AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96762

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96762.t1 MTR_1g082650 88.468 581 54 6 1 572 1 577 0.0 572
MS.gene96762.t1 MTR_2g022250 68.354 79 25 0 1 79 1 79 2.04e-29 122
MS.gene96762.t1 MTR_1g107565 66.667 78 23 1 1 75 1 78 5.26e-28 116
MS.gene96762.t1 MTR_4g117140 64.103 78 28 0 1 78 1 78 1.22e-26 114
MS.gene96762.t1 MTR_4g117220 64.103 78 28 0 1 78 1 78 1.31e-26 114
MS.gene96762.t1 MTR_2g022240 63.158 76 28 0 1 76 1 76 3.98e-24 106
MS.gene96762.t1 MTR_7g108560 57.143 70 30 0 5 74 17 86 1.70e-19 89.7
MS.gene96762.t1 MTR_3g067750 52.113 71 34 0 3 73 5 75 1.59e-18 84.7
MS.gene96762.t1 MTR_4g119820 55.224 67 30 0 7 73 71 137 5.83e-18 86.3
MS.gene96762.t1 MTR_7g113110 54.545 66 30 0 9 74 32 97 3.77e-17 84.0
MS.gene96762.t1 MTR_1g083310 52.174 69 32 1 7 74 12 80 1.81e-16 82.0
MS.gene96762.t1 MTR_8g091420 60.656 61 24 0 14 74 33 93 5.77e-15 72.8
MS.gene96762.t1 MTR_2g436830 54.412 68 31 0 7 74 12 79 1.80e-14 74.7
MS.gene96762.t1 MTR_3g087770 54.545 66 30 0 9 74 29 94 5.24e-14 70.1
MS.gene96762.t1 MTR_6g026890 42.254 71 37 1 8 74 10 80 2.90e-13 67.8
MS.gene96762.t1 MTR_7g113750 43.373 83 41 3 1 81 6 84 9.75e-13 70.5
MS.gene96762.t1 MTR_2g018790 39.474 76 45 1 4 78 2 77 1.21e-12 69.3
MS.gene96762.t1 MTR_6g003990 41.791 67 38 1 9 74 29 95 1.78e-12 65.9
MS.gene96762.t1 MTR_5g025150 40.278 72 43 0 3 74 16 87 9.23e-12 63.5
MS.gene96762.t1 MTR_4g073040 41.096 73 42 1 3 74 21 93 1.29e-11 63.5
MS.gene96762.t1 MTR_1g078090 43.243 74 42 0 1 74 44 117 1.58e-11 63.9
MS.gene96762.t1 MTR_5g022620 42.647 68 38 1 8 74 27 94 2.39e-11 62.8
MS.gene96762.t1 MTR_1g030630 39.394 66 40 0 9 74 24 89 3.99e-11 61.6
MS.gene96762.t1 MTR_7g083060 40.541 74 43 1 2 74 16 89 4.25e-11 61.6
MS.gene96762.t1 MTR_3g073670 37.349 83 49 1 14 93 30 112 5.00e-11 61.6
MS.gene96762.t1 MTR_2g091235 41.026 78 45 1 14 91 6 82 5.24e-11 61.2
MS.gene96762.t1 MTR_1g092670 42.647 68 39 0 7 74 1 68 6.77e-11 58.9
MS.gene96762.t1 MTR_3g435930 47.761 67 34 1 9 74 115 181 8.33e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96762.t1 AT5G19090 63.366 101 36 1 1 101 1 100 1.61e-32 130
MS.gene96762.t1 AT5G19090 63.366 101 36 1 1 101 1 100 1.61e-32 130
MS.gene96762.t1 AT5G19090 63.366 101 36 1 1 101 1 100 5.33e-32 130
MS.gene96762.t1 AT5G19090 63.366 101 36 1 1 101 1 100 5.33e-32 130
MS.gene96762.t1 AT5G19090 63.366 101 36 1 1 101 1 100 5.33e-32 130
MS.gene96762.t1 AT3G05220 57.143 112 43 1 1 112 1 107 1.56e-29 123
MS.gene96762.t1 AT1G23000 47.656 128 54 4 6 132 9 124 6.29e-24 103
MS.gene96762.t1 AT1G23000 47.656 128 54 4 6 132 69 184 2.42e-23 103
MS.gene96762.t1 AT5G27690 47.059 85 45 0 7 91 27 111 2.68e-22 99.0
MS.gene96762.t1 AT5G37860 58.462 65 27 0 9 73 9 73 5.38e-19 87.4
MS.gene96762.t1 AT1G56210 58.730 63 26 0 10 72 40 102 2.28e-17 84.3
MS.gene96762.t1 AT1G06330 50.820 61 30 0 14 74 6 66 1.25e-13 68.9
MS.gene96762.t1 AT4G08570 47.059 68 35 1 8 74 24 91 6.18e-13 67.0
MS.gene96762.t1 AT1G22990 41.975 81 44 2 3 82 24 102 6.23e-12 64.3
MS.gene96762.t1 AT2G37390 47.692 65 33 1 10 74 180 243 7.23e-12 66.2
MS.gene96762.t1 AT2G37390 47.692 65 33 1 10 74 181 244 7.32e-12 66.2
MS.gene96762.t1 AT3G02960 41.892 74 42 1 3 75 119 192 1.35e-11 65.5
MS.gene96762.t1 AT5G02600 49.231 65 32 1 10 74 250 313 1.95e-11 65.9
MS.gene96762.t1 AT5G02600 49.231 65 32 1 10 74 250 313 1.95e-11 65.9
MS.gene96762.t1 AT1G22990 42.254 71 40 1 13 82 27 97 2.23e-11 62.4
MS.gene96762.t1 AT4G23882 46.970 66 34 1 9 73 77 142 3.13e-11 65.1
MS.gene96762.t1 AT1G71050 40.909 66 39 0 9 74 27 92 3.49e-11 62.0
MS.gene96762.t1 AT3G56891 45.902 61 33 0 14 74 20 80 5.52e-11 62.0
MS.gene96762.t1 AT5G17450 42.424 66 38 0 9 74 25 90 6.29e-11 61.2

Find 164 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTACCATGTCCATTAT+TGG 0.170658 1.1:-61191391 None:intergenic
GGGCCTCCAGGCAATGGATT+TGG 0.269551 1.1:+61190739 MS.gene96762:CDS
ACATCCATCAATGAACTATA+TGG 0.284194 1.1:+61191788 MS.gene96762:CDS
GCCAAGGGCAATGCCAATAA+TGG 0.314955 1.1:+61191378 MS.gene96762:CDS
GATGGAGGTAAGAAGAATAA+AGG 0.317363 1.1:+61191030 MS.gene96762:CDS
TGCTGCTGTTGTTGCTGATA+AGG 0.327335 1.1:-61191618 None:intergenic
CCTCCTCCTTTACCATTACC+TGG 0.330004 1.1:-61190877 None:intergenic
CTAGTTAAGTTTCTAGGGCT+TGG 0.332945 1.1:+61191147 MS.gene96762:CDS
CAGGGAAACATGCTGAACTA+TGG 0.336084 1.1:+61190380 MS.gene96762:CDS
CTGCCGGCATGCTCCTCATT+TGG 0.337899 1.1:-61191518 None:intergenic
GCCGGCAGTGCAAGGGTTAC+CGG 0.341648 1.1:+61191533 MS.gene96762:CDS
AATGGACATGGTAATAATAA+TGG 0.358191 1.1:+61191396 MS.gene96762:CDS
ACAAGATATGATGAAAATTC+AGG 0.364742 1.1:+61189711 MS.gene96762:CDS
GGCCTCCAGGCAATGGATTT+GGG 0.369230 1.1:+61190740 MS.gene96762:CDS
GGGGAAAAGCAAAAGGGTGG+TGG 0.371759 1.1:+61191051 MS.gene96762:CDS
TCCTCATAGTAAAAGTGTTA+AGG 0.372406 1.1:+61191326 MS.gene96762:CDS
TGTTGTTGCTGATAAGGATT+TGG 0.373280 1.1:-61191612 None:intergenic
CAGAATCAAAAGGGTCAAAA+AGG 0.373373 1.1:+61190514 MS.gene96762:CDS
GGGGCAGCTGCGGCGATGAA+TGG 0.373441 1.1:+61191558 MS.gene96762:CDS
ATGGTAATAATAATGGTAAT+GGG 0.379392 1.1:+61191403 MS.gene96762:CDS
AAAAGTGTTAAGGGTGGAAA+TGG 0.379542 1.1:+61191336 MS.gene96762:CDS
ACCATTACCTGGGATGTTCA+TGG 0.380238 1.1:-61190866 None:intergenic
AACATGTTTCTGAGATTTGT+TGG 0.389321 1.1:-61190593 None:intergenic
CCTCATAGTAAAAGTGTTAA+GGG 0.396838 1.1:+61191327 MS.gene96762:CDS
ATGGAGGTAAGAAGAATAAA+GGG 0.400340 1.1:+61191031 MS.gene96762:CDS
GAGGATGAAGAAGAGGAGTT+TGG 0.403036 1.1:+61190688 MS.gene96762:CDS
TCTGATTCATTGCACCCATC+TGG 0.405299 1.1:-61191446 None:intergenic
GAAAAGCAAAAGGGTGGTGG+GGG 0.405813 1.1:+61191054 MS.gene96762:CDS
GTTAAGGGTGGAAATGGAAA+TGG 0.411326 1.1:+61191342 MS.gene96762:CDS
CAGTGCAAGGGTTACCGGCC+GGG 0.416864 1.1:+61191538 MS.gene96762:CDS
TCCATTATTGGCATTGCCCT+TGG 0.417589 1.1:-61191379 None:intergenic
GGAAAAGCAAAAGGGTGGTG+GGG 0.418059 1.1:+61191053 MS.gene96762:CDS
GCCGGTAACCCTTGCACTGC+CGG 0.421629 1.1:-61191534 None:intergenic
CATGGTAATAATAATGGTAA+TGG 0.423098 1.1:+61191402 MS.gene96762:CDS
AATGGTCGTGGGCCACAGCT+AGG 0.432834 1.1:+61190808 MS.gene96762:CDS
AGTGCAAGGGTTACCGGCCG+GGG 0.435816 1.1:+61191539 MS.gene96762:CDS
GAATAAAGGGGAAAAGCAAA+AGG 0.443691 1.1:+61191044 MS.gene96762:CDS
GGTAATGGAGGTGGTAAGAA+AGG 0.449463 1.1:+61191000 MS.gene96762:CDS
TATCCACAACATATGATGTA+TGG 0.452805 1.1:+61191753 MS.gene96762:CDS
TGCAAATGGATAATAACAAA+GGG 0.454184 1.1:+61190473 MS.gene96762:CDS
TTATTGGCATTGCCCTTGGC+AGG 0.454606 1.1:-61191375 None:intergenic
AAACTGCTTCAGAAAATTGA+AGG 0.457319 1.1:+61189915 MS.gene96762:CDS
ACCTATGCAAATGCAGATGA+AGG 0.459346 1.1:+61190945 MS.gene96762:CDS
GTAATGGAGGTGGTAAGAAA+GGG 0.460661 1.1:+61191001 MS.gene96762:CDS
ACATGTTTCTGAGATTTGTT+GGG 0.462682 1.1:-61190592 None:intergenic
GGGAAAAGCAAAAGGGTGGT+GGG 0.463087 1.1:+61191052 MS.gene96762:CDS
TCTGGCCCATTGGACCCATA+TGG 0.464410 1.1:-61191428 None:intergenic
CAACAAGCCTCAGAATCAAA+AGG 0.465567 1.1:+61190504 MS.gene96762:CDS
TCACTGAAAACATGAGTGAT+TGG 0.466485 1.1:-61191846 None:intergenic
TGCTGCCCAAATCCATTGCC+TGG 0.470924 1.1:-61190745 None:intergenic
CAAGGGAAGGTGTTGGTGAC+AGG 0.475651 1.1:+61190316 MS.gene96762:CDS
TCAGTTTAAGAACATGCAAA+TGG 0.478310 1.1:+61190459 MS.gene96762:CDS
CCACAGCTAGGGCCTGGTGA+TGG 0.480756 1.1:+61190820 MS.gene96762:CDS
AGGGAAACATGCTGAACTAT+GGG 0.482972 1.1:+61190381 MS.gene96762:CDS
AATGGGTCAGATGGGTTCAA+TGG 0.483632 1.1:+61191494 MS.gene96762:CDS
ATTGCACCCATCTGGCCCAT+TGG 0.483802 1.1:-61191438 None:intergenic
AAGGGTAAAAGTGGAAATTA+CGG 0.485308 1.1:+61190964 MS.gene96762:CDS
ATTCATCGCCGCAGCTGCCC+CGG 0.485684 1.1:-61191556 None:intergenic
GAGGAGTGATATCAAAGTCT+TGG 0.486969 1.1:-61191308 None:intergenic
ATGAATAAGATGGGTCCAAT+GGG 0.487266 1.1:+61191477 MS.gene96762:CDS
GCAGTGCAAGGGTTACCGGC+CGG 0.488422 1.1:+61191537 MS.gene96762:CDS
GGCCATGGTCAAGGGCCTCC+AGG 0.488629 1.1:+61190727 MS.gene96762:CDS
CATGGTCATGGCCATGGTCA+AGG 0.488816 1.1:+61190718 MS.gene96762:CDS
CGTGGGCCACAGCTAGGGCC+TGG 0.491267 1.1:+61190814 MS.gene96762:CDS
ATCGCCGCAGCTGCCCCGGC+CGG 0.491724 1.1:-61191552 None:intergenic
GATGGGTCCAATGGGTCAGA+TGG 0.493165 1.1:+61191485 MS.gene96762:CDS
AACAACAGCAAAGGGAAAGA+AGG 0.496636 1.1:+61191246 MS.gene96762:CDS
AGGAGCATGCCGGCAGTGCA+AGG 0.498242 1.1:+61191525 MS.gene96762:CDS
GTTACCGGCCGGGGCAGCTG+CGG 0.501977 1.1:+61191548 MS.gene96762:CDS
ACCAATGCCATCACACCCTA+TGG 0.502702 1.1:+61191818 MS.gene96762:CDS
GCCATGAACATCCCAGGTAA+TGG 0.503054 1.1:+61190865 MS.gene96762:CDS
CCTGGGATGTTCATGGCAGC+AGG 0.506128 1.1:-61190859 None:intergenic
TGCCTGGAGGCCCTTGACCA+TGG 0.506822 1.1:-61190729 None:intergenic
TTAAGGGTGGAAATGGAAAT+GGG 0.510137 1.1:+61191343 MS.gene96762:CDS
GGTGATGGTATGATGATGAA+TGG 0.512661 1.1:+61190835 MS.gene96762:CDS
GGTCAAGGGCCTCCAGGCAA+TGG 0.514555 1.1:+61190733 MS.gene96762:CDS
CTCCTCCTTTACCATTACCT+GGG 0.516139 1.1:-61190876 None:intergenic
CATCCATCAATGAACTATAT+GGG 0.516767 1.1:+61191789 MS.gene96762:CDS
GATGGCAGCAATGAATAAGA+TGG 0.517515 1.1:+61191467 MS.gene96762:CDS
ATTGAACCCATCTGACCCAT+TGG 0.518800 1.1:-61191492 None:intergenic
TCTGTAGAATTGTCTTCTCA+AGG 0.518947 1.1:+61189854 MS.gene96762:intron
TATGGGTCCAATGGGCCAGA+TGG 0.519343 1.1:+61191431 MS.gene96762:CDS
ATTTGCATGTTCTTAAACTG+AGG 0.523768 1.1:-61190457 None:intergenic
CCAGGTAATGGTAAAGGAGG+AGG 0.524243 1.1:+61190877 MS.gene96762:CDS
ATGAATGGTGGCTATTATCA+AGG 0.526298 1.1:+61191573 MS.gene96762:CDS
ATAGCAACAACAACAGCAAA+GGG 0.527970 1.1:+61191238 MS.gene96762:CDS
ATGGTCGTGGGCCACAGCTA+GGG 0.529327 1.1:+61190809 MS.gene96762:CDS
GCATAATAACAAGATGATGA+TGG 0.529721 1.1:+61190774 MS.gene96762:CDS
ATGGGTCCAATGGGCCAGAT+GGG 0.532006 1.1:+61191432 MS.gene96762:CDS
ATATAGTTCATTGATGGATG+TGG 0.537347 1.1:-61191786 None:intergenic
TTGTGAAGGTTGTGAGCAGA+AGG 0.537353 1.1:+61189887 MS.gene96762:CDS
AACATCCCAGGTAATGGTAA+AGG 0.537780 1.1:+61190871 MS.gene96762:CDS
GGGTGTGATGGCATTGGTGG+CGG 0.538638 1.1:-61191813 None:intergenic
GCTATGATGCAGAATGGTCG+TGG 0.539141 1.1:+61190796 MS.gene96762:CDS
AAAGGGAAAGAAGGTAAGAA+AGG 0.540026 1.1:+61191255 MS.gene96762:CDS
CACGGACATGGTCATGGCCA+TGG 0.540291 1.1:+61190712 MS.gene96762:CDS
GGTCCCATATAGTTCATTGA+TGG 0.543358 1.1:-61191792 None:intergenic
ATGCAGATGAAGGGTAAAAG+TGG 0.544101 1.1:+61190955 MS.gene96762:CDS
ATAGGGTGTGATGGCATTGG+TGG 0.545253 1.1:-61191816 None:intergenic
GGTAATGGTAAAGGAGGAGG+GGG 0.546326 1.1:+61190880 MS.gene96762:CDS
GCCATAGGGTGTGATGGCAT+TGG 0.546440 1.1:-61191819 None:intergenic
GAGGAGTTTGGTCACGGACA+TGG 0.551855 1.1:+61190700 MS.gene96762:CDS
CAGGTAATGGTAAAGGAGGA+GGG 0.551930 1.1:+61190878 MS.gene96762:CDS
TGGGTTCAATGGACCAAATG+AGG 0.553719 1.1:+61191505 MS.gene96762:CDS
TAATGGAGGTGGTAAGAAAG+GGG 0.555785 1.1:+61191002 MS.gene96762:CDS
ATGGTCATGGCCATGGTCAA+GGG 0.556259 1.1:+61190719 MS.gene96762:CDS
CCCTTCATCTGCATTTGCAT+AGG 0.556545 1.1:-61190946 None:intergenic
AATGAATAAGATGGGTCCAA+TGG 0.557145 1.1:+61191476 MS.gene96762:CDS
TGGGAAAGGTGCTCCTGCCA+AGG 0.561931 1.1:+61191362 MS.gene96762:CDS
GCAGCTGCGGCGATGAATGG+TGG 0.562369 1.1:+61191561 MS.gene96762:CDS
CCTCCATACATCATATGTTG+TGG 0.564896 1.1:-61191756 None:intergenic
ACAACAACAACAGCAATACA+TGG 0.565187 1.1:+61191644 MS.gene96762:CDS
GCACAGTTTCAAAATCCTAA+AGG 0.569465 1.1:+61190550 MS.gene96762:CDS
AACAAGCCTCAGAATCAAAA+GGG 0.570080 1.1:+61190505 MS.gene96762:CDS
TTTGGTCACGGACATGGTCA+TGG 0.570828 1.1:+61190706 MS.gene96762:CDS
GGTAATAATAATGGTAATGG+GGG 0.572168 1.1:+61191405 MS.gene96762:CDS
ATGCAAATGGATAATAACAA+AGG 0.575532 1.1:+61190472 MS.gene96762:CDS
AAGGTTAATATCCATTGTGA+AGG 0.575780 1.1:+61189873 MS.gene96762:CDS
TGGTAATAATAATGGTAATG+GGG 0.579408 1.1:+61191404 MS.gene96762:CDS
ATGGGTCCAATGGGTCAGAT+GGG 0.580478 1.1:+61191486 MS.gene96762:CDS
GTGAATATAGATGCAGAACA+AGG 0.583193 1.1:+61190298 MS.gene96762:CDS
GTGATGGTATGATGATGAAT+GGG 0.583869 1.1:+61190836 MS.gene96762:CDS
GCAAATGGATAATAACAAAG+GGG 0.584331 1.1:+61190474 MS.gene96762:CDS
TGAGTGATTGGATCTGCCAT+AGG 0.585575 1.1:-61191834 None:intergenic
CCTGCTGCCATGAACATCCC+AGG 0.587642 1.1:+61190859 MS.gene96762:CDS
AATAAAGGGGAAAAGCAAAA+GGG 0.595467 1.1:+61191045 MS.gene96762:CDS
ATGGCAGCAATGAATAAGAT+GGG 0.598736 1.1:+61191468 MS.gene96762:CDS
TATAGATGCAGAACAAGGGA+AGG 0.601009 1.1:+61190303 MS.gene96762:CDS
GGATCTGCCATAGGGTGTGA+TGG 0.601407 1.1:-61191825 None:intergenic
AATAGCAACAACAACAGCAA+AGG 0.601726 1.1:+61191237 MS.gene96762:CDS
CAACATATGATGTATGGAGG+AGG 0.605393 1.1:+61191759 MS.gene96762:CDS
CCTATGCAAATGCAGATGAA+GGG 0.607502 1.1:+61190946 MS.gene96762:CDS
TTCATCATCATACCATCACC+AGG 0.608129 1.1:-61190832 None:intergenic
ATCCCAGGTAATGGTAAAGG+AGG 0.609225 1.1:+61190874 MS.gene96762:CDS
ATCATCTTGTTATTATGCAT+AGG 0.612468 1.1:-61190769 None:intergenic
GGGAAAGGTGCTCCTGCCAA+GGG 0.613724 1.1:+61191363 MS.gene96762:CDS
GGACCAAATGAGGAGCATGC+CGG 0.615075 1.1:+61191515 MS.gene96762:CDS
TGCAGAACAAGGGAAGGTGT+TGG 0.615855 1.1:+61190309 MS.gene96762:CDS
GGAGCATGCCGGCAGTGCAA+GGG 0.616628 1.1:+61191526 MS.gene96762:CDS
GAAGAAGAGGAGTTTGGTCA+CGG 0.617819 1.1:+61190694 MS.gene96762:CDS
GATGGGTGCAATGAATCAGA+TGG 0.620881 1.1:+61191449 MS.gene96762:CDS
CATAGTAAAAGTGTTAAGGG+TGG 0.621859 1.1:+61191330 MS.gene96762:CDS
GGCAATGCCAATAATGGACA+TGG 0.622193 1.1:+61191384 MS.gene96762:CDS
AATGGAGGTGGTAAGAAAGG+GGG 0.629262 1.1:+61191003 MS.gene96762:CDS
GGTGGAAATGGAAATGGGAA+AGG 0.631545 1.1:+61191348 MS.gene96762:CDS
CCATCACCAGGCCCTAGCTG+TGG 0.636272 1.1:-61190820 None:intergenic
AAAGGGGAAAAGCAAAAGGG+TGG 0.640635 1.1:+61191048 MS.gene96762:CDS
CCACAACATATGATGTATGG+AGG 0.641920 1.1:+61191756 MS.gene96762:CDS
GAGTGATTGGATCTGCCATA+GGG 0.655708 1.1:-61191833 None:intergenic
ATATGATGTATGGAGGAGGA+AGG 0.656963 1.1:+61191763 MS.gene96762:CDS
AAACATGCTGAACTATGGGG+TGG 0.661564 1.1:+61190385 MS.gene96762:CDS
ATGATGGCTATGATGCAGAA+TGG 0.662536 1.1:+61190790 MS.gene96762:CDS
TGAATATAGATGCAGAACAA+GGG 0.662709 1.1:+61190299 MS.gene96762:CDS
TGGAGGTAAGAAGAATAAAG+GGG 0.662757 1.1:+61191032 MS.gene96762:CDS
CAAATGGATAATAACAAAGG+GGG 0.663697 1.1:+61190475 MS.gene96762:CDS
CAGTTTCAAAATCCTAAAGG+AGG 0.665835 1.1:+61190553 MS.gene96762:CDS
CAGCAACAACAAATGCAGCA+AGG 0.669858 1.1:+61191714 MS.gene96762:CDS
TCTGCTCACAACCTTCACAA+TGG 0.671031 1.1:-61189884 None:intergenic
AGGTAATGGTAAAGGAGGAG+GGG 0.672440 1.1:+61190879 MS.gene96762:CDS
GAGGAATTTGATGAGAGTGA+TGG 0.688249 1.1:+61190634 MS.gene96762:CDS
GGGAAACATGCTGAACTATG+GGG 0.688345 1.1:+61190382 MS.gene96762:CDS
TGCCCAAATCCATTGCCTGG+AGG 0.700160 1.1:-61190742 None:intergenic
CTATGATGCAGAATGGTCGT+GGG 0.701836 1.1:+61190797 MS.gene96762:CDS
TAAAAGTGGAAATTACGGTG+AGG 0.728158 1.1:+61190969 MS.gene96762:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAACTTTTTAATGTTTATA+AGG + chr1.1:61190161-61190180 MS.gene96762:intron 15.0%
!! AAAAAAACATGAAATTAAGG+AGG - chr1.1:61190101-61190120 None:intergenic 20.0%
!! AAAAAACATGAAATTAAGGA+GGG - chr1.1:61190100-61190119 None:intergenic 20.0%
!! AAAAATAAGTAAGAAGAACA+AGG - chr1.1:61189742-61189761 None:intergenic 20.0%
!! AAAAATGGTAAAGGTAAAAA+CGG + chr1.1:61191111-61191130 MS.gene96762:CDS 20.0%
!! AAACAAAAACTTTACTATGT+CGG + chr1.1:61190050-61190069 MS.gene96762:intron 20.0%
!! AGGAAAAAAACATGAAATTA+AGG - chr1.1:61190104-61190123 None:intergenic 20.0%
!! ATGGTAATAATAATGGTAAT+GGG + chr1.1:61191403-61191422 MS.gene96762:CDS 20.0%
! AATAGTAGCAAGAAGAAAAA+TGG + chr1.1:61191096-61191115 MS.gene96762:CDS 25.0%
! AATCTGTACTTATGTTTAAC+TGG + chr1.1:61189811-61189830 MS.gene96762:intron 25.0%
! AATGGACATGGTAATAATAA+TGG + chr1.1:61191396-61191415 MS.gene96762:CDS 25.0%
! AATTATGCAAAAGCCAAAAA+AGG + chr1.1:61190907-61190926 MS.gene96762:CDS 25.0%
! ACAAGATATGATGAAAATTC+AGG + chr1.1:61189711-61189730 MS.gene96762:CDS 25.0%
! ACATGTTAACTTTACTATGT+CGG + chr1.1:61190006-61190025 MS.gene96762:intron 25.0%
! ATGCAAATGGATAATAACAA+AGG + chr1.1:61190472-61190491 MS.gene96762:CDS 25.0%
! ATTATTACCATGTCCATTAT+TGG - chr1.1:61191394-61191413 None:intergenic 25.0%
! CATGGTAATAATAATGGTAA+TGG + chr1.1:61191402-61191421 MS.gene96762:CDS 25.0%
! TCACAAAAACATCATAAAGT+TGG - chr1.1:61190144-61190163 None:intergenic 25.0%
! TGCAAATGGATAATAACAAA+GGG + chr1.1:61190473-61190492 MS.gene96762:CDS 25.0%
!! TGGTAATAATAATGGTAATG+GGG + chr1.1:61191404-61191423 MS.gene96762:CDS 25.0%
!!! ACTTATGTTTAACTGGTTTT+TGG + chr1.1:61189818-61189837 MS.gene96762:intron 25.0%
!!! ATCATCTTGTTATTATGCAT+AGG - chr1.1:61190772-61190791 None:intergenic 25.0%
!!! ATCCATAATATCTCCTTTTT+TGG - chr1.1:61190923-61190942 None:intergenic 25.0%
!!! GTTTTCTAGTTAAGTTTCTA+GGG + chr1.1:61191142-61191161 MS.gene96762:CDS 25.0%
!!! TGTTAATTTTGATTTGTCTG+AGG + chr1.1:61190612-61190631 MS.gene96762:CDS 25.0%
AAACTGCTTCAGAAAATTGA+AGG + chr1.1:61189915-61189934 MS.gene96762:CDS 30.0%
AAGAAAAGAAGAAAGAGACA+TGG - chr1.1:61189951-61189970 None:intergenic 30.0%
AAGGGTAAAAGTGGAAATTA+CGG + chr1.1:61190964-61190983 MS.gene96762:CDS 30.0%
AAGGTTAATATCCATTGTGA+AGG + chr1.1:61189873-61189892 MS.gene96762:CDS 30.0%
AATAAAGGGGAAAAGCAAAA+GGG + chr1.1:61191045-61191064 MS.gene96762:CDS 30.0%
AATTACGGTGAGGTAAAAAA+TGG + chr1.1:61190979-61190998 MS.gene96762:CDS 30.0%
ACATCCATCAATGAACTATA+TGG + chr1.1:61191788-61191807 MS.gene96762:CDS 30.0%
AGCAAGAAGAAAAATGGTAA+AGG + chr1.1:61191102-61191121 MS.gene96762:CDS 30.0%
AGCCAAAAAAGGAGATATTA+TGG + chr1.1:61190918-61190937 MS.gene96762:CDS 30.0%
AGGTAAGAAAGGTGAAAAAT+TGG + chr1.1:61191266-61191285 MS.gene96762:CDS 30.0%
ATGGAGGTAAGAAGAATAAA+GGG + chr1.1:61191031-61191050 MS.gene96762:CDS 30.0%
ATTTGCATGTTCTTAAACTG+AGG - chr1.1:61190460-61190479 None:intergenic 30.0%
CAAATGGATAATAACAAAGG+GGG + chr1.1:61190475-61190494 MS.gene96762:CDS 30.0%
CATCATAAAGTTGGAAACTT+TGG - chr1.1:61190135-61190154 None:intergenic 30.0%
CATCCATCAATGAACTATAT+GGG + chr1.1:61191789-61191808 MS.gene96762:CDS 30.0%
CTTGGAAAAAAGAGCAAAAA+GGG + chr1.1:61191165-61191184 MS.gene96762:CDS 30.0%
GCAAATGGATAATAACAAAG+GGG + chr1.1:61190474-61190493 MS.gene96762:CDS 30.0%
GCATAATAACAAGATGATGA+TGG + chr1.1:61190774-61190793 MS.gene96762:CDS 30.0%
GTACAGATTCAACTTTAACT+AGG - chr1.1:61189800-61189819 None:intergenic 30.0%
TATCCACAACATATGATGTA+TGG + chr1.1:61191753-61191772 MS.gene96762:CDS 30.0%
TCAAAAAGCTGAAAAGTTCA+GGG + chr1.1:61190362-61190381 MS.gene96762:CDS 30.0%
TCAGTTTAAGAACATGCAAA+TGG + chr1.1:61190459-61190478 MS.gene96762:CDS 30.0%
TGAATATAGATGCAGAACAA+GGG + chr1.1:61190299-61190318 MS.gene96762:CDS 30.0%
! ATATAGTTCATTGATGGATG+TGG - chr1.1:61191789-61191808 None:intergenic 30.0%
! TTCATATCTTTTCCTCCTTT+AGG - chr1.1:61190568-61190587 None:intergenic 30.0%
!! AACATGTTTCTGAGATTTGT+TGG - chr1.1:61190596-61190615 None:intergenic 30.0%
!! ACATGTTTCTGAGATTTGTT+GGG - chr1.1:61190595-61190614 None:intergenic 30.0%
!! CCTCATAGTAAAAGTGTTAA+GGG + chr1.1:61191327-61191346 MS.gene96762:CDS 30.0%
!! GGTAATAATAATGGTAATGG+GGG + chr1.1:61191405-61191424 MS.gene96762:CDS 30.0%
!! TCCTCATAGTAAAAGTGTTA+AGG + chr1.1:61191326-61191345 MS.gene96762:CDS 30.0%
!!! GGTTTTCTAGTTAAGTTTCT+AGG + chr1.1:61191141-61191160 MS.gene96762:CDS 30.0%
!!! TAATTTTGATTTGTCTGAGG+AGG + chr1.1:61190615-61190634 MS.gene96762:CDS 30.0%
!!! TCCATTGTTTTTGTTCTTGT+CGG - chr1.1:61191202-61191221 None:intergenic 30.0%
AAAGGGAAAGAAGGTAAGAA+AGG + chr1.1:61191255-61191274 MS.gene96762:CDS 35.0%
AACAAGCCTCAGAATCAAAA+GGG + chr1.1:61190505-61190524 MS.gene96762:CDS 35.0%
AAGAACAAAAACAATGGAGG+AGG + chr1.1:61191204-61191223 MS.gene96762:CDS 35.0%
AATAGCAACAACAACAGCAA+AGG + chr1.1:61191237-61191256 MS.gene96762:CDS 35.0%
AATCAAAAGGGTCAAAAAGG+TGG + chr1.1:61190517-61190536 MS.gene96762:CDS 35.0%
AATGAATAAGATGGGTCCAA+TGG + chr1.1:61191476-61191495 MS.gene96762:CDS 35.0%
AATGGTAAAGGTAAAAACGG+TGG + chr1.1:61191114-61191133 MS.gene96762:CDS 35.0%
ACAACAACAACAGCAATACA+TGG + chr1.1:61191644-61191663 MS.gene96762:CDS 35.0%
ATAGCAACAACAACAGCAAA+GGG + chr1.1:61191238-61191257 MS.gene96762:CDS 35.0%
ATGAATAAGATGGGTCCAAT+GGG + chr1.1:61191477-61191496 MS.gene96762:CDS 35.0%
ATGAATGGTGGCTATTATCA+AGG + chr1.1:61191573-61191592 MS.gene96762:CDS 35.0%
ATGGCAGCAATGAATAAGAT+GGG + chr1.1:61191468-61191487 MS.gene96762:CDS 35.0%
CAGAATCAAAAGGGTCAAAA+AGG + chr1.1:61190514-61190533 MS.gene96762:CDS 35.0%
CAGTTTCAAAATCCTAAAGG+AGG + chr1.1:61190553-61190572 MS.gene96762:CDS 35.0%
CTCAAAAAGCTGAAAAGTTC+AGG + chr1.1:61190361-61190380 MS.gene96762:CDS 35.0%
GAATAAAGGGGAAAAGCAAA+AGG + chr1.1:61191044-61191063 MS.gene96762:CDS 35.0%
GACAAGAACAAAAACAATGG+AGG + chr1.1:61191201-61191220 MS.gene96762:CDS 35.0%
GATGGAGGTAAGAAGAATAA+AGG + chr1.1:61191030-61191049 MS.gene96762:CDS 35.0%
GCACAGTTTCAAAATCCTAA+AGG + chr1.1:61190550-61190569 MS.gene96762:CDS 35.0%
GCTTGGAAAAAAGAGCAAAA+AGG + chr1.1:61191164-61191183 MS.gene96762:CDS 35.0%
GGTGAGGTAAAAAATGGTAA+TGG + chr1.1:61190985-61191004 MS.gene96762:CDS 35.0%
GTGAATATAGATGCAGAACA+AGG + chr1.1:61190298-61190317 MS.gene96762:CDS 35.0%
TAAAAGTGGAAATTACGGTG+AGG + chr1.1:61190969-61190988 MS.gene96762:CDS 35.0%
TAAGGAGGGTTTAGAAACAT+GGG - chr1.1:61190086-61190105 None:intergenic 35.0%
TCACTGAAAACATGAGTGAT+TGG - chr1.1:61191849-61191868 None:intergenic 35.0%
TCTGTAGAATTGTCTTCTCA+AGG + chr1.1:61189854-61189873 MS.gene96762:intron 35.0%
TGGAAACTTTGGATGAATGA+AGG - chr1.1:61190124-61190143 None:intergenic 35.0%
TGGAGGTAAGAAGAATAAAG+GGG + chr1.1:61191032-61191051 MS.gene96762:CDS 35.0%
TGTTGTTGCTGATAAGGATT+TGG - chr1.1:61191615-61191634 None:intergenic 35.0%
TTAAGGAGGGTTTAGAAACA+TGG - chr1.1:61190087-61190106 None:intergenic 35.0%
TTAAGGGTGGAAATGGAAAT+GGG + chr1.1:61191343-61191362 MS.gene96762:CDS 35.0%
! CCCTTAACACTTTTACTATG+AGG - chr1.1:61191330-61191349 None:intergenic 35.0%
! CTGAACTTTTCAGCTTTTTG+AGG - chr1.1:61190363-61190382 None:intergenic 35.0%
! GTGATGGTATGATGATGAAT+GGG + chr1.1:61190836-61190855 MS.gene96762:CDS 35.0%
! TTTTGATGAGGATGAAGAAG+AGG + chr1.1:61190681-61190700 MS.gene96762:CDS 35.0%
!! AAAAGTGTTAAGGGTGGAAA+TGG + chr1.1:61191336-61191355 MS.gene96762:CDS 35.0%
!! CATAGTAAAAGTGTTAAGGG+TGG + chr1.1:61191330-61191349 MS.gene96762:CDS 35.0%
!! CTATGACGATGATTTTGATG+AGG + chr1.1:61190669-61190688 MS.gene96762:CDS 35.0%
!! GAGGTAAAAAATGGTAATGG+AGG + chr1.1:61190988-61191007 MS.gene96762:CDS 35.0%
!! GTAAAAAATGGTAATGGAGG+TGG + chr1.1:61190991-61191010 MS.gene96762:CDS 35.0%
!! TTTTGACCCTTTTGATTCTG+AGG - chr1.1:61190514-61190533 None:intergenic 35.0%
AAAAAGAGCAAAAAGGGAGG+AGG + chr1.1:61191171-61191190 MS.gene96762:CDS 40.0%
AACAAAAACAATGGAGGAGG+TGG + chr1.1:61191207-61191226 MS.gene96762:CDS 40.0%
AACAACAGCAAAGGGAAAGA+AGG + chr1.1:61191246-61191265 MS.gene96762:CDS 40.0%
ACCTATGCAAATGCAGATGA+AGG + chr1.1:61190945-61190964 MS.gene96762:CDS 40.0%
AGGGAAACATGCTGAACTAT+GGG + chr1.1:61190381-61190400 MS.gene96762:CDS 40.0%
ATATGATGTATGGAGGAGGA+AGG + chr1.1:61191763-61191782 MS.gene96762:CDS 40.0%
ATGATGGCTATGATGCAGAA+TGG + chr1.1:61190790-61190809 MS.gene96762:CDS 40.0%
ATGCAGATGAAGGGTAAAAG+TGG + chr1.1:61190955-61190974 MS.gene96762:CDS 40.0%
CAACAAGCCTCAGAATCAAA+AGG + chr1.1:61190504-61190523 MS.gene96762:CDS 40.0%
CAACATATGATGTATGGAGG+AGG + chr1.1:61191759-61191778 MS.gene96762:CDS 40.0%
CCACAACATATGATGTATGG+AGG + chr1.1:61191756-61191775 MS.gene96762:CDS 40.0%
CCTATGCAAATGCAGATGAA+GGG + chr1.1:61190946-61190965 MS.gene96762:CDS 40.0%
CCTCCATACATCATATGTTG+TGG - chr1.1:61191759-61191778 None:intergenic 40.0%
GAGGAATTTGATGAGAGTGA+TGG + chr1.1:61190634-61190653 MS.gene96762:CDS 40.0%
GAGGAGTGATATCAAAGTCT+TGG - chr1.1:61191311-61191330 None:intergenic 40.0%
GATGGCAGCAATGAATAAGA+TGG + chr1.1:61191467-61191486 MS.gene96762:CDS 40.0%
GCCGACAAGAACAAAAACAA+TGG + chr1.1:61191198-61191217 MS.gene96762:CDS 40.0%
GGAAAAAAGAGCAAAAAGGG+AGG + chr1.1:61191168-61191187 MS.gene96762:CDS 40.0%
GGTCCCATATAGTTCATTGA+TGG - chr1.1:61191795-61191814 None:intergenic 40.0%
GTTAAGGGTGGAAATGGAAA+TGG + chr1.1:61191342-61191361 MS.gene96762:CDS 40.0%
TAATGGAGGTGGTAAGAAAG+GGG + chr1.1:61191002-61191021 MS.gene96762:CDS 40.0%
TATAGATGCAGAACAAGGGA+AGG + chr1.1:61190303-61190322 MS.gene96762:CDS 40.0%
TTCATCATCATACCATCACC+AGG - chr1.1:61190835-61190854 None:intergenic 40.0%
! AACATCCCAGGTAATGGTAA+AGG + chr1.1:61190871-61190890 MS.gene96762:CDS 40.0%
! GGTGATGGTATGATGATGAA+TGG + chr1.1:61190835-61190854 MS.gene96762:CDS 40.0%
! GTAATGGAGGTGGTAAGAAA+GGG + chr1.1:61191001-61191020 MS.gene96762:CDS 40.0%
!! CTAGTTAAGTTTCTAGGGCT+TGG + chr1.1:61191147-61191166 MS.gene96762:CDS 40.0%
AAACATGCTGAACTATGGGG+TGG + chr1.1:61190385-61190404 MS.gene96762:CDS 45.0%
AAAGGGGAAAAGCAAAAGGG+TGG + chr1.1:61191048-61191067 MS.gene96762:CDS 45.0%
AATGGAGGTGGTAAGAAAGG+GGG + chr1.1:61191003-61191022 MS.gene96762:CDS 45.0%
ACCATTACCTGGGATGTTCA+TGG - chr1.1:61190869-61190888 None:intergenic 45.0%
ATTGAACCCATCTGACCCAT+TGG - chr1.1:61191495-61191514 None:intergenic 45.0%
CAGCAACAACAAATGCAGCA+AGG + chr1.1:61191714-61191733 MS.gene96762:CDS 45.0%
CAGGGAAACATGCTGAACTA+TGG + chr1.1:61190380-61190399 MS.gene96762:CDS 45.0%
CCCTTCATCTGCATTTGCAT+AGG - chr1.1:61190949-61190968 None:intergenic 45.0%
CTATGATGCAGAATGGTCGT+GGG + chr1.1:61190797-61190816 MS.gene96762:CDS 45.0%
CTCCTCCTTTACCATTACCT+GGG - chr1.1:61190879-61190898 None:intergenic 45.0%
GAAGAAGAGGAGTTTGGTCA+CGG + chr1.1:61190694-61190713 MS.gene96762:CDS 45.0%
GAGGATGAAGAAGAGGAGTT+TGG + chr1.1:61190688-61190707 MS.gene96762:CDS 45.0%
GAGTGATTGGATCTGCCATA+GGG - chr1.1:61191836-61191855 None:intergenic 45.0%
GATGGGTGCAATGAATCAGA+TGG + chr1.1:61191449-61191468 MS.gene96762:CDS 45.0%
GGGAAACATGCTGAACTATG+GGG + chr1.1:61190382-61190401 MS.gene96762:CDS 45.0%
GGTAAAGGTAAAAACGGTGG+TGG + chr1.1:61191117-61191136 MS.gene96762:CDS 45.0%
GGTGGAAATGGAAATGGGAA+AGG + chr1.1:61191348-61191367 MS.gene96762:CDS 45.0%
TCCATTATTGGCATTGCCCT+TGG - chr1.1:61191382-61191401 None:intergenic 45.0%
TCTGATTCATTGCACCCATC+TGG - chr1.1:61191449-61191468 None:intergenic 45.0%
TCTGCTCACAACCTTCACAA+TGG - chr1.1:61189887-61189906 None:intergenic 45.0%
TGAGTGATTGGATCTGCCAT+AGG - chr1.1:61191837-61191856 None:intergenic 45.0%
TGCTGCTGTTGTTGCTGATA+AGG - chr1.1:61191621-61191640 None:intergenic 45.0%
TGGGTTCAATGGACCAAATG+AGG + chr1.1:61191505-61191524 MS.gene96762:CDS 45.0%
TTGTGAAGGTTGTGAGCAGA+AGG + chr1.1:61189887-61189906 MS.gene96762:CDS 45.0%
! AAAGGTAAAAACGGTGGTGG+TGG + chr1.1:61191120-61191139 MS.gene96762:CDS 45.0%
! AATGGGTCAGATGGGTTCAA+TGG + chr1.1:61191494-61191513 MS.gene96762:CDS 45.0%
! AGGTAATGGTAAAGGAGGAG+GGG + chr1.1:61190879-61190898 MS.gene96762:CDS 45.0%
! ATCCCAGGTAATGGTAAAGG+AGG + chr1.1:61190874-61190893 MS.gene96762:CDS 45.0%
! CAGGTAATGGTAAAGGAGGA+GGG + chr1.1:61190878-61190897 MS.gene96762:CDS 45.0%
! GTTGTTGTTGTTGCGATGCA+GGG + chr1.1:61190266-61190285 MS.gene96762:intron 45.0%
! TGTTGTTGTTGTTGCGATGC+AGG + chr1.1:61190265-61190284 MS.gene96762:intron 45.0%
! TTGTTGTTGTTGCGATGCAG+GGG + chr1.1:61190267-61190286 MS.gene96762:intron 45.0%
!! AATGGTAATGGGGGCCATAT+GGG + chr1.1:61191414-61191433 MS.gene96762:CDS 45.0%
!! AGCTTTTTGAGGAGCTTTGC+TGG - chr1.1:61190352-61190371 None:intergenic 45.0%
!! GGCAATGCCAATAATGGACA+TGG + chr1.1:61191384-61191403 MS.gene96762:CDS 45.0%
!! GGTAATGGAGGTGGTAAGAA+AGG + chr1.1:61191000-61191019 MS.gene96762:CDS 45.0%
!! TAATGGTAATGGGGGCCATA+TGG + chr1.1:61191413-61191432 MS.gene96762:CDS 45.0%
ACCAATGCCATCACACCCTA+TGG + chr1.1:61191818-61191837 MS.gene96762:CDS 50.0%
ATGGGTCCAATGGGTCAGAT+GGG + chr1.1:61191486-61191505 MS.gene96762:CDS 50.0%
ATGGTCATGGCCATGGTCAA+GGG + chr1.1:61190719-61190738 MS.gene96762:CDS 50.0%
CCTCCTCCTTTACCATTACC+TGG - chr1.1:61190880-61190899 None:intergenic 50.0%
GCCAAGGGCAATGCCAATAA+TGG + chr1.1:61191378-61191397 MS.gene96762:CDS 50.0%
GCCATGAACATCCCAGGTAA+TGG + chr1.1:61190865-61190884 MS.gene96762:CDS 50.0%
GCTATGATGCAGAATGGTCG+TGG + chr1.1:61190796-61190815 MS.gene96762:CDS 50.0%
GGAAAAGCAAAAGGGTGGTG+GGG + chr1.1:61191053-61191072 MS.gene96762:CDS 50.0%
GGGAAAAGCAAAAGGGTGGT+GGG + chr1.1:61191052-61191071 MS.gene96762:CDS 50.0%
GGTAAGAAAGGGGGTGATGA+TGG + chr1.1:61191012-61191031 MS.gene96762:CDS 50.0%
TTATTGGCATTGCCCTTGGC+AGG - chr1.1:61191378-61191397 None:intergenic 50.0%
TTTGGTCACGGACATGGTCA+TGG + chr1.1:61190706-61190725 MS.gene96762:CDS 50.0%
! ATAGGGTGTGATGGCATTGG+TGG - chr1.1:61191819-61191838 None:intergenic 50.0%
! CCAGGTAATGGTAAAGGAGG+AGG + chr1.1:61190877-61190896 MS.gene96762:CDS 50.0%
! GAAAAGCAAAAGGGTGGTGG+GGG + chr1.1:61191054-61191073 MS.gene96762:CDS 50.0%
! GGTAATGGTAAAGGAGGAGG+GGG + chr1.1:61190880-61190899 MS.gene96762:CDS 50.0%
! TGCAGAACAAGGGAAGGTGT+TGG + chr1.1:61190309-61190328 MS.gene96762:CDS 50.0%
!! AAGAAAGGGGGTGATGATGG+AGG + chr1.1:61191015-61191034 MS.gene96762:CDS 50.0%
AATGGTAAAGGAGGAGGGGG+TGG + chr1.1:61190883-61190902 MS.gene96762:CDS 55.0%
ATGGGTCCAATGGGCCAGAT+GGG + chr1.1:61191432-61191451 MS.gene96762:CDS 55.0%
ATTGCACCCATCTGGCCCAT+TGG - chr1.1:61191441-61191460 None:intergenic 55.0%
CATGGTCATGGCCATGGTCA+AGG + chr1.1:61190718-61190737 MS.gene96762:CDS 55.0%
GAGGAGTTTGGTCACGGACA+TGG + chr1.1:61190700-61190719 MS.gene96762:CDS 55.0%
GATGGGTCCAATGGGTCAGA+TGG + chr1.1:61191485-61191504 MS.gene96762:CDS 55.0%
GCCATAGGGTGTGATGGCAT+TGG - chr1.1:61191822-61191841 None:intergenic 55.0%
GGATCTGCCATAGGGTGTGA+TGG - chr1.1:61191828-61191847 None:intergenic 55.0%
GGGGAAAAGCAAAAGGGTGG+TGG + chr1.1:61191051-61191070 MS.gene96762:CDS 55.0%
TATGGGTCCAATGGGCCAGA+TGG + chr1.1:61191431-61191450 MS.gene96762:CDS 55.0%
TCTGGCCCATTGGACCCATA+TGG - chr1.1:61191431-61191450 None:intergenic 55.0%
TGCCCAAATCCATTGCCTGG+AGG - chr1.1:61190745-61190764 None:intergenic 55.0%
TGCTGCCCAAATCCATTGCC+TGG - chr1.1:61190748-61190767 None:intergenic 55.0%
! GGACCAAATGAGGAGCATGC+CGG + chr1.1:61191515-61191534 MS.gene96762:CDS 55.0%
! GGCCTCCAGGCAATGGATTT+GGG + chr1.1:61190740-61190759 MS.gene96762:CDS 55.0%
!! AAAAGGGTGGTGGGGGAGAT+TGG + chr1.1:61191061-61191080 MS.gene96762:CDS 55.0%
!! AAAGGGTGGTGGGGGAGATT+GGG + chr1.1:61191062-61191081 MS.gene96762:CDS 55.0%
!! CAAGGGAAGGTGTTGGTGAC+AGG + chr1.1:61190316-61190335 MS.gene96762:CDS 55.0%
AATGGTCGTGGGCCACAGCT+AGG + chr1.1:61190808-61190827 MS.gene96762:CDS 60.0%
ATGGTCGTGGGCCACAGCTA+GGG + chr1.1:61190809-61190828 MS.gene96762:CDS 60.0%
CACGGACATGGTCATGGCCA+TGG + chr1.1:61190712-61190731 MS.gene96762:CDS 60.0%
CCTGCTGCCATGAACATCCC+AGG + chr1.1:61190859-61190878 MS.gene96762:CDS 60.0%
CCTGGGATGTTCATGGCAGC+AGG - chr1.1:61190862-61190881 None:intergenic 60.0%
CTGCCGGCATGCTCCTCATT+TGG - chr1.1:61191521-61191540 None:intergenic 60.0%
GGGGGCCATATGGGTCCAAT+GGG + chr1.1:61191423-61191442 MS.gene96762:CDS 60.0%
TGGGGGCCATATGGGTCCAA+TGG + chr1.1:61191422-61191441 MS.gene96762:CDS 60.0%
! GGGCCTCCAGGCAATGGATT+TGG + chr1.1:61190739-61190758 MS.gene96762:CDS 60.0%
!! AAGGGTGGTGGGGGAGATTG+GGG + chr1.1:61191063-61191082 MS.gene96762:CDS 60.0%
!! GGGAAAGGTGCTCCTGCCAA+GGG + chr1.1:61191363-61191382 MS.gene96762:CDS 60.0%
!! GGGTGTGATGGCATTGGTGG+CGG - chr1.1:61191816-61191835 None:intergenic 60.0%
!! TGGGAAAGGTGCTCCTGCCA+AGG + chr1.1:61191362-61191381 MS.gene96762:CDS 60.0%
AGTGCAAGGGTTACCGGCCG+GGG + chr1.1:61191539-61191558 MS.gene96762:CDS 65.0%
ATTCATCGCCGCAGCTGCCC+CGG - chr1.1:61191559-61191578 None:intergenic 65.0%
CAGTGCAAGGGTTACCGGCC+GGG + chr1.1:61191538-61191557 MS.gene96762:CDS 65.0%
CCACAGCTAGGGCCTGGTGA+TGG + chr1.1:61190820-61190839 MS.gene96762:CDS 65.0%
CCATCACCAGGCCCTAGCTG+TGG - chr1.1:61190823-61190842 None:intergenic 65.0%
GCAGCTGCGGCGATGAATGG+TGG + chr1.1:61191561-61191580 MS.gene96762:CDS 65.0%
GCAGTGCAAGGGTTACCGGC+CGG + chr1.1:61191537-61191556 MS.gene96762:CDS 65.0%
GCCGGCAGTGCAAGGGTTAC+CGG + chr1.1:61191533-61191552 MS.gene96762:CDS 65.0%
GCCGGTAACCCTTGCACTGC+CGG - chr1.1:61191537-61191556 None:intergenic 65.0%
GGAGCATGCCGGCAGTGCAA+GGG + chr1.1:61191526-61191545 MS.gene96762:CDS 65.0%
GGTCAAGGGCCTCCAGGCAA+TGG + chr1.1:61190733-61190752 MS.gene96762:CDS 65.0%
TGCCTGGAGGCCCTTGACCA+TGG - chr1.1:61190732-61190751 None:intergenic 65.0%
! AGGAGCATGCCGGCAGTGCA+AGG + chr1.1:61191525-61191544 MS.gene96762:CDS 65.0%
GGCCATGGTCAAGGGCCTCC+AGG + chr1.1:61190727-61190746 MS.gene96762:CDS 70.0%
GGGGCAGCTGCGGCGATGAA+TGG + chr1.1:61191558-61191577 MS.gene96762:CDS 70.0%
CGTGGGCCACAGCTAGGGCC+TGG + chr1.1:61190814-61190833 MS.gene96762:CDS 75.0%
GTTACCGGCCGGGGCAGCTG+CGG + chr1.1:61191548-61191567 MS.gene96762:CDS 75.0%
! ATCGCCGCAGCTGCCCCGGC+CGG - chr1.1:61191555-61191574 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 61189703 61191899 61189703 ID=MS.gene96762
chr1.1 mRNA 61189703 61191899 61189703 ID=MS.gene96762.t1;Parent=MS.gene96762
chr1.1 exon 61189703 61189732 61189703 ID=MS.gene96762.t1.exon1;Parent=MS.gene96762.t1
chr1.1 CDS 61189703 61189732 61189703 ID=cds.MS.gene96762.t1;Parent=MS.gene96762.t1
chr1.1 exon 61189861 61189936 61189861 ID=MS.gene96762.t1.exon2;Parent=MS.gene96762.t1
chr1.1 CDS 61189861 61189936 61189861 ID=cds.MS.gene96762.t1;Parent=MS.gene96762.t1
chr1.1 exon 61190287 61191899 61190287 ID=MS.gene96762.t1.exon3;Parent=MS.gene96762.t1
chr1.1 CDS 61190287 61191899 61190287 ID=cds.MS.gene96762.t1;Parent=MS.gene96762.t1
Gene Sequence

>MS.gene96762

ATGAGTAAACAAGATATGATGAAAATTCAGGTACAACCTTGTTCTTCTTACTTATTTTTTTTTTTAGTCTTGTGTTCACAAGTTAATTAAAGTACCTAGTTAAAGTTGAATCTGTACTTATGTTTAACTGGTTTTTGGTTTGTTTGTTTCTTCTGTAGAATTGTCTTCTCAAGGTTAATATCCATTGTGAAGGTTGTGAGCAGAAGGTTAAGAAACTGCTTCAGAAAATTGAAGGTACATTTATACCATGTCTCTTTCTTCTTTTCTTGTTTTTCTTCTTTTCAAATTGTTAGAATTTAGTTCACATGTTAACTTTACTATGTCGGTTTCTGTCAAAAAAAAAACAAAAACAAAAACTTTACTATGTCGGTTAACATTTTCCCATGTTTCTAAACCCTCCTTAATTTCATGTTTTTTTCCTTCATTCATCCAAAGTTTCCAACTTTATGATGTTTTTGTGAACTTTTTAATGTTTATAAGGTTTTGTGTTGTGTGCTAGTTTAGTTTTGAAGTTGATTATGTGTTAAGTTATGATGTTAAAGATTGTTTTTTTACACGTTTATGTTGTTGTTGTTGCGATGCAGGGGTGTATTCTGTGAATATAGATGCAGAACAAGGGAAGGTGTTGGTGACAGGTGATGTAGATCCAGCAAAGCTCCTCAAAAAGCTGAAAAGTTCAGGGAAACATGCTGAACTATGGGGTGGACAGAAAGCTATGATGATTAATCAAAATCAAAACTTTCAACAACAACAACCTCAGTTTAAGAACATGCAAATGGATAATAACAAAGGGGGTAAGAACAACAAGCCTCAGAATCAAAAGGGTCAAAAAGGTGGTGTTCAAGTAGCACAGTTTCAAAATCCTAAAGGAGGAAAAGATATGAAAGTGCCCAACAAATCTCAGAAACATGTTAATTTTGATTTGTCTGAGGAGGAATTTGATGAGAGTGATGGTGATTTTGATGACTATGACGATGATTTTGATGAGGATGAAGAAGAGGAGTTTGGTCACGGACATGGTCATGGCCATGGTCAAGGGCCTCCAGGCAATGGATTTGGGCAGCATCCTATGCATAATAACAAGATGATGATGGCTATGATGCAGAATGGTCGTGGGCCACAGCTAGGGCCTGGTGATGGTATGATGATGAATGGGCCTGCTGCCATGAACATCCCAGGTAATGGTAAAGGAGGAGGGGGTGGTAATTATGCAAAAGCCAAAAAAGGAGATATTATGGATCTACCTATGCAAATGCAGATGAAGGGTAAAAGTGGAAATTACGGTGAGGTAAAAAATGGTAATGGAGGTGGTAAGAAAGGGGGTGATGATGGAGGTAAGAAGAATAAAGGGGAAAAGCAAAAGGGTGGTGGGGGAGATTGGGGAGATGAAAAAAATAGTAGCAAGAAGAAAAATGGTAAAGGTAAAAACGGTGGTGGTGGTTTTCTAGTTAAGTTTCTAGGGCTTGGAAAAAAGAGCAAAAAGGGAGGAGGTGCAGCCGACAAGAACAAAAACAATGGAGGAGGTGGAAATAGCAATAGCAACAACAACAGCAAAGGGAAAGAAGGTAAGAAAGGTGAAAAATTGGATAAAGTTGAATTTGATTTCCAAGACTTTGATATCACTCCTCATAGTAAAAGTGTTAAGGGTGGAAATGGAAATGGGAAAGGTGCTCCTGCCAAGGGCAATGCCAATAATGGACATGGTAATAATAATGGTAATGGGGGCCATATGGGTCCAATGGGCCAGATGGGTGCAATGAATCAGATGGCAGCAATGAATAAGATGGGTCCAATGGGTCAGATGGGTTCAATGGACCAAATGAGGAGCATGCCGGCAGTGCAAGGGTTACCGGCCGGGGCAGCTGCGGCGATGAATGGTGGCTATTATCAAGGAATGCAGCAGATGCAACCAAATCCTTATCAGCAACAACAGCAGCAGCAACAACAACAACAGCAATACATGGCTATGATGATGCAGCAGCAACAGCAGCAACAAATGCAGCAGCAACTGCAGCAACAACAAATGCAGCAAGGAAATATGAACAGCATGTATCCACAACATATGATGTATGGAGGAGGAAGGCCACATCCATCAATGAACTATATGGGACCGCCACCAATGCCATCACACCCTATGGCAGATCCAATCACTCATGTTTTCAGTGATGAGAACACTGAGAGCTGTAGCATCATGTAA
Protein sequence

>MS.gene96762.t1

MSKQDMMKIQNCLLKVNIHCEGCEQKVKKLLQKIEGVYSVNIDAEQGKVLVTGDVDPAKLLKKLKSSGKHAELWGGQKAMMINQNQNFQQQQPQFKNMQMDNNKGGKNNKPQNQKGQKGGVQVAQFQNPKGGKDMKVPNKSQKHVNFDLSEEEFDESDGDFDDYDDDFDEDEEEEFGHGHGHGHGQGPPGNGFGQHPMHNNKMMMAMMQNGRGPQLGPGDGMMMNGPAAMNIPGNGKGGGGGNYAKAKKGDIMDLPMQMQMKGKSGNYGEVKNGNGGGKKGGDDGGKKNKGEKQKGGGGDWGDEKNSSKKKNGKGKNGGGGFLVKFLGLGKKSKKGGGAADKNKNNGGGGNSNSNNNSKGKEGKKGEKLDKVEFDFQDFDITPHSKSVKGGNGNGKGAPAKGNANNGHGNNNGNGGHMGPMGQMGAMNQMAAMNKMGPMGQMGSMDQMRSMPAVQGLPAGAAAAMNGGYYQGMQQMQPNPYQQQQQQQQQQQQYMAMMMQQQQQQQMQQQLQQQQMQQGNMNSMYPQHMMYGGGRPHPSMNYMGPPPMPSHPMADPITHVFSDENTESCSIM