Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97007.t1 | XP_013449892.1 | 95 | 536 | 27 | 0 | 1 | 536 | 1 | 536 | 5.20E-294 | 1019.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97007.t1 | Q96303 | 81.8 | 527 | 93 | 1 | 1 | 524 | 1 | 527 | 4.9e-256 | 884.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97007.t1 | A0A072UDN5 | 95.0 | 536 | 27 | 0 | 1 | 536 | 1 | 536 | 3.8e-294 | 1019.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene059428 | MS.gene97007 | PPI |
MS.gene006892 | MS.gene97007 | PPI |
MS.gene56432 | MS.gene97007 | PPI |
MS.gene067567 | MS.gene97007 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97007.t1 | MTR_7g096870 | 97.388 | 536 | 14 | 0 | 1 | 536 | 1 | 536 | 0.0 | 1083 |
MS.gene97007.t1 | MTR_7g096880 | 90.449 | 534 | 49 | 1 | 1 | 534 | 1 | 532 | 0.0 | 961 |
MS.gene97007.t1 | MTR_1g069935 | 85.164 | 519 | 77 | 0 | 1 | 519 | 1 | 519 | 0.0 | 941 |
MS.gene97007.t1 | MTR_3g082700 | 75.556 | 540 | 129 | 1 | 1 | 537 | 1 | 540 | 0.0 | 837 |
MS.gene97007.t1 | MTR_1g069930 | 75.146 | 515 | 127 | 1 | 1 | 514 | 1 | 515 | 0.0 | 835 |
MS.gene97007.t1 | MTR_1g074930 | 76.641 | 518 | 117 | 2 | 5 | 518 | 4 | 521 | 0.0 | 832 |
MS.gene97007.t1 | MTR_1g043220 | 75.188 | 532 | 128 | 2 | 5 | 532 | 4 | 535 | 0.0 | 822 |
MS.gene97007.t1 | MTR_1g043200 | 76.091 | 527 | 120 | 3 | 5 | 527 | 4 | 528 | 0.0 | 816 |
MS.gene97007.t1 | MTR_1g074940 | 76.459 | 514 | 101 | 4 | 1 | 508 | 1 | 500 | 0.0 | 812 |
MS.gene97007.t1 | MTR_1g043290 | 75.285 | 526 | 126 | 2 | 5 | 526 | 4 | 529 | 0.0 | 812 |
MS.gene97007.t1 | MTR_1g028600 | 60.075 | 531 | 189 | 4 | 6 | 524 | 3 | 522 | 0.0 | 635 |
MS.gene97007.t1 | MTR_5g068140 | 57.537 | 544 | 203 | 4 | 8 | 532 | 7 | 541 | 0.0 | 619 |
MS.gene97007.t1 | MTR_4g083960 | 51.866 | 536 | 227 | 12 | 6 | 534 | 5 | 516 | 1.30e-180 | 518 |
MS.gene97007.t1 | MTR_7g005910 | 23.491 | 464 | 274 | 17 | 87 | 532 | 92 | 492 | 7.41e-14 | 74.3 |
MS.gene97007.t1 | MTR_3g084110 | 21.573 | 445 | 293 | 14 | 76 | 512 | 76 | 472 | 2.25e-13 | 72.8 |
MS.gene97007.t1 | MTR_7g446340 | 23.555 | 467 | 292 | 17 | 76 | 527 | 104 | 520 | 2.63e-12 | 69.7 |
MS.gene97007.t1 | MTR_6g007340 | 23.555 | 467 | 292 | 17 | 76 | 527 | 104 | 520 | 2.63e-12 | 69.7 |
MS.gene97007.t1 | MTR_6g088450 | 25.564 | 399 | 245 | 12 | 81 | 463 | 108 | 470 | 5.62e-12 | 68.6 |
MS.gene97007.t1 | MTR_1g116660 | 21.429 | 434 | 277 | 14 | 90 | 511 | 97 | 478 | 5.64e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97007.t1 | AT2G38940 | 84.884 | 516 | 75 | 1 | 1 | 513 | 1 | 516 | 0.0 | 927 |
MS.gene97007.t1 | AT3G54700 | 84.363 | 518 | 80 | 1 | 1 | 518 | 1 | 517 | 0.0 | 926 |
MS.gene97007.t1 | AT3G54700 | 84.363 | 518 | 80 | 1 | 1 | 518 | 1 | 517 | 0.0 | 926 |
MS.gene97007.t1 | AT2G32830 | 73.937 | 541 | 137 | 1 | 1 | 537 | 1 | 541 | 0.0 | 852 |
MS.gene97007.t1 | AT5G43360 | 78.077 | 520 | 112 | 1 | 1 | 518 | 1 | 520 | 0.0 | 839 |
MS.gene97007.t1 | AT5G43350 | 77.992 | 518 | 112 | 1 | 1 | 516 | 1 | 518 | 0.0 | 837 |
MS.gene97007.t1 | AT5G43370 | 77.799 | 518 | 113 | 1 | 1 | 516 | 1 | 518 | 0.0 | 809 |
MS.gene97007.t1 | AT5G43370 | 77.799 | 518 | 113 | 1 | 1 | 516 | 1 | 518 | 0.0 | 809 |
MS.gene97007.t1 | AT5G43340 | 66.988 | 518 | 156 | 2 | 3 | 518 | 4 | 508 | 0.0 | 736 |
MS.gene97007.t1 | AT1G20860 | 48.785 | 535 | 256 | 9 | 6 | 533 | 3 | 526 | 1.58e-173 | 501 |
MS.gene97007.t1 | AT1G76430 | 47.672 | 537 | 252 | 11 | 5 | 528 | 3 | 523 | 2.61e-173 | 500 |
MS.gene97007.t1 | AT1G20860 | 48.785 | 535 | 256 | 9 | 6 | 533 | 55 | 578 | 8.72e-173 | 501 |
MS.gene97007.t1 | AT4G08878 | 68.487 | 238 | 75 | 0 | 31 | 268 | 13 | 250 | 3.36e-115 | 342 |
MS.gene97007.t1 | AT4G08895 | 56.643 | 143 | 30 | 1 | 318 | 460 | 23 | 133 | 3.81e-47 | 162 |
MS.gene97007.t1 | AT2G43330 | 22.973 | 444 | 259 | 17 | 90 | 511 | 93 | 475 | 1.35e-11 | 67.4 |
Find 139 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCTTCTTCTTTGCAAATTT+TGG | -0.031518 | 7.4:-12732700 | MS.gene97007:CDS |
CCCTTTGCTTCTTCCGGTTT+TGG | 0.142326 | 7.4:-12733542 | MS.gene97007:CDS |
TATCCTTCTGGAAGAGATTT+TGG | 0.150755 | 7.4:+12732995 | None:intergenic |
GCTTTCTGTGGAACACTTTC+AGG | 0.150980 | 7.4:-12733699 | MS.gene97007:CDS |
CATGCAGGGTTTCGGAATTT+TGG | 0.151969 | 7.4:-12733418 | MS.gene97007:CDS |
GTTGGGATGTTGTAACATTT+TGG | 0.179506 | 7.4:-12732473 | MS.gene97007:CDS |
TGCATTCGGGTTCTTGTATT+TGG | 0.192044 | 7.4:-12732569 | MS.gene97007:CDS |
GCGGTATAACGAGCAGTTTC+TGG | 0.246126 | 7.4:+12733219 | None:intergenic |
GTTATCTGTTCAATTGGTTC+TGG | 0.268162 | 7.4:-12733603 | MS.gene97007:CDS |
AGGGTTGTCATGACAGATTT+TGG | 0.291172 | 7.4:+12733561 | None:intergenic |
GGGGCTATAGTTGGTGCATT+CGG | 0.293505 | 7.4:-12732583 | MS.gene97007:CDS |
ATTGGTTCTGGTCTTTCTTT+CGG | 0.310334 | 7.4:-12733591 | MS.gene97007:CDS |
AACCTCCTCAAGTGCATTCA+TGG | 0.318200 | 7.4:+12732936 | None:intergenic |
TGACAACCCTTTGCTTCTTC+CGG | 0.331448 | 7.4:-12733548 | MS.gene97007:CDS |
ATTAGAATACTCCGACATTA+TGG | 0.331666 | 7.4:+12733479 | None:intergenic |
CTTCTCCTCTTTCTGTGGTT+CGG | 0.335668 | 7.4:+12733128 | None:intergenic |
CATAATTTCATCTGCATTCA+AGG | 0.338184 | 7.4:-12733376 | MS.gene97007:CDS |
GTCTTTGCCATGCAGGGTTT+CGG | 0.339550 | 7.4:-12733426 | MS.gene97007:CDS |
GGGCTATAGTTGGTGCATTC+GGG | 0.341772 | 7.4:-12732582 | MS.gene97007:CDS |
TTGCACTGAAAATATCCTTC+TGG | 0.362845 | 7.4:+12732983 | None:intergenic |
TTCCCCAAGCAGACTACATT+TGG | 0.372520 | 7.4:-12733305 | MS.gene97007:CDS |
CCTCCAAATGTAGTCTGCTT+GGG | 0.372673 | 7.4:+12733302 | None:intergenic |
GCAGTACAGTACCAGGCTAT+TGG | 0.376413 | 7.4:-12732876 | MS.gene97007:CDS |
AAGATTTACCATCCAATTGA+TGG | 0.386978 | 7.4:-12732824 | MS.gene97007:CDS |
TGGTGGTGACTACCCTCTTT+CGG | 0.394304 | 7.4:-12733505 | MS.gene97007:CDS |
TGCAGCAGTCTTTGCCATGC+AGG | 0.397867 | 7.4:-12733433 | MS.gene97007:CDS |
ACAACAAATGTTGTAGCATT+AGG | 0.400761 | 7.4:+12732676 | None:intergenic |
TAAAGAAGAATCCCATCAAT+TGG | 0.402453 | 7.4:+12732812 | None:intergenic |
CATCCGCATCGGGAAAGCTT+GGG | 0.403184 | 7.4:-12732603 | MS.gene97007:CDS |
TAGCACCTCAATTTGATCCT+TGG | 0.413690 | 7.4:+12733923 | None:intergenic |
TCCTCCAAATGTAGTCTGCT+TGG | 0.420387 | 7.4:+12733301 | None:intergenic |
TACCGAACCCAAGCCAAAAC+CGG | 0.427494 | 7.4:+12733529 | None:intergenic |
TGGCTGGCTTGGTGATAAGA+TGG | 0.431799 | 7.4:-12733664 | MS.gene97007:CDS |
GGTGAGAATGATGAGGAAGT+TGG | 0.432793 | 7.4:-12732391 | MS.gene97007:CDS |
GGCAAATGGAAAATCTTTAG+AGG | 0.436138 | 7.4:-12732422 | MS.gene97007:CDS |
CGCATATACTACCACGTTGA+TGG | 0.442218 | 7.4:-12733777 | MS.gene97007:CDS |
GCAGGGTACCCTGCAGGTAT+TGG | 0.442599 | 7.4:-12732517 | MS.gene97007:CDS |
TCCCTTGTTACCAAGTTGCT+TGG | 0.445710 | 7.4:-12733801 | MS.gene97007:CDS |
ATGATGGTTATCTGTTCAAT+TGG | 0.447387 | 7.4:-12733609 | MS.gene97007:CDS |
GGCAAAGACTGCTGCAATGA+AGG | 0.448745 | 7.4:+12733440 | None:intergenic |
TGCAATCATCATAGCTGGTA+TGG | 0.448896 | 7.4:-12733859 | MS.gene97007:CDS |
AGCTGCAGCAGATATGTCTA+AGG | 0.462417 | 7.4:-12733172 | MS.gene97007:CDS |
TTATGAGTCCAGTGTTCATA+AGG | 0.464297 | 7.4:+12732760 | None:intergenic |
GGCTGGCTTGGTGATAAGAT+GGG | 0.464364 | 7.4:-12733663 | MS.gene97007:CDS |
TCATCCGCATCGGGAAAGCT+TGG | 0.465982 | 7.4:-12732604 | MS.gene97007:CDS |
GACAAGAGTAAAGCAGATGC+AGG | 0.466575 | 7.4:-12732535 | MS.gene97007:CDS |
AAGGAAAAGGCTAAATCATA+TGG | 0.468204 | 7.4:-12733108 | MS.gene97007:CDS |
GAGTAGTAAGTCATTGCAGC+TGG | 0.469391 | 7.4:+12733255 | None:intergenic |
TGGGGAACAGTTGAACCAAC+TGG | 0.470918 | 7.4:+12733321 | None:intergenic |
ACATCACCACAAATCCTATT+CGG | 0.472436 | 7.4:+12732731 | None:intergenic |
ATTCACAGCAGCTGATACAT+TGG | 0.472564 | 7.4:+12733728 | None:intergenic |
TTCTTAGTACCCGAGGCAAA+TGG | 0.472965 | 7.4:-12732436 | MS.gene97007:CDS |
GTGAATGGTGTTGCTTTCTG+TGG | 0.474993 | 7.4:-12733711 | MS.gene97007:CDS |
ACTCATAAGGATAACCGAAT+AGG | 0.475963 | 7.4:-12732745 | MS.gene97007:CDS |
TGAAGCCGAACCACAGAAAG+AGG | 0.480495 | 7.4:-12733133 | MS.gene97007:CDS |
GACATTATGGTAGCCGAAAG+AGG | 0.481182 | 7.4:+12733492 | None:intergenic |
TTTCATCTGCATTCAAGGCC+AGG | 0.481632 | 7.4:-12733371 | MS.gene97007:CDS |
TGGCTTGGGTTCGGTATTGG+TGG | 0.492801 | 7.4:-12733522 | MS.gene97007:CDS |
CTTGTATTTGGCACAAAACA+AGG | 0.497426 | 7.4:-12732557 | MS.gene97007:CDS |
TTATGAACACTGGACTCATA+AGG | 0.499390 | 7.4:-12732758 | MS.gene97007:CDS |
CCCAAAATTTGCAAAGAAGA+AGG | 0.507277 | 7.4:+12732699 | None:intergenic |
TACATTGGGAGGCAATGTAC+CGG | 0.509415 | 7.4:+12733743 | None:intergenic |
CCCAAGCAGACTACATTTGG+AGG | 0.513096 | 7.4:-12733302 | MS.gene97007:CDS |
AGTGCATTCATGGTTTGTGC+AGG | 0.513709 | 7.4:+12732946 | None:intergenic |
GGAAAGCTTGGGGCTATAGT+TGG | 0.514607 | 7.4:-12732592 | MS.gene97007:CDS |
GCAGCAGTCTTTGCCATGCA+GGG | 0.514618 | 7.4:-12733432 | MS.gene97007:CDS |
AGATTTACCATCCAATTGAT+GGG | 0.514693 | 7.4:-12732823 | MS.gene97007:CDS |
CAAGTTGATCGAAATCTAGC+TGG | 0.515101 | 7.4:+12732637 | None:intergenic |
TTCACTGCAATCATCATAGC+TGG | 0.515551 | 7.4:-12733864 | MS.gene97007:CDS |
ACAGAAAGAGGAGAAGGAAA+AGG | 0.518948 | 7.4:-12733121 | MS.gene97007:CDS |
GGATAACCGAATAGGATTTG+TGG | 0.523531 | 7.4:-12732737 | MS.gene97007:CDS |
CATGGAATATCATCCGCATC+GGG | 0.524513 | 7.4:-12732613 | MS.gene97007:CDS |
GGCTTGGTGATAAGATGGGC+AGG | 0.528400 | 7.4:-12733659 | MS.gene97007:CDS |
GCCAAAACCGGAAGAAGCAA+AGG | 0.528845 | 7.4:+12733541 | None:intergenic |
CTATGATGATTGCAGTGAAA+TGG | 0.528943 | 7.4:+12733868 | None:intergenic |
GCATTCATGGTTTGTGCAGG+AGG | 0.529180 | 7.4:+12732949 | None:intergenic |
TTCTTCATACCAATACCTGC+AGG | 0.529263 | 7.4:+12732508 | None:intergenic |
CGAACCACAGAAAGAGGAGA+AGG | 0.530308 | 7.4:-12733127 | MS.gene97007:CDS |
TTCACAGCAGCTGATACATT+GGG | 0.530334 | 7.4:+12733729 | None:intergenic |
CGTCATGGACTACATTTGCT+TGG | 0.532151 | 7.4:-12733060 | MS.gene97007:CDS |
GTGGCTTTCATAGACAGAAT+AGG | 0.532759 | 7.4:-12732847 | MS.gene97007:CDS |
AGATTTCGATCAACTTGCCA+TGG | 0.539975 | 7.4:-12732631 | MS.gene97007:CDS |
AATGTATCAGCTGCTGTGAA+TGG | 0.543645 | 7.4:-12733726 | MS.gene97007:CDS |
GCAGATGCAGGGTACCCTGC+AGG | 0.546146 | 7.4:-12732523 | MS.gene97007:CDS |
GTTGATGGTGCAGCAAAGCC+CGG | 0.548274 | 7.4:-12733762 | MS.gene97007:CDS |
GGCTTGAATAGTCATGGCCA+AGG | 0.551613 | 7.4:-12733940 | None:intergenic |
AAATCTTTAGAGGAAATGTC+AGG | 0.557207 | 7.4:-12732412 | MS.gene97007:CDS |
CCATGGAATATCATCCGCAT+CGG | 0.559707 | 7.4:-12732614 | MS.gene97007:CDS |
TCTTACGAGGTTGATCCAGT+TGG | 0.560435 | 7.4:-12733336 | MS.gene97007:CDS |
TGGAGGATAATTGTGATGGT+AGG | 0.563401 | 7.4:-12733285 | MS.gene97007:CDS |
TGCTTGGTACAACAAGCACT+TGG | 0.567808 | 7.4:-12733044 | MS.gene97007:CDS |
GCAATCATCATAGCTGGTAT+GGG | 0.570874 | 7.4:-12733858 | MS.gene97007:CDS |
GAAGAATCCCATCAATTGGA+TGG | 0.573451 | 7.4:+12732816 | None:intergenic |
TTGCCGTTCCTTATGAACAC+TGG | 0.573936 | 7.4:-12732768 | MS.gene97007:CDS |
ACATTGGGAGGCAATGTACC+GGG | 0.578245 | 7.4:+12733744 | None:intergenic |
CATTCATGGTTTGTGCAGGA+GGG | 0.580236 | 7.4:+12732950 | None:intergenic |
TAGCCAAAATCTCTTCCAGA+AGG | 0.581352 | 7.4:-12732998 | MS.gene97007:CDS |
GCCACGGTAAACCAATAGCC+TGG | 0.581737 | 7.4:+12732865 | None:intergenic |
GCTCTATGCAGTACAGTACC+AGG | 0.583363 | 7.4:-12732883 | MS.gene97007:CDS |
AAAGAGTTCATGAGTCGTCA+TGG | 0.583437 | 7.4:-12733075 | MS.gene97007:CDS |
TGGTATGACCCTCATGATGA+TGG | 0.586953 | 7.4:-12733625 | MS.gene97007:CDS |
AACCATGAATGCACTTGAGG+AGG | 0.589777 | 7.4:-12732938 | MS.gene97007:CDS |
CCGATGCGGATGATATTCCA+TGG | 0.591183 | 7.4:+12732614 | None:intergenic |
CATGGCCAAGGATCAAATTG+AGG | 0.592004 | 7.4:-12733928 | MS.gene97007:CDS |
CCAAAACCGGAAGAAGCAAA+GGG | 0.592671 | 7.4:+12733542 | None:intergenic |
AGCCCCAAGCTTTCCCGATG+CGG | 0.596062 | 7.4:+12732600 | None:intergenic |
CTCCAAATGTAGTCTGCTTG+GGG | 0.596396 | 7.4:+12733303 | None:intergenic |
ATCCGCATCGGGAAAGCTTG+GGG | 0.597584 | 7.4:-12732602 | MS.gene97007:CDS |
GACCAAGCAACTTGGTAACA+AGG | 0.600091 | 7.4:+12733799 | None:intergenic |
AATGTCAGGTGAGAATGATG+AGG | 0.605492 | 7.4:-12732398 | MS.gene97007:CDS |
GTATATGCGACCAAGCAACT+TGG | 0.611196 | 7.4:+12733791 | None:intergenic |
CATTTGGAGGATAATTGTGA+TGG | 0.611828 | 7.4:-12733289 | MS.gene97007:CDS |
GCGTTGTTATTCTGAGCATG+AGG | 0.612504 | 7.4:+12732346 | None:intergenic |
GTTTGATTCTCCGTCTTACG+AGG | 0.613183 | 7.4:-12733349 | MS.gene97007:CDS |
ACTGGATCAACCTCGTAAGA+CGG | 0.613448 | 7.4:+12733339 | None:intergenic |
ACAAACCATGAATGCACTTG+AGG | 0.613620 | 7.4:-12732941 | MS.gene97007:CDS |
AGTAGTAAGTCATTGCAGCT+GGG | 0.615517 | 7.4:+12733256 | None:intergenic |
AGTCCAGTGTTCATAAGGAA+CGG | 0.616856 | 7.4:+12732765 | None:intergenic |
AACAGATAACCATCATCATG+AGG | 0.618082 | 7.4:+12733616 | None:intergenic |
AACGGCAAGAGCAAACATGA+AGG | 0.619751 | 7.4:+12732783 | None:intergenic |
ACATTATGGTAGCCGAAAGA+GGG | 0.623125 | 7.4:+12733493 | None:intergenic |
ACCAGGCTATTGGTTTACCG+TGG | 0.630346 | 7.4:-12732866 | MS.gene97007:CDS |
TATTCTGTCTATGAAAGCCA+CGG | 0.630634 | 7.4:+12732849 | None:intergenic |
GGTGCTAAATGCGCTTGATG+TGG | 0.631666 | 7.4:-12733907 | MS.gene97007:CDS |
ATTTGCAAAGAAGAAGGTCA+AGG | 0.633508 | 7.4:+12732705 | None:intergenic |
GTGCACTTTCTTAGTACCCG+AGG | 0.637975 | 7.4:-12732443 | MS.gene97007:CDS |
CAAAATTCCGAAACCCTGCA+TGG | 0.639934 | 7.4:+12733419 | None:intergenic |
ACCAAGCAACTTGGTAACAA+GGG | 0.642899 | 7.4:+12733800 | None:intergenic |
ACAGCAGCTGATACATTGGG+AGG | 0.653095 | 7.4:+12733732 | None:intergenic |
ACAAGAGTAAAGCAGATGCA+GGG | 0.657371 | 7.4:-12732534 | MS.gene97007:CDS |
TCTTTCGGCTACCATAATGT+CGG | 0.663564 | 7.4:-12733490 | MS.gene97007:CDS |
GTAAGACGGAGAATCAAACC+TGG | 0.669834 | 7.4:+12733353 | None:intergenic |
CTGCAATGACTTACTACTCG+CGG | 0.671835 | 7.4:-12733251 | MS.gene97007:CDS |
ACAGATAACCATCATCATGA+GGG | 0.673555 | 7.4:+12733617 | None:intergenic |
GGCAAGAGCAAACATGAAGG+CGG | 0.686722 | 7.4:+12732786 | None:intergenic |
TCTTCATACCAATACCTGCA+GGG | 0.687460 | 7.4:+12732509 | None:intergenic |
TGTGTTCTTAGCAACTAAAG+CGG | 0.693409 | 7.4:+12733200 | None:intergenic |
TTGATGTGGCTAAAACACAA+TGG | 0.704796 | 7.4:-12733893 | MS.gene97007:CDS |
GCTTTGCTGCACCATCAACG+TGG | 0.731004 | 7.4:+12733766 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGAATTCATTGATTTTGTT+GGG | - | chr7.4:12733773-12733792 | MS.gene97007:CDS | 20.0% |
! | ATTCTAATAAAAAGACTCGT+GGG | - | chr7.4:12732799-12732818 | MS.gene97007:CDS | 25.0% |
! | TATTCTAATAAAAAGACTCG+TGG | - | chr7.4:12732798-12732817 | MS.gene97007:CDS | 25.0% |
!!! | GAAGAATTCATTGATTTTGT+TGG | - | chr7.4:12733772-12733791 | MS.gene97007:CDS | 25.0% |
AAGATTTACCATCCAATTGA+TGG | - | chr7.4:12733439-12733458 | MS.gene97007:CDS | 30.0% | |
AAGGAAAAGGCTAAATCATA+TGG | - | chr7.4:12733155-12733174 | MS.gene97007:CDS | 30.0% | |
ACAACAAATGTTGTAGCATT+AGG | + | chr7.4:12733590-12733609 | None:intergenic | 30.0% | |
AGATTTACCATCCAATTGAT+GGG | - | chr7.4:12733440-12733459 | MS.gene97007:CDS | 30.0% | |
ATGATGGTTATCTGTTCAAT+TGG | - | chr7.4:12732654-12732673 | MS.gene97007:CDS | 30.0% | |
ATTAGAATACTCCGACATTA+TGG | + | chr7.4:12732787-12732806 | None:intergenic | 30.0% | |
CATAATTTCATCTGCATTCA+AGG | - | chr7.4:12732887-12732906 | MS.gene97007:CDS | 30.0% | |
TAAAGAAGAATCCCATCAAT+TGG | + | chr7.4:12733454-12733473 | None:intergenic | 30.0% | |
TTCTAATAAAAAGACTCGTG+GGG | - | chr7.4:12732800-12732819 | MS.gene97007:CDS | 30.0% | |
! | AAATCTTTAGAGGAAATGTC+AGG | - | chr7.4:12733851-12733870 | MS.gene97007:CDS | 30.0% |
! | AAGGATATTTTCAGTGCAAT+TGG | - | chr7.4:12733284-12733303 | MS.gene97007:CDS | 30.0% |
! | ACCTTCTTCTTTGCAAATTT+TGG | - | chr7.4:12733563-12733582 | MS.gene97007:CDS | 30.0% |
! | ATATTTTCAGTGCAATTGGT+TGG | - | chr7.4:12733288-12733307 | MS.gene97007:CDS | 30.0% |
! | CCTTCTTCTTTGCAAATTTT+GGG | - | chr7.4:12733564-12733583 | MS.gene97007:CDS | 30.0% |
! | TAAAGATTTTCCATTTGCCT+CGG | + | chr7.4:12733840-12733859 | None:intergenic | 30.0% |
! | TTGGGATGTTGTAACATTTT+GGG | - | chr7.4:12733791-12733810 | MS.gene97007:CDS | 30.0% |
AACAGATAACCATCATCATG+AGG | + | chr7.4:12732650-12732669 | None:intergenic | 35.0% | |
ACAGATAACCATCATCATGA+GGG | + | chr7.4:12732649-12732668 | None:intergenic | 35.0% | |
ACATCACCACAAATCCTATT+CGG | + | chr7.4:12733535-12733554 | None:intergenic | 35.0% | |
ACTCATAAGGATAACCGAAT+AGG | - | chr7.4:12733518-12733537 | MS.gene97007:CDS | 35.0% | |
ATTTGCAAAGAAGAAGGTCA+AGG | + | chr7.4:12733561-12733580 | None:intergenic | 35.0% | |
CATTTGGAGGATAATTGTGA+TGG | - | chr7.4:12732974-12732993 | MS.gene97007:CDS | 35.0% | |
CCCAAAATTTGCAAAGAAGA+AGG | + | chr7.4:12733567-12733586 | None:intergenic | 35.0% | |
CTATGATGATTGCAGTGAAA+TGG | + | chr7.4:12732398-12732417 | None:intergenic | 35.0% | |
CTTGTATTTGGCACAAAACA+AGG | - | chr7.4:12733706-12733725 | MS.gene97007:CDS | 35.0% | |
GGCAAATGGAAAATCTTTAG+AGG | - | chr7.4:12733841-12733860 | MS.gene97007:CDS | 35.0% | |
TATTCTGTCTATGAAAGCCA+CGG | + | chr7.4:12733417-12733436 | None:intergenic | 35.0% | |
TGTGTTCTTAGCAACTAAAG+CGG | + | chr7.4:12733066-12733085 | None:intergenic | 35.0% | |
TTATGAACACTGGACTCATA+AGG | - | chr7.4:12733505-12733524 | MS.gene97007:CDS | 35.0% | |
TTATGAGTCCAGTGTTCATA+AGG | + | chr7.4:12733506-12733525 | None:intergenic | 35.0% | |
TTGATGTGGCTAAAACACAA+TGG | - | chr7.4:12732370-12732389 | MS.gene97007:CDS | 35.0% | |
TTGCACTGAAAATATCCTTC+TGG | + | chr7.4:12733283-12733302 | None:intergenic | 35.0% | |
! | AAAGATTTTCCATTTGCCTC+GGG | + | chr7.4:12733839-12733858 | None:intergenic | 35.0% |
! | CTTTCAGGACAACTTTTCTT+TGG | - | chr7.4:12732579-12732598 | MS.gene97007:CDS | 35.0% |
! | GTTATCTGTTCAATTGGTTC+TGG | - | chr7.4:12732660-12732679 | MS.gene97007:CDS | 35.0% |
! | GTTGGGATGTTGTAACATTT+TGG | - | chr7.4:12733790-12733809 | MS.gene97007:CDS | 35.0% |
! | TGGGATGTTGTAACATTTTG+GGG | - | chr7.4:12733792-12733811 | MS.gene97007:CDS | 35.0% |
!! | AGATATGTCTAAGGTTTTGC+AGG | - | chr7.4:12733100-12733119 | MS.gene97007:CDS | 35.0% |
!! | ATTGGTTCTGGTCTTTCTTT+CGG | - | chr7.4:12732672-12732691 | MS.gene97007:CDS | 35.0% |
!! | TATCCTTCTGGAAGAGATTT+TGG | + | chr7.4:12733271-12733290 | None:intergenic | 35.0% |
AAAGAGTTCATGAGTCGTCA+TGG | - | chr7.4:12733188-12733207 | MS.gene97007:CDS | 40.0% | |
AATGTATCAGCTGCTGTGAA+TGG | - | chr7.4:12732537-12732556 | MS.gene97007:CDS | 40.0% | |
AATGTCAGGTGAGAATGATG+AGG | - | chr7.4:12733865-12733884 | MS.gene97007:CDS | 40.0% | |
ACAAACCATGAATGCACTTG+AGG | - | chr7.4:12733322-12733341 | MS.gene97007:CDS | 40.0% | |
ACAAGAGTAAAGCAGATGCA+GGG | - | chr7.4:12733729-12733748 | MS.gene97007:CDS | 40.0% | |
ACAGAAAGAGGAGAAGGAAA+AGG | - | chr7.4:12733142-12733161 | MS.gene97007:CDS | 40.0% | |
ACATTATGGTAGCCGAAAGA+GGG | + | chr7.4:12732773-12732792 | None:intergenic | 40.0% | |
AGATTTCGATCAACTTGCCA+TGG | - | chr7.4:12733632-12733651 | MS.gene97007:CDS | 40.0% | |
AGTAGTAAGTCATTGCAGCT+GGG | + | chr7.4:12733010-12733029 | None:intergenic | 40.0% | |
AGTCCAGTGTTCATAAGGAA+CGG | + | chr7.4:12733501-12733520 | None:intergenic | 40.0% | |
ATGGGCAGGAAAAAAGTCTA+TGG | - | chr7.4:12732618-12732637 | MS.gene97007:CDS | 40.0% | |
ATTCACAGCAGCTGATACAT+TGG | + | chr7.4:12732538-12732557 | None:intergenic | 40.0% | |
GAAGAATCCCATCAATTGGA+TGG | + | chr7.4:12733450-12733469 | None:intergenic | 40.0% | |
GCAATCATCATAGCTGGTAT+GGG | - | chr7.4:12732405-12732424 | MS.gene97007:CDS | 40.0% | |
GGATAACCGAATAGGATTTG+TGG | - | chr7.4:12733526-12733545 | MS.gene97007:CDS | 40.0% | |
GTGGCTTTCATAGACAGAAT+AGG | - | chr7.4:12733416-12733435 | MS.gene97007:CDS | 40.0% | |
TAGCACCTCAATTTGATCCT+TGG | + | chr7.4:12732343-12732362 | None:intergenic | 40.0% | |
TAGCCAAAATCTCTTCCAGA+AGG | - | chr7.4:12733265-12733284 | MS.gene97007:CDS | 40.0% | |
TCTTCATACCAATACCTGCA+GGG | + | chr7.4:12733757-12733776 | None:intergenic | 40.0% | |
TCTTTCGGCTACCATAATGT+CGG | - | chr7.4:12732773-12732792 | MS.gene97007:CDS | 40.0% | |
TGCAATCATCATAGCTGGTA+TGG | - | chr7.4:12732404-12732423 | MS.gene97007:CDS | 40.0% | |
TGGAGGATAATTGTGATGGT+AGG | - | chr7.4:12732978-12732997 | MS.gene97007:CDS | 40.0% | |
TTCACAGCAGCTGATACATT+GGG | + | chr7.4:12732537-12732556 | None:intergenic | 40.0% | |
TTCACTGCAATCATCATAGC+TGG | - | chr7.4:12732399-12732418 | MS.gene97007:CDS | 40.0% | |
TTCTTCATACCAATACCTGC+AGG | + | chr7.4:12733758-12733777 | None:intergenic | 40.0% | |
! | ACCAAGCAACTTGGTAACAA+GGG | + | chr7.4:12732466-12732485 | None:intergenic | 40.0% |
! | AGGGTTGTCATGACAGATTT+TGG | + | chr7.4:12732705-12732724 | None:intergenic | 40.0% |
! | ATGCAGGGTTTCGGAATTTT+GGG | - | chr7.4:12732846-12732865 | MS.gene97007:CDS | 40.0% |
! | TGCATTCGGGTTCTTGTATT+TGG | - | chr7.4:12733694-12733713 | MS.gene97007:CDS | 40.0% |
! | TTTTCCTTCTCCTCTTTCTG+TGG | + | chr7.4:12733143-12733162 | None:intergenic | 40.0% |
!! | CAAGTTGATCGAAATCTAGC+TGG | + | chr7.4:12733629-12733648 | None:intergenic | 40.0% |
AACCATGAATGCACTTGAGG+AGG | - | chr7.4:12733325-12733344 | MS.gene97007:CDS | 45.0% | |
AACCTCCTCAAGTGCATTCA+TGG | + | chr7.4:12733330-12733349 | None:intergenic | 45.0% | |
AACGGCAAGAGCAAACATGA+AGG | + | chr7.4:12733483-12733502 | None:intergenic | 45.0% | |
ACTGGATCAACCTCGTAAGA+CGG | + | chr7.4:12732927-12732946 | None:intergenic | 45.0% | |
AGCTGCAGCAGATATGTCTA+AGG | - | chr7.4:12733091-12733110 | MS.gene97007:CDS | 45.0% | |
CAAAATTCCGAAACCCTGCA+TGG | + | chr7.4:12732847-12732866 | None:intergenic | 45.0% | |
CATGGAATATCATCCGCATC+GGG | - | chr7.4:12733650-12733669 | MS.gene97007:CDS | 45.0% | |
CCAAAACCGGAAGAAGCAAA+GGG | + | chr7.4:12732724-12732743 | None:intergenic | 45.0% | |
CCATGGAATATCATCCGCAT+CGG | - | chr7.4:12733649-12733668 | MS.gene97007:CDS | 45.0% | |
CCTCCAAATGTAGTCTGCTT+GGG | + | chr7.4:12732964-12732983 | None:intergenic | 45.0% | |
CGCATATACTACCACGTTGA+TGG | - | chr7.4:12732486-12732505 | MS.gene97007:CDS | 45.0% | |
CTAGCTGGAAAAATCTCTGC+TGG | + | chr7.4:12733614-12733633 | None:intergenic | 45.0% | |
CTCCAAATGTAGTCTGCTTG+GGG | + | chr7.4:12732963-12732982 | None:intergenic | 45.0% | |
CTGCAATGACTTACTACTCG+CGG | - | chr7.4:12733012-12733031 | MS.gene97007:CDS | 45.0% | |
CTTCTCCTCTTTCTGTGGTT+CGG | + | chr7.4:12733138-12733157 | None:intergenic | 45.0% | |
GACAAGAGTAAAGCAGATGC+AGG | - | chr7.4:12733728-12733747 | MS.gene97007:CDS | 45.0% | |
GACATTATGGTAGCCGAAAG+AGG | + | chr7.4:12732774-12732793 | None:intergenic | 45.0% | |
GAGTAGTAAGTCATTGCAGC+TGG | + | chr7.4:12733011-12733030 | None:intergenic | 45.0% | |
GCTTTCTGTGGAACACTTTC+AGG | - | chr7.4:12732564-12732583 | MS.gene97007:CDS | 45.0% | |
GGTGAGAATGATGAGGAAGT+TGG | - | chr7.4:12733872-12733891 | MS.gene97007:CDS | 45.0% | |
GTAAGACGGAGAATCAAACC+TGG | + | chr7.4:12732913-12732932 | None:intergenic | 45.0% | |
GTATATGCGACCAAGCAACT+TGG | + | chr7.4:12732475-12732494 | None:intergenic | 45.0% | |
GTTTGATTCTCCGTCTTACG+AGG | - | chr7.4:12732914-12732933 | MS.gene97007:CDS | 45.0% | |
TACATTGGGAGGCAATGTAC+CGG | + | chr7.4:12732523-12732542 | None:intergenic | 45.0% | |
TCCCTTGTTACCAAGTTGCT+TGG | - | chr7.4:12732462-12732481 | MS.gene97007:CDS | 45.0% | |
TCCTCCAAATGTAGTCTGCT+TGG | + | chr7.4:12732965-12732984 | None:intergenic | 45.0% | |
TGACAACCCTTTGCTTCTTC+CGG | - | chr7.4:12732715-12732734 | MS.gene97007:CDS | 45.0% | |
TGCTTGGTACAACAAGCACT+TGG | - | chr7.4:12733219-12733238 | MS.gene97007:CDS | 45.0% | |
TGGTATGACCCTCATGATGA+TGG | - | chr7.4:12732638-12732657 | MS.gene97007:CDS | 45.0% | |
TTCCCCAAGCAGACTACATT+TGG | - | chr7.4:12732958-12732977 | MS.gene97007:CDS | 45.0% | |
TTCTTAGTACCCGAGGCAAA+TGG | - | chr7.4:12733827-12733846 | MS.gene97007:CDS | 45.0% | |
TTGCCGTTCCTTATGAACAC+TGG | - | chr7.4:12733495-12733514 | MS.gene97007:CDS | 45.0% | |
TTTCATCTGCATTCAAGGCC+AGG | - | chr7.4:12732892-12732911 | MS.gene97007:CDS | 45.0% | |
! | AGTGCATTCATGGTTTGTGC+AGG | + | chr7.4:12733320-12733339 | None:intergenic | 45.0% |
! | CAGGACAACTTTTCTTTGGC+TGG | - | chr7.4:12732583-12732602 | MS.gene97007:CDS | 45.0% |
! | CATGCAGGGTTTCGGAATTT+TGG | - | chr7.4:12732845-12732864 | MS.gene97007:CDS | 45.0% |
! | CATTCATGGTTTGTGCAGGA+GGG | + | chr7.4:12733316-12733335 | None:intergenic | 45.0% |
! | CGTCATGGACTACATTTGCT+TGG | - | chr7.4:12733203-12733222 | MS.gene97007:CDS | 45.0% |
! | GACCAAGCAACTTGGTAACA+AGG | + | chr7.4:12732467-12732486 | None:intergenic | 45.0% |
! | GCGTTGTTATTCTGAGCATG+AGG | + | chr7.4:12733920-12733939 | None:intergenic | 45.0% |
! | TCTTACGAGGTTGATCCAGT+TGG | - | chr7.4:12732927-12732946 | MS.gene97007:CDS | 45.0% |
!! | CAACTTTTCTTTGGCTGGCT+TGG | - | chr7.4:12732588-12732607 | MS.gene97007:CDS | 45.0% |
!! | GTGAATGGTGTTGCTTTCTG+TGG | - | chr7.4:12732552-12732571 | MS.gene97007:CDS | 45.0% |
!!! | TTTTGGCTTGGGTTCGGTAT+TGG | - | chr7.4:12732738-12732757 | MS.gene97007:CDS | 45.0% |
ACAGCAGCTGATACATTGGG+AGG | + | chr7.4:12732534-12732553 | None:intergenic | 50.0% | |
ACATTGGGAGGCAATGTACC+GGG | + | chr7.4:12732522-12732541 | None:intergenic | 50.0% | |
CCCAAGCAGACTACATTTGG+AGG | - | chr7.4:12732961-12732980 | MS.gene97007:CDS | 50.0% | |
CCGATGCGGATGATATTCCA+TGG | + | chr7.4:12733652-12733671 | None:intergenic | 50.0% | |
CGAACCACAGAAAGAGGAGA+AGG | - | chr7.4:12733136-12733155 | MS.gene97007:CDS | 50.0% | |
GCAGTACAGTACCAGGCTAT+TGG | - | chr7.4:12733387-12733406 | MS.gene97007:CDS | 50.0% | |
GCCAAAACCGGAAGAAGCAA+AGG | + | chr7.4:12732725-12732744 | None:intergenic | 50.0% | |
GCGGTATAACGAGCAGTTTC+TGG | + | chr7.4:12733047-12733066 | None:intergenic | 50.0% | |
GCTCTATGCAGTACAGTACC+AGG | - | chr7.4:12733380-12733399 | MS.gene97007:CDS | 50.0% | |
GGAAAGCTTGGGGCTATAGT+TGG | - | chr7.4:12733671-12733690 | MS.gene97007:CDS | 50.0% | |
GGCAAAGACTGCTGCAATGA+AGG | + | chr7.4:12732826-12732845 | None:intergenic | 50.0% | |
GGCAAGAGCAAACATGAAGG+CGG | + | chr7.4:12733480-12733499 | None:intergenic | 50.0% | |
GGTGCTAAATGCGCTTGATG+TGG | - | chr7.4:12732356-12732375 | MS.gene97007:CDS | 50.0% | |
GTCTTTGCCATGCAGGGTTT+CGG | - | chr7.4:12732837-12732856 | MS.gene97007:CDS | 50.0% | |
GTGCACTTTCTTAGTACCCG+AGG | - | chr7.4:12733820-12733839 | MS.gene97007:CDS | 50.0% | |
TACCGAACCCAAGCCAAAAC+CGG | + | chr7.4:12732737-12732756 | None:intergenic | 50.0% | |
TGAAGCCGAACCACAGAAAG+AGG | - | chr7.4:12733130-12733149 | MS.gene97007:CDS | 50.0% | |
TGGGGAACAGTTGAACCAAC+TGG | + | chr7.4:12732945-12732964 | None:intergenic | 50.0% | |
! | CCCTTTGCTTCTTCCGGTTT+TGG | - | chr7.4:12732721-12732740 | MS.gene97007:CDS | 50.0% |
! | GCATTCATGGTTTGTGCAGG+AGG | + | chr7.4:12733317-12733336 | None:intergenic | 50.0% |
! | GGGCTATAGTTGGTGCATTC+GGG | - | chr7.4:12733681-12733700 | MS.gene97007:CDS | 50.0% |
! | GGGGCTATAGTTGGTGCATT+CGG | - | chr7.4:12733680-12733699 | MS.gene97007:CDS | 50.0% |
! | TGGTGGTGACTACCCTCTTT+CGG | - | chr7.4:12732758-12732777 | MS.gene97007:CDS | 50.0% |
!! | ACCAGGCTATTGGTTTACCG+TGG | - | chr7.4:12733397-12733416 | MS.gene97007:CDS | 50.0% |
!! | GGCTGGCTTGGTGATAAGAT+GGG | - | chr7.4:12732600-12732619 | MS.gene97007:CDS | 50.0% |
!! | GGTTTCGGAATTTTGGGAGC+TGG | - | chr7.4:12732852-12732871 | MS.gene97007:CDS | 50.0% |
!! | TGGCTGGCTTGGTGATAAGA+TGG | - | chr7.4:12732599-12732618 | MS.gene97007:CDS | 50.0% |
!!! | GCTTCTTCCGGTTTTGGCTT+GGG | - | chr7.4:12732727-12732746 | MS.gene97007:CDS | 50.0% |
!!! | TGCTTCTTCCGGTTTTGGCT+TGG | - | chr7.4:12732726-12732745 | MS.gene97007:CDS | 50.0% |
!!! | TTCCGGTTTTGGCTTGGGTT+CGG | - | chr7.4:12732732-12732751 | MS.gene97007:CDS | 50.0% |
ATCCGCATCGGGAAAGCTTG+GGG | - | chr7.4:12733661-12733680 | MS.gene97007:CDS | 55.0% | |
CATCCGCATCGGGAAAGCTT+GGG | - | chr7.4:12733660-12733679 | MS.gene97007:CDS | 55.0% | |
GCAGCAGTCTTTGCCATGCA+GGG | - | chr7.4:12732831-12732850 | MS.gene97007:CDS | 55.0% | |
GCCACGGTAAACCAATAGCC+TGG | + | chr7.4:12733401-12733420 | None:intergenic | 55.0% | |
GCTTTGCTGCACCATCAACG+TGG | + | chr7.4:12732500-12732519 | None:intergenic | 55.0% | |
TCATCCGCATCGGGAAAGCT+TGG | - | chr7.4:12733659-12733678 | MS.gene97007:CDS | 55.0% | |
TGCAGCAGTCTTTGCCATGC+AGG | - | chr7.4:12732830-12732849 | MS.gene97007:CDS | 55.0% | |
! | TGGCTTGGGTTCGGTATTGG+TGG | - | chr7.4:12732741-12732760 | MS.gene97007:CDS | 55.0% |
!! | GGCTTGGTGATAAGATGGGC+AGG | - | chr7.4:12732604-12732623 | MS.gene97007:CDS | 55.0% |
!! | GTTGATGGTGCAGCAAAGCC+CGG | - | chr7.4:12732501-12732520 | MS.gene97007:CDS | 55.0% |
AGCCCCAAGCTTTCCCGATG+CGG | + | chr7.4:12733666-12733685 | None:intergenic | 60.0% | |
! | GCAGGGTACCCTGCAGGTAT+TGG | - | chr7.4:12733746-12733765 | MS.gene97007:CDS | 60.0% |
! | GCAGATGCAGGGTACCCTGC+AGG | - | chr7.4:12733740-12733759 | MS.gene97007:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 12732336 | 12733949 | 12732336 | ID=MS.gene97007 |
chr7.4 | mRNA | 12732336 | 12733949 | 12732336 | ID=MS.gene97007.t1;Parent=MS.gene97007 |
chr7.4 | exon | 12732336 | 12733949 | 12732336 | ID=MS.gene97007.t1.exon1;Parent=MS.gene97007.t1 |
chr7.4 | CDS | 12732336 | 12733949 | 12732336 | ID=cds.MS.gene97007.t1;Parent=MS.gene97007.t1 |
Gene Sequence |
Protein sequence |