Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97631.t1 | XP_013467649.1 | 83.3 | 383 | 31 | 2 | 1 | 383 | 1 | 350 | 3.60E-164 | 587.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97631.t1 | Q9M2Q6 | 36.4 | 324 | 131 | 8 | 1 | 316 | 5 | 261 | 6.1e-35 | 149.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97631.t1 | A0A072VJ94 | 83.3 | 383 | 31 | 2 | 1 | 383 | 1 | 350 | 2.6e-164 | 587.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene97631.t1 | TF | SBP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018772 | MS.gene97631 | PPI |
| MS.gene04607 | MS.gene97631 | PPI |
| MS.gene04608 | MS.gene97631 | PPI |
| MS.gene017969 | MS.gene97631 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97631.t1 | MTR_1g053715 | 82.834 | 367 | 30 | 2 | 17 | 383 | 17 | 350 | 0.0 | 590 |
| MS.gene97631.t1 | MTR_7g092930 | 48.238 | 369 | 116 | 12 | 23 | 380 | 17 | 321 | 1.31e-79 | 248 |
| MS.gene97631.t1 | MTR_3g085180 | 32.468 | 308 | 150 | 8 | 8 | 307 | 111 | 368 | 5.06e-31 | 122 |
| MS.gene97631.t1 | MTR_7g444860 | 40.361 | 166 | 60 | 3 | 20 | 185 | 101 | 227 | 3.94e-25 | 104 |
| MS.gene97631.t1 | MTR_8g005960 | 37.838 | 185 | 65 | 4 | 2 | 182 | 124 | 262 | 1.09e-24 | 103 |
| MS.gene97631.t1 | MTR_5g046670 | 45.238 | 126 | 38 | 2 | 77 | 202 | 244 | 338 | 1.12e-24 | 105 |
| MS.gene97631.t1 | MTR_2g461920 | 49.057 | 106 | 24 | 1 | 77 | 182 | 171 | 246 | 2.22e-23 | 102 |
| MS.gene97631.t1 | MTR_3g099080 | 37.647 | 170 | 67 | 3 | 18 | 183 | 40 | 174 | 3.85e-23 | 99.8 |
| MS.gene97631.t1 | MTR_8g463140 | 46.789 | 109 | 28 | 1 | 77 | 185 | 65 | 143 | 6.01e-23 | 95.1 |
| MS.gene97631.t1 | MTR_4g088555 | 48.077 | 104 | 24 | 1 | 77 | 180 | 63 | 136 | 1.53e-22 | 92.8 |
| MS.gene97631.t1 | MTR_4g109770 | 31.270 | 307 | 130 | 12 | 20 | 288 | 74 | 337 | 2.23e-22 | 98.6 |
| MS.gene97631.t1 | MTR_8g096780 | 43.220 | 118 | 31 | 2 | 77 | 188 | 99 | 186 | 5.53e-22 | 96.7 |
| MS.gene97631.t1 | MTR_8g080690 | 31.667 | 240 | 123 | 4 | 76 | 307 | 150 | 356 | 1.50e-21 | 95.5 |
| MS.gene97631.t1 | MTR_2g014200 | 47.115 | 104 | 25 | 1 | 77 | 180 | 64 | 137 | 1.75e-21 | 90.1 |
| MS.gene97631.t1 | MTR_8g080670 | 37.195 | 164 | 52 | 3 | 16 | 179 | 122 | 234 | 3.63e-21 | 94.7 |
| MS.gene97631.t1 | MTR_1g035010 | 43.220 | 118 | 37 | 1 | 77 | 194 | 104 | 191 | 6.73e-20 | 92.4 |
| MS.gene97631.t1 | MTR_7g110320 | 45.192 | 104 | 27 | 1 | 77 | 180 | 145 | 218 | 1.59e-19 | 90.9 |
| MS.gene97631.t1 | MTR_7g110320 | 45.192 | 104 | 27 | 1 | 77 | 180 | 145 | 218 | 2.53e-19 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97631.t1 | AT3G57920 | 38.158 | 304 | 109 | 9 | 23 | 316 | 27 | 261 | 2.88e-42 | 151 |
| MS.gene97631.t1 | AT2G42200 | 39.855 | 276 | 106 | 8 | 23 | 290 | 32 | 255 | 1.11e-38 | 142 |
| MS.gene97631.t1 | AT2G33810 | 48.077 | 104 | 24 | 1 | 77 | 180 | 54 | 127 | 8.38e-24 | 95.9 |
| MS.gene97631.t1 | AT5G43270 | 40.964 | 166 | 55 | 3 | 22 | 183 | 119 | 245 | 1.66e-23 | 101 |
| MS.gene97631.t1 | AT5G43270 | 40.964 | 166 | 55 | 3 | 22 | 183 | 119 | 245 | 1.66e-23 | 101 |
| MS.gene97631.t1 | AT5G43270 | 40.964 | 166 | 55 | 3 | 22 | 183 | 119 | 245 | 1.66e-23 | 101 |
| MS.gene97631.t1 | AT5G50670 | 38.506 | 174 | 70 | 3 | 15 | 183 | 36 | 177 | 3.19e-23 | 100 |
| MS.gene97631.t1 | AT5G50670 | 38.506 | 174 | 70 | 3 | 15 | 183 | 36 | 177 | 3.19e-23 | 100 |
| MS.gene97631.t1 | AT5G50570 | 38.506 | 174 | 70 | 3 | 15 | 183 | 36 | 177 | 3.19e-23 | 100 |
| MS.gene97631.t1 | AT5G50570 | 38.506 | 174 | 70 | 3 | 15 | 183 | 36 | 177 | 3.19e-23 | 100 |
| MS.gene97631.t1 | AT1G69170 | 49.524 | 105 | 23 | 1 | 77 | 181 | 124 | 198 | 4.92e-23 | 100 |
| MS.gene97631.t1 | AT3G15270 | 44.643 | 112 | 32 | 1 | 75 | 186 | 61 | 142 | 9.48e-23 | 94.7 |
| MS.gene97631.t1 | AT1G02065 | 38.125 | 160 | 52 | 3 | 22 | 180 | 148 | 261 | 2.47e-22 | 97.1 |
| MS.gene97631.t1 | AT1G27370 | 34.857 | 175 | 69 | 3 | 13 | 182 | 117 | 251 | 2.71e-22 | 97.1 |
| MS.gene97631.t1 | AT1G27370 | 44.860 | 107 | 29 | 1 | 76 | 182 | 175 | 251 | 4.60e-22 | 97.1 |
| MS.gene97631.t1 | AT1G27370 | 44.860 | 107 | 29 | 1 | 76 | 182 | 175 | 251 | 4.60e-22 | 97.1 |
| MS.gene97631.t1 | AT1G27370 | 44.860 | 107 | 29 | 1 | 76 | 182 | 175 | 251 | 4.60e-22 | 97.1 |
| MS.gene97631.t1 | AT1G27370 | 44.860 | 107 | 29 | 1 | 76 | 182 | 175 | 251 | 4.60e-22 | 97.1 |
| MS.gene97631.t1 | AT1G27370 | 44.860 | 107 | 29 | 1 | 76 | 182 | 175 | 251 | 4.60e-22 | 97.1 |
| MS.gene97631.t1 | AT1G27370 | 44.860 | 107 | 29 | 1 | 76 | 182 | 175 | 251 | 4.60e-22 | 97.1 |
| MS.gene97631.t1 | AT1G27360 | 45.794 | 107 | 28 | 1 | 76 | 182 | 174 | 250 | 4.97e-22 | 97.1 |
| MS.gene97631.t1 | AT1G27360 | 45.794 | 107 | 28 | 1 | 76 | 182 | 174 | 250 | 4.97e-22 | 97.1 |
| MS.gene97631.t1 | AT1G27360 | 45.794 | 107 | 28 | 1 | 76 | 182 | 174 | 250 | 4.97e-22 | 97.1 |
| MS.gene97631.t1 | AT1G27360 | 45.794 | 107 | 28 | 1 | 76 | 182 | 174 | 250 | 4.97e-22 | 97.1 |
| MS.gene97631.t1 | AT2G47070 | 39.583 | 144 | 51 | 2 | 46 | 183 | 69 | 182 | 7.00e-22 | 98.2 |
| MS.gene97631.t1 | AT1G02065 | 39.175 | 97 | 42 | 2 | 22 | 117 | 148 | 228 | 4.98e-12 | 65.9 |
Find 89 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCTTCTGTTGTTGTTTC+TGG | 0.016193 | 1.1:-40120047 | MS.gene97631:CDS |
| CGCCGCTGATCTTAGGTTTA+GGG | 0.192220 | 1.1:-40118070 | MS.gene97631:intron |
| TTCAAACAAATGCTTCTTCT+TGG | 0.204356 | 1.1:-40116035 | MS.gene97631:CDS |
| TCATTGTAGTTATCCATTAT+TGG | 0.242355 | 1.1:+40116210 | None:intergenic |
| TGGGTGGGGTATTCCCTCTT+TGG | 0.255124 | 1.1:-40117975 | MS.gene97631:CDS |
| TATTCCCTCTTTGGGAAGTT+AGG | 0.256680 | 1.1:-40117966 | MS.gene97631:intron |
| GCTTTCTCCGCCTTTCATTA+TGG | 0.263953 | 1.1:+40116721 | None:intergenic |
| ATTTGTTTGAAGTTGATAAT+TGG | 0.275585 | 1.1:+40116047 | None:intergenic |
| TTCTGTTGTTGTTTCTGGTT+TGG | 0.298755 | 1.1:-40120042 | MS.gene97631:CDS |
| AAAAGTAGGTGAGGAGAGTT+TGG | 0.318831 | 1.1:+40116665 | None:intergenic |
| CCTGAGGCTGTTCCTGATCT+TGG | 0.325219 | 1.1:-40115976 | MS.gene97631:CDS |
| AAACTCTCCTCACCTACTTT+TGG | 0.328374 | 1.1:-40116663 | MS.gene97631:intron |
| TCATCTACCGAGTTTCTTGA+TGG | 0.335549 | 1.1:-40120317 | MS.gene97631:CDS |
| CCACCAACACCAACAGCATT+AGG | 0.337043 | 1.1:+40120221 | None:intergenic |
| TTTCTTGATGGATTAAAGTT+TGG | 0.342712 | 1.1:-40120305 | MS.gene97631:CDS |
| GGGTGGGGTATTCCCTCTTT+GGG | 0.346247 | 1.1:-40117974 | MS.gene97631:CDS |
| TACCAGACATCCTCCAATAA+TGG | 0.353012 | 1.1:-40116223 | MS.gene97631:CDS |
| CTGGCACCACCAATGAGTTC+AGG | 0.359216 | 1.1:-40120371 | None:intergenic |
| GGGAAAACGCGAGGTTAAAA+AGG | 0.385183 | 1.1:+40116686 | None:intergenic |
| CCTAATGCTGTTGGTGTTGG+TGG | 0.385726 | 1.1:-40120221 | MS.gene97631:CDS |
| AACAACTTGTTGAATTTCAA+TGG | 0.386985 | 1.1:-40116102 | MS.gene97631:CDS |
| TCTTCATCATCTTCATCATC+AGG | 0.401033 | 1.1:-40120185 | MS.gene97631:CDS |
| AGCTGCCGCAGGCGTTTAGC+TGG | 0.405674 | 1.1:-40116744 | MS.gene97631:CDS |
| CTTGTCCTCGGTCGTTCTCC+TGG | 0.406792 | 1.1:-40118019 | MS.gene97631:CDS |
| CACAAGGCAAGAACCATTAC+TGG | 0.410261 | 1.1:-40115897 | MS.gene97631:CDS |
| CATGGAAGTTAGTTCCTTGT+AGG | 0.414522 | 1.1:+40116253 | None:intergenic |
| ATCCATTATTGGAGGATGTC+TGG | 0.414648 | 1.1:+40116221 | None:intergenic |
| TTGTTTCTGGTTTGGAGCAA+AGG | 0.417760 | 1.1:-40120034 | MS.gene97631:intron |
| TGTTTCTAGAGTACCATGTT+TGG | 0.425256 | 1.1:+40116148 | None:intergenic |
| TTTGTTTGAAGTTGATAATT+GGG | 0.443503 | 1.1:+40116048 | None:intergenic |
| AGAAACTCGGTAGATGAGTT+AGG | 0.444243 | 1.1:+40120323 | None:intergenic |
| TCTCCTGGTGGAGTTCTCTC+TGG | 0.456019 | 1.1:-40118004 | MS.gene97631:CDS |
| GATGAGTTAGGTTGTGAAGA+GGG | 0.463824 | 1.1:+40120335 | None:intergenic |
| GTTGTTTGAGCACTGGGAAC+CGG | 0.465176 | 1.1:+40116321 | None:intergenic |
| GCTGTTCCTGATCTTGGTCT+CGG | 0.475851 | 1.1:-40115970 | MS.gene97631:CDS |
| CCACGTAGGTGTCAAGTTGA+AGG | 0.484238 | 1.1:-40120140 | MS.gene97631:CDS |
| GGAACCGGCTCGGCTGATCT+CGG | 0.510225 | 1.1:+40116336 | None:intergenic |
| GCGGTTTGACTTCTTGTCCT+CGG | 0.510610 | 1.1:-40118031 | MS.gene97631:CDS |
| AAATTGTGTTGTTTGAGCAC+TGG | 0.511683 | 1.1:+40116314 | None:intergenic |
| CCAAGATCAGGAACAGCCTC+AGG | 0.511774 | 1.1:+40115976 | None:intergenic |
| CAGCTTCCTGAATTCGATCA+AGG | 0.515316 | 1.1:-40116774 | MS.gene97631:CDS |
| AATTCCGAGATCAGCCGAGC+CGG | 0.516665 | 1.1:-40116340 | MS.gene97631:CDS |
| GGTACAAAACCTGAACTCAT+TGG | 0.518582 | 1.1:+40120362 | None:intergenic |
| AATTGTGTTGTTTGAGCACT+GGG | 0.525172 | 1.1:+40116315 | None:intergenic |
| AGGTAATAATGACTTTCTGA+TGG | 0.529130 | 1.1:-40116406 | MS.gene97631:CDS |
| CAAATCAAACCTAATGCTGT+TGG | 0.533702 | 1.1:-40120230 | MS.gene97631:CDS |
| AATAGTTTCTAACCAAAAGT+AGG | 0.535337 | 1.1:+40116651 | None:intergenic |
| AGCAAACAAGAGTATTAAAG+TGG | 0.540068 | 1.1:+40115874 | None:intergenic |
| CTACAAGGAACTAACTTCCA+TGG | 0.540280 | 1.1:-40116252 | MS.gene97631:CDS |
| CTCTTCTGTCAAACCAAACA+TGG | 0.546120 | 1.1:-40116161 | MS.gene97631:CDS |
| AGTAGATCTGAGTGGTGCTA+AGG | 0.546255 | 1.1:-40120111 | MS.gene97631:CDS |
| AGTATTAAAGTGGCCAGTAA+TGG | 0.550747 | 1.1:+40115884 | None:intergenic |
| GTTTAGCTGGCCATAATGAA+AGG | 0.554237 | 1.1:-40116731 | MS.gene97631:CDS |
| TTGAGCACTGGGAACCGGCT+CGG | 0.557428 | 1.1:+40116326 | None:intergenic |
| AAAGTAGGTGAGGAGAGTTT+GGG | 0.559092 | 1.1:+40116666 | None:intergenic |
| AGATGAGTTAGGTTGTGAAG+AGG | 0.562239 | 1.1:+40120334 | None:intergenic |
| CTCAAACAACACAATTTACC+TGG | 0.562586 | 1.1:-40116308 | MS.gene97631:CDS |
| TTCATCATCAGGAATGAAGA+GGG | 0.564365 | 1.1:-40120174 | MS.gene97631:CDS |
| AAACCAGAAACAACAACAGA+AGG | 0.564585 | 1.1:+40120044 | None:intergenic |
| TCGTAGCTGTTTGTCGCCTG+AGG | 0.567116 | 1.1:-40115992 | MS.gene97631:CDS |
| TTAGGTTGTGAAGAGGGAGA+AGG | 0.574494 | 1.1:+40120341 | None:intergenic |
| CTTTAATCCATCAAGAAACT+CGG | 0.578305 | 1.1:+40120310 | None:intergenic |
| TGGTCTCGGTCAAAATTCGC+AGG | 0.578947 | 1.1:-40115956 | MS.gene97631:CDS |
| AAGGAAAACGAAGCTGCCGC+AGG | 0.579767 | 1.1:-40116755 | MS.gene97631:CDS |
| TTGTAGTTATCCATTATTGG+AGG | 0.589950 | 1.1:+40116213 | None:intergenic |
| AAACCTAATGCTGTTGGTGT+TGG | 0.593485 | 1.1:-40120224 | MS.gene97631:CDS |
| CAGACCTAACTTCCCAAAGA+GGG | 0.599305 | 1.1:+40117962 | None:intergenic |
| CTTCATCATCAGGAATGAAG+AGG | 0.604436 | 1.1:-40120175 | MS.gene97631:CDS |
| TTTGTGTCAACAGGTAACAA+TGG | 0.606651 | 1.1:-40116432 | MS.gene97631:intron |
| GCGATTCATAGCGATCTTCG+TGG | 0.611353 | 1.1:-40115934 | MS.gene97631:CDS |
| GTCCTCGGTCGTTCTCCTGG+TGG | 0.612804 | 1.1:-40118016 | MS.gene97631:CDS |
| ATTATTGGAGGATGTCTGGT+AGG | 0.618926 | 1.1:+40116225 | None:intergenic |
| TCAACAGGTAACAATGGCAA+AGG | 0.619380 | 1.1:-40116426 | MS.gene97631:intron |
| TTTCTAACCAAAAGTAGGTG+AGG | 0.620321 | 1.1:+40116656 | None:intergenic |
| AAGTTGTTCATCTCAACACT+TGG | 0.626493 | 1.1:+40116117 | None:intergenic |
| ATTGGAGGATGTCTGGTAGG+AGG | 0.626851 | 1.1:+40116228 | None:intergenic |
| GGTGAGAGCAACGTGTCACA+AGG | 0.630256 | 1.1:-40115913 | MS.gene97631:CDS |
| AAGCCAGAGAGAACTCCACC+AGG | 0.634519 | 1.1:+40118001 | None:intergenic |
| AAACAACTCATCGACAACAT+CGG | 0.635506 | 1.1:-40116283 | MS.gene97631:CDS |
| CCAGACCTAACTTCCCAAAG+AGG | 0.637166 | 1.1:+40117961 | None:intergenic |
| CTCCACCAGGAGAACGACCG+AGG | 0.652863 | 1.1:+40118014 | None:intergenic |
| GGAGAGTTTGGGAAAACGCG+AGG | 0.654140 | 1.1:+40116677 | None:intergenic |
| CCTTCAACTTGACACCTACG+TGG | 0.658663 | 1.1:+40120140 | None:intergenic |
| TATGGCCAGCTAAACGCCTG+CGG | 0.662236 | 1.1:+40116739 | None:intergenic |
| GATGTCTGGTAGGAGGACCA+TGG | 0.664660 | 1.1:+40116235 | None:intergenic |
| TCATCATCAGGAATGAAGAG+GGG | 0.691128 | 1.1:-40120173 | MS.gene97631:CDS |
| TAGCTGGCCATAATGAAAGG+CGG | 0.703070 | 1.1:-40116728 | MS.gene97631:CDS |
| GGGGAAATAATCATCCACGT+AGG | 0.738243 | 1.1:-40120154 | MS.gene97631:CDS |
| GGTTGTAAAGTAGATCTGAG+TGG | 0.784110 | 1.1:-40120119 | MS.gene97631:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATATATTAAATTTAA+AGG | + | chr1.1:40118083-40118102 | None:intergenic | 0.0% |
| !! | AAATATCTTTAAATTTCAAT+TGG | + | chr1.1:40117119-40117138 | None:intergenic | 10.0% |
| !!! | ACAAATAATTTTTTTAATCA+AGG | + | chr1.1:40118125-40118144 | None:intergenic | 10.0% |
| !!! | ATTTTCTATTTCAATTTAAA+AGG | - | chr1.1:40117045-40117064 | MS.gene97631:intron | 10.0% |
| !!! | CTCAATAAAAATAAAATTTT+TGG | + | chr1.1:40117688-40117707 | None:intergenic | 10.0% |
| !!! | TCAAATAAATTTTTTTTTGA+GGG | + | chr1.1:40118020-40118039 | None:intergenic | 10.0% |
| !!! | TTTGTAATTTGTTTAAATAA+AGG | + | chr1.1:40118503-40118522 | None:intergenic | 10.0% |
| !!! | TTTTAATATATATTGTTTGT+TGG | - | chr1.1:40116453-40116472 | MS.gene97631:intron | 10.0% |
| !! | AAAGAAAAAAACACTAAAAA+AGG | + | chr1.1:40116336-40116355 | None:intergenic | 15.0% |
| !! | AATTATAAACAAAAGTAGAA+TGG | + | chr1.1:40116290-40116309 | None:intergenic | 15.0% |
| !! | AATTCTCAAATAAAAAGTTA+GGG | + | chr1.1:40119722-40119741 | None:intergenic | 15.0% |
| !! | ATGATATAAAGTTATTAGTA+AGG | + | chr1.1:40118854-40118873 | None:intergenic | 15.0% |
| !! | ATTTCATTTGAATTTGATAA+TGG | - | chr1.1:40116542-40116561 | MS.gene97631:intron | 15.0% |
| !! | CAAAAATAGCATAAATTAAA+AGG | - | chr1.1:40117780-40117799 | MS.gene97631:intron | 15.0% |
| !! | CTTTGATAAAACATATAAAA+AGG | + | chr1.1:40119664-40119683 | None:intergenic | 15.0% |
| !! | GTAGCTAAAATTATATTATT+GGG | + | chr1.1:40117740-40117759 | None:intergenic | 15.0% |
| !! | TAATTCTCAAATAAAAAGTT+AGG | + | chr1.1:40119723-40119742 | None:intergenic | 15.0% |
| !! | TAGCTAAAATTATATTATTG+GGG | + | chr1.1:40117739-40117758 | None:intergenic | 15.0% |
| !! | TGTTTAATCTCTATAAAATT+AGG | + | chr1.1:40118053-40118072 | None:intergenic | 15.0% |
| !!! | ATAATTTGTAAATGTATGTT+TGG | - | chr1.1:40117082-40117101 | MS.gene97631:intron | 15.0% |
| !!! | ATGTTTCAAATAAATGTTTT+GGG | - | chr1.1:40117415-40117434 | MS.gene97631:intron | 15.0% |
| !!! | GTCAAATAAATTTTTTTTTG+AGG | + | chr1.1:40118021-40118040 | None:intergenic | 15.0% |
| !!! | TAACTTTTTATTTGAGAATT+AGG | - | chr1.1:40119722-40119741 | MS.gene97631:intron | 15.0% |
| !!! | TGTTTTTTTCTTTCTATAAT+GGG | - | chr1.1:40116343-40116362 | MS.gene97631:CDS | 15.0% |
| !!! | TTTATTTTTATTGAGTCATT+AGG | - | chr1.1:40117693-40117712 | MS.gene97631:intron | 15.0% |
| !! | AGACGATAATTTAATACAAA+TGG | - | chr1.1:40117920-40117939 | MS.gene97631:intron | 20.0% |
| !! | AGTCATTAGGTATATTTATA+TGG | - | chr1.1:40117706-40117725 | MS.gene97631:intron | 20.0% |
| !! | ATAAACAAATAACCCTTAAA+AGG | + | chr1.1:40119632-40119651 | None:intergenic | 20.0% |
| !! | GGTAGCTAAAATTATATTAT+TGG | + | chr1.1:40117741-40117760 | None:intergenic | 20.0% |
| !! | TAAAAAAGACAAAATGAGTT+AGG | + | chr1.1:40116404-40116423 | None:intergenic | 20.0% |
| !! | TATTTCAATTTAAAAGGCTT+TGG | - | chr1.1:40117051-40117070 | MS.gene97631:intron | 20.0% |
| !! | TCCAAATTTCAAAGAAAAAA+TGG | - | chr1.1:40116749-40116768 | MS.gene97631:CDS | 20.0% |
| !! | TCTCCATAGATATAAAAATT+TGG | + | chr1.1:40119246-40119265 | None:intergenic | 20.0% |
| !! | TTCCTAGTAAAAATAAATGT+AGG | + | chr1.1:40116646-40116665 | None:intergenic | 20.0% |
| !!! | AATTTTTATATCTATGGAGA+AGG | - | chr1.1:40119246-40119265 | MS.gene97631:intron | 20.0% |
| !!! | ACCATTTTTTCTTTGAAATT+TGG | + | chr1.1:40116753-40116772 | None:intergenic | 20.0% |
| !!! | ATTTGTTTGAAGTTGATAAT+TGG | + | chr1.1:40120203-40120222 | None:intergenic | 20.0% |
| !!! | CATGTTTCAAATAAATGTTT+TGG | - | chr1.1:40117414-40117433 | MS.gene97631:intron | 20.0% |
| !!! | CATTACATACCAAATATTTT+AGG | - | chr1.1:40117279-40117298 | MS.gene97631:intron | 20.0% |
| !!! | GTGTTTTTTTCTTTCTATAA+TGG | - | chr1.1:40116342-40116361 | MS.gene97631:CDS | 20.0% |
| !!! | TCATAAAATTCTGAAATTTC+AGG | + | chr1.1:40116717-40116736 | None:intergenic | 20.0% |
| !!! | TTTGTTTGAAGTTGATAATT+GGG | + | chr1.1:40120202-40120221 | None:intergenic | 20.0% |
| ! | AATAGTTTCTAACCAAAAGT+AGG | + | chr1.1:40119599-40119618 | None:intergenic | 25.0% |
| ! | AGTTGAAGTCCTAAAATATT+TGG | + | chr1.1:40117291-40117310 | None:intergenic | 25.0% |
| ! | ATACTAAAGATGATGCTTAT+GGG | - | chr1.1:40117471-40117490 | MS.gene97631:intron | 25.0% |
| ! | ATAGATTTCTTAGATGTTGT+TGG | - | chr1.1:40116508-40116527 | MS.gene97631:intron | 25.0% |
| ! | ATTAAGAAATTGAAATGCAG+GGG | + | chr1.1:40119161-40119180 | None:intergenic | 25.0% |
| ! | ATTTGTGATTACTTAGGAAA+AGG | - | chr1.1:40117177-40117196 | MS.gene97631:intron | 25.0% |
| ! | CATTAAGAAATTGAAATGCA+GGG | + | chr1.1:40119162-40119181 | None:intergenic | 25.0% |
| ! | GAATATTTGCTTATTGTTGT+CGG | - | chr1.1:40118760-40118779 | MS.gene97631:intron | 25.0% |
| ! | TAGCTTATCTCTATAAGAAT+TGG | + | chr1.1:40119021-40119040 | None:intergenic | 25.0% |
| ! | TATAAGAATTGGTACCTTAT+AGG | + | chr1.1:40119010-40119029 | None:intergenic | 25.0% |
| ! | TATACTAAAGATGATGCTTA+TGG | - | chr1.1:40117470-40117489 | MS.gene97631:intron | 25.0% |
| ! | TCATTAAGAAATTGAAATGC+AGG | + | chr1.1:40119163-40119182 | None:intergenic | 25.0% |
| ! | TCATTGTAGTTATCCATTAT+TGG | + | chr1.1:40120040-40120059 | None:intergenic | 25.0% |
| ! | TCCAATAATAGAAGAACATT+AGG | + | chr1.1:40116583-40116602 | None:intergenic | 25.0% |
| ! | TCCTAATGTTCTTCTATTAT+TGG | - | chr1.1:40116579-40116598 | MS.gene97631:intron | 25.0% |
| ! | TTTGAAAAGGCAAATGTATT+TGG | - | chr1.1:40117250-40117269 | MS.gene97631:intron | 25.0% |
| !! | GAGCCAAATTTTTATATCTA+TGG | - | chr1.1:40119240-40119259 | MS.gene97631:intron | 25.0% |
| !! | TAATAAATAACTTGCCATGT+GGG | + | chr1.1:40116825-40116844 | None:intergenic | 25.0% |
| !! | TGGATAATTTGTGATTACTT+AGG | - | chr1.1:40117171-40117190 | MS.gene97631:intron | 25.0% |
| !! | TTAATAAATAACTTGCCATG+TGG | + | chr1.1:40116826-40116845 | None:intergenic | 25.0% |
| !! | TTTTTAAACTCAAACTGACT+TGG | + | chr1.1:40119304-40119323 | None:intergenic | 25.0% |
| !!! | AACAACTTGTTGAATTTCAA+TGG | - | chr1.1:40120145-40120164 | MS.gene97631:CDS | 25.0% |
| !!! | ACAACATCTTACACTTTTTT+TGG | + | chr1.1:40117146-40117165 | None:intergenic | 25.0% |
| !!! | AGTGTAAGATGTTGTTTTAT+TGG | - | chr1.1:40117151-40117170 | MS.gene97631:intron | 25.0% |
| !!! | CAACATCTTACACTTTTTTT+GGG | + | chr1.1:40117145-40117164 | None:intergenic | 25.0% |
| !!! | CAATGAAGGATTTTAGTTTT+TGG | - | chr1.1:40118802-40118821 | MS.gene97631:intron | 25.0% |
| !!! | TCTTCTTTCTTTGTTGTTTT+AGG | - | chr1.1:40117361-40117380 | MS.gene97631:intron | 25.0% |
| !!! | TCTTTGAAATTTGGAAAGAA+TGG | + | chr1.1:40116744-40116763 | None:intergenic | 25.0% |
| !!! | TGCCTACATTTATTTTTACT+AGG | - | chr1.1:40116641-40116660 | MS.gene97631:intron | 25.0% |
| !!! | TTAGTTTTTGGTGCTTAAAT+GGG | - | chr1.1:40118814-40118833 | MS.gene97631:intron | 25.0% |
| !!! | TTTAGTTTTTGGTGCTTAAA+TGG | - | chr1.1:40118813-40118832 | MS.gene97631:intron | 25.0% |
| !!! | TTTCTTGATGGATTAAAGTT+TGG | - | chr1.1:40115942-40115961 | MS.gene97631:CDS | 25.0% |
| !!! | TTTTCTTTCTATAATGGGTA+TGG | - | chr1.1:40116348-40116367 | MS.gene97631:CDS | 25.0% |
| AATGAGAGGATTACTAGTTA+AGG | - | chr1.1:40119748-40119767 | MS.gene97631:intron | 30.0% | |
| AGGTAATAATGACTTTCTGA+TGG | - | chr1.1:40119841-40119860 | MS.gene97631:intron | 30.0% | |
| AGTAAGAGAGTGAAGTTTAT+TGG | - | chr1.1:40117499-40117518 | MS.gene97631:intron | 30.0% | |
| ATGAGAGGATTACTAGTTAA+GGG | - | chr1.1:40119749-40119768 | MS.gene97631:intron | 30.0% | |
| CTCAGATAAAAACAATTCCA+CGG | + | chr1.1:40119411-40119430 | None:intergenic | 30.0% | |
| CTTATGAAAAAGTTAGACGT+AGG | + | chr1.1:40119191-40119210 | None:intergenic | 30.0% | |
| CTTTAATCCATCAAGAAACT+CGG | + | chr1.1:40115940-40115959 | None:intergenic | 30.0% | |
| TATTCATTCACCATTATACC+TGG | - | chr1.1:40116869-40116888 | MS.gene97631:intron | 30.0% | |
| TCTTAATGAAGGATAAGCAT+GGG | - | chr1.1:40116960-40116979 | MS.gene97631:intron | 30.0% | |
| TGGTCAAAAAATCTACTTTG+AGG | - | chr1.1:40115962-40115981 | MS.gene97631:CDS | 30.0% | |
| TTCAAACAAATGCTTCTTCT+TGG | - | chr1.1:40120212-40120231 | MS.gene97631:CDS | 30.0% | |
| TTGTAGTTATCCATTATTGG+AGG | + | chr1.1:40120037-40120056 | None:intergenic | 30.0% | |
| ! | ACATGCTTTTATGCAAATGA+TGG | - | chr1.1:40116676-40116695 | MS.gene97631:CDS | 30.0% |
| ! | AGCGAACTAAAGTTTTTATC+AGG | - | chr1.1:40117217-40117236 | MS.gene97631:intron | 30.0% |
| ! | ATTCCTTCTGTTACCTTTTA+AGG | - | chr1.1:40119616-40119635 | MS.gene97631:intron | 30.0% |
| ! | TGTGCAAATGAATTTGTTTG+AGG | + | chr1.1:40117762-40117781 | None:intergenic | 30.0% |
| ! | TTCCTTCTGTTACCTTTTAA+GGG | - | chr1.1:40119617-40119636 | MS.gene97631:intron | 30.0% |
| ! | TTTAAAAGGCTTTGGTTGAT+TGG | - | chr1.1:40117059-40117078 | MS.gene97631:intron | 30.0% |
| ! | TTTTGTATATTAAACCTCCG+AGG | - | chr1.1:40117541-40117560 | MS.gene97631:intron | 30.0% |
| !! | AGGAAGTGTAGATTTTGAAA+AGG | - | chr1.1:40117237-40117256 | MS.gene97631:intron | 30.0% |
| !! | GCTTCTTCTTGGTTTTTAAA+GGG | - | chr1.1:40120223-40120242 | MS.gene97631:CDS | 30.0% |
| !! | TGCTTCTTCTTGGTTTTTAA+AGG | - | chr1.1:40120222-40120241 | MS.gene97631:CDS | 30.0% |
| !! | TTTTGTGTTTTTGTGTCAAC+AGG | - | chr1.1:40119806-40119825 | MS.gene97631:intron | 30.0% |
| !!! | AAGCTAGGAAATTTTTTACG+AGG | + | chr1.1:40118157-40118176 | None:intergenic | 30.0% |
| !!! | AGCTAGGAAATTTTTTACGA+GGG | + | chr1.1:40118156-40118175 | None:intergenic | 30.0% |
| AAACAACTCATCGACAACAT+CGG | - | chr1.1:40119964-40119983 | MS.gene97631:intron | 35.0% | |
| AAACCAGAAACAACAACAGA+AGG | + | chr1.1:40116206-40116225 | None:intergenic | 35.0% | |
| AAAGGTTCTTCCAGGTATAA+TGG | + | chr1.1:40116882-40116901 | None:intergenic | 35.0% | |
| AACCCTTAAAAGGTAACAGA+AGG | + | chr1.1:40119622-40119641 | None:intergenic | 35.0% | |
| AAGTTGTTCATCTCAACACT+TGG | + | chr1.1:40120133-40120152 | None:intergenic | 35.0% | |
| ACATCACTTGTGTGACATTA+TGG | - | chr1.1:40118430-40118449 | MS.gene97631:intron | 35.0% | |
| AGATTGACATCAACTTCTCA+AGG | + | chr1.1:40116779-40116798 | None:intergenic | 35.0% | |
| ATATGAGATCCTCTTCTCAA+TGG | - | chr1.1:40118952-40118971 | MS.gene97631:intron | 35.0% | |
| ATGAGTTAGGCAAAACAAGA+AGG | + | chr1.1:40116391-40116410 | None:intergenic | 35.0% | |
| ATTGACATCAACTTCTCAAG+GGG | + | chr1.1:40116777-40116796 | None:intergenic | 35.0% | |
| CAAATCAAACCTAATGCTGT+TGG | - | chr1.1:40116017-40116036 | MS.gene97631:CDS | 35.0% | |
| CGTTGTAGACATATCCATAA+TGG | + | chr1.1:40118981-40119000 | None:intergenic | 35.0% | |
| CTCAAACAACACAATTTACC+TGG | - | chr1.1:40119939-40119958 | MS.gene97631:intron | 35.0% | |
| GATGTAATTCACACATCCTT+TGG | + | chr1.1:40117617-40117636 | None:intergenic | 35.0% | |
| GATTGACATCAACTTCTCAA+GGG | + | chr1.1:40116778-40116797 | None:intergenic | 35.0% | |
| GGATGTGTGAATTACATCTT+AGG | - | chr1.1:40117619-40117638 | MS.gene97631:intron | 35.0% | |
| GTAGAAAAAATGATCCCACA+TGG | - | chr1.1:40116808-40116827 | MS.gene97631:intron | 35.0% | |
| GTCTTAATGAAGGATAAGCA+TGG | - | chr1.1:40116959-40116978 | MS.gene97631:intron | 35.0% | |
| GTTCTTCTATTATTGGAGAC+TGG | - | chr1.1:40116586-40116605 | MS.gene97631:intron | 35.0% | |
| TAAAGCTAAAAGGTTCTTCC+AGG | + | chr1.1:40116890-40116909 | None:intergenic | 35.0% | |
| TATGAGATCCTCTTCTCAAT+GGG | - | chr1.1:40118953-40118972 | MS.gene97631:intron | 35.0% | |
| TCTTCATCATCTTCATCATC+AGG | - | chr1.1:40116062-40116081 | MS.gene97631:CDS | 35.0% | |
| TGAGAATTAGGCTAAATGAG+AGG | - | chr1.1:40119734-40119753 | MS.gene97631:intron | 35.0% | |
| TGTGAATTACATCTTAGGCA+GGG | - | chr1.1:40117624-40117643 | MS.gene97631:intron | 35.0% | |
| TTATGGATATGTCTACAACG+CGG | - | chr1.1:40118981-40119000 | MS.gene97631:intron | 35.0% | |
| TTCATCATCAGGAATGAAGA+GGG | - | chr1.1:40116073-40116092 | MS.gene97631:CDS | 35.0% | |
| TTTCTAACCAAAAGTAGGTG+AGG | + | chr1.1:40119594-40119613 | None:intergenic | 35.0% | |
| TTTGTGTCAACAGGTAACAA+TGG | - | chr1.1:40119815-40119834 | MS.gene97631:intron | 35.0% | |
| !! | AAATTGTGTTGTTTGAGCAC+TGG | + | chr1.1:40119936-40119955 | None:intergenic | 35.0% |
| !! | AATTGTGTTGTTTGAGCACT+GGG | + | chr1.1:40119935-40119954 | None:intergenic | 35.0% |
| !! | GTGTTGTTGTTCTTGTTGTT+CGG | - | chr1.1:40118347-40118366 | MS.gene97631:intron | 35.0% |
| !! | TGTTTCTAGAGTACCATGTT+TGG | + | chr1.1:40120102-40120121 | None:intergenic | 35.0% |
| !! | TTCTGTTGTTGTTTCTGGTT+TGG | - | chr1.1:40116205-40116224 | MS.gene97631:CDS | 35.0% |
| !! | TTTCTATAATGGGTATGGTC+TGG | - | chr1.1:40116353-40116372 | MS.gene97631:CDS | 35.0% |
| !!! | CTAGGAAATTTTTTACGAGG+GGG | + | chr1.1:40118154-40118173 | None:intergenic | 35.0% |
| !!! | CTTAGGTTTAGGGTTTTTTG+TGG | - | chr1.1:40118187-40118206 | MS.gene97631:intron | 35.0% |
| !!! | CTTTTTCATAAGCATCGATG+AGG | - | chr1.1:40119199-40119218 | MS.gene97631:intron | 35.0% |
| !!! | GCTAGGAAATTTTTTACGAG+GGG | + | chr1.1:40118155-40118174 | None:intergenic | 35.0% |
| AAAAGAAGTGGGTAGTGAGA+GGG | - | chr1.1:40116933-40116952 | MS.gene97631:intron | 40.0% | |
| AAAAGTAGGTGAGGAGAGTT+TGG | + | chr1.1:40119585-40119604 | None:intergenic | 40.0% | |
| AAACCTAATGCTGTTGGTGT+TGG | - | chr1.1:40116023-40116042 | MS.gene97631:CDS | 40.0% | |
| AAAGTAGGTGAGGAGAGTTT+GGG | + | chr1.1:40119584-40119603 | None:intergenic | 40.0% | |
| AACCCTAAACCTAAGATCAG+CGG | + | chr1.1:40118182-40118201 | None:intergenic | 40.0% | |
| AGAAACTCGGTAGATGAGTT+AGG | + | chr1.1:40115927-40115946 | None:intergenic | 40.0% | |
| AGAGATAAGCTAACCCCATT+GGG | - | chr1.1:40119029-40119048 | MS.gene97631:intron | 40.0% | |
| ATATTAAACCTCCGAGGCAT+AGG | - | chr1.1:40117547-40117566 | MS.gene97631:intron | 40.0% | |
| ATCCATTATTGGAGGATGTC+TGG | + | chr1.1:40120029-40120048 | None:intergenic | 40.0% | |
| ATGGAACCAACAAAGAGAGA+GGG | - | chr1.1:40118924-40118943 | MS.gene97631:intron | 40.0% | |
| ATTATTGGAGGATGTCTGGT+AGG | + | chr1.1:40120025-40120044 | None:intergenic | 40.0% | |
| CACGAGAAAAACTACAAGAG+GGG | + | chr1.1:40118678-40118697 | None:intergenic | 40.0% | |
| CACTGTGATAGAACTTGTAC+AGG | - | chr1.1:40119444-40119463 | MS.gene97631:intron | 40.0% | |
| CATGGAAGTTAGTTCCTTGT+AGG | + | chr1.1:40119997-40120016 | None:intergenic | 40.0% | |
| CTACAAGGAACTAACTTCCA+TGG | - | chr1.1:40119995-40120014 | MS.gene97631:intron | 40.0% | |
| CTCTTCTGTCAAACCAAACA+TGG | - | chr1.1:40120086-40120105 | MS.gene97631:CDS | 40.0% | |
| CTGTACAAGTTCTATCACAG+TGG | + | chr1.1:40119446-40119465 | None:intergenic | 40.0% | |
| CTTCATCATCAGGAATGAAG+AGG | - | chr1.1:40116072-40116091 | MS.gene97631:CDS | 40.0% | |
| CTTCTCAATGGGTACCATTA+TGG | - | chr1.1:40118964-40118983 | MS.gene97631:intron | 40.0% | |
| GAAAACAACGGACAACACTT+GGG | + | chr1.1:40118615-40118634 | None:intergenic | 40.0% | |
| GCACGAGAAAAACTACAAGA+GGG | + | chr1.1:40118679-40118698 | None:intergenic | 40.0% | |
| GGTTGTAAAGTAGATCTGAG+TGG | - | chr1.1:40116128-40116147 | MS.gene97631:CDS | 40.0% | |
| GTAATTCACACATCCTTTGG+TGG | + | chr1.1:40117614-40117633 | None:intergenic | 40.0% | |
| GTCACATGGCTAAAGCTAAA+AGG | + | chr1.1:40116900-40116919 | None:intergenic | 40.0% | |
| GTCCTACTGGTAAAAGAAGT+GGG | - | chr1.1:40116922-40116941 | MS.gene97631:intron | 40.0% | |
| GTGAATTACATCTTAGGCAG+GGG | - | chr1.1:40117625-40117644 | MS.gene97631:intron | 40.0% | |
| GTGTGAATTACATCTTAGGC+AGG | - | chr1.1:40117623-40117642 | MS.gene97631:intron | 40.0% | |
| GTTTAGCTGGCCATAATGAA+AGG | - | chr1.1:40119516-40119535 | MS.gene97631:intron | 40.0% | |
| TAAAAGAAGTGGGTAGTGAG+AGG | - | chr1.1:40116932-40116951 | MS.gene97631:intron | 40.0% | |
| TAATGGTACCCATTGAGAAG+AGG | + | chr1.1:40118964-40118983 | None:intergenic | 40.0% | |
| TACCAGACATCCTCCAATAA+TGG | - | chr1.1:40120024-40120043 | MS.gene97631:intron | 40.0% | |
| TAGAGATAAGCTAACCCCAT+TGG | - | chr1.1:40119028-40119047 | MS.gene97631:intron | 40.0% | |
| TATGGAACCAACAAAGAGAG+AGG | - | chr1.1:40118923-40118942 | MS.gene97631:intron | 40.0% | |
| TATGGATATGTCTACAACGC+GGG | - | chr1.1:40118982-40119001 | MS.gene97631:intron | 40.0% | |
| TCAACAGGTAACAATGGCAA+AGG | - | chr1.1:40119821-40119840 | MS.gene97631:intron | 40.0% | |
| TCATCATCAGGAATGAAGAG+GGG | - | chr1.1:40116074-40116093 | MS.gene97631:CDS | 40.0% | |
| TCATCTACCGAGTTTCTTGA+TGG | - | chr1.1:40115930-40115949 | MS.gene97631:CDS | 40.0% | |
| TGCACGAGAAAAACTACAAG+AGG | + | chr1.1:40118680-40118699 | None:intergenic | 40.0% | |
| TGTCCTACTGGTAAAAGAAG+TGG | - | chr1.1:40116921-40116940 | MS.gene97631:intron | 40.0% | |
| TTGACATCAACTTCTCAAGG+GGG | + | chr1.1:40116776-40116795 | None:intergenic | 40.0% | |
| ! | AAACTCTCCTCACCTACTTT+TGG | - | chr1.1:40119584-40119603 | MS.gene97631:intron | 40.0% |
| ! | AGATGAGTTAGGTTGTGAAG+AGG | + | chr1.1:40115916-40115935 | None:intergenic | 40.0% |
| ! | CGTTTTCCTTGATCGAATTC+AGG | + | chr1.1:40119482-40119501 | None:intergenic | 40.0% |
| ! | GAGAAGGTCTTATGCATTAG+AGG | - | chr1.1:40119262-40119281 | MS.gene97631:intron | 40.0% |
| ! | GATGAGTTAGGTTGTGAAGA+GGG | + | chr1.1:40115915-40115934 | None:intergenic | 40.0% |
| ! | TACCCACTTCTTTTACCAGT+AGG | + | chr1.1:40116927-40116946 | None:intergenic | 40.0% |
| ! | TATTCCCTCTTTGGGAAGTT+AGG | - | chr1.1:40118281-40118300 | MS.gene97631:intron | 40.0% |
| !! | ACATCGGACTTTTTCCTACA+AGG | - | chr1.1:40119980-40119999 | MS.gene97631:intron | 40.0% |
| !! | GAGAGGGTTAGTCTTAATGA+AGG | - | chr1.1:40116949-40116968 | MS.gene97631:intron | 40.0% |
| !! | TCTCCTTCTGTTGTTGTTTC+TGG | - | chr1.1:40116200-40116219 | MS.gene97631:CDS | 40.0% |
| !! | TGTTGTCCGTTGTTTTCGTT+GGG | - | chr1.1:40118618-40118637 | MS.gene97631:intron | 40.0% |
| !! | TTGTTTCTGGTTTGGAGCAA+AGG | - | chr1.1:40116213-40116232 | MS.gene97631:CDS | 40.0% |
| !!! | AGCATTTTGGGGCTTTTCTT+TGG | - | chr1.1:40118382-40118401 | MS.gene97631:intron | 40.0% |
| !!! | ATAAGCATCGATGAGGCTTT+TGG | - | chr1.1:40119206-40119225 | MS.gene97631:intron | 40.0% |
| !!! | GAGTTCTCTCTGGCTTTTAT+GGG | - | chr1.1:40118253-40118272 | MS.gene97631:intron | 40.0% |
| !!! | GCATTTTGGGGCTTTTCTTT+GGG | - | chr1.1:40118383-40118402 | MS.gene97631:intron | 40.0% |
| !!! | TTAGGGTTTTTTGTGGCTCT+GGG | - | chr1.1:40118194-40118213 | MS.gene97631:intron | 40.0% |
| !!! | TTTAGGGTTTTTTGTGGCTC+TGG | - | chr1.1:40118193-40118212 | MS.gene97631:intron | 40.0% |
| ACCACACTGTTACATAACCG+TGG | - | chr1.1:40119391-40119410 | MS.gene97631:intron | 45.0% | |
| AGGTTAAAAAGGAGCTCGGT+TGG | + | chr1.1:40119553-40119572 | None:intergenic | 45.0% | |
| CAATGCATGAACACCACCAA+AGG | - | chr1.1:40117598-40117617 | MS.gene97631:intron | 45.0% | |
| CACAAGGCAAGAACCATTAC+TGG | - | chr1.1:40120350-40120369 | MS.gene97631:CDS | 45.0% | |
| CAGACCTAACTTCCCAAAGA+GGG | + | chr1.1:40118288-40118307 | None:intergenic | 45.0% | |
| CAGCTTCCTGAATTCGATCA+AGG | - | chr1.1:40119473-40119492 | MS.gene97631:intron | 45.0% | |
| CATGCAAAACAAAGCAGGGA+AGG | + | chr1.1:40118655-40118674 | None:intergenic | 45.0% | |
| CCCAAAATGCTTGCAACAAC+GGG | + | chr1.1:40118373-40118392 | None:intergenic | 45.0% | |
| CCCCAAAATGCTTGCAACAA+CGG | + | chr1.1:40118374-40118393 | None:intergenic | 45.0% | |
| CGAAAACAACGGACAACACT+TGG | + | chr1.1:40118616-40118635 | None:intergenic | 45.0% | |
| CGAATCCTTTCAATGGGATG+GGG | - | chr1.1:40117648-40117667 | MS.gene97631:intron | 45.0% | |
| GAAAACCCGTTGTCACATTG+TGG | - | chr1.1:40118552-40118571 | MS.gene97631:intron | 45.0% | |
| GAGATAAGCTAACCCCATTG+GGG | - | chr1.1:40119030-40119049 | MS.gene97631:intron | 45.0% | |
| GCGAATCCTTTCAATGGGAT+GGG | - | chr1.1:40117647-40117666 | MS.gene97631:intron | 45.0% | |
| GCTAACCACAATGTGACAAC+GGG | + | chr1.1:40118560-40118579 | None:intergenic | 45.0% | |
| GCTTTCTCCGCCTTTCATTA+TGG | + | chr1.1:40119529-40119548 | None:intergenic | 45.0% | |
| GGCTAACCACAATGTGACAA+CGG | + | chr1.1:40118561-40118580 | None:intergenic | 45.0% | |
| GGGAAAACGCGAGGTTAAAA+AGG | + | chr1.1:40119564-40119583 | None:intergenic | 45.0% | |
| GGGGAAATAATCATCCACGT+AGG | - | chr1.1:40116093-40116112 | MS.gene97631:CDS | 45.0% | |
| GGTTAAAAAGGAGCTCGGTT+GGG | + | chr1.1:40119552-40119571 | None:intergenic | 45.0% | |
| GTCACGTGACACACTATGAT+TGG | + | chr1.1:40118478-40118497 | None:intergenic | 45.0% | |
| GTGTCAATGCCATGTGACAT+TGG | + | chr1.1:40118582-40118601 | None:intergenic | 45.0% | |
| GTTAAAAAGGAGCTCGGTTG+GGG | + | chr1.1:40119551-40119570 | None:intergenic | 45.0% | |
| TAAGCACCCTCTCTCTTTGT+TGG | + | chr1.1:40118933-40118952 | None:intergenic | 45.0% | |
| TACCAGTAGGACATGTCACA+TGG | + | chr1.1:40116914-40116933 | None:intergenic | 45.0% | |
| TAGCTGGCCATAATGAAAGG+CGG | - | chr1.1:40119519-40119538 | MS.gene97631:intron | 45.0% | |
| TCCACGGTTATGTAACAGTG+TGG | + | chr1.1:40119395-40119414 | None:intergenic | 45.0% | |
| TCCTTCATTGTCGATGCTCT+TGG | + | chr1.1:40118792-40118811 | None:intergenic | 45.0% | |
| ! | AGTAGATCTGAGTGGTGCTA+AGG | - | chr1.1:40116136-40116155 | MS.gene97631:CDS | 45.0% |
| ! | CCCGTTGTTGCAAGCATTTT+GGG | - | chr1.1:40118370-40118389 | MS.gene97631:intron | 45.0% |
| ! | CCGTTGTTGCAAGCATTTTG+GGG | - | chr1.1:40118371-40118390 | MS.gene97631:intron | 45.0% |
| ! | CTCTTTGGGAAGTTAGGTCT+GGG | - | chr1.1:40118287-40118306 | MS.gene97631:intron | 45.0% |
| ! | TGTGGTTAGCCAATGTCACA+TGG | - | chr1.1:40118570-40118589 | MS.gene97631:intron | 45.0% |
| ! | TTAGGTTGTGAAGAGGGAGA+AGG | + | chr1.1:40115909-40115928 | None:intergenic | 45.0% |
| ! | TTTTGACCGAGACCAAGATC+AGG | + | chr1.1:40120286-40120305 | None:intergenic | 45.0% |
| !! | AACTCAAACTGACTTGGCTC+TGG | + | chr1.1:40119298-40119317 | None:intergenic | 45.0% |
| !! | ACCAAGAGCATCGACAATGA+AGG | - | chr1.1:40118788-40118807 | MS.gene97631:intron | 45.0% |
| !! | GACTTGGCTCTGGTTCAAAT+TGG | + | chr1.1:40119288-40119307 | None:intergenic | 45.0% |
| !! | GTGTTGTCCGTTGTTTTCGT+TGG | - | chr1.1:40118617-40118636 | MS.gene97631:intron | 45.0% |
| !! | TGTCGATGAGTTGTTTTGCC+AGG | + | chr1.1:40119960-40119979 | None:intergenic | 45.0% |
| !!! | GGAGTTCTCTCTGGCTTTTA+TGG | - | chr1.1:40118252-40118271 | MS.gene97631:intron | 45.0% |
| !!! | TCTCTCTGGCTTTTATGGGT+GGG | - | chr1.1:40118257-40118276 | MS.gene97631:intron | 45.0% |
| !!! | TTCTCTCTGGCTTTTATGGG+TGG | - | chr1.1:40118256-40118275 | MS.gene97631:intron | 45.0% |
| !! | TTAAAAAAATTATTTGTATT+TGG | - | chr1.1:40118128-40118147 | MS.gene97631:intron | 5.0% |
| !!! | TATTTTAATATTCAATTATA+TGG | - | chr1.1:40118905-40118924 | MS.gene97631:intron | 5.0% |
| !!! | TCAATAAAAATAAAATTTTT+GGG | + | chr1.1:40117687-40117706 | None:intergenic | 5.0% |
| AGCCATGTGACATGTCCTAC+TGG | - | chr1.1:40116909-40116928 | MS.gene97631:intron | 50.0% | |
| AGCTACCCCATCCCATTGAA+AGG | + | chr1.1:40117656-40117675 | None:intergenic | 50.0% | |
| AGCTCTTAGACCATCCCCAA+TGG | + | chr1.1:40119047-40119066 | None:intergenic | 50.0% | |
| ATTGGAGGATGTCTGGTAGG+AGG | + | chr1.1:40120022-40120041 | None:intergenic | 50.0% | |
| CAGGGGCGAATCCTTTCAAT+GGG | - | chr1.1:40117642-40117661 | MS.gene97631:intron | 50.0% | |
| CATGTGACCTGCTACACTGT+TGG | + | chr1.1:40116244-40116263 | None:intergenic | 50.0% | |
| CCACCAACACCAACAGCATT+AGG | + | chr1.1:40116029-40116048 | None:intergenic | 50.0% | |
| CCAGACCTAACTTCCCAAAG+AGG | + | chr1.1:40118289-40118308 | None:intergenic | 50.0% | |
| CCTTCAACTTGACACCTACG+TGG | + | chr1.1:40116110-40116129 | None:intergenic | 50.0% | |
| CGCCGCTGATCTTAGGTTTA+GGG | - | chr1.1:40118177-40118196 | MS.gene97631:intron | 50.0% | |
| CGCGAGGTTAAAAAGGAGCT+CGG | + | chr1.1:40119557-40119576 | None:intergenic | 50.0% | |
| CTACAACGCGGGTACCTATA+AGG | - | chr1.1:40118993-40119012 | MS.gene97631:intron | 50.0% | |
| CTCTTAGACCATCCCCAATG+GGG | + | chr1.1:40119045-40119064 | None:intergenic | 50.0% | |
| GCGATGCCCAACGAAAACAA+CGG | + | chr1.1:40118627-40118646 | None:intergenic | 50.0% | |
| GCGATTCATAGCGATCTTCG+TGG | - | chr1.1:40120313-40120332 | MS.gene97631:CDS | 50.0% | |
| GCTCTTAGACCATCCCCAAT+GGG | + | chr1.1:40119046-40119065 | None:intergenic | 50.0% | |
| GCTGTTCCTGATCTTGGTCT+CGG | - | chr1.1:40120277-40120296 | MS.gene97631:CDS | 50.0% | |
| GGCGAATCCTTTCAATGGGA+TGG | - | chr1.1:40117646-40117665 | MS.gene97631:intron | 50.0% | |
| GGGGCATGCAAAACAAAGCA+GGG | + | chr1.1:40118659-40118678 | None:intergenic | 50.0% | |
| GTTAGGTCTGGGTTCTTTGC+CGG | - | chr1.1:40118298-40118317 | MS.gene97631:intron | 50.0% | |
| TAAGCTAACCCCATTGGGGA+TGG | - | chr1.1:40119034-40119053 | MS.gene97631:intron | 50.0% | |
| TCAATGGGATGGGGTAGCTT+TGG | - | chr1.1:40117657-40117676 | MS.gene97631:intron | 50.0% | |
| TCGCCGCTGATCTTAGGTTT+AGG | - | chr1.1:40118176-40118195 | MS.gene97631:intron | 50.0% | |
| TGGTCTCGGTCAAAATTCGC+AGG | - | chr1.1:40120291-40120310 | MS.gene97631:CDS | 50.0% | |
| TTTGGGGGTCGTGTTTGCTT+GGG | - | chr1.1:40118323-40118342 | MS.gene97631:intron | 50.0% | |
| ! | AGGGGCATGCAAAACAAAGC+AGG | + | chr1.1:40118660-40118679 | None:intergenic | 50.0% |
| ! | CCTCTTTGGGAAGTTAGGTC+TGG | - | chr1.1:40118286-40118305 | MS.gene97631:intron | 50.0% |
| ! | GCCCGTTGTTGCAAGCATTT+TGG | - | chr1.1:40118369-40118388 | MS.gene97631:intron | 50.0% |
| ! | GCGGTTTGACTTCTTGTCCT+CGG | - | chr1.1:40118216-40118235 | MS.gene97631:intron | 50.0% |
| ! | GGTTTTGCCAACAGTGTAGC+AGG | - | chr1.1:40116234-40116253 | MS.gene97631:CDS | 50.0% |
| !! | CCACGTAGGTGTCAAGTTGA+AGG | - | chr1.1:40116107-40116126 | MS.gene97631:CDS | 50.0% |
| !! | CCTAATGCTGTTGGTGTTGG+TGG | - | chr1.1:40116026-40116045 | MS.gene97631:CDS | 50.0% |
| !! | GTTGTTTGAGCACTGGGAAC+CGG | + | chr1.1:40119929-40119948 | None:intergenic | 50.0% |
| !!! | CTCTCTGGCTTTTATGGGTG+GGG | - | chr1.1:40118258-40118277 | MS.gene97631:intron | 50.0% |
| AAGCCAGAGAGAACTCCACC+AGG | + | chr1.1:40118249-40118268 | None:intergenic | 55.0% | |
| AAGGAAAACGAAGCTGCCGC+AGG | - | chr1.1:40119492-40119511 | MS.gene97631:intron | 55.0% | |
| AATTCCGAGATCAGCCGAGC+CGG | - | chr1.1:40119907-40119926 | MS.gene97631:intron | 55.0% | |
| CAAGCAAACACGACCCCCAA+AGG | + | chr1.1:40118324-40118343 | None:intergenic | 55.0% | |
| CAGCAAAACCTATGCCTCGG+AGG | + | chr1.1:40117558-40117577 | None:intergenic | 55.0% | |
| CCAAGATCAGGAACAGCCTC+AGG | + | chr1.1:40120274-40120293 | None:intergenic | 55.0% | |
| CCTGAGGCTGTTCCTGATCT+TGG | - | chr1.1:40120271-40120290 | MS.gene97631:CDS | 55.0% | |
| CGCCAGCAAAACCTATGCCT+CGG | + | chr1.1:40117561-40117580 | None:intergenic | 55.0% | |
| CTAAGATCAGCGGCGAAGCT+AGG | + | chr1.1:40118172-40118191 | None:intergenic | 55.0% | |
| CTAGCTTCGCCGCTGATCTT+AGG | - | chr1.1:40118170-40118189 | MS.gene97631:intron | 55.0% | |
| GATGTCTGGTAGGAGGACCA+TGG | + | chr1.1:40120015-40120034 | None:intergenic | 55.0% | |
| GCAGGGGCGAATCCTTTCAA+TGG | - | chr1.1:40117641-40117660 | MS.gene97631:intron | 55.0% | |
| GGAGAGTTTGGGAAAACGCG+AGG | + | chr1.1:40119573-40119592 | None:intergenic | 55.0% | |
| GGTGAGAGCAACGTGTCACA+AGG | - | chr1.1:40120334-40120353 | MS.gene97631:CDS | 55.0% | |
| TATGGCCAGCTAAACGCCTG+CGG | + | chr1.1:40119511-40119530 | None:intergenic | 55.0% | |
| TCGTAGCTGTTTGTCGCCTG+AGG | - | chr1.1:40120255-40120274 | MS.gene97631:CDS | 55.0% | |
| TCTCCTGGTGGAGTTCTCTC+TGG | - | chr1.1:40118243-40118262 | MS.gene97631:intron | 55.0% | |
| TGGGTTCTTTGCCGGCCTTT+GGG | - | chr1.1:40118306-40118325 | MS.gene97631:intron | 55.0% | |
| ! | CTCCGAGGCATAGGTTTTGC+TGG | - | chr1.1:40117556-40117575 | MS.gene97631:intron | 55.0% |
| ! | CTTTGGGGGTCGTGTTTGCT+TGG | - | chr1.1:40118322-40118341 | MS.gene97631:intron | 55.0% |
| ! | GGGTGGGGTATTCCCTCTTT+GGG | - | chr1.1:40118273-40118292 | MS.gene97631:intron | 55.0% |
| ! | TGGGTGGGGTATTCCCTCTT+TGG | - | chr1.1:40118272-40118291 | MS.gene97631:intron | 55.0% |
| !!! | GGGTTTTTTGTGGCTCTGGG+CGG | - | chr1.1:40118197-40118216 | MS.gene97631:intron | 55.0% |
| CAAACACGACCCCCAAAGGC+CGG | + | chr1.1:40118320-40118339 | None:intergenic | 60.0% | |
| CTGGGTTCTTTGCCGGCCTT+TGG | - | chr1.1:40118305-40118324 | MS.gene97631:intron | 60.0% | |
| CTTGTCCTCGGTCGTTCTCC+TGG | - | chr1.1:40118228-40118247 | MS.gene97631:intron | 60.0% | |
| GGGTTCTTTGCCGGCCTTTG+GGG | - | chr1.1:40118307-40118326 | MS.gene97631:intron | 60.0% | |
| GGTTCTTTGCCGGCCTTTGG+GGG | - | chr1.1:40118308-40118327 | MS.gene97631:intron | 60.0% | |
| !! | TTGAGCACTGGGAACCGGCT+CGG | + | chr1.1:40119924-40119943 | None:intergenic | 60.0% |
| AGCTGCCGCAGGCGTTTAGC+TGG | - | chr1.1:40119503-40119522 | MS.gene97631:intron | 65.0% | |
| CTCCACCAGGAGAACGACCG+AGG | + | chr1.1:40118236-40118255 | None:intergenic | 65.0% | |
| GTCCTCGGTCGTTCTCCTGG+TGG | - | chr1.1:40118231-40118250 | MS.gene97631:intron | 65.0% | |
| !! | GGAACCGGCTCGGCTGATCT+CGG | + | chr1.1:40119914-40119933 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 40115888 | 40120381 | 40115888 | ID=MS.gene97631 |
| chr1.1 | mRNA | 40115888 | 40120381 | 40115888 | ID=MS.gene97631.t1;Parent=MS.gene97631 |
| chr1.1 | exon | 40120035 | 40120381 | 40120035 | ID=MS.gene97631.t1.exon1;Parent=MS.gene97631.t1 |
| chr1.1 | CDS | 40120035 | 40120381 | 40120035 | ID=cds.MS.gene97631.t1;Parent=MS.gene97631.t1 |
| chr1.1 | exon | 40117967 | 40118077 | 40117967 | ID=MS.gene97631.t1.exon2;Parent=MS.gene97631.t1 |
| chr1.1 | CDS | 40117967 | 40118077 | 40117967 | ID=cds.MS.gene97631.t1;Parent=MS.gene97631.t1 |
| chr1.1 | exon | 40116664 | 40116803 | 40116664 | ID=MS.gene97631.t1.exon3;Parent=MS.gene97631.t1 |
| chr1.1 | CDS | 40116664 | 40116803 | 40116664 | ID=cds.MS.gene97631.t1;Parent=MS.gene97631.t1 |
| chr1.1 | exon | 40115888 | 40116441 | 40115888 | ID=MS.gene97631.t1.exon4;Parent=MS.gene97631.t1 |
| chr1.1 | CDS | 40115888 | 40116441 | 40115888 | ID=cds.MS.gene97631.t1;Parent=MS.gene97631.t1 |
| Gene Sequence |
| Protein sequence |
