AlfalfaGEDB | MS.gene97765

M. sativa cultivar XinJiangDaYe / MS.gene97765

KEGG: K08150
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97765.t1	XP_003621003.1	99.2	500	4	0	1	500	1	500	1.60E-276	961.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97765.t1	Q8VZR6	73.0	507	126	2	5	500	3	509	7.1e-209	728.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97765.t1	A2Q2S7	99.2	500	4	0	1	500	1	500	1.1e-276	961.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene97765	MS.gene033323	PPI
MS.gene97765	MS.gene48297	PPI
MS.gene97765	MS.gene059965	PPI
MS.gene97765	MS.gene011362	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97765.t1	MTR_7g005910	99.200	500	4	0	1	500	1	500	0.0	1003
MS.gene97765.t1	MTR_1g116660	78.138	494	102	2	7	494	9	502	0.0	774
MS.gene97765.t1	MTR_3g084110	73.577	492	129	1	9	499	4	495	0.0	760
MS.gene97765.t1	MTR_1g116650	75.198	504	104	3	1	500	47	533	0.0	747
MS.gene97765.t1	MTR_5g077580	46.250	560	194	6	28	492	21	568	4.47e-166	481
MS.gene97765.t1	MTR_2g049020	58.501	347	141	1	28	371	21	367	7.35e-139	412
MS.gene97765.t1	MTR_2g049020	55.385	130	53	1	376	500	450	579	1.59e-38	148
MS.gene97765.t1	MTR_2g048720	57.303	356	144	1	21	368	6	361	4.80e-130	389
MS.gene97765.t1	MTR_2g048720	56.667	120	50	1	363	482	436	553	4.54e-30	124
MS.gene97765.t1	MTR_2g026160	57.602	342	139	1	29	364	23	364	1.94e-125	378

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97765.t1	AT2G43330	72.798	511	124	4	1	500	3	509	0.0	727
MS.gene97765.t1	AT1G30220	60.000	345	135	1	28	369	23	367	6.71e-129	387
MS.gene97765.t1	AT1G30220	52.817	142	57	3	364	500	443	579	2.93e-39	150
MS.gene97765.t1	AT2G35740	52.557	352	157	2	31	374	24	373	3.58e-123	372
MS.gene97765.t1	AT2G35740	51.327	113	53	1	364	476	446	556	6.65e-30	123
MS.gene97765.t1	AT4G16480	55.043	347	150	1	28	368	22	368	1.71e-118	360
MS.gene97765.t1	AT4G16480	53.097	113	51	1	364	476	447	557	3.46e-30	124
MS.gene97765.t1	AT4G16480	55.043	347	150	1	28	368	22	368	1.71e-118	360
MS.gene97765.t1	AT4G16480	53.097	113	51	1	364	476	447	557	3.46e-30	124
MS.gene97765.t1	AT4G16480	55.043	347	150	1	28	368	22	368	1.71e-118	360

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Find 144 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAGCCCTTTCTAGTT+TGG	0.272793	7.3:-81884403	MS.gene97765:CDS
AAATTACTGTTTCTAACTTG+AGG	0.525803	7.3:+81888880	None:intergenic
AACGCCATCGGAACAATTCT+TGG	0.356292	7.3:-81884456	MS.gene97765:CDS
AACGTCAATCCTTGAGTCTC+TGG	0.402613	7.3:+81884039	None:intergenic
AAGAAAGACATCTTACGATC+AGG	0.501284	7.3:+81889106	None:intergenic
AAGCATCCATCGCCATGTCC+CGG	0.467554	7.3:+81887074	None:intergenic
AATAGCCATCTTGGAGATTC+AGG	0.236761	7.3:+81887000	None:intergenic
AATATGGAAGGAGAGAGCCT+GGG	0.639317	7.3:-81884001	MS.gene97765:CDS
AATCGCGTCCTTGATAATGT+TGG	0.605908	7.3:-81884373	MS.gene97765:CDS
AATGAACCTCTGATTTCCGA+GGG	0.654989	7.3:+81887587	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTATTGAAGAGAAACTAG+GGG	-	chr7.3:81887940-81887959	MS.gene97765:intron	30.0%
AAGAAACAAGTTTCATTCGA+AGG	-	chr7.3:81886964-81886983	MS.gene97765:intron	30.0%
AAGTACTTATGGAAGTAGAT+AGG	-	chr7.3:81885192-81885211	MS.gene97765:intron	30.0%
ACCTTTATAAATAGCCATCT+TGG	+	chr7.3:81886129-81886148	None:intergenic	30.0%
AGTTAGAGCATAGTATAGTA+TGG	+	chr7.3:81884280-81884299	None:intergenic	30.0%
ATATATCCTGAAGAATATCG+AGG	-	chr7.3:81888898-81888917	MS.gene97765:CDS	30.0%
ATGTTATAAGCTCTCAGAAA+TGG	-	chr7.3:81884686-81884705	MS.gene97765:intron	30.0%
ATTTACCTTATTGACAACAC+AGG	-	chr7.3:81888685-81888704	MS.gene97765:intron	30.0%
CATAACTTGATCGCAATTAA+AGG	-	chr7.3:81886478-81886497	MS.gene97765:intron	30.0%
GAAAACAAGGTTAACAAGAT+AGG	+	chr7.3:81885600-81885619	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	81883951	81889188	81883951	ID=MS.gene97765
chr7.3	mRNA	81883951	81889188	81883951	ID=MS.gene97765.t1;Parent=MS.gene97765
chr7.3	exon	81889035	81889188	81889035	ID=MS.gene97765.t1.exon1;Parent=MS.gene97765.t1
chr7.3	CDS	81889035	81889188	81889035	ID=cds.MS.gene97765.t1;Parent=MS.gene97765.t1
chr7.3	exon	81888873	81888943	81888873	ID=MS.gene97765.t1.exon2;Parent=MS.gene97765.t1
chr7.3	CDS	81888873	81888943	81888873	ID=cds.MS.gene97765.t1;Parent=MS.gene97765.t1
chr7.3	exon	81887514	81887849	81887514	ID=MS.gene97765.t1.exon3;Parent=MS.gene97765.t1
chr7.3	CDS	81887514	81887849	81887514	ID=cds.MS.gene97765.t1;Parent=MS.gene97765.t1
chr7.3	exon	81886993	81887100	81886993	ID=MS.gene97765.t1.exon4;Parent=MS.gene97765.t1
chr7.3	CDS	81886993	81887100	81886993	ID=cds.MS.gene97765.t1;Parent=MS.gene97765.t1
chr7.3	exon	81886704	81886889	81886704	ID=MS.gene97765.t1.exon5;Parent=MS.gene97765.t1
chr7.3	CDS	81886704	81886889	81886704	ID=cds.MS.gene97765.t1;Parent=MS.gene97765.t1
chr7.3	exon	81883951	81884598	81883951	ID=MS.gene97765.t1.exon6;Parent=MS.gene97765.t1
chr7.3	CDS	81883951	81884598	81883951	ID=cds.MS.gene97765.t1;Parent=MS.gene97765.t1

Gene Sequence

>MS.gene97765

ATGACGGTTCCGATAGCTATGCAGTCAACACCGGGAAGTTCAGGTTACTTAGATATGCATCCTGATCGTAAGATGTCTTTCTTTAAGAATCCTTACATTCTCGGCCTCGCCGCTGTCGCTGGTATCGGTGGTCTTCTCTTCGGCTACGACACTGGTTAGTTGCTCACTATTATTCTCATTTTATTTATTATTTCATCCTAATAAATAATTCAAACATAACTTCAATTCTTCTTCTTCACTCACAGGTGTGATATCAGGAGCTCTTTTGTACATTAAAGATGATTTTCCTCAAGTTAGAAACAGTAATTTTCTGCAGGTACCTACCTCCATACTATACTATGCTCTAACTAACTTCACCTTATTATTCTGTATAAGCCATCGGCCTTTTTTTTTTATTTTAAATTATCTACTCACATAACTTATGAAAATAGCTTATGACATTGTTCATAACTTGTTTTCTGCATATTTTCATTACTTCTTTCTTATCAAAACACCTAATACCCTATACAACAACCAATTTAACTTACTATTATCTTATATACTACAAATACCTTATACATAATAACTACTTCTTCTATAAGCTGCAAATAAGTTGTTTATCCAAACAGTGAAGTGATAATTACAAAATCAAACTCTTTTCATGTACTATCTATGCTATAAGCTGTTTTATTTATAAGCTACCTTTGAAAACTTATGAAAATAAGATAAAACAACTTTACTTATGGACGGACGGACATGTTATAAGCTCTCAGAAATGGTTTTAAACGTACGTGCTTAGTAGACAAGCTTAAATAAACCAATCCATAAACAACTTTTAATTAATAACCTATAACACAAACACCAATCATATAATTGCTTATGTACAAGTTATTTACGTAAAAAAAATAAAGTCAAACTATTTTCATATAAGTTATAACTTGTTTTTATAAGCTATTATGGGCCTGTTGAATTCACTTATTATTTGAGCTTATCTACTATCATAAGTTTTGTTAAACTGTTTAGACAAATTTATGAAAACAACTTATGACATTCTTCATAACCTGTTTTCACCTTAATTTCATAACTTCTTTAAGATAGCTTATGTGAGAACAATTTAACTTTATTTTATCTTCTGTTAGTACAAATAACTTATACATTGTGCGGAAATAAGTTGTTTATTCAAACAGGGCCTAGGTAGAGCTTATGCAAATAAGTGTTAAAAGAGTTTGTGGACATTCCATAAGCTCACCAACCAGTCTCACAAGTACTTATGGAAGTAGATAGGCTCCAATAAGCCAATATAAATAGCCTCTACATCGTTCCTTTTTCTGACACTCACTTTTGTGTCTCTCAATTTCAGGAAACAATTGTTAGCATGGCAATTGCTGGGGCAATTGTTGGTGCGGCATTTGGTGGTTGGCTTAATGACGCATATGGAAGAAAGAAGGCCACACTCTTAGCTGATGTTATCTTTATTCTCGGAGCAATTCTCATGGCTGCTGCACCTGATCCTTATGTTCTCATAGTAGGACGTCTTCTCGTTGGTTTGGGTGTTGGCATAGCTTCTGTTACTGCTCCTGTCTATATTGCAGAAGTTGCACCCTCGGAAATCAGAGGTTCATTGGTCAGCACTAATGTCCTCATGATCACCGGCGGACAGTTCGTTTCCTATCTTGTTAACCTTGTTTTCACCCAGGTTAGTGTGTTAGTCTTTCATGCTTTTCTTGTGTGTGGGATTGGATGGATACGTGTGCTTTTTCTATCAGCGTGTTTAATTTTGGATTTTGTTTTGGTTTTGTTTCACTGATTGCATTTCATATTCTTAGGGGTGGTTTACTTCTGCTCTTTCTACTTCTACCGATAAAATAAAACATTAGATAAGACATTATGAAAGTTTTTAATATAGATTAAATATTTTTGGAAATTTCTGAAAAATTTCAAAACATTGTGTTTGGTCTCTCTAGTTAGCTTCCATCTTCTCTATATCACAATTAAAAAAAAAAAAAAAATCAACAACCCAATGTCTTTTGATTTCAACCATCCGCACACAAAGTAAAAGTTGGAAATTGAAAATGTTGATAAAAAGTAAACGGGTCTTTACTTGAGCAGGTCCCCGGGACATGGCGATGGATGCTTGGTGTTTCAGGTGTGCCTGCACTTATCCAGTTCGTTTGCATGCTCTTCCTCCCTGAATCTCCAAGATGGCTATTTATAAAGGTACAAATTTGCTCTTCTCAACAATTGTGTCCCAGATGTACATGTACTGCAGAAGTAACTTGTTTATAATGCCATTTTAAAATTTTACTATCTTGGTGTGCAGAATAGGAAAAATGAAGCGGTCGATGTAATTTCTAAGATCTATGACTTGTCTCGCTTAGAGGATGAAATTGATTTCCTAACTGCTCAATCTGAACAAGAGCGCCAAAGAAGGAGTACTATCAAATTCTGGCATGTTTTCAGATCAAAAGAAACCAGACTGGCGTTCCTTGTTGGAGGAGGACTTCTGGTAATAAAATAAAATGTTTACAAAGAAACTCTTTTTGCAGAACATAACTTGATCGCAATTAAAGGATCTTTATGAATGCTCTTTGCTGTCAATAGGCTAACTAGAATATTCTACTTTATTAAAACATATGTATATATGTGAGTCATGCTAACTAGAATATTCTACTTTATTAAAACATATGTATATATGTGAGTCATTGCAGAGTCCGTATTCTATATTCCACTGGTGAAAAATCATAGGCTTGTTCTAGACATGTTGGATTGCTCTAAAACAGAAGAGTACAATTGAAATCACCAAGCTAAAGAAGAACGGAAGAACGGCTTGATTACATCATTATAAATGATTGCATATATAATAAGCTCTATAAAATATACTTTAGGGTCTGTTTTATGTTATTGAGAATTTAGCACTGAGTCTAATGGTTATAGCTTTAAAATTGAAACCACAATCCTGGAAACATTTCATTTTAGGAGCTGAAATTGTTTTGATAGAAAATGTAGCATTTATTATGAAAAATAAGATATATTGAAGAAACAAGTTTCATTCGAAGGCTAATGTAATATATGTTACTCCTATGTATATTTATTACCGTGCAGTTGTAAGACCTTGAATGCTATACGAGACAAAATGTTGGAAAACAAAGAGTCAATAAGAAAGAATATTCATAGTCATAAAGATGAGAATGTTAAAATTCATAAGTGATCATACAAGGAAGATTAAGATTAGTAATAAAACTATGAGTAAATTACACTTCCCTCCCCTCAAAGATACTTGAATTACACTCCCCTCCCCTCCCCTCTTATGTTAAAATATACACTTTTCTCCCTTGAAAAGTAAAATTTATATTCTCCTATCATATAAGATGCTTGAATTACAAGCCCCTCCCTTAATAATTAAATATGCACTACACTTTAATCTATTTCAGCATAAATAAATATTTTTATGATATATATTAATTTTGAGCCACCATTTAAGAAAAATAAATTAATTTCTTTATAATTTAAATGTCATTGATAATTAAATTTAAATATTTTTCTACTAATTTTATAATTTAGAGTATAAAATTAATTTTTATATAATGATACTTTATTGTCTTTAGTAATATTTCGCATACTTTAATTTTATTTTGGGTAGTTTCCTATTTTATAATAGGGTTTAAAACTATATGTTAATGAAATTGTGAATAAAAAATAGCGAAAAATATGTATTCAAATTTTGAATATATTAAAATAGATCAGCAATACCATTTTTTTGAAGTGTGTTAGATTATTATTTGTTTGCTAGACTATTAGAAAATTAAAAAAAAAAATATTGAGGGAGTAAAGTGTAGATTTTAACATAAGAGGGGAGGGGGATGTAATTCAAGCTTCTCTTAGAGGAGGGGAGTGAAATATTTTCTAATATGTTTTGAATAAGAGGGGAGGAGAGTGTATATTTTAACATAAGAGGGGAGGGGAGTGAAATTCAAGCATCTTTGAGGGGAGGGGAGTGTAATTTACTCTAAAACTATTGAAGAGAAACTAGGGGTAACTCTGTTTAAAGAATAAGATGGTAGAATATCATTTTAAGTGGTTTGAATATTTCCGGAAAAGACTCGGAGAAGTATCAGTGAAGAGAATCGATCAGATGGAGTATAGTTTAATAGCTAAAGGTAGAAGGAGACCAAGAAAAGTTGTTGGTCAAATCATTAAGCGAGATTTATAGATAAATGGTTTATCTTTAAAGTTGATGAATAGTAGGACTTTATGACACAATTAGATTCATGTAAGCGACTTCACCTTGTGAGATAAGACTTGGTTGTTATTGTTTGTTTCTCAATACTTTCGTTGATCTTTGACTTGGTGAAAGTTTTCACTACTTTTCATTTATTTTCATTTTGTCCTGTATTAAATAAGCCCTGTTAAATTAAAAATGTCATATATGTTTATATTTTAATTTCAGTTTTGAGTCGAGCTTCCAGGCTGGCCATTAGCTTTCTTGTTTGACCATACTTTATTTGTTACTGGCAGTTGAATGCATGTTGGAATTAGGCTCTTTATTTGAATATAAATGACTTCGGTTTATGTATGTGAAATGCATTCTTATTGCATCCATTGGCTGTGCAGGCTTTTCAGCAGTTTACAGGTATAAACACGGTTATGTACTACAGTCCAACCATTGTTCAAATGGCTGGCTTCCATGCCAATCAGTTGGCTCTTCTTCTGTCCCTCATAGTTGCTGGCATGAACGCCATCGGAACAATTCTTGGCATTTACCTTATTGACAACACAGGGCGGAAAAAATTAGCCCTTTCTAGTTTGGCAGGAGTAATCGCGTCCTTGATAATGTTGGCCGTAGCATTTTACAAACAGTCATCGTCTACAAATGAAGTGTATGGATGGCTTGCAGTTATCGGGTTAGGCCTTTATATTGGTTTCTTCTCGCCAGGAATGGGGCCGGTTCCGTGGACTATAAACTCAGAGATATATCCTGAAGAATATCGAGGTATATGTGGTGGCATGGCAGCTACTGTATGTTGGATTTCAAATTTGATCGTGTCCGAGAGCTTTCTTTCGATTGCTGATGCTATCGGGATTGCTTCAACTTTCTTGATTATTGCTGTTATAGCTGTGGTGGCATTTCTCTTCGTACTTCTGTATGTTCCAGAGACTCAAGGATTGACGTTTGATGAAGTGGAGTTAATATGGAAGGAGAGAGCCTGGGGCAAGAATCCAAACACACAGAACCTTCTTGAGCAGGGAAGTCAATCATAA

Protein sequence

>MS.gene97765.t1

MTVPIAMQSTPGSSGYLDMHPDRKMSFFKNPYILGLAAVAGIGGLLFGYDTGVISGALLYIKDDFPQVRNSNFLQETIVSMAIAGAIVGAAFGGWLNDAYGRKKATLLADVIFILGAILMAAAPDPYVLIVGRLLVGLGVGIASVTAPVYIAEVAPSEIRGSLVSTNVLMITGGQFVSYLVNLVFTQVPGTWRWMLGVSGVPALIQFVCMLFLPESPRWLFIKNRKNEAVDVISKIYDLSRLEDEIDFLTAQSEQERQRRSTIKFWHVFRSKETRLAFLVGGGLLAFQQFTGINTVMYYSPTIVQMAGFHANQLALLLSLIVAGMNAIGTILGIYLIDNTGRKKLALSSLAGVIASLIMLAVAFYKQSSSTNEVYGWLAVIGLGLYIGFFSPGMGPVPWTINSEIYPEEYRGICGGMAATVCWISNLIVSESFLSIADAIGIASTFLIIAVIAVVAFLFVLLYVPETQGLTFDEVELIWKERAWGKNPNTQNLLEQGSQS