AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene97007


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97007.t1 MTR_7g096870 97.388 536 14 0 1 536 1 536 0.0 1083
MS.gene97007.t1 MTR_7g096880 90.449 534 49 1 1 534 1 532 0.0 961
MS.gene97007.t1 MTR_1g069935 85.164 519 77 0 1 519 1 519 0.0 941
MS.gene97007.t1 MTR_3g082700 75.556 540 129 1 1 537 1 540 0.0 837
MS.gene97007.t1 MTR_1g069930 75.146 515 127 1 1 514 1 515 0.0 835
MS.gene97007.t1 MTR_1g074930 76.641 518 117 2 5 518 4 521 0.0 832
MS.gene97007.t1 MTR_1g043220 75.188 532 128 2 5 532 4 535 0.0 822
MS.gene97007.t1 MTR_1g043200 76.091 527 120 3 5 527 4 528 0.0 816
MS.gene97007.t1 MTR_1g074940 76.459 514 101 4 1 508 1 500 0.0 812
MS.gene97007.t1 MTR_1g043290 75.285 526 126 2 5 526 4 529 0.0 812
MS.gene97007.t1 MTR_1g028600 60.075 531 189 4 6 524 3 522 0.0 635
MS.gene97007.t1 MTR_5g068140 57.537 544 203 4 8 532 7 541 0.0 619
MS.gene97007.t1 MTR_4g083960 51.866 536 227 12 6 534 5 516 1.30e-180 518
MS.gene97007.t1 MTR_7g005910 23.491 464 274 17 87 532 92 492 7.41e-14 74.3
MS.gene97007.t1 MTR_3g084110 21.573 445 293 14 76 512 76 472 2.25e-13 72.8
MS.gene97007.t1 MTR_7g446340 23.555 467 292 17 76 527 104 520 2.63e-12 69.7
MS.gene97007.t1 MTR_6g007340 23.555 467 292 17 76 527 104 520 2.63e-12 69.7
MS.gene97007.t1 MTR_6g088450 25.564 399 245 12 81 463 108 470 5.62e-12 68.6
MS.gene97007.t1 MTR_1g116660 21.429 434 277 14 90 511 97 478 5.64e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97007.t1 AT2G38940 84.884 516 75 1 1 513 1 516 0.0 927
MS.gene97007.t1 AT3G54700 84.363 518 80 1 1 518 1 517 0.0 926
MS.gene97007.t1 AT3G54700 84.363 518 80 1 1 518 1 517 0.0 926
MS.gene97007.t1 AT2G32830 73.937 541 137 1 1 537 1 541 0.0 852
MS.gene97007.t1 AT5G43360 78.077 520 112 1 1 518 1 520 0.0 839
MS.gene97007.t1 AT5G43350 77.992 518 112 1 1 516 1 518 0.0 837
MS.gene97007.t1 AT5G43370 77.799 518 113 1 1 516 1 518 0.0 809
MS.gene97007.t1 AT5G43370 77.799 518 113 1 1 516 1 518 0.0 809
MS.gene97007.t1 AT5G43340 66.988 518 156 2 3 518 4 508 0.0 736
MS.gene97007.t1 AT1G20860 48.785 535 256 9 6 533 3 526 1.58e-173 501
MS.gene97007.t1 AT1G76430 47.672 537 252 11 5 528 3 523 2.61e-173 500
MS.gene97007.t1 AT1G20860 48.785 535 256 9 6 533 55 578 8.72e-173 501
MS.gene97007.t1 AT4G08878 68.487 238 75 0 31 268 13 250 3.36e-115 342
MS.gene97007.t1 AT4G08895 56.643 143 30 1 318 460 23 133 3.81e-47 162
MS.gene97007.t1 AT2G43330 22.973 444 259 17 90 511 93 475 1.35e-11 67.4

Find 139 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTCTTCTTTGCAAATTT+TGG -0.031518 7.4:-12732700 MS.gene97007:CDS
CCCTTTGCTTCTTCCGGTTT+TGG 0.142326 7.4:-12733542 MS.gene97007:CDS
TATCCTTCTGGAAGAGATTT+TGG 0.150755 7.4:+12732995 None:intergenic
GCTTTCTGTGGAACACTTTC+AGG 0.150980 7.4:-12733699 MS.gene97007:CDS
CATGCAGGGTTTCGGAATTT+TGG 0.151969 7.4:-12733418 MS.gene97007:CDS
GTTGGGATGTTGTAACATTT+TGG 0.179506 7.4:-12732473 MS.gene97007:CDS
TGCATTCGGGTTCTTGTATT+TGG 0.192044 7.4:-12732569 MS.gene97007:CDS
GCGGTATAACGAGCAGTTTC+TGG 0.246126 7.4:+12733219 None:intergenic
GTTATCTGTTCAATTGGTTC+TGG 0.268162 7.4:-12733603 MS.gene97007:CDS
AGGGTTGTCATGACAGATTT+TGG 0.291172 7.4:+12733561 None:intergenic
GGGGCTATAGTTGGTGCATT+CGG 0.293505 7.4:-12732583 MS.gene97007:CDS
ATTGGTTCTGGTCTTTCTTT+CGG 0.310334 7.4:-12733591 MS.gene97007:CDS
AACCTCCTCAAGTGCATTCA+TGG 0.318200 7.4:+12732936 None:intergenic
TGACAACCCTTTGCTTCTTC+CGG 0.331448 7.4:-12733548 MS.gene97007:CDS
ATTAGAATACTCCGACATTA+TGG 0.331666 7.4:+12733479 None:intergenic
CTTCTCCTCTTTCTGTGGTT+CGG 0.335668 7.4:+12733128 None:intergenic
CATAATTTCATCTGCATTCA+AGG 0.338184 7.4:-12733376 MS.gene97007:CDS
GTCTTTGCCATGCAGGGTTT+CGG 0.339550 7.4:-12733426 MS.gene97007:CDS
GGGCTATAGTTGGTGCATTC+GGG 0.341772 7.4:-12732582 MS.gene97007:CDS
TTGCACTGAAAATATCCTTC+TGG 0.362845 7.4:+12732983 None:intergenic
TTCCCCAAGCAGACTACATT+TGG 0.372520 7.4:-12733305 MS.gene97007:CDS
CCTCCAAATGTAGTCTGCTT+GGG 0.372673 7.4:+12733302 None:intergenic
GCAGTACAGTACCAGGCTAT+TGG 0.376413 7.4:-12732876 MS.gene97007:CDS
AAGATTTACCATCCAATTGA+TGG 0.386978 7.4:-12732824 MS.gene97007:CDS
TGGTGGTGACTACCCTCTTT+CGG 0.394304 7.4:-12733505 MS.gene97007:CDS
TGCAGCAGTCTTTGCCATGC+AGG 0.397867 7.4:-12733433 MS.gene97007:CDS
ACAACAAATGTTGTAGCATT+AGG 0.400761 7.4:+12732676 None:intergenic
TAAAGAAGAATCCCATCAAT+TGG 0.402453 7.4:+12732812 None:intergenic
CATCCGCATCGGGAAAGCTT+GGG 0.403184 7.4:-12732603 MS.gene97007:CDS
TAGCACCTCAATTTGATCCT+TGG 0.413690 7.4:+12733923 None:intergenic
TCCTCCAAATGTAGTCTGCT+TGG 0.420387 7.4:+12733301 None:intergenic
TACCGAACCCAAGCCAAAAC+CGG 0.427494 7.4:+12733529 None:intergenic
TGGCTGGCTTGGTGATAAGA+TGG 0.431799 7.4:-12733664 MS.gene97007:CDS
GGTGAGAATGATGAGGAAGT+TGG 0.432793 7.4:-12732391 MS.gene97007:CDS
GGCAAATGGAAAATCTTTAG+AGG 0.436138 7.4:-12732422 MS.gene97007:CDS
CGCATATACTACCACGTTGA+TGG 0.442218 7.4:-12733777 MS.gene97007:CDS
GCAGGGTACCCTGCAGGTAT+TGG 0.442599 7.4:-12732517 MS.gene97007:CDS
TCCCTTGTTACCAAGTTGCT+TGG 0.445710 7.4:-12733801 MS.gene97007:CDS
ATGATGGTTATCTGTTCAAT+TGG 0.447387 7.4:-12733609 MS.gene97007:CDS
GGCAAAGACTGCTGCAATGA+AGG 0.448745 7.4:+12733440 None:intergenic
TGCAATCATCATAGCTGGTA+TGG 0.448896 7.4:-12733859 MS.gene97007:CDS
AGCTGCAGCAGATATGTCTA+AGG 0.462417 7.4:-12733172 MS.gene97007:CDS
TTATGAGTCCAGTGTTCATA+AGG 0.464297 7.4:+12732760 None:intergenic
GGCTGGCTTGGTGATAAGAT+GGG 0.464364 7.4:-12733663 MS.gene97007:CDS
TCATCCGCATCGGGAAAGCT+TGG 0.465982 7.4:-12732604 MS.gene97007:CDS
GACAAGAGTAAAGCAGATGC+AGG 0.466575 7.4:-12732535 MS.gene97007:CDS
AAGGAAAAGGCTAAATCATA+TGG 0.468204 7.4:-12733108 MS.gene97007:CDS
GAGTAGTAAGTCATTGCAGC+TGG 0.469391 7.4:+12733255 None:intergenic
TGGGGAACAGTTGAACCAAC+TGG 0.470918 7.4:+12733321 None:intergenic
ACATCACCACAAATCCTATT+CGG 0.472436 7.4:+12732731 None:intergenic
ATTCACAGCAGCTGATACAT+TGG 0.472564 7.4:+12733728 None:intergenic
TTCTTAGTACCCGAGGCAAA+TGG 0.472965 7.4:-12732436 MS.gene97007:CDS
GTGAATGGTGTTGCTTTCTG+TGG 0.474993 7.4:-12733711 MS.gene97007:CDS
ACTCATAAGGATAACCGAAT+AGG 0.475963 7.4:-12732745 MS.gene97007:CDS
TGAAGCCGAACCACAGAAAG+AGG 0.480495 7.4:-12733133 MS.gene97007:CDS
GACATTATGGTAGCCGAAAG+AGG 0.481182 7.4:+12733492 None:intergenic
TTTCATCTGCATTCAAGGCC+AGG 0.481632 7.4:-12733371 MS.gene97007:CDS
TGGCTTGGGTTCGGTATTGG+TGG 0.492801 7.4:-12733522 MS.gene97007:CDS
CTTGTATTTGGCACAAAACA+AGG 0.497426 7.4:-12732557 MS.gene97007:CDS
TTATGAACACTGGACTCATA+AGG 0.499390 7.4:-12732758 MS.gene97007:CDS
CCCAAAATTTGCAAAGAAGA+AGG 0.507277 7.4:+12732699 None:intergenic
TACATTGGGAGGCAATGTAC+CGG 0.509415 7.4:+12733743 None:intergenic
CCCAAGCAGACTACATTTGG+AGG 0.513096 7.4:-12733302 MS.gene97007:CDS
AGTGCATTCATGGTTTGTGC+AGG 0.513709 7.4:+12732946 None:intergenic
GGAAAGCTTGGGGCTATAGT+TGG 0.514607 7.4:-12732592 MS.gene97007:CDS
GCAGCAGTCTTTGCCATGCA+GGG 0.514618 7.4:-12733432 MS.gene97007:CDS
AGATTTACCATCCAATTGAT+GGG 0.514693 7.4:-12732823 MS.gene97007:CDS
CAAGTTGATCGAAATCTAGC+TGG 0.515101 7.4:+12732637 None:intergenic
TTCACTGCAATCATCATAGC+TGG 0.515551 7.4:-12733864 MS.gene97007:CDS
ACAGAAAGAGGAGAAGGAAA+AGG 0.518948 7.4:-12733121 MS.gene97007:CDS
GGATAACCGAATAGGATTTG+TGG 0.523531 7.4:-12732737 MS.gene97007:CDS
CATGGAATATCATCCGCATC+GGG 0.524513 7.4:-12732613 MS.gene97007:CDS
GGCTTGGTGATAAGATGGGC+AGG 0.528400 7.4:-12733659 MS.gene97007:CDS
GCCAAAACCGGAAGAAGCAA+AGG 0.528845 7.4:+12733541 None:intergenic
CTATGATGATTGCAGTGAAA+TGG 0.528943 7.4:+12733868 None:intergenic
GCATTCATGGTTTGTGCAGG+AGG 0.529180 7.4:+12732949 None:intergenic
TTCTTCATACCAATACCTGC+AGG 0.529263 7.4:+12732508 None:intergenic
CGAACCACAGAAAGAGGAGA+AGG 0.530308 7.4:-12733127 MS.gene97007:CDS
TTCACAGCAGCTGATACATT+GGG 0.530334 7.4:+12733729 None:intergenic
CGTCATGGACTACATTTGCT+TGG 0.532151 7.4:-12733060 MS.gene97007:CDS
GTGGCTTTCATAGACAGAAT+AGG 0.532759 7.4:-12732847 MS.gene97007:CDS
AGATTTCGATCAACTTGCCA+TGG 0.539975 7.4:-12732631 MS.gene97007:CDS
AATGTATCAGCTGCTGTGAA+TGG 0.543645 7.4:-12733726 MS.gene97007:CDS
GCAGATGCAGGGTACCCTGC+AGG 0.546146 7.4:-12732523 MS.gene97007:CDS
GTTGATGGTGCAGCAAAGCC+CGG 0.548274 7.4:-12733762 MS.gene97007:CDS
GGCTTGAATAGTCATGGCCA+AGG 0.551613 7.4:-12733940 None:intergenic
AAATCTTTAGAGGAAATGTC+AGG 0.557207 7.4:-12732412 MS.gene97007:CDS
CCATGGAATATCATCCGCAT+CGG 0.559707 7.4:-12732614 MS.gene97007:CDS
TCTTACGAGGTTGATCCAGT+TGG 0.560435 7.4:-12733336 MS.gene97007:CDS
TGGAGGATAATTGTGATGGT+AGG 0.563401 7.4:-12733285 MS.gene97007:CDS
TGCTTGGTACAACAAGCACT+TGG 0.567808 7.4:-12733044 MS.gene97007:CDS
GCAATCATCATAGCTGGTAT+GGG 0.570874 7.4:-12733858 MS.gene97007:CDS
GAAGAATCCCATCAATTGGA+TGG 0.573451 7.4:+12732816 None:intergenic
TTGCCGTTCCTTATGAACAC+TGG 0.573936 7.4:-12732768 MS.gene97007:CDS
ACATTGGGAGGCAATGTACC+GGG 0.578245 7.4:+12733744 None:intergenic
CATTCATGGTTTGTGCAGGA+GGG 0.580236 7.4:+12732950 None:intergenic
TAGCCAAAATCTCTTCCAGA+AGG 0.581352 7.4:-12732998 MS.gene97007:CDS
GCCACGGTAAACCAATAGCC+TGG 0.581737 7.4:+12732865 None:intergenic
GCTCTATGCAGTACAGTACC+AGG 0.583363 7.4:-12732883 MS.gene97007:CDS
AAAGAGTTCATGAGTCGTCA+TGG 0.583437 7.4:-12733075 MS.gene97007:CDS
TGGTATGACCCTCATGATGA+TGG 0.586953 7.4:-12733625 MS.gene97007:CDS
AACCATGAATGCACTTGAGG+AGG 0.589777 7.4:-12732938 MS.gene97007:CDS
CCGATGCGGATGATATTCCA+TGG 0.591183 7.4:+12732614 None:intergenic
CATGGCCAAGGATCAAATTG+AGG 0.592004 7.4:-12733928 MS.gene97007:CDS
CCAAAACCGGAAGAAGCAAA+GGG 0.592671 7.4:+12733542 None:intergenic
AGCCCCAAGCTTTCCCGATG+CGG 0.596062 7.4:+12732600 None:intergenic
CTCCAAATGTAGTCTGCTTG+GGG 0.596396 7.4:+12733303 None:intergenic
ATCCGCATCGGGAAAGCTTG+GGG 0.597584 7.4:-12732602 MS.gene97007:CDS
GACCAAGCAACTTGGTAACA+AGG 0.600091 7.4:+12733799 None:intergenic
AATGTCAGGTGAGAATGATG+AGG 0.605492 7.4:-12732398 MS.gene97007:CDS
GTATATGCGACCAAGCAACT+TGG 0.611196 7.4:+12733791 None:intergenic
CATTTGGAGGATAATTGTGA+TGG 0.611828 7.4:-12733289 MS.gene97007:CDS
GCGTTGTTATTCTGAGCATG+AGG 0.612504 7.4:+12732346 None:intergenic
GTTTGATTCTCCGTCTTACG+AGG 0.613183 7.4:-12733349 MS.gene97007:CDS
ACTGGATCAACCTCGTAAGA+CGG 0.613448 7.4:+12733339 None:intergenic
ACAAACCATGAATGCACTTG+AGG 0.613620 7.4:-12732941 MS.gene97007:CDS
AGTAGTAAGTCATTGCAGCT+GGG 0.615517 7.4:+12733256 None:intergenic
AGTCCAGTGTTCATAAGGAA+CGG 0.616856 7.4:+12732765 None:intergenic
AACAGATAACCATCATCATG+AGG 0.618082 7.4:+12733616 None:intergenic
AACGGCAAGAGCAAACATGA+AGG 0.619751 7.4:+12732783 None:intergenic
ACATTATGGTAGCCGAAAGA+GGG 0.623125 7.4:+12733493 None:intergenic
ACCAGGCTATTGGTTTACCG+TGG 0.630346 7.4:-12732866 MS.gene97007:CDS
TATTCTGTCTATGAAAGCCA+CGG 0.630634 7.4:+12732849 None:intergenic
GGTGCTAAATGCGCTTGATG+TGG 0.631666 7.4:-12733907 MS.gene97007:CDS
ATTTGCAAAGAAGAAGGTCA+AGG 0.633508 7.4:+12732705 None:intergenic
GTGCACTTTCTTAGTACCCG+AGG 0.637975 7.4:-12732443 MS.gene97007:CDS
CAAAATTCCGAAACCCTGCA+TGG 0.639934 7.4:+12733419 None:intergenic
ACCAAGCAACTTGGTAACAA+GGG 0.642899 7.4:+12733800 None:intergenic
ACAGCAGCTGATACATTGGG+AGG 0.653095 7.4:+12733732 None:intergenic
ACAAGAGTAAAGCAGATGCA+GGG 0.657371 7.4:-12732534 MS.gene97007:CDS
TCTTTCGGCTACCATAATGT+CGG 0.663564 7.4:-12733490 MS.gene97007:CDS
GTAAGACGGAGAATCAAACC+TGG 0.669834 7.4:+12733353 None:intergenic
CTGCAATGACTTACTACTCG+CGG 0.671835 7.4:-12733251 MS.gene97007:CDS
ACAGATAACCATCATCATGA+GGG 0.673555 7.4:+12733617 None:intergenic
GGCAAGAGCAAACATGAAGG+CGG 0.686722 7.4:+12732786 None:intergenic
TCTTCATACCAATACCTGCA+GGG 0.687460 7.4:+12732509 None:intergenic
TGTGTTCTTAGCAACTAAAG+CGG 0.693409 7.4:+12733200 None:intergenic
TTGATGTGGCTAAAACACAA+TGG 0.704796 7.4:-12733893 MS.gene97007:CDS
GCTTTGCTGCACCATCAACG+TGG 0.731004 7.4:+12733766 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAATTCATTGATTTTGTT+GGG - chr7.4:12733773-12733792 MS.gene97007:CDS 20.0%
! ATTCTAATAAAAAGACTCGT+GGG - chr7.4:12732799-12732818 MS.gene97007:CDS 25.0%
! TATTCTAATAAAAAGACTCG+TGG - chr7.4:12732798-12732817 MS.gene97007:CDS 25.0%
!!! GAAGAATTCATTGATTTTGT+TGG - chr7.4:12733772-12733791 MS.gene97007:CDS 25.0%
AAGATTTACCATCCAATTGA+TGG - chr7.4:12733439-12733458 MS.gene97007:CDS 30.0%
AAGGAAAAGGCTAAATCATA+TGG - chr7.4:12733155-12733174 MS.gene97007:CDS 30.0%
ACAACAAATGTTGTAGCATT+AGG + chr7.4:12733590-12733609 None:intergenic 30.0%
AGATTTACCATCCAATTGAT+GGG - chr7.4:12733440-12733459 MS.gene97007:CDS 30.0%
ATGATGGTTATCTGTTCAAT+TGG - chr7.4:12732654-12732673 MS.gene97007:CDS 30.0%
ATTAGAATACTCCGACATTA+TGG + chr7.4:12732787-12732806 None:intergenic 30.0%
CATAATTTCATCTGCATTCA+AGG - chr7.4:12732887-12732906 MS.gene97007:CDS 30.0%
TAAAGAAGAATCCCATCAAT+TGG + chr7.4:12733454-12733473 None:intergenic 30.0%
TTCTAATAAAAAGACTCGTG+GGG - chr7.4:12732800-12732819 MS.gene97007:CDS 30.0%
! AAATCTTTAGAGGAAATGTC+AGG - chr7.4:12733851-12733870 MS.gene97007:CDS 30.0%
! AAGGATATTTTCAGTGCAAT+TGG - chr7.4:12733284-12733303 MS.gene97007:CDS 30.0%
! ACCTTCTTCTTTGCAAATTT+TGG - chr7.4:12733563-12733582 MS.gene97007:CDS 30.0%
! ATATTTTCAGTGCAATTGGT+TGG - chr7.4:12733288-12733307 MS.gene97007:CDS 30.0%
! CCTTCTTCTTTGCAAATTTT+GGG - chr7.4:12733564-12733583 MS.gene97007:CDS 30.0%
! TAAAGATTTTCCATTTGCCT+CGG + chr7.4:12733840-12733859 None:intergenic 30.0%
! TTGGGATGTTGTAACATTTT+GGG - chr7.4:12733791-12733810 MS.gene97007:CDS 30.0%
AACAGATAACCATCATCATG+AGG + chr7.4:12732650-12732669 None:intergenic 35.0%
ACAGATAACCATCATCATGA+GGG + chr7.4:12732649-12732668 None:intergenic 35.0%
ACATCACCACAAATCCTATT+CGG + chr7.4:12733535-12733554 None:intergenic 35.0%
ACTCATAAGGATAACCGAAT+AGG - chr7.4:12733518-12733537 MS.gene97007:CDS 35.0%
ATTTGCAAAGAAGAAGGTCA+AGG + chr7.4:12733561-12733580 None:intergenic 35.0%
CATTTGGAGGATAATTGTGA+TGG - chr7.4:12732974-12732993 MS.gene97007:CDS 35.0%
CCCAAAATTTGCAAAGAAGA+AGG + chr7.4:12733567-12733586 None:intergenic 35.0%
CTATGATGATTGCAGTGAAA+TGG + chr7.4:12732398-12732417 None:intergenic 35.0%
CTTGTATTTGGCACAAAACA+AGG - chr7.4:12733706-12733725 MS.gene97007:CDS 35.0%
GGCAAATGGAAAATCTTTAG+AGG - chr7.4:12733841-12733860 MS.gene97007:CDS 35.0%
TATTCTGTCTATGAAAGCCA+CGG + chr7.4:12733417-12733436 None:intergenic 35.0%
TGTGTTCTTAGCAACTAAAG+CGG + chr7.4:12733066-12733085 None:intergenic 35.0%
TTATGAACACTGGACTCATA+AGG - chr7.4:12733505-12733524 MS.gene97007:CDS 35.0%
TTATGAGTCCAGTGTTCATA+AGG + chr7.4:12733506-12733525 None:intergenic 35.0%
TTGATGTGGCTAAAACACAA+TGG - chr7.4:12732370-12732389 MS.gene97007:CDS 35.0%
TTGCACTGAAAATATCCTTC+TGG + chr7.4:12733283-12733302 None:intergenic 35.0%
! AAAGATTTTCCATTTGCCTC+GGG + chr7.4:12733839-12733858 None:intergenic 35.0%
! CTTTCAGGACAACTTTTCTT+TGG - chr7.4:12732579-12732598 MS.gene97007:CDS 35.0%
! GTTATCTGTTCAATTGGTTC+TGG - chr7.4:12732660-12732679 MS.gene97007:CDS 35.0%
! GTTGGGATGTTGTAACATTT+TGG - chr7.4:12733790-12733809 MS.gene97007:CDS 35.0%
! TGGGATGTTGTAACATTTTG+GGG - chr7.4:12733792-12733811 MS.gene97007:CDS 35.0%
!! AGATATGTCTAAGGTTTTGC+AGG - chr7.4:12733100-12733119 MS.gene97007:CDS 35.0%
!! ATTGGTTCTGGTCTTTCTTT+CGG - chr7.4:12732672-12732691 MS.gene97007:CDS 35.0%
!! TATCCTTCTGGAAGAGATTT+TGG + chr7.4:12733271-12733290 None:intergenic 35.0%
AAAGAGTTCATGAGTCGTCA+TGG - chr7.4:12733188-12733207 MS.gene97007:CDS 40.0%
AATGTATCAGCTGCTGTGAA+TGG - chr7.4:12732537-12732556 MS.gene97007:CDS 40.0%
AATGTCAGGTGAGAATGATG+AGG - chr7.4:12733865-12733884 MS.gene97007:CDS 40.0%
ACAAACCATGAATGCACTTG+AGG - chr7.4:12733322-12733341 MS.gene97007:CDS 40.0%
ACAAGAGTAAAGCAGATGCA+GGG - chr7.4:12733729-12733748 MS.gene97007:CDS 40.0%
ACAGAAAGAGGAGAAGGAAA+AGG - chr7.4:12733142-12733161 MS.gene97007:CDS 40.0%
ACATTATGGTAGCCGAAAGA+GGG + chr7.4:12732773-12732792 None:intergenic 40.0%
AGATTTCGATCAACTTGCCA+TGG - chr7.4:12733632-12733651 MS.gene97007:CDS 40.0%
AGTAGTAAGTCATTGCAGCT+GGG + chr7.4:12733010-12733029 None:intergenic 40.0%
AGTCCAGTGTTCATAAGGAA+CGG + chr7.4:12733501-12733520 None:intergenic 40.0%
ATGGGCAGGAAAAAAGTCTA+TGG - chr7.4:12732618-12732637 MS.gene97007:CDS 40.0%
ATTCACAGCAGCTGATACAT+TGG + chr7.4:12732538-12732557 None:intergenic 40.0%
GAAGAATCCCATCAATTGGA+TGG + chr7.4:12733450-12733469 None:intergenic 40.0%
GCAATCATCATAGCTGGTAT+GGG - chr7.4:12732405-12732424 MS.gene97007:CDS 40.0%
GGATAACCGAATAGGATTTG+TGG - chr7.4:12733526-12733545 MS.gene97007:CDS 40.0%
GTGGCTTTCATAGACAGAAT+AGG - chr7.4:12733416-12733435 MS.gene97007:CDS 40.0%
TAGCACCTCAATTTGATCCT+TGG + chr7.4:12732343-12732362 None:intergenic 40.0%
TAGCCAAAATCTCTTCCAGA+AGG - chr7.4:12733265-12733284 MS.gene97007:CDS 40.0%
TCTTCATACCAATACCTGCA+GGG + chr7.4:12733757-12733776 None:intergenic 40.0%
TCTTTCGGCTACCATAATGT+CGG - chr7.4:12732773-12732792 MS.gene97007:CDS 40.0%
TGCAATCATCATAGCTGGTA+TGG - chr7.4:12732404-12732423 MS.gene97007:CDS 40.0%
TGGAGGATAATTGTGATGGT+AGG - chr7.4:12732978-12732997 MS.gene97007:CDS 40.0%
TTCACAGCAGCTGATACATT+GGG + chr7.4:12732537-12732556 None:intergenic 40.0%
TTCACTGCAATCATCATAGC+TGG - chr7.4:12732399-12732418 MS.gene97007:CDS 40.0%
TTCTTCATACCAATACCTGC+AGG + chr7.4:12733758-12733777 None:intergenic 40.0%
! ACCAAGCAACTTGGTAACAA+GGG + chr7.4:12732466-12732485 None:intergenic 40.0%
! AGGGTTGTCATGACAGATTT+TGG + chr7.4:12732705-12732724 None:intergenic 40.0%
! ATGCAGGGTTTCGGAATTTT+GGG - chr7.4:12732846-12732865 MS.gene97007:CDS 40.0%
! TGCATTCGGGTTCTTGTATT+TGG - chr7.4:12733694-12733713 MS.gene97007:CDS 40.0%
! TTTTCCTTCTCCTCTTTCTG+TGG + chr7.4:12733143-12733162 None:intergenic 40.0%
!! CAAGTTGATCGAAATCTAGC+TGG + chr7.4:12733629-12733648 None:intergenic 40.0%
AACCATGAATGCACTTGAGG+AGG - chr7.4:12733325-12733344 MS.gene97007:CDS 45.0%
AACCTCCTCAAGTGCATTCA+TGG + chr7.4:12733330-12733349 None:intergenic 45.0%
AACGGCAAGAGCAAACATGA+AGG + chr7.4:12733483-12733502 None:intergenic 45.0%
ACTGGATCAACCTCGTAAGA+CGG + chr7.4:12732927-12732946 None:intergenic 45.0%
AGCTGCAGCAGATATGTCTA+AGG - chr7.4:12733091-12733110 MS.gene97007:CDS 45.0%
CAAAATTCCGAAACCCTGCA+TGG + chr7.4:12732847-12732866 None:intergenic 45.0%
CATGGAATATCATCCGCATC+GGG - chr7.4:12733650-12733669 MS.gene97007:CDS 45.0%
CCAAAACCGGAAGAAGCAAA+GGG + chr7.4:12732724-12732743 None:intergenic 45.0%
CCATGGAATATCATCCGCAT+CGG - chr7.4:12733649-12733668 MS.gene97007:CDS 45.0%
CCTCCAAATGTAGTCTGCTT+GGG + chr7.4:12732964-12732983 None:intergenic 45.0%
CGCATATACTACCACGTTGA+TGG - chr7.4:12732486-12732505 MS.gene97007:CDS 45.0%
CTAGCTGGAAAAATCTCTGC+TGG + chr7.4:12733614-12733633 None:intergenic 45.0%
CTCCAAATGTAGTCTGCTTG+GGG + chr7.4:12732963-12732982 None:intergenic 45.0%
CTGCAATGACTTACTACTCG+CGG - chr7.4:12733012-12733031 MS.gene97007:CDS 45.0%
CTTCTCCTCTTTCTGTGGTT+CGG + chr7.4:12733138-12733157 None:intergenic 45.0%
GACAAGAGTAAAGCAGATGC+AGG - chr7.4:12733728-12733747 MS.gene97007:CDS 45.0%
GACATTATGGTAGCCGAAAG+AGG + chr7.4:12732774-12732793 None:intergenic 45.0%
GAGTAGTAAGTCATTGCAGC+TGG + chr7.4:12733011-12733030 None:intergenic 45.0%
GCTTTCTGTGGAACACTTTC+AGG - chr7.4:12732564-12732583 MS.gene97007:CDS 45.0%
GGTGAGAATGATGAGGAAGT+TGG - chr7.4:12733872-12733891 MS.gene97007:CDS 45.0%
GTAAGACGGAGAATCAAACC+TGG + chr7.4:12732913-12732932 None:intergenic 45.0%
GTATATGCGACCAAGCAACT+TGG + chr7.4:12732475-12732494 None:intergenic 45.0%
GTTTGATTCTCCGTCTTACG+AGG - chr7.4:12732914-12732933 MS.gene97007:CDS 45.0%
TACATTGGGAGGCAATGTAC+CGG + chr7.4:12732523-12732542 None:intergenic 45.0%
TCCCTTGTTACCAAGTTGCT+TGG - chr7.4:12732462-12732481 MS.gene97007:CDS 45.0%
TCCTCCAAATGTAGTCTGCT+TGG + chr7.4:12732965-12732984 None:intergenic 45.0%
TGACAACCCTTTGCTTCTTC+CGG - chr7.4:12732715-12732734 MS.gene97007:CDS 45.0%
TGCTTGGTACAACAAGCACT+TGG - chr7.4:12733219-12733238 MS.gene97007:CDS 45.0%
TGGTATGACCCTCATGATGA+TGG - chr7.4:12732638-12732657 MS.gene97007:CDS 45.0%
TTCCCCAAGCAGACTACATT+TGG - chr7.4:12732958-12732977 MS.gene97007:CDS 45.0%
TTCTTAGTACCCGAGGCAAA+TGG - chr7.4:12733827-12733846 MS.gene97007:CDS 45.0%
TTGCCGTTCCTTATGAACAC+TGG - chr7.4:12733495-12733514 MS.gene97007:CDS 45.0%
TTTCATCTGCATTCAAGGCC+AGG - chr7.4:12732892-12732911 MS.gene97007:CDS 45.0%
! AGTGCATTCATGGTTTGTGC+AGG + chr7.4:12733320-12733339 None:intergenic 45.0%
! CAGGACAACTTTTCTTTGGC+TGG - chr7.4:12732583-12732602 MS.gene97007:CDS 45.0%
! CATGCAGGGTTTCGGAATTT+TGG - chr7.4:12732845-12732864 MS.gene97007:CDS 45.0%
! CATTCATGGTTTGTGCAGGA+GGG + chr7.4:12733316-12733335 None:intergenic 45.0%
! CGTCATGGACTACATTTGCT+TGG - chr7.4:12733203-12733222 MS.gene97007:CDS 45.0%
! GACCAAGCAACTTGGTAACA+AGG + chr7.4:12732467-12732486 None:intergenic 45.0%
! GCGTTGTTATTCTGAGCATG+AGG + chr7.4:12733920-12733939 None:intergenic 45.0%
! TCTTACGAGGTTGATCCAGT+TGG - chr7.4:12732927-12732946 MS.gene97007:CDS 45.0%
!! CAACTTTTCTTTGGCTGGCT+TGG - chr7.4:12732588-12732607 MS.gene97007:CDS 45.0%
!! GTGAATGGTGTTGCTTTCTG+TGG - chr7.4:12732552-12732571 MS.gene97007:CDS 45.0%
!!! TTTTGGCTTGGGTTCGGTAT+TGG - chr7.4:12732738-12732757 MS.gene97007:CDS 45.0%
ACAGCAGCTGATACATTGGG+AGG + chr7.4:12732534-12732553 None:intergenic 50.0%
ACATTGGGAGGCAATGTACC+GGG + chr7.4:12732522-12732541 None:intergenic 50.0%
CCCAAGCAGACTACATTTGG+AGG - chr7.4:12732961-12732980 MS.gene97007:CDS 50.0%
CCGATGCGGATGATATTCCA+TGG + chr7.4:12733652-12733671 None:intergenic 50.0%
CGAACCACAGAAAGAGGAGA+AGG - chr7.4:12733136-12733155 MS.gene97007:CDS 50.0%
GCAGTACAGTACCAGGCTAT+TGG - chr7.4:12733387-12733406 MS.gene97007:CDS 50.0%
GCCAAAACCGGAAGAAGCAA+AGG + chr7.4:12732725-12732744 None:intergenic 50.0%
GCGGTATAACGAGCAGTTTC+TGG + chr7.4:12733047-12733066 None:intergenic 50.0%
GCTCTATGCAGTACAGTACC+AGG - chr7.4:12733380-12733399 MS.gene97007:CDS 50.0%
GGAAAGCTTGGGGCTATAGT+TGG - chr7.4:12733671-12733690 MS.gene97007:CDS 50.0%
GGCAAAGACTGCTGCAATGA+AGG + chr7.4:12732826-12732845 None:intergenic 50.0%
GGCAAGAGCAAACATGAAGG+CGG + chr7.4:12733480-12733499 None:intergenic 50.0%
GGTGCTAAATGCGCTTGATG+TGG - chr7.4:12732356-12732375 MS.gene97007:CDS 50.0%
GTCTTTGCCATGCAGGGTTT+CGG - chr7.4:12732837-12732856 MS.gene97007:CDS 50.0%
GTGCACTTTCTTAGTACCCG+AGG - chr7.4:12733820-12733839 MS.gene97007:CDS 50.0%
TACCGAACCCAAGCCAAAAC+CGG + chr7.4:12732737-12732756 None:intergenic 50.0%
TGAAGCCGAACCACAGAAAG+AGG - chr7.4:12733130-12733149 MS.gene97007:CDS 50.0%
TGGGGAACAGTTGAACCAAC+TGG + chr7.4:12732945-12732964 None:intergenic 50.0%
! CCCTTTGCTTCTTCCGGTTT+TGG - chr7.4:12732721-12732740 MS.gene97007:CDS 50.0%
! GCATTCATGGTTTGTGCAGG+AGG + chr7.4:12733317-12733336 None:intergenic 50.0%
! GGGCTATAGTTGGTGCATTC+GGG - chr7.4:12733681-12733700 MS.gene97007:CDS 50.0%
! GGGGCTATAGTTGGTGCATT+CGG - chr7.4:12733680-12733699 MS.gene97007:CDS 50.0%
! TGGTGGTGACTACCCTCTTT+CGG - chr7.4:12732758-12732777 MS.gene97007:CDS 50.0%
!! ACCAGGCTATTGGTTTACCG+TGG - chr7.4:12733397-12733416 MS.gene97007:CDS 50.0%
!! GGCTGGCTTGGTGATAAGAT+GGG - chr7.4:12732600-12732619 MS.gene97007:CDS 50.0%
!! GGTTTCGGAATTTTGGGAGC+TGG - chr7.4:12732852-12732871 MS.gene97007:CDS 50.0%
!! TGGCTGGCTTGGTGATAAGA+TGG - chr7.4:12732599-12732618 MS.gene97007:CDS 50.0%
!!! GCTTCTTCCGGTTTTGGCTT+GGG - chr7.4:12732727-12732746 MS.gene97007:CDS 50.0%
!!! TGCTTCTTCCGGTTTTGGCT+TGG - chr7.4:12732726-12732745 MS.gene97007:CDS 50.0%
!!! TTCCGGTTTTGGCTTGGGTT+CGG - chr7.4:12732732-12732751 MS.gene97007:CDS 50.0%
ATCCGCATCGGGAAAGCTTG+GGG - chr7.4:12733661-12733680 MS.gene97007:CDS 55.0%
CATCCGCATCGGGAAAGCTT+GGG - chr7.4:12733660-12733679 MS.gene97007:CDS 55.0%
GCAGCAGTCTTTGCCATGCA+GGG - chr7.4:12732831-12732850 MS.gene97007:CDS 55.0%
GCCACGGTAAACCAATAGCC+TGG + chr7.4:12733401-12733420 None:intergenic 55.0%
GCTTTGCTGCACCATCAACG+TGG + chr7.4:12732500-12732519 None:intergenic 55.0%
TCATCCGCATCGGGAAAGCT+TGG - chr7.4:12733659-12733678 MS.gene97007:CDS 55.0%
TGCAGCAGTCTTTGCCATGC+AGG - chr7.4:12732830-12732849 MS.gene97007:CDS 55.0%
! TGGCTTGGGTTCGGTATTGG+TGG - chr7.4:12732741-12732760 MS.gene97007:CDS 55.0%
!! GGCTTGGTGATAAGATGGGC+AGG - chr7.4:12732604-12732623 MS.gene97007:CDS 55.0%
!! GTTGATGGTGCAGCAAAGCC+CGG - chr7.4:12732501-12732520 MS.gene97007:CDS 55.0%
AGCCCCAAGCTTTCCCGATG+CGG + chr7.4:12733666-12733685 None:intergenic 60.0%
! GCAGGGTACCCTGCAGGTAT+TGG - chr7.4:12733746-12733765 MS.gene97007:CDS 60.0%
! GCAGATGCAGGGTACCCTGC+AGG - chr7.4:12733740-12733759 MS.gene97007:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 12732336 12733949 12732336 ID=MS.gene97007
chr7.4 mRNA 12732336 12733949 12732336 ID=MS.gene97007.t1;Parent=MS.gene97007
chr7.4 exon 12732336 12733949 12732336 ID=MS.gene97007.t1.exon1;Parent=MS.gene97007.t1
chr7.4 CDS 12732336 12733949 12732336 ID=cds.MS.gene97007.t1;Parent=MS.gene97007.t1
Gene Sequence

>MS.gene97007

ATGGCCAAGGATCAAATTGAGGTGCTAAATGCGCTTGATGTGGCTAAAACACAATGGTACCATTTCACTGCAATCATCATAGCTGGTATGGGATTCTTTACAGATGCATATGATCTGTTCTGTGTATCCCTTGTTACCAAGTTGCTTGGTCGCATATACTACCACGTTGATGGTGCAGCAAAGCCCGGTACATTGCCTCCCAATGTATCAGCTGCTGTGAATGGTGTTGCTTTCTGTGGAACACTTTCAGGACAACTTTTCTTTGGCTGGCTTGGTGATAAGATGGGCAGGAAAAAAGTCTATGGTATGACCCTCATGATGATGGTTATCTGTTCAATTGGTTCTGGTCTTTCTTTCGGACACACTCCAAAATCTGTCATGACAACCCTTTGCTTCTTCCGGTTTTGGCTTGGGTTCGGTATTGGTGGTGACTACCCTCTTTCGGCTACCATAATGTCGGAGTATTCTAATAAAAAGACTCGTGGGGCCTTCATTGCAGCAGTCTTTGCCATGCAGGGTTTCGGAATTTTGGGAGCTGGTATATTTGCAATCATAATTTCATCTGCATTCAAGGCCAGGTTTGATTCTCCGTCTTACGAGGTTGATCCAGTTGGTTCAACTGTTCCCCAAGCAGACTACATTTGGAGGATAATTGTGATGGTAGGAGCACTCCCAGCTGCAATGACTTACTACTCGCGGACAAAGATGCCAGAAACTGCTCGTTATACCGCTTTAGTTGCTAAGAACACAGCGCAAGCTGCAGCAGATATGTCTAAGGTTTTGCAGGTTGAGATTGAAGCCGAACCACAGAAAGAGGAGAAGGAAAAGGCTAAATCATATGGCTTGTTCTCAAAAGAGTTCATGAGTCGTCATGGACTACATTTGCTTGGTACAACAAGCACTTGGTTCTTGCTTGACATAGCATTTTATAGCCAAAATCTCTTCCAGAAGGATATTTTCAGTGCAATTGGTTGGATCCCTCCTGCACAAACCATGAATGCACTTGAGGAGGTTTACAAAATTGCGCGAGCTCAAACACTTATTGCTCTATGCAGTACAGTACCAGGCTATTGGTTTACCGTGGCTTTCATAGACAGAATAGGAAGATTTACCATCCAATTGATGGGATTCTTCTTTATGACCGCCTTCATGTTTGCTCTTGCCGTTCCTTATGAACACTGGACTCATAAGGATAACCGAATAGGATTTGTGGTGATGTATTCCTTGACCTTCTTCTTTGCAAATTTTGGGCCTAATGCTACAACATTTGTTGTGCCAGCAGAGATTTTTCCAGCTAGATTTCGATCAACTTGCCATGGAATATCATCCGCATCGGGAAAGCTTGGGGCTATAGTTGGTGCATTCGGGTTCTTGTATTTGGCACAAAACAAGGACAAGAGTAAAGCAGATGCAGGGTACCCTGCAGGTATTGGTATGAAGAATTCATTGATTTTGTTGGGATGTTGTAACATTTTGGGGTTCTTGTGCACTTTCTTAGTACCCGAGGCAAATGGAAAATCTTTAGAGGAAATGTCAGGTGAGAATGATGAGGAAGTTGGAAGCAGAGAAGATGTAGAGAAACCTCATGCTCAGAATAACAACGCTGTTCCATAG

Protein sequence

>MS.gene97007.t1

MAKDQIEVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCVSLVTKLLGRIYYHVDGAAKPGTLPPNVSAAVNGVAFCGTLSGQLFFGWLGDKMGRKKVYGMTLMMMVICSIGSGLSFGHTPKSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILGAGIFAIIISSAFKARFDSPSYEVDPVGSTVPQADYIWRIIVMVGALPAAMTYYSRTKMPETARYTALVAKNTAQAAADMSKVLQVEIEAEPQKEEKEKAKSYGLFSKEFMSRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAQTMNALEEVYKIARAQTLIALCSTVPGYWFTVAFIDRIGRFTIQLMGFFFMTAFMFALAVPYEHWTHKDNRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISSASGKLGAIVGAFGFLYLAQNKDKSKADAGYPAGIGMKNSLILLGCCNILGFLCTFLVPEANGKSLEEMSGENDEEVGSREDVEKPHAQNNNAVP