Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97877.t1 | XP_013447810.1 | 96.9 | 351 | 10 | 1 | 1 | 350 | 1 | 351 | 1.00E-197 | 699.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97877.t1 | Q9SX25 | 48.0 | 344 | 152 | 10 | 7 | 349 | 13 | 330 | 9.4e-83 | 308.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97877.t1 | I3T2S8 | 96.9 | 351 | 10 | 1 | 1 | 350 | 1 | 351 | 7.4e-198 | 699.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene97877 | MS.gene44055 | PPI |
MS.gene97877 | MS.gene005188 | PPI |
MS.gene91548 | MS.gene97877 | PPI |
MS.gene97877 | MS.gene52621 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97877.t1 | MTR_7g406880 | 96.866 | 351 | 10 | 1 | 1 | 350 | 1 | 351 | 0.0 | 701 |
MS.gene97877.t1 | MTR_1g111280 | 55.620 | 347 | 134 | 9 | 7 | 349 | 13 | 343 | 8.31e-131 | 378 |
MS.gene97877.t1 | MTR_4g050140 | 34.848 | 330 | 198 | 7 | 21 | 350 | 5 | 317 | 2.65e-61 | 199 |
MS.gene97877.t1 | MTR_1g012430 | 36.860 | 293 | 156 | 9 | 21 | 309 | 3 | 270 | 1.25e-59 | 194 |
MS.gene97877.t1 | MTR_7g107040 | 32.344 | 337 | 200 | 9 | 19 | 350 | 5 | 318 | 2.90e-59 | 194 |
MS.gene97877.t1 | MTR_4g086510 | 37.217 | 309 | 175 | 7 | 21 | 327 | 8 | 299 | 1.95e-58 | 192 |
MS.gene97877.t1 | MTR_3g012440 | 34.062 | 320 | 181 | 8 | 21 | 324 | 7 | 312 | 6.10e-56 | 186 |
MS.gene97877.t1 | MTR_0007s0520 | 36.254 | 331 | 177 | 10 | 29 | 350 | 21 | 326 | 3.13e-55 | 184 |
MS.gene97877.t1 | MTR_7g056207 | 34.743 | 331 | 194 | 8 | 21 | 349 | 40 | 350 | 4.81e-55 | 184 |
MS.gene97877.t1 | MTR_3g101420 | 34.925 | 335 | 186 | 9 | 22 | 350 | 8 | 316 | 1.37e-54 | 182 |
MS.gene97877.t1 | MTR_6g464510 | 35.906 | 298 | 165 | 8 | 56 | 349 | 52 | 327 | 2.14e-54 | 181 |
MS.gene97877.t1 | MTR_1g102170 | 38.621 | 290 | 154 | 9 | 40 | 326 | 53 | 321 | 3.61e-53 | 179 |
MS.gene97877.t1 | MTR_8g035520 | 35.604 | 323 | 188 | 7 | 29 | 349 | 21 | 325 | 6.35e-53 | 177 |
MS.gene97877.t1 | MTR_6g464280 | 36.943 | 314 | 168 | 13 | 44 | 349 | 34 | 325 | 9.03e-53 | 177 |
MS.gene97877.t1 | MTR_6g464120 | 38.983 | 295 | 161 | 9 | 34 | 325 | 29 | 307 | 1.25e-52 | 182 |
MS.gene97877.t1 | MTR_1g105020 | 35.119 | 336 | 189 | 11 | 21 | 348 | 8 | 322 | 1.52e-52 | 176 |
MS.gene97877.t1 | MTR_8g035500 | 34.375 | 288 | 176 | 5 | 29 | 314 | 12 | 288 | 3.66e-52 | 175 |
MS.gene97877.t1 | MTR_8g035540 | 32.822 | 326 | 195 | 8 | 29 | 348 | 9 | 316 | 3.16e-49 | 168 |
MS.gene97877.t1 | MTR_1g102160 | 35.669 | 314 | 179 | 10 | 38 | 348 | 32 | 325 | 7.28e-49 | 167 |
MS.gene97877.t1 | MTR_6g464320 | 36.957 | 276 | 151 | 9 | 44 | 312 | 35 | 294 | 1.57e-48 | 166 |
MS.gene97877.t1 | MTR_8g040860 | 33.033 | 333 | 196 | 9 | 21 | 345 | 16 | 329 | 2.63e-48 | 166 |
MS.gene97877.t1 | MTR_4g086470 | 34.615 | 286 | 167 | 6 | 24 | 309 | 14 | 279 | 2.58e-47 | 163 |
MS.gene97877.t1 | MTR_3g450680 | 32.941 | 340 | 196 | 10 | 21 | 350 | 16 | 333 | 3.53e-47 | 163 |
MS.gene97877.t1 | MTR_6g065430 | 34.228 | 298 | 173 | 6 | 51 | 348 | 53 | 327 | 3.78e-47 | 163 |
MS.gene97877.t1 | MTR_6g065120 | 33.553 | 304 | 173 | 8 | 54 | 350 | 56 | 337 | 7.47e-47 | 162 |
MS.gene97877.t1 | MTR_6g065370 | 33.113 | 302 | 176 | 7 | 54 | 350 | 55 | 335 | 2.22e-46 | 161 |
MS.gene97877.t1 | MTR_6g065400 | 33.444 | 302 | 175 | 7 | 54 | 350 | 55 | 335 | 4.32e-46 | 160 |
MS.gene97877.t1 | MTR_6g065270 | 32.353 | 306 | 177 | 7 | 54 | 350 | 53 | 337 | 4.36e-46 | 160 |
MS.gene97877.t1 | MTR_6g065110 | 32.476 | 311 | 180 | 8 | 46 | 349 | 48 | 335 | 4.58e-46 | 160 |
MS.gene97877.t1 | MTR_4g086540 | 33.731 | 335 | 171 | 11 | 21 | 350 | 18 | 306 | 6.54e-45 | 156 |
MS.gene97877.t1 | MTR_1g082210 | 33.876 | 307 | 166 | 7 | 54 | 349 | 61 | 341 | 3.37e-44 | 155 |
MS.gene97877.t1 | MTR_4g086480 | 32.026 | 306 | 186 | 8 | 24 | 327 | 15 | 300 | 1.77e-43 | 153 |
MS.gene97877.t1 | MTR_5g005850 | 31.953 | 338 | 198 | 14 | 21 | 348 | 13 | 328 | 1.99e-42 | 150 |
MS.gene97877.t1 | MTR_1g104930 | 34.328 | 335 | 193 | 10 | 21 | 350 | 12 | 324 | 8.95e-42 | 148 |
MS.gene97877.t1 | MTR_7g051020 | 33.731 | 335 | 198 | 10 | 21 | 350 | 12 | 327 | 2.44e-41 | 147 |
MS.gene97877.t1 | MTR_7g093950 | 34.084 | 311 | 166 | 11 | 54 | 349 | 61 | 347 | 2.84e-40 | 145 |
MS.gene97877.t1 | MTR_6g065340 | 31.457 | 302 | 165 | 7 | 54 | 350 | 66 | 330 | 3.59e-40 | 144 |
MS.gene97877.t1 | MTR_1g089310 | 34.028 | 288 | 155 | 8 | 54 | 329 | 61 | 325 | 4.62e-40 | 144 |
MS.gene97877.t1 | MTR_1g089310 | 34.028 | 288 | 155 | 8 | 54 | 329 | 77 | 341 | 5.17e-40 | 145 |
MS.gene97877.t1 | MTR_5g005920 | 28.994 | 338 | 216 | 10 | 20 | 350 | 12 | 332 | 9.10e-38 | 138 |
MS.gene97877.t1 | MTR_5g005900 | 31.757 | 296 | 177 | 9 | 21 | 308 | 9 | 287 | 7.68e-37 | 135 |
MS.gene97877.t1 | MTR_1g104933 | 32.353 | 340 | 189 | 11 | 21 | 350 | 10 | 318 | 4.06e-34 | 128 |
MS.gene97877.t1 | MTR_6g022710 | 31.802 | 283 | 153 | 9 | 74 | 327 | 146 | 417 | 7.73e-28 | 113 |
MS.gene97877.t1 | MTR_0007s0480 | 32.804 | 189 | 101 | 8 | 171 | 350 | 1 | 172 | 2.12e-18 | 82.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97877.t1 | AT5G16080 | 49.304 | 359 | 155 | 10 | 1 | 349 | 1 | 342 | 1.98e-113 | 333 |
MS.gene97877.t1 | AT1G68620 | 48.529 | 340 | 148 | 10 | 11 | 349 | 17 | 330 | 1.01e-106 | 316 |
MS.gene97877.t1 | AT5G62180 | 37.458 | 299 | 164 | 9 | 54 | 348 | 44 | 323 | 5.75e-56 | 186 |
MS.gene97877.t1 | AT2G45610 | 32.000 | 325 | 200 | 7 | 29 | 349 | 17 | 324 | 3.03e-51 | 173 |
MS.gene97877.t1 | AT5G06570 | 36.310 | 336 | 192 | 10 | 19 | 349 | 23 | 341 | 7.02e-51 | 173 |
MS.gene97877.t1 | AT5G06570 | 36.310 | 336 | 192 | 10 | 19 | 349 | 23 | 341 | 7.02e-51 | 173 |
MS.gene97877.t1 | AT5G06570 | 36.310 | 336 | 192 | 10 | 19 | 349 | 8 | 326 | 7.03e-51 | 172 |
MS.gene97877.t1 | AT5G06570 | 36.310 | 336 | 192 | 10 | 19 | 349 | 8 | 326 | 7.03e-51 | 172 |
MS.gene97877.t1 | AT1G47480 | 35.802 | 324 | 174 | 9 | 31 | 350 | 18 | 311 | 5.11e-50 | 170 |
MS.gene97877.t1 | AT5G27320 | 34.551 | 301 | 165 | 7 | 54 | 344 | 61 | 339 | 3.55e-46 | 160 |
MS.gene97877.t1 | AT3G48700 | 29.730 | 333 | 219 | 6 | 21 | 349 | 5 | 326 | 8.80e-46 | 159 |
MS.gene97877.t1 | AT2G45600 | 32.459 | 305 | 179 | 8 | 29 | 327 | 16 | 299 | 1.77e-44 | 155 |
MS.gene97877.t1 | AT3G05120 | 32.738 | 336 | 187 | 8 | 21 | 344 | 33 | 341 | 2.47e-44 | 155 |
MS.gene97877.t1 | AT5G23530 | 32.776 | 299 | 171 | 8 | 54 | 350 | 58 | 328 | 2.16e-43 | 153 |
MS.gene97877.t1 | AT3G48690 | 32.394 | 284 | 181 | 6 | 28 | 311 | 12 | 284 | 2.64e-43 | 152 |
MS.gene97877.t1 | AT3G63010 | 35.099 | 302 | 156 | 9 | 54 | 340 | 61 | 337 | 8.79e-43 | 152 |
MS.gene97877.t1 | AT1G19190 | 32.119 | 302 | 181 | 9 | 29 | 326 | 13 | 294 | 4.81e-41 | 146 |
MS.gene97877.t1 | AT1G49640 | 30.164 | 305 | 191 | 9 | 28 | 330 | 13 | 297 | 1.89e-40 | 145 |
MS.gene97877.t1 | AT2G03550 | 30.462 | 325 | 200 | 10 | 28 | 350 | 12 | 312 | 2.19e-39 | 142 |
MS.gene97877.t1 | AT1G49650 | 30.634 | 284 | 182 | 7 | 28 | 311 | 68 | 336 | 1.00e-37 | 139 |
MS.gene97877.t1 | AT1G49660 | 29.965 | 287 | 187 | 6 | 21 | 307 | 5 | 277 | 6.29e-37 | 135 |
MS.gene97877.t1 | AT3G27320 | 27.841 | 352 | 164 | 9 | 54 | 327 | 56 | 395 | 2.65e-27 | 111 |
MS.gene97877.t1 | AT3G27320 | 30.584 | 291 | 152 | 9 | 72 | 327 | 152 | 427 | 4.48e-26 | 108 |
MS.gene97877.t1 | AT5G14310 | 29.286 | 280 | 156 | 6 | 81 | 327 | 143 | 413 | 1.59e-24 | 103 |
Find 59 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAACAAAGAAACAAATTTA+TGG | 0.195468 | 7.2:-91808955 | MS.gene97877:CDS |
TTGAATCCGTTATCTTTAAA+AGG | 0.201325 | 7.2:-91808527 | MS.gene97877:CDS |
CGCCCTTAGTTTATCTGTTT+CGG | 0.216035 | 7.2:-91808429 | MS.gene97877:CDS |
TATCTGTTTCGGATACTTAT+TGG | 0.235271 | 7.2:-91808418 | MS.gene97877:CDS |
TTTGTGTTGGTTCAGTTTCA+TGG | 0.279652 | 7.2:-91808844 | MS.gene97877:CDS |
CGCAATTTGCTTTCAAAGAA+AGG | 0.293785 | 7.2:+91808795 | None:intergenic |
CAATGATGATGGGTCCCTTT+TGG | 0.295424 | 7.2:+91809098 | None:intergenic |
GTTGAAACTTTCGTGTATAA+AGG | 0.295666 | 7.2:-91808209 | MS.gene97877:CDS |
TTCTATCATGATGTGTGTTT+CGG | 0.303511 | 7.2:-91808297 | MS.gene97877:CDS |
TGCAAACTTCAATCAGAAAA+TGG | 0.305545 | 7.2:-91809001 | MS.gene97877:CDS |
AAAGGTTGTTTAAGAATTCA+TGG | 0.315752 | 7.2:+91808813 | None:intergenic |
TTCAATTTCTTCAATGATGA+TGG | 0.317801 | 7.2:+91809087 | None:intergenic |
ATTATCAACTTTCTCATGTT+AGG | 0.333451 | 7.2:-91808157 | MS.gene97877:CDS |
CATGATGTGTGTTTCGGAAT+TGG | 0.344037 | 7.2:-91808291 | MS.gene97877:CDS |
TTTGCAAGAGGATTACAATA+AGG | 0.345111 | 7.2:+91808353 | None:intergenic |
CCTTTGCTTGTTTATTTCCA+TGG | 0.348913 | 7.2:-91808875 | MS.gene97877:CDS |
AATGCTTCAACCACCAGTTT+TGG | 0.372137 | 7.2:+91808660 | None:intergenic |
CAACAAAGAAACAAATTTAT+GGG | 0.402344 | 7.2:-91808954 | MS.gene97877:CDS |
TATTGTAATCCTCTTGCAAA+TGG | 0.402398 | 7.2:-91808350 | MS.gene97877:CDS |
AGCAAATTGCGTCGTTGTCT+CGG | 0.406220 | 7.2:-91808783 | MS.gene97877:CDS |
TCAAATTGTTTGGTTAAAGC+AGG | 0.411777 | 7.2:-91808239 | MS.gene97877:CDS |
AATGTTGTCGCTACGCGCTT+AGG | 0.417789 | 7.2:-91808581 | MS.gene97877:CDS |
CAAGCAAAGGAAGCTTGTTA+AGG | 0.419783 | 7.2:+91808888 | None:intergenic |
TATCCGAAACAGATAAACTA+AGG | 0.441130 | 7.2:+91808426 | None:intergenic |
TGCTAAGCTGAGAGATTTGA+GGG | 0.442682 | 7.2:-91808324 | MS.gene97877:CDS |
CTTGTTTATTTCCATGGTGG+TGG | 0.442946 | 7.2:-91808869 | MS.gene97877:CDS |
GAAACACACATCATGATAGA+AGG | 0.449732 | 7.2:+91808299 | None:intergenic |
TTGTTGACGAAAATGTTTCT+CGG | 0.451163 | 7.2:+91808457 | None:intergenic |
GGTGATGAATGTTGTTTGGT+TGG | 0.456586 | 7.2:+91809119 | None:intergenic |
AAACAACATTCATCACCAAA+AGG | 0.466303 | 7.2:-91809113 | MS.gene97877:CDS |
TTGCTAAGCTGAGAGATTTG+AGG | 0.473182 | 7.2:-91808325 | MS.gene97877:CDS |
TCATGTTAGGACACAAGAAA+TGG | 0.476647 | 7.2:-91808144 | MS.gene97877:CDS |
CTTATAAAAGTTCACAAAGA+TGG | 0.478538 | 7.2:-91809061 | MS.gene97877:CDS |
GATGAATGTTGTTTGGTTGG+TGG | 0.481060 | 7.2:+91809122 | None:intergenic |
TGGCGATTATCTCTTCCCAT+TGG | 0.483762 | 7.2:-91808398 | MS.gene97877:CDS |
TGAAGTTTGCATGTGACATT+GGG | 0.493985 | 7.2:+91809013 | None:intergenic |
TCAATTTCTTCAATGATGAT+GGG | 0.501531 | 7.2:+91809088 | None:intergenic |
ATCATCATTGAAGAAATTGA+AGG | 0.506909 | 7.2:-91809085 | MS.gene97877:CDS |
GCGTGTAACGGAAACTCCAA+TGG | 0.508909 | 7.2:+91808382 | None:intergenic |
TGAGAGGTTAATGTTGATGT+TGG | 0.509861 | 7.2:+91808917 | None:intergenic |
CTTGTTAAGGTTATTATGAG+AGG | 0.519594 | 7.2:+91808901 | None:intergenic |
GTGACATTGGGAACAATTTG+TGG | 0.520969 | 7.2:+91809025 | None:intergenic |
CAAATTGTTTGGTTAAAGCA+GGG | 0.521313 | 7.2:-91808238 | MS.gene97877:CDS |
TTGAAGTTTGCATGTGACAT+TGG | 0.540996 | 7.2:+91809012 | None:intergenic |
ATTGTAAGCTATATTAGCTC+CGG | 0.543133 | 7.2:+91808601 | None:intergenic |
AACAACATTCATCACCAAAA+GGG | 0.550977 | 7.2:-91809112 | MS.gene97877:CDS |
ATAAGGATGATCGCGTGTAA+CGG | 0.552734 | 7.2:+91808370 | None:intergenic |
ACTTTCGTGTATAAAGGTGT+TGG | 0.555003 | 7.2:-91808203 | MS.gene97877:CDS |
TTTCTATGTGGTGATAGCGC+CGG | 0.561061 | 7.2:-91808620 | MS.gene97877:CDS |
TTAGCAATTCCATTTGCAAG+AGG | 0.580767 | 7.2:+91808341 | None:intergenic |
CGTGTAACGGAAACTCCAAT+GGG | 0.593527 | 7.2:+91808383 | None:intergenic |
AAAGCGTCGTCGTAAGCAGA+AGG | 0.602298 | 7.2:+91808728 | None:intergenic |
ACGCTTTCAATGCTCTCATG+TGG | 0.609532 | 7.2:-91808712 | MS.gene97877:CDS |
CCATGGAAATAAACAAGCAA+AGG | 0.610194 | 7.2:+91808875 | None:intergenic |
CGAAACAGATAAACTAAGGG+CGG | 0.626378 | 7.2:+91808430 | None:intergenic |
TATACTTAGAGATAGAAACT+TGG | 0.629561 | 7.2:-91808267 | MS.gene97877:CDS |
ATCCGAAACAGATAAACTAA+GGG | 0.635935 | 7.2:+91808427 | None:intergenic |
TTGCTTGTTTATTTCCATGG+TGG | 0.642094 | 7.2:-91808872 | MS.gene97877:CDS |
CAACACAAAATCCACCACCA+TGG | 0.669925 | 7.2:+91808858 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATAATAAAAACCAAAAC+TGG | - | chr7.2:91808581-91808600 | MS.gene97877:CDS | 15.0% |
!! | CAACAAAGAAACAAATTTAT+GGG | - | chr7.2:91808300-91808319 | MS.gene97877:CDS | 20.0% |
!! | TCAACAAAGAAACAAATTTA+TGG | - | chr7.2:91808299-91808318 | MS.gene97877:CDS | 20.0% |
!!! | ATAACACCTTTTAAAGATAA+CGG | + | chr7.2:91808736-91808755 | None:intergenic | 20.0% |
!!! | ATATTGATTCAACCTTTTTT+CGG | - | chr7.2:91808754-91808773 | MS.gene97877:CDS | 20.0% |
! | AAAGGTTGTTTAAGAATTCA+TGG | + | chr7.2:91808444-91808463 | None:intergenic | 25.0% |
! | ATAATAAAAACCAAAACTGG+TGG | - | chr7.2:91808584-91808603 | MS.gene97877:CDS | 25.0% |
! | ATCATCATTGAAGAAATTGA+AGG | - | chr7.2:91808169-91808188 | MS.gene97877:CDS | 25.0% |
! | ATTATCAACTTTCTCATGTT+AGG | - | chr7.2:91809097-91809116 | MS.gene97877:CDS | 25.0% |
! | CTTATAAAAGTTCACAAAGA+TGG | - | chr7.2:91808193-91808212 | MS.gene97877:CDS | 25.0% |
! | TATACTTAGAGATAGAAACT+TGG | - | chr7.2:91808987-91809006 | MS.gene97877:CDS | 25.0% |
! | TCAATTTCTTCAATGATGAT+GGG | + | chr7.2:91808169-91808188 | None:intergenic | 25.0% |
! | TTCAATTTCTTCAATGATGA+TGG | + | chr7.2:91808170-91808189 | None:intergenic | 25.0% |
! | TTGAATCCGTTATCTTTAAA+AGG | - | chr7.2:91808727-91808746 | MS.gene97877:CDS | 25.0% |
!! | ATTTCTTCTCTTTTTCTATG+TGG | - | chr7.2:91808622-91808641 | MS.gene97877:CDS | 25.0% |
AAACAACATTCATCACCAAA+AGG | - | chr7.2:91808141-91808160 | MS.gene97877:CDS | 30.0% | |
AACAACATTCATCACCAAAA+GGG | - | chr7.2:91808142-91808161 | MS.gene97877:CDS | 30.0% | |
ATCCGAAACAGATAAACTAA+GGG | + | chr7.2:91808830-91808849 | None:intergenic | 30.0% | |
ATTGTAAGCTATATTAGCTC+CGG | + | chr7.2:91808656-91808675 | None:intergenic | 30.0% | |
CAAATTGTTTGGTTAAAGCA+GGG | - | chr7.2:91809016-91809035 | MS.gene97877:CDS | 30.0% | |
CTTGTTAAGGTTATTATGAG+AGG | + | chr7.2:91808356-91808375 | None:intergenic | 30.0% | |
GTTGAAACTTTCGTGTATAA+AGG | - | chr7.2:91809045-91809064 | MS.gene97877:CDS | 30.0% | |
TATCCGAAACAGATAAACTA+AGG | + | chr7.2:91808831-91808850 | None:intergenic | 30.0% | |
TATCTGTTTCGGATACTTAT+TGG | - | chr7.2:91808836-91808855 | MS.gene97877:CDS | 30.0% | |
TATTGTAATCCTCTTGCAAA+TGG | - | chr7.2:91808904-91808923 | MS.gene97877:CDS | 30.0% | |
TCAAATTGTTTGGTTAAAGC+AGG | - | chr7.2:91809015-91809034 | MS.gene97877:CDS | 30.0% | |
TGCAAACTTCAATCAGAAAA+TGG | - | chr7.2:91808253-91808272 | MS.gene97877:CDS | 30.0% | |
TTCTATCATGATGTGTGTTT+CGG | - | chr7.2:91808957-91808976 | MS.gene97877:CDS | 30.0% | |
TTGTTGACGAAAATGTTTCT+CGG | + | chr7.2:91808800-91808819 | None:intergenic | 30.0% | |
TTTGCAAGAGGATTACAATA+AGG | + | chr7.2:91808904-91808923 | None:intergenic | 30.0% | |
! | CTTGGAGTTTTCAAATTGTT+TGG | - | chr7.2:91809005-91809024 | MS.gene97877:CDS | 30.0% |
!!! | TTTTGGTGATGAATGTTGTT+TGG | + | chr7.2:91808142-91808161 | None:intergenic | 30.0% |
CCATGGAAATAAACAAGCAA+AGG | + | chr7.2:91808382-91808401 | None:intergenic | 35.0% | |
CCTTTGCTTGTTTATTTCCA+TGG | - | chr7.2:91808379-91808398 | MS.gene97877:CDS | 35.0% | |
GAAACACACATCATGATAGA+AGG | + | chr7.2:91808958-91808977 | None:intergenic | 35.0% | |
TCATGTTAGGACACAAGAAA+TGG | - | chr7.2:91809110-91809129 | MS.gene97877:CDS | 35.0% | |
TGAAGTTTGCATGTGACATT+GGG | + | chr7.2:91808244-91808263 | None:intergenic | 35.0% | |
TGAGAGGTTAATGTTGATGT+TGG | + | chr7.2:91808340-91808359 | None:intergenic | 35.0% | |
TTAGCAATTCCATTTGCAAG+AGG | + | chr7.2:91808916-91808935 | None:intergenic | 35.0% | |
TTGAAGTTTGCATGTGACAT+TGG | + | chr7.2:91808245-91808264 | None:intergenic | 35.0% | |
TTGCTTGTTTATTTCCATGG+TGG | - | chr7.2:91808382-91808401 | MS.gene97877:CDS | 35.0% | |
! | ACTTTCGTGTATAAAGGTGT+TGG | - | chr7.2:91809051-91809070 | MS.gene97877:CDS | 35.0% |
! | CGCAATTTGCTTTCAAAGAA+AGG | + | chr7.2:91808462-91808481 | None:intergenic | 35.0% |
!! | TTTGTGTTGGTTCAGTTTCA+TGG | - | chr7.2:91808410-91808429 | MS.gene97877:CDS | 35.0% |
!!! | TTGATTCAACCTTTTTTCGG+AGG | - | chr7.2:91808757-91808776 | MS.gene97877:CDS | 35.0% |
ATAAGGATGATCGCGTGTAA+CGG | + | chr7.2:91808887-91808906 | None:intergenic | 40.0% | |
CATGATGTGTGTTTCGGAAT+TGG | - | chr7.2:91808963-91808982 | MS.gene97877:CDS | 40.0% | |
CGAAACAGATAAACTAAGGG+CGG | + | chr7.2:91808827-91808846 | None:intergenic | 40.0% | |
CGCCCTTAGTTTATCTGTTT+CGG | - | chr7.2:91808825-91808844 | MS.gene97877:CDS | 40.0% | |
CTTGTTTATTTCCATGGTGG+TGG | - | chr7.2:91808385-91808404 | MS.gene97877:CDS | 40.0% | |
CTTTCTTCTCCTCCGAAAAA+AGG | + | chr7.2:91808769-91808788 | None:intergenic | 40.0% | |
GTGACATTGGGAACAATTTG+TGG | + | chr7.2:91808232-91808251 | None:intergenic | 40.0% | |
TGCTAAGCTGAGAGATTTGA+GGG | - | chr7.2:91808930-91808949 | MS.gene97877:CDS | 40.0% | |
TTGCTAAGCTGAGAGATTTG+AGG | - | chr7.2:91808929-91808948 | MS.gene97877:CDS | 40.0% | |
! | AATGCTTCAACCACCAGTTT+TGG | + | chr7.2:91808597-91808616 | None:intergenic | 40.0% |
! | GATGAATGTTGTTTGGTTGG+TGG | + | chr7.2:91808135-91808154 | None:intergenic | 40.0% |
! | GGTGATGAATGTTGTTTGGT+TGG | + | chr7.2:91808138-91808157 | None:intergenic | 40.0% |
!! | CAAGCAAAGGAAGCTTGTTA+AGG | + | chr7.2:91808369-91808388 | None:intergenic | 40.0% |
!! | GACGATTTTCAGGAGCTAAA+CGG | + | chr7.2:91808504-91808523 | None:intergenic | 40.0% |
ACGCTTTCAATGCTCTCATG+TGG | - | chr7.2:91808542-91808561 | MS.gene97877:CDS | 45.0% | |
AGCAAATTGCGTCGTTGTCT+CGG | - | chr7.2:91808471-91808490 | MS.gene97877:CDS | 45.0% | |
CAACACAAAATCCACCACCA+TGG | + | chr7.2:91808399-91808418 | None:intergenic | 45.0% | |
TGGCGATTATCTCTTCCCAT+TGG | - | chr7.2:91808856-91808875 | MS.gene97877:CDS | 45.0% | |
! | CGTGTAACGGAAACTCCAAT+GGG | + | chr7.2:91808874-91808893 | None:intergenic | 45.0% |
! | GCAGAAGGAAGACGATTTTC+AGG | + | chr7.2:91808514-91808533 | None:intergenic | 45.0% |
! | TTTCTATGTGGTGATAGCGC+CGG | - | chr7.2:91808634-91808653 | MS.gene97877:CDS | 45.0% |
!!! | CAATGATGATGGGTCCCTTT+TGG | + | chr7.2:91808159-91808178 | None:intergenic | 45.0% |
!!! | CATGGTGGTGGATTTTGTGT+TGG | - | chr7.2:91808397-91808416 | MS.gene97877:CDS | 45.0% |
AATGTTGTCGCTACGCGCTT+AGG | - | chr7.2:91808673-91808692 | MS.gene97877:CDS | 50.0% | |
! | GCGTGTAACGGAAACTCCAA+TGG | + | chr7.2:91808875-91808894 | None:intergenic | 50.0% |
!! | AAAGCGTCGTCGTAAGCAGA+AGG | + | chr7.2:91808529-91808548 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 91808112 | 91809164 | 91808112 | ID=MS.gene97877 |
chr7.2 | mRNA | 91808112 | 91809164 | 91808112 | ID=MS.gene97877.t1;Parent=MS.gene97877 |
chr7.2 | exon | 91808112 | 91809164 | 91808112 | ID=MS.gene97877.t1.exon1;Parent=MS.gene97877.t1 |
chr7.2 | CDS | 91808112 | 91809164 | 91808112 | ID=cds.MS.gene97877.t1;Parent=MS.gene97877.t1 |
Gene Sequence |
Protein sequence |