AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene97406

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97406.t1 MTR_7g088160 38.608 316 161 5 19 307 76 385 1.48e-69 222
MS.gene97406.t1 MTR_4g063670 42.173 313 161 7 10 307 9 316 1.02e-63 205
MS.gene97406.t1 MTR_7g107340 43.894 303 128 6 8 307 68 331 4.53e-63 204
MS.gene97406.t1 MTR_0867s0010 43.987 316 156 7 7 307 7 316 2.11e-62 201
MS.gene97406.t1 MTR_4g083510 40.777 309 161 8 14 307 16 317 4.27e-51 172
MS.gene97406.t1 MTR_7g114170 37.209 301 123 7 7 307 52 286 1.38e-41 146
MS.gene97406.t1 MTR_6g081150 37.083 240 81 6 1 240 1 170 3.39e-38 134
MS.gene97406.t1 MTR_1g051185 38.863 211 94 7 10 215 9 189 1.10e-34 128
MS.gene97406.t1 MTR_3g069460 43.537 147 81 2 24 168 26 172 2.11e-34 124
MS.gene97406.t1 MTR_8g015750 34.450 209 96 7 114 307 1 183 1.43e-21 90.9
MS.gene97406.t1 MTR_4g046740 39.024 123 61 4 187 307 23 133 2.27e-15 72.4
MS.gene97406.t1 MTR_3g067785 26.471 204 129 3 21 218 56 244 8.70e-14 71.6
MS.gene97406.t1 MTR_5g066280 26.471 204 129 3 21 218 56 244 8.95e-14 71.6
MS.gene97406.t1 MTR_4g026120 26.471 204 129 3 21 218 56 244 1.01e-13 71.2
MS.gene97406.t1 MTR_4g036435 26.471 204 129 3 21 218 56 244 1.01e-13 71.2
MS.gene97406.t1 MTR_4g013220 26.471 204 129 3 21 218 56 244 1.46e-13 70.9
MS.gene97406.t1 MTR_6g051405 27.219 169 116 4 6 168 84 251 1.94e-13 70.9
MS.gene97406.t1 MTR_2g072860 26.627 169 117 4 6 168 16 183 3.02e-13 69.7
MS.gene97406.t1 MTR_3g450670 25.143 175 120 3 5 168 73 247 4.99e-13 69.7
MS.gene97406.t1 MTR_1g471070 25.143 175 120 3 5 168 73 247 4.99e-13 69.7
MS.gene97406.t1 MTR_8g015740 48.684 76 37 1 7 80 55 130 5.60e-13 65.5
MS.gene97406.t1 MTR_3g464170 26.627 169 117 4 6 168 84 251 1.15e-12 68.6
MS.gene97406.t1 MTR_1g100375 26.627 169 117 4 6 168 84 251 1.15e-12 68.6
MS.gene97406.t1 MTR_2g022120 25.604 207 133 3 18 218 117 308 1.48e-12 68.2
MS.gene97406.t1 MTR_7g062380 25.000 180 120 2 38 217 14 178 1.53e-12 67.4
MS.gene97406.t1 MTR_1g106885 26.087 207 132 3 18 218 114 305 1.53e-12 68.2
MS.gene97406.t1 MTR_7g461350 26.036 169 118 4 6 168 84 251 1.56e-12 68.2
MS.gene97406.t1 MTR_6g016670 26.036 169 118 4 6 168 84 251 1.56e-12 68.2
MS.gene97406.t1 MTR_3g464310 26.036 169 118 4 6 168 84 251 1.56e-12 68.2
MS.gene97406.t1 MTR_6g453050 25.405 185 124 4 15 186 50 233 1.70e-12 67.8
MS.gene97406.t1 MTR_7g083520 26.797 153 104 3 21 166 30 181 1.85e-12 67.4
MS.gene97406.t1 MTR_6g092533 25.478 157 111 1 18 168 117 273 3.45e-12 67.0
MS.gene97406.t1 MTR_5g077245 26.797 153 106 1 22 168 110 262 4.44e-12 67.0
MS.gene97406.t1 MTR_1g086750 26.923 130 95 0 38 167 14 143 1.46e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97406.t1 AT5G41220 36.638 232 133 8 7 228 174 401 1.49e-31 124
MS.gene97406.t1 AT5G41220 36.638 232 133 8 7 228 182 409 1.82e-31 124
MS.gene97406.t1 AT5G41220 36.638 232 133 8 7 228 232 459 1.98e-31 124
MS.gene97406.t1 AT5G41240 36.275 204 110 7 37 226 261 458 3.40e-26 109
MS.gene97406.t1 AT3G47680 33.878 245 128 8 40 275 40 259 3.45e-24 100
MS.gene97406.t1 AT1G66235 28.947 190 117 5 50 224 7 193 2.82e-12 66.6

Find 64 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGCAATTCTCTACTCAAAT+TGG 0.240436 2.4:+34020508 MS.gene97406:CDS
AATTGCATCTCCCTTCCATT+TGG 0.301545 2.4:-34020947 None:intergenic
GCGAATTATGTAACTTTGTT+TGG 0.321207 2.4:-34022464 None:intergenic
ATTGCATCTCCCTTCCATTT+GGG 0.325205 2.4:-34020946 None:intergenic
ATTCTCACTCTCCCTTGCTT+TGG 0.347043 2.4:-34021250 None:intergenic
GAATTGCGACATGTCGTTAC+CGG 0.373955 2.4:-34020494 None:intergenic
GAACATTCAATAGGTGTTCC+TGG 0.375216 2.4:-34021030 None:intergenic
TCTAGCGGTGGTGTGGATTC+CGG 0.384319 2.4:+34020475 MS.gene97406:CDS
ATTTCGAAGGACTCAATTGT+TGG 0.421062 2.4:+34020643 MS.gene97406:CDS
GAAAATATTAAGCTCGATGA+AGG 0.423359 2.4:+34020535 MS.gene97406:CDS
GGCCGTATTCAGAAGTTTGT+TGG 0.432458 2.4:+34020784 MS.gene97406:CDS
ACGCAAAAGAACTGTAATAC+TGG 0.433626 2.4:-34022525 None:intergenic
GAACAAAGATTTCTAGTAGT+GGG 0.434054 2.4:+34020986 MS.gene97406:CDS
AATTCCTTCATGTGCATGCT+TGG 0.435032 2.4:+34020905 MS.gene97406:CDS
ATAGAAATGTTATCATGTTA+AGG 0.443110 2.4:+34021181 MS.gene97406:CDS
GCTCGATATCACCGTTTGAA+TGG 0.444599 2.4:+34020763 MS.gene97406:CDS
TAATGTTGATTTATCTGTCA+TGG 0.461525 2.4:+34021143 MS.gene97406:CDS
ACACACTTCTATTTCAATCA+TGG 0.464422 2.4:+34020614 MS.gene97406:CDS
TCATAGTCTGAACATTCAAT+AGG 0.474267 2.4:-34021039 None:intergenic
TCACCAGTGGTCCGTCCAAT+GGG 0.486184 2.4:+34021069 MS.gene97406:CDS
TGTCCCATTGGACGGACCAC+TGG 0.491106 2.4:-34021072 None:intergenic
GCCCTTAATCAAAACAAAAG+TGG 0.500880 2.4:+34020820 MS.gene97406:CDS
ATCACCAGTGGTCCGTCCAA+TGG 0.508407 2.4:+34021068 MS.gene97406:CDS
AGCCAACAAACTTCTGAATA+CGG 0.508865 2.4:-34020786 None:intergenic
TCTGAATACGGCCATTCAAA+CGG 0.525249 2.4:-34020774 None:intergenic
GATGGCTGAAGCAAGGGAAA+AGG 0.525675 2.4:+34021203 MS.gene97406:CDS
TATGTGGTGTAGGCCTCCAA+TGG 0.529583 2.4:+34020450 None:intergenic
TATTGAAAGATGAACCCAAA+TGG 0.531109 2.4:+34020932 MS.gene97406:CDS
ACGCTCTGAGAATGATGTCT+TGG 0.531457 2.4:+34020843 MS.gene97406:CDS
CAAATTCCAATATGTGGTGT+AGG 0.537043 2.4:+34020440 None:intergenic
TATACAACATCTTCAAATCC+AGG 0.538731 2.4:+34021012 MS.gene97406:CDS
ATAATTCGCTACACTAGGTA+TGG 0.547196 2.4:+34022478 MS.gene97406:CDS
AGAGTGAGAATGAGACAAAG+TGG 0.548397 2.4:+34021262 MS.gene97406:CDS
ATGTGGTGTAGGCCTCCAAT+GGG 0.549587 2.4:+34020451 MS.gene97406:CDS
GTTAAGGATGGCTGAAGCAA+GGG 0.552337 2.4:+34021197 MS.gene97406:CDS
GAAAGATGAACCCAAATGGA+AGG 0.553367 2.4:+34020936 MS.gene97406:CDS
GTGGTATGAAATCCTCATCA+AGG 0.556672 2.4:+34021281 MS.gene97406:CDS
GGCTGAAGCAAGAGAAAGAG+AGG 0.562193 2.4:+34021227 MS.gene97406:CDS
TAGTAGTTGTATCCTTGATG+AGG 0.564103 2.4:-34021293 None:intergenic
AGAACAAAGATTTCTAGTAG+TGG 0.567228 2.4:+34020985 MS.gene97406:CDS
ACATCCAAGCATGCACATGA+AGG 0.568482 2.4:-34020909 None:intergenic
AGAAAGAGAGGCCAAAGCAA+GGG 0.570183 2.4:+34021239 MS.gene97406:CDS
TGTTAAGGATGGCTGAAGCA+AGG 0.574606 2.4:+34021196 MS.gene97406:CDS
ATTGGACGGACCACTGGTGA+TGG 0.575271 2.4:-34021066 None:intergenic
AATGGGTTCTAGCGGTGGTG+TGG 0.575768 2.4:+34020468 MS.gene97406:CDS
TGAGAATGATGTCTTGGCTG+AGG 0.576801 2.4:+34020849 MS.gene97406:CDS
AACAAAGATTTCTAGTAGTG+GGG 0.581273 2.4:+34020987 MS.gene97406:CDS
ACAAAGATTTCTAGTAGTGG+GGG 0.585288 2.4:+34020988 MS.gene97406:CDS
ATGTCTTGGCTGAGGCACAT+AGG 0.590198 2.4:+34020857 MS.gene97406:CDS
AAAGATGAACCCAAATGGAA+GGG 0.591218 2.4:+34020937 MS.gene97406:CDS
ATCATGGCTCAACATTTCGA+AGG 0.593264 2.4:+34020630 MS.gene97406:CDS
CCTCCAATGGGTTCTAGCGG+TGG 0.596036 2.4:+34020463 MS.gene97406:CDS
GGCTGAAGCAAGGGAAAAGG+AGG 0.596279 2.4:+34021206 MS.gene97406:CDS
GAGAAAGAGAGGCCAAAGCA+AGG 0.597749 2.4:+34021238 MS.gene97406:CDS
AAATGTTATCATGTTAAGGA+TGG 0.603681 2.4:+34021185 MS.gene97406:CDS
CCACCGCTAGAACCCATTGG+AGG 0.604763 2.4:-34020463 None:intergenic
ACACCACCGCTAGAACCCAT+TGG 0.607694 2.4:-34020466 None:intergenic
GTAGTCGCGAATTCGTAAGC+GGG 0.611791 2.4:-34022503 None:intergenic
GGTAGTCGCGAATTCGTAAG+CGG 0.647685 2.4:-34022504 None:intergenic
AGGCCTCCAATGGGTTCTAG+CGG 0.662393 2.4:+34020460 MS.gene97406:CDS
GTTACATAATTCGCTACACT+AGG 0.669950 2.4:+34022473 MS.gene97406:CDS
CAAAGATTTCTAGTAGTGGG+GGG 0.678338 2.4:+34020989 MS.gene97406:CDS
CTATGAACAGCCATCACCAG+TGG 0.697983 2.4:+34021056 MS.gene97406:CDS
GACAACTACAACATCTACCG+CGG 0.719950 2.4:+34020706 MS.gene97406:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTAAAAATTAATCAAAG+AGG - chr2.4:34022388-34022407 None:intergenic 15.0%
!! AGAAATAATGATTATGAATT+TGG + chr2.4:34022313-34022332 MS.gene97406:intron 15.0%
!! TGTAAAAAAATTGAATTCTA+AGG + chr2.4:34022226-34022245 MS.gene97406:intron 15.0%
!!! TAATTTTTAGTTTTGTTTCA+TGG + chr2.4:34022395-34022414 MS.gene97406:intron 15.0%
!!! TTAGAATTCAATTTTTTTAC+AGG - chr2.4:34022227-34022246 None:intergenic 15.0%
!! ATAGAAATGTTATCATGTTA+AGG + chr2.4:34021181-34021200 MS.gene97406:CDS 20.0%
!! TAAGGTTATGAAAGAATTTA+GGG + chr2.4:34022244-34022263 MS.gene97406:intron 20.0%
!!! GTCAAACTTTTTATTGAAAA+TGG + chr2.4:34022175-34022194 MS.gene97406:intron 20.0%
! AAATGTTATCATGTTAAGGA+TGG + chr2.4:34021185-34021204 MS.gene97406:CDS 25.0%
! CTAAGGTTATGAAAGAATTT+AGG + chr2.4:34022243-34022262 MS.gene97406:intron 25.0%
! TATTGAAAATGGAATGATGA+TGG + chr2.4:34022186-34022205 MS.gene97406:intron 25.0%
! TGTTAGGTCATTAATCATTA+GGG + chr2.4:34022037-34022056 MS.gene97406:intron 25.0%
! TTAACCAACATAACAGTAAA+AGG - chr2.4:34022345-34022364 None:intergenic 25.0%
! TTGTTAGGTCATTAATCATT+AGG + chr2.4:34022036-34022055 MS.gene97406:intron 25.0%
! TTTGTTTGGTACATCTATAT+AGG - chr2.4:34022453-34022472 None:intergenic 25.0%
!!! ACGAGTTTTAGTTTTTTTCT+TGG - chr2.4:34020572-34020591 None:intergenic 25.0%
!!! AGCCTTTTAAAAAAACTAGT+CGG + chr2.4:34021619-34021638 MS.gene97406:intron 25.0%
!!! AGGATCTCTTTTGAAAATTT+GGG - chr2.4:34022067-34022086 None:intergenic 25.0%
!!! TAATGTTGATTTATCTGTCA+TGG + chr2.4:34021143-34021162 MS.gene97406:CDS 25.0%
!!! TACCGACTAGTTTTTTTAAA+AGG - chr2.4:34021624-34021643 None:intergenic 25.0%
!!! TAGGATCTCTTTTGAAAATT+TGG - chr2.4:34022068-34022087 None:intergenic 25.0%
!!! TATAACGGCTAGTTTTTTAA+CGG - chr2.4:34021656-34021675 None:intergenic 25.0%
!!! TCCACTTTTGTTTTGATTAA+GGG - chr2.4:34020824-34020843 None:intergenic 25.0%
!!! TTTTACCGACTAGTTTATAA+CGG - chr2.4:34021671-34021690 None:intergenic 25.0%
AATTTCACATCTCAAAGAGA+AGG - chr2.4:34022120-34022139 None:intergenic 30.0%
ACACACTTCTATTTCAATCA+TGG + chr2.4:34020614-34020633 MS.gene97406:CDS 30.0%
AGGATTATTTACGTAAGCAT+TGG - chr2.4:34022433-34022452 None:intergenic 30.0%
CATCTCAACAATAACAAAAG+AGG - chr2.4:34022287-34022306 None:intergenic 30.0%
CCATTTAAGTACCCAAAAAT+GGG + chr2.4:34021856-34021875 MS.gene97406:intron 30.0%
GAAAATATTAAGCTCGATGA+AGG + chr2.4:34020535-34020554 MS.gene97406:CDS 30.0%
GCGAATTATGTAACTTTGTT+TGG - chr2.4:34022467-34022486 None:intergenic 30.0%
TATACAACATCTTCAAATCC+AGG + chr2.4:34021012-34021031 MS.gene97406:CDS 30.0%
TATTGAAAGATGAACCCAAA+TGG + chr2.4:34020932-34020951 MS.gene97406:CDS 30.0%
TCATAGTCTGAACATTCAAT+AGG - chr2.4:34021042-34021061 None:intergenic 30.0%
! ACCAAAAATCAGATGGTTTT+TGG + chr2.4:34020671-34020690 MS.gene97406:CDS 30.0%
! ATCATGAATTTTGTTGCAGT+CGG + chr2.4:34021337-34021356 MS.gene97406:CDS 30.0%
! ATGTCCTTTTACTGTTATGT+TGG + chr2.4:34022338-34022357 MS.gene97406:intron 30.0%
! TCCAAAAACCATCTGATTTT+TGG - chr2.4:34020675-34020694 None:intergenic 30.0%
!! AACAAAGATTTCTAGTAGTG+GGG + chr2.4:34020987-34021006 MS.gene97406:CDS 30.0%
!! AGAACAAAGATTTCTAGTAG+TGG + chr2.4:34020985-34021004 MS.gene97406:CDS 30.0%
!! AGTCTTATTTGGACTTTGTT+AGG + chr2.4:34022021-34022040 MS.gene97406:intron 30.0%
!! GAACAAAGATTTCTAGTAGT+GGG + chr2.4:34020986-34021005 MS.gene97406:CDS 30.0%
!! TCTCTTTGAGATGTGAAATT+CGG + chr2.4:34022120-34022139 MS.gene97406:intron 30.0%
!!! ACTTTTGTTTTGATTAAGGG+CGG - chr2.4:34020821-34020840 None:intergenic 30.0%
!!! ATTTGACCTGTTTCCTTTTT+TGG - chr2.4:34020739-34020758 None:intergenic 30.0%
!!! CCATTTTTGGGTACTTAAAT+GGG - chr2.4:34021858-34021877 None:intergenic 30.0%
!!! GTCCACTTTTGTTTTGATTA+AGG - chr2.4:34020825-34020844 None:intergenic 30.0%
!!! TATAACGGCTAGTTTTTTAC+CGG - chr2.4:34021729-34021748 None:intergenic 30.0%
!!! TTATAACGGCTAGTTTTTAC+CGG - chr2.4:34021758-34021777 None:intergenic 30.0%
!!! TTTTACCGGCTAGTTTATAA+CGG - chr2.4:34021715-34021734 None:intergenic 30.0%
AAAGATGAACCCAAATGGAA+GGG + chr2.4:34020937-34020956 MS.gene97406:CDS 35.0%
AATAAGACTTGTCAAGAGCA+AGG - chr2.4:34022010-34022029 None:intergenic 35.0%
ACAAAAAGCAGCAAAAAGGA+AGG + chr2.4:34021092-34021111 MS.gene97406:CDS 35.0%
ACGCAAAAGAACTGTAATAC+TGG - chr2.4:34022528-34022547 None:intergenic 35.0%
ACTAGCCGTTATAAACTAGT+CGG + chr2.4:34021663-34021682 MS.gene97406:intron 35.0%
AGCCAACAAACTTCTGAATA+CGG - chr2.4:34020789-34020808 None:intergenic 35.0%
AGGATTTCTTCAAAACTCAC+CGG + chr2.4:34021901-34021920 MS.gene97406:intron 35.0%
ATAATTCGCTACACTAGGTA+TGG + chr2.4:34022478-34022497 MS.gene97406:CDS 35.0%
ATTCGGAAAAGCTAATGTAG+AGG + chr2.4:34022137-34022156 MS.gene97406:intron 35.0%
ATTTCGAAGGACTCAATTGT+TGG + chr2.4:34020643-34020662 MS.gene97406:CDS 35.0%
CAAAAAGCAGCAAAAAGGAA+GGG + chr2.4:34021093-34021112 MS.gene97406:CDS 35.0%
CAACTACCAAAAAAGGAAAC+AGG + chr2.4:34020730-34020749 MS.gene97406:CDS 35.0%
CCCATTTAAGTACCCAAAAA+TGG + chr2.4:34021855-34021874 MS.gene97406:intron 35.0%
CGGACACAACAATCAAATAT+AGG - chr2.4:34022087-34022106 None:intergenic 35.0%
GCCCTTAATCAAAACAAAAG+TGG + chr2.4:34020820-34020839 MS.gene97406:CDS 35.0%
GTTACATAATTCGCTACACT+AGG + chr2.4:34022473-34022492 MS.gene97406:CDS 35.0%
TAAAAGAGTGATGTGTGTGT+GGG + chr2.4:34021831-34021850 MS.gene97406:intron 35.0%
TAGTAGTTGTATCCTTGATG+AGG - chr2.4:34021296-34021315 None:intergenic 35.0%
TCGCAATTCTCTACTCAAAT+TGG + chr2.4:34020508-34020527 MS.gene97406:CDS 35.0%
TGCTTATTGTTTCACGTTGA+AGG + chr2.4:34021488-34021507 MS.gene97406:intron 35.0%
! AATTTTGTTGCAGTCGGATT+AGG + chr2.4:34021343-34021362 MS.gene97406:CDS 35.0%
! TGATTGTTGTGTCCGAATTT+TGG + chr2.4:34022092-34022111 MS.gene97406:intron 35.0%
!! AAAATGGAATGATGATGGAG+AGG + chr2.4:34022191-34022210 MS.gene97406:intron 35.0%
!! AAAGAGAAGGCACCAAAATT+CGG - chr2.4:34022107-34022126 None:intergenic 35.0%
!! ACAAAGATTTCTAGTAGTGG+GGG + chr2.4:34020988-34021007 MS.gene97406:CDS 35.0%
!! TGCTCTTGACAAGTCTTATT+TGG + chr2.4:34022010-34022029 MS.gene97406:intron 35.0%
!!! CCCATTTTTGGGTACTTAAA+TGG - chr2.4:34021859-34021878 None:intergenic 35.0%
AAAAATGGGTGTCTCCATTG+TGG + chr2.4:34021870-34021889 MS.gene97406:intron 40.0%
AATTCCTTCATGTGCATGCT+TGG + chr2.4:34020905-34020924 MS.gene97406:CDS 40.0%
AATTGCATCTCCCTTCCATT+TGG - chr2.4:34020950-34020969 None:intergenic 40.0%
ACTAGCCGTTATAAACTAGC+CGG + chr2.4:34021707-34021726 MS.gene97406:intron 40.0%
AGAGTGAGAATGAGACAAAG+TGG + chr2.4:34021262-34021281 MS.gene97406:CDS 40.0%
ATCATGGCTCAACATTTCGA+AGG + chr2.4:34020630-34020649 MS.gene97406:CDS 40.0%
ATTGCATCTCCCTTCCATTT+GGG - chr2.4:34020949-34020968 None:intergenic 40.0%
GAAAGATGAACCCAAATGGA+AGG + chr2.4:34020936-34020955 MS.gene97406:CDS 40.0%
GAACATTCAATAGGTGTTCC+TGG - chr2.4:34021033-34021052 None:intergenic 40.0%
GTAAAAGAGTGATGTGTGTG+TGG + chr2.4:34021830-34021849 MS.gene97406:intron 40.0%
GTGGTATGAAATCCTCATCA+AGG + chr2.4:34021281-34021300 MS.gene97406:CDS 40.0%
TCTGAATACGGCCATTCAAA+CGG - chr2.4:34020777-34020796 None:intergenic 40.0%
TGAAAACAGTGCGACAATAG+TGG - chr2.4:34021948-34021967 None:intergenic 40.0%
TGGGACAAAAAGCAGCAAAA+AGG + chr2.4:34021088-34021107 MS.gene97406:CDS 40.0%
! ACAATGGAGACACCCATTTT+TGG - chr2.4:34021871-34021890 None:intergenic 40.0%
! CACACACATCACTCTTTTAC+CGG - chr2.4:34021830-34021849 None:intergenic 40.0%
!! AATCCTAAGAGCATCCACAA+TGG - chr2.4:34021887-34021906 None:intergenic 40.0%
!! CAAAGATTTCTAGTAGTGGG+GGG + chr2.4:34020989-34021008 MS.gene97406:CDS 40.0%
!! CAATGGAGACACCCATTTTT+GGG - chr2.4:34021870-34021889 None:intergenic 40.0%
!!! TTTGCTGCTTTTTGTCCCAT+TGG - chr2.4:34021087-34021106 None:intergenic 40.0%
ACATCCAAGCATGCACATGA+AGG - chr2.4:34020912-34020931 None:intergenic 45.0%
AGAAAGAGAGGCCAAAGCAA+GGG + chr2.4:34021239-34021258 MS.gene97406:CDS 45.0%
ATTCTCACTCTCCCTTGCTT+TGG - chr2.4:34021253-34021272 None:intergenic 45.0%
GAACCTAGTGTCTTGAGAAC+CGG - chr2.4:34021923-34021942 None:intergenic 45.0%
GAATTGCGACATGTCGTTAC+CGG - chr2.4:34020497-34020516 None:intergenic 45.0%
GACAACTACAACATCTACCG+CGG + chr2.4:34020706-34020725 MS.gene97406:CDS 45.0%
GCTCGATATCACCGTTTGAA+TGG + chr2.4:34020763-34020782 MS.gene97406:CDS 45.0%
GGAGTCGACCAAAAATCAGA+TGG + chr2.4:34020664-34020683 MS.gene97406:CDS 45.0%
GGCCGTATTCAGAAGTTTGT+TGG + chr2.4:34020784-34020803 MS.gene97406:CDS 45.0%
GTTAAGGATGGCTGAAGCAA+GGG + chr2.4:34021197-34021216 MS.gene97406:CDS 45.0%
TCTCCATTGTGGATGCTCTT+AGG + chr2.4:34021881-34021900 MS.gene97406:intron 45.0%
TGAGAATGATGTCTTGGCTG+AGG + chr2.4:34020849-34020868 MS.gene97406:CDS 45.0%
TGTTAAGGATGGCTGAAGCA+AGG + chr2.4:34021196-34021215 MS.gene97406:CDS 45.0%
! AGTCGGATTAGGCAGAAGTT+AGG + chr2.4:34021354-34021373 MS.gene97406:intron 45.0%
!! ACGCTCTGAGAATGATGTCT+TGG + chr2.4:34020843-34020862 MS.gene97406:CDS 45.0%
!!! CCTTTTTTGGTAGTTGACCG+CGG - chr2.4:34020726-34020745 None:intergenic 45.0%
!!! CTGCTTTTTGTCCCATTGGA+CGG - chr2.4:34021083-34021102 None:intergenic 45.0%
ATGTCTTGGCTGAGGCACAT+AGG + chr2.4:34020857-34020876 MS.gene97406:CDS 50.0%
ATGTGGTGTAGGCCTCCAAT+GGG + chr2.4:34020451-34020470 MS.gene97406:CDS 50.0%
CCGCGGTCAACTACCAAAAA+AGG + chr2.4:34020723-34020742 MS.gene97406:CDS 50.0%
CTATGAACAGCCATCACCAG+TGG + chr2.4:34021056-34021075 MS.gene97406:CDS 50.0%
GAGAAAGAGAGGCCAAAGCA+AGG + chr2.4:34021238-34021257 MS.gene97406:CDS 50.0%
GATGGCTGAAGCAAGGGAAA+AGG + chr2.4:34021203-34021222 MS.gene97406:CDS 50.0%
GCAGCAAAAAGGAAGGGCAA+AGG + chr2.4:34021099-34021118 MS.gene97406:CDS 50.0%
GGCTGAAGCAAGAGAAAGAG+AGG + chr2.4:34021227-34021246 MS.gene97406:CDS 50.0%
GGTAGTCGCGAATTCGTAAG+CGG - chr2.4:34022507-34022526 None:intergenic 50.0%
GTAGTCGCGAATTCGTAAGC+GGG - chr2.4:34022506-34022525 None:intergenic 50.0%
!! TCACCGGTTCTCAAGACACT+AGG + chr2.4:34021917-34021936 MS.gene97406:intron 50.0%
ACACCACCGCTAGAACCCAT+TGG - chr2.4:34020469-34020488 None:intergenic 55.0%
ATCACCAGTGGTCCGTCCAA+TGG + chr2.4:34021068-34021087 MS.gene97406:CDS 55.0%
ATTGGACGGACCACTGGTGA+TGG - chr2.4:34021069-34021088 None:intergenic 55.0%
GGCTGAAGCAAGGGAAAAGG+AGG + chr2.4:34021206-34021225 MS.gene97406:CDS 55.0%
TCACCAGTGGTCCGTCCAAT+GGG + chr2.4:34021069-34021088 MS.gene97406:CDS 55.0%
TCTAGCGGTGGTGTGGATTC+CGG + chr2.4:34020475-34020494 MS.gene97406:CDS 55.0%
! AATGGGTTCTAGCGGTGGTG+TGG + chr2.4:34020468-34020487 MS.gene97406:CDS 55.0%
! AGGCCTCCAATGGGTTCTAG+CGG + chr2.4:34020460-34020479 MS.gene97406:CDS 55.0%
CCACCGCTAGAACCCATTGG+AGG - chr2.4:34020466-34020485 None:intergenic 60.0%
TGTCCCATTGGACGGACCAC+TGG - chr2.4:34021075-34021094 None:intergenic 60.0%
! CCTCCAATGGGTTCTAGCGG+TGG + chr2.4:34020463-34020482 MS.gene97406:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 34020451 34022552 34020451 ID=MS.gene97406
chr2.4 mRNA 34020451 34022552 34020451 ID=MS.gene97406.t1;Parent=MS.gene97406
chr2.4 exon 34020451 34021370 34020451 ID=MS.gene97406.t1.exon1;Parent=MS.gene97406.t1
chr2.4 CDS 34020451 34021370 34020451 ID=cds.MS.gene97406.t1;Parent=MS.gene97406.t1
chr2.4 exon 34022459 34022552 34022459 ID=MS.gene97406.t1.exon2;Parent=MS.gene97406.t1
chr2.4 CDS 34022459 34022552 34022459 ID=cds.MS.gene97406.t1;Parent=MS.gene97406.t1
Gene Sequence

>MS.gene97406

ATGTGGTGTAGGCCTCCAATGGGTTCTAGCGGTGGTGTGGATTCCGGTAACGACATGTCGCAATTCTCTACTCAAATTGGTTTAGAAAATATTAAGCTCGATGAAGGACAAAGTTCTACCAAGAAAAAAACTAAAACTCGTGCGAGTTTTTCGCAAGAAGAAGACACACTTCTATTTCAATCATGGCTCAACATTTCGAAGGACTCAATTGTTGGAGTCGACCAAAAATCAGATGGTTTTTGGAATAGAGTCAGAGACAACTACAACATCTACCGCGGTCAACTACCAAAAAAGGAAACAGGTCAAATAAAAGCTCGATATCACCGTTTGAATGGCCGTATTCAGAAGTTTGTTGGCTGCTACAAGTCCGCCCTTAATCAAAACAAAAGTGGACGCTCTGAGAATGATGTCTTGGCTGAGGCACATAGGATTTACGCACAAGACACTAAAAAAAAATTCCTTCATGTGCATGCTTGGATGTTATTGAAAGATGAACCCAAATGGAAGGGAGATGCAATTGAAAACTTTTCAAAAAGAACAAAGATTTCTAGTAGTGGGGGGTATACAACATCTTCAAATCCAGGAACACCTATTGAATGTTCAGACTATGAACAGCCATCACCAGTGGTCCGTCCAATGGGACAAAAAGCAGCAAAAAGGAAGGGCAAAGGAAAAGCAGCAATGTCTTCTACTAATGTTGATTTATCTGTCATGGAAAAAGTTGCAGCAGATAGAAATGTTATCATGTTAAGGATGGCTGAAGCAAGGGAAAAGGAGGCTGAAGCAAGAGAAAGAGAGGCCAAAGCAAGGGAGAGTGAGAATGAGACAAAGTGGTATGAAATCCTCATCAAGGATACAACTACTATGAATGAAAGACAACTTCAAGATCATGAATTTTGTTGCAGTCGGATTAGGCAGAAGTTAGGAATGAATTAACTAATATTGTAATTTTATTTATTTTCATTTAAGTTTAATGCTTATTGTTGTAATCTTGAATTTAATTGAATTTCATTTTAAGTTAAATGTTCATTTAAGTATGCTTATTGTTTCACGTTGAAGGATACAACTACTATGCTTATTGTTTCACGTTGATTCACGTTTACTGTGTTCATTCAAGTTTAATTTTGAATTTGTATTAGCAGTTAATAAATTAGTCATTTAAAAAACTAGCCTTTTAAAAAAACTAGTCGGTAAAAAACTAACCGTTAAAAAACTAGCCGTTATAAACTAGTCGGTAAAAAACTAACCGTTAAAAAACTAGCCGTTATAAACTAGCCGGTAAAAAACTAGCCGTTATAAACTAGCCGGTAAAAACTAGCCGTTATAAACTAGTCGGTAAAAAACTAACCGTTAAAAAACTAGCCGTTATAAACTAGCCGGTAAAAGAGTGATGTGTGTGTGGGACCCATTTAAGTACCCAAAAATGGGTGTCTCCATTGTGGATGCTCTTAGGATTTCTTCAAAACTCACCGGTTCTCAAGACACTAGGTTCTGCCACTATTGTCGCACTGTTTTCATACAAGCATCGTGAATCATGTCTTTTTTGTTTTGATTTTCCTTGCTCTTGACAAGTCTTATTTGGACTTTGTTAGGTCATTAATCATTAGGGAATACCCAAATTTTCAAAAGAGATCCTATATTTGATTGTTGTGTCCGAATTTTGGTGCCTTCTCTTTGAGATGTGAAATTCGGAAAAGCTAATGTAGAGGAGCATGAACTTTTTAGTCAAACTTTTTATTGAAAATGGAATGATGATGGAGAGGATAATTTTCTCCTGTAAAAAAATTGAATTCTAAGGTTATGAAAGAATTTAGGGAGAATTTAAGAAAGTTTCCTCTTTTGTTATTGTTGAGATGTCATATAGAAATAATGATTATGAATTTGGTAATGTCCTTTTACTGTTATGTTGGTTAATGAAAGTTTTTCTACTAGAACCTCTTTGATTAATTTTTAGTTTTGTTTCATGGTATAAAGATTGACCAATGCTTACGTAAATAATCCTATATAGATGTACCAAACAAAGTTACATAATTCGCTACACTAGGTATGGCACCCGCTTACGAATTCGCGACTACCAGTATTACAGTTCTTTTGCGTGTTAG
Protein sequence

>MS.gene97406.t1

MWCRPPMGSSGGVDSGNDMSQFSTQIGLENIKLDEGQSSTKKKTKTRASFSQEEDTLLFQSWLNISKDSIVGVDQKSDGFWNRVRDNYNIYRGQLPKKETGQIKARYHRLNGRIQKFVGCYKSALNQNKSGRSENDVLAEAHRIYAQDTKKKFLHVHAWMLLKDEPKWKGDAIENFSKRTKISSSGGYTTSSNPGTPIECSDYEQPSPVVRPMGQKAAKRKGKGKAAMSSTNVDLSVMEKVAADRNVIMLRMAEAREKEAEAREREAKARESENETKWYEILIKDTTTMNERQLQDHEFCCSRIRQKCTKQSYIIRYTRYGTRLRIRDYQYYSSFAC