGCACAAGTCCGCCCTA+TGG | - | chr1.1:60955691-60955710 | MS.gene96748:intron | 50.0% | |
| TCCCAGTACTCATGACACCA+AGG | + | chr1.1:60960255-60960274 | None:intergenic | 50.0% | |
| TCTGCAGCTACCCAGAAGAT+GGG | + | chr1.1:60955439-60955458 | None:intergenic | 50.0% | |
| TTCTGCAGCTACCCAGAAGA+TGG | + | chr1.1:60955440-60955459 | None:intergenic | 50.0% | |
| ! | ATAGGGCGGACTTGTGCATT+AGG | + | chr1.1:60955692-60955711 | None:intergenic | 50.0% |
| ! | CACCTTTTCCAGATAGAGGG+CGG | + | chr1.1:60956332-60956351 | None:intergenic | 50.0% |
| ! | CCACCACCTTTTCCAGATAG+AGG | + | chr1.1:60956336-60956355 | None:intergenic | 50.0% |
| ! | CGAAGCCTTATCCCACTAAG+TGG | + | chr1.1:60960790-60960809 | None:intergenic | 50.0% |
| !! | CCAATCGGACCAGGTTTTGA+TGG | + | chr1.1:60959701-60959720 | None:intergenic | 50.0% |
| AAGGATTGCCGCCCTCTATC+TGG | - | chr1.1:60956321-60956340 | MS.gene96748:CDS | 55.0% | |
| ACGAACTCTGCGTGCTCGTA+TGG | - | chr1.1:60959541-60959560 | MS.gene96748:intron | 55.0% | |
| AGACCCTATGGCCCTAGCAA+AGG | + | chr1.1:60959741-60959760 | None:intergenic | 55.0% | |
| CGCCCTCTATCTGGAAAAGG+TGG | - | chr1.1:60956330-60956349 | MS.gene96748:CDS | 55.0% | |
| CTGCTGCGCAGAACCTTTCT+GGG | - | chr1.1:60959839-60959858 | MS.gene96748:intron | 55.0% | |
| GAGGAGAGTCGGATCAGAAG+AGG | - | chr1.1:60960653-60960672 | MS.gene96748:intron | 55.0% | |
| GGAGCATGGGGTCATAGCAA+AGG | - | chr1.1:60960895-60960914 | MS.gene96748:intron | 55.0% | |
| TCTGCTGCGCAGAACCTTTC+TGG | - | chr1.1:60959838-60959857 | MS.gene96748:intron | 55.0% | |
| TGCCGCCCTCTATCTGGAAA+AGG | - | chr1.1:60956327-60956346 | MS.gene96748:CDS | 55.0% | |
| GCACAAGTCCGCCCTATGGT+AGG | - | chr1.1:60955695-60955714 | MS.gene96748:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 60955366 | 60961137 | 60955366 | ID=MS.gene96748 |
| chr1.1 | mRNA | 60955366 | 60961137 | 60955366 | ID=MS.gene96748.t1;Parent=MS.gene96748 |
| chr1.1 | exon | 60960973 | 60961137 | 60960973 | ID=MS.gene96748.t1.exon1;Parent=MS.gene96748.t1 |
| chr1.1 | CDS | 60960973 | 60961137 | 60960973 | ID=cds.MS.gene96748.t1;Parent=MS.gene96748.t1 |
| chr1.1 | exon | 60960791 | 60960877 | 60960791 | ID=MS.gene96748.t1.exon2;Parent=MS.gene96748.t1 |
| chr1.1 | CDS | 60960791 | 60960877 | 60960791 | ID=cds.MS.gene96748.t1;Parent=MS.gene96748.t1 |
| chr1.1 | exon | 60959267 | 60959346 | 60959267 | ID=MS.gene96748.t1.exon3;Parent=MS.gene96748.t1 |
| chr1.1 | CDS | 60959267 | 60959346 | 60959267 | ID=cds.MS.gene96748.t1;Parent=MS.gene96748.t1 |
| chr1.1 | exon | 60958865 | 60958916 | 60958865 | ID=MS.gene96748.t1.exon4;Parent=MS.gene96748.t1 |
| chr1.1 | CDS | 60958865 | 60958916 | 60958865 | ID=cds.MS.gene96748.t1;Parent=MS.gene96748.t1 |
| chr1.1 | exon | 60958425 | 60958514 | 60958425 | ID=MS.gene96748.t1.exon5;Parent=MS.gene96748.t1 |
| chr1.1 | CDS | 60958425 | 60958514 | 60958425 | ID=cds.MS.gene96748.t1;Parent=MS.gene96748.t1 |
| chr1.1 | exon | 60957152 | 60957220 | 60957152 | ID=MS.gene96748.t1.exon6;Parent=MS.gene96748.t1 |
| chr1.1 | CDS | 60957152 | 60957220 | 60957152 | ID=cds.MS.gene96748.t1;Parent=MS.gene96748.t1 |
| chr1.1 | exon | 60956941 | 60957042 | 60956941 | ID=MS.gene96748.t1.exon7;Parent=MS.gene96748.t1 |
| chr1.1 | CDS | 60956941 | 60957042 | 60956941 | ID=cds.MS.gene96748.t1;Parent=MS.gene96748.t1 |
| chr1.1 | exon | 60956298 | 60956366 | 60956298 | ID=MS.gene96748.t1.exon8;Parent=MS.gene96748.t1 |
| chr1.1 | CDS | 60956298 | 60956366 | 60956298 | ID=cds.MS.gene96748.t1;Parent=MS.gene96748.t1 |
| chr1.1 | exon | 60956128 | 60956184 | 60956128 | ID=MS.gene96748.t1.exon9;Parent=MS.gene96748.t1 |
| chr1.1 | CDS | 60956128 | 60956184 | 60956128 | ID=cds.MS.gene96748.t1;Parent=MS.gene96748.t1 |
| chr1.1 | exon | 60955366 | 60955461 | 60955366 | ID=MS.gene96748.t1.exon10;Parent=MS.gene96748.t1 |
| chr1.1 | CDS | 60955366 | 60955461 | 60955366 | ID=cds.MS.gene96748.t1;Parent=MS.gene96748.t1 |
| Gene Sequence |
| Protein sequence |
