Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97911.t1 | XP_013452524.1 | 92.7 | 327 | 23 | 1 | 1 | 326 | 1 | 327 | 1.00E-175 | 625.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97911.t1 | Q0ZPV7 | 53.9 | 330 | 144 | 3 | 1 | 325 | 1 | 327 | 2.8e-97 | 356.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97911.t1 | A0A072UA80 | 92.7 | 327 | 23 | 1 | 1 | 326 | 1 | 327 | 7.4e-176 | 625.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene97911 | MS.gene019398 | PPI |
MS.gene23638 | MS.gene97911 | PPI |
MS.gene87835 | MS.gene97911 | PPI |
MS.gene37505 | MS.gene97911 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97911.t1 | MTR_6g464510 | 92.661 | 327 | 23 | 1 | 1 | 326 | 1 | 327 | 0.0 | 627 |
MS.gene97911.t1 | MTR_6g464280 | 64.955 | 331 | 105 | 5 | 1 | 326 | 1 | 325 | 6.25e-154 | 434 |
MS.gene97911.t1 | MTR_6g464320 | 64.955 | 331 | 106 | 4 | 1 | 326 | 1 | 326 | 3.01e-152 | 430 |
MS.gene97911.t1 | MTR_1g102160 | 54.407 | 329 | 142 | 3 | 1 | 325 | 1 | 325 | 6.72e-126 | 363 |
MS.gene97911.t1 | MTR_1g102170 | 52.396 | 313 | 147 | 1 | 12 | 324 | 27 | 337 | 3.82e-118 | 344 |
MS.gene97911.t1 | MTR_6g464120 | 53.822 | 314 | 140 | 4 | 7 | 318 | 8 | 318 | 6.19e-112 | 335 |
MS.gene97911.t1 | MTR_8g035520 | 49.847 | 327 | 147 | 6 | 9 | 326 | 7 | 325 | 8.88e-105 | 310 |
MS.gene97911.t1 | MTR_0007s0520 | 48.553 | 311 | 147 | 5 | 23 | 326 | 21 | 325 | 2.06e-99 | 296 |
MS.gene97911.t1 | MTR_8g035540 | 48.137 | 322 | 150 | 8 | 15 | 325 | 1 | 316 | 4.23e-99 | 295 |
MS.gene97911.t1 | MTR_8g035500 | 40.566 | 318 | 176 | 5 | 16 | 325 | 5 | 317 | 4.44e-82 | 251 |
MS.gene97911.t1 | MTR_1g111280 | 35.103 | 339 | 193 | 8 | 4 | 326 | 16 | 343 | 3.50e-59 | 194 |
MS.gene97911.t1 | MTR_7g406880 | 35.570 | 298 | 166 | 9 | 52 | 326 | 56 | 350 | 2.28e-51 | 173 |
MS.gene97911.t1 | MTR_6g065400 | 35.906 | 298 | 160 | 8 | 27 | 300 | 31 | 321 | 1.66e-49 | 168 |
MS.gene97911.t1 | MTR_6g065430 | 35.738 | 305 | 183 | 8 | 27 | 325 | 30 | 327 | 9.63e-49 | 166 |
MS.gene97911.t1 | MTR_6g065120 | 34.713 | 314 | 186 | 8 | 25 | 326 | 30 | 336 | 3.73e-48 | 165 |
MS.gene97911.t1 | MTR_0007s0480 | 48.851 | 174 | 78 | 4 | 160 | 326 | 2 | 171 | 8.86e-48 | 159 |
MS.gene97911.t1 | MTR_6g065110 | 34.516 | 310 | 187 | 7 | 27 | 326 | 32 | 335 | 1.45e-47 | 163 |
MS.gene97911.t1 | MTR_6g065370 | 34.564 | 298 | 164 | 8 | 27 | 300 | 31 | 321 | 4.76e-47 | 162 |
MS.gene97911.t1 | MTR_6g065270 | 34.286 | 315 | 185 | 10 | 27 | 326 | 29 | 336 | 7.30e-46 | 159 |
MS.gene97911.t1 | MTR_4g086510 | 33.648 | 318 | 166 | 10 | 31 | 326 | 24 | 318 | 3.14e-44 | 154 |
MS.gene97911.t1 | MTR_7g056207 | 34.483 | 319 | 159 | 14 | 31 | 326 | 56 | 347 | 2.43e-43 | 152 |
MS.gene97911.t1 | MTR_7g107040 | 33.117 | 308 | 187 | 9 | 27 | 325 | 19 | 316 | 1.06e-42 | 150 |
MS.gene97911.t1 | MTR_4g050140 | 34.043 | 282 | 175 | 6 | 51 | 325 | 38 | 315 | 1.92e-42 | 149 |
MS.gene97911.t1 | MTR_6g065340 | 31.884 | 345 | 193 | 10 | 1 | 326 | 8 | 329 | 7.80e-41 | 145 |
MS.gene97911.t1 | MTR_3g101420 | 33.333 | 333 | 187 | 10 | 8 | 326 | 4 | 315 | 5.94e-40 | 142 |
MS.gene97911.t1 | MTR_1g012430 | 33.704 | 270 | 160 | 9 | 27 | 291 | 15 | 270 | 2.77e-38 | 138 |
MS.gene97911.t1 | MTR_4g086480 | 31.699 | 306 | 183 | 8 | 31 | 325 | 28 | 318 | 1.45e-37 | 136 |
MS.gene97911.t1 | MTR_1g089310 | 34.310 | 239 | 136 | 4 | 22 | 246 | 32 | 263 | 3.80e-37 | 136 |
MS.gene97911.t1 | MTR_1g089310 | 34.310 | 239 | 136 | 4 | 22 | 246 | 48 | 279 | 4.08e-37 | 136 |
MS.gene97911.t1 | MTR_7g093950 | 32.917 | 240 | 142 | 4 | 22 | 246 | 32 | 267 | 2.56e-35 | 131 |
MS.gene97911.t1 | MTR_4g086540 | 29.568 | 301 | 181 | 7 | 28 | 326 | 31 | 302 | 2.67e-34 | 128 |
MS.gene97911.t1 | MTR_1g082210 | 32.231 | 242 | 137 | 8 | 22 | 246 | 32 | 263 | 6.95e-32 | 122 |
MS.gene97911.t1 | MTR_4g086470 | 32.171 | 258 | 157 | 6 | 39 | 291 | 35 | 279 | 1.09e-31 | 121 |
MS.gene97911.t1 | MTR_3g450680 | 31.250 | 320 | 183 | 12 | 27 | 325 | 28 | 331 | 2.13e-31 | 120 |
MS.gene97911.t1 | MTR_3g012440 | 32.618 | 233 | 147 | 4 | 67 | 294 | 73 | 300 | 2.01e-30 | 118 |
MS.gene97911.t1 | MTR_5g005850 | 29.747 | 316 | 191 | 12 | 28 | 325 | 26 | 328 | 7.23e-30 | 116 |
MS.gene97911.t1 | MTR_1g105020 | 36.199 | 221 | 128 | 6 | 28 | 239 | 21 | 237 | 4.75e-29 | 114 |
MS.gene97911.t1 | MTR_5g005920 | 25.155 | 322 | 212 | 11 | 22 | 325 | 20 | 330 | 1.55e-27 | 110 |
MS.gene97911.t1 | MTR_8g040860 | 30.275 | 327 | 185 | 14 | 22 | 325 | 22 | 328 | 3.09e-27 | 109 |
MS.gene97911.t1 | MTR_5g005900 | 29.224 | 219 | 140 | 5 | 27 | 235 | 21 | 234 | 2.91e-26 | 106 |
MS.gene97911.t1 | MTR_6g022710 | 30.800 | 250 | 128 | 4 | 30 | 235 | 98 | 346 | 6.82e-26 | 107 |
MS.gene97911.t1 | MTR_1g104930 | 38.172 | 186 | 97 | 6 | 27 | 203 | 24 | 200 | 8.58e-25 | 102 |
MS.gene97911.t1 | MTR_7g051020 | 29.874 | 318 | 188 | 11 | 27 | 325 | 24 | 325 | 2.49e-22 | 95.9 |
MS.gene97911.t1 | MTR_1g104933 | 36.943 | 157 | 88 | 3 | 54 | 203 | 46 | 198 | 3.13e-18 | 84.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97911.t1 | AT5G62180 | 48.447 | 322 | 161 | 2 | 9 | 325 | 2 | 323 | 2.02e-111 | 327 |
MS.gene97911.t1 | AT2G45600 | 46.341 | 328 | 153 | 6 | 7 | 325 | 2 | 315 | 1.27e-98 | 294 |
MS.gene97911.t1 | AT2G45610 | 44.377 | 329 | 167 | 7 | 7 | 326 | 3 | 324 | 7.99e-89 | 269 |
MS.gene97911.t1 | AT5G16080 | 35.448 | 268 | 151 | 6 | 37 | 294 | 50 | 305 | 1.57e-47 | 163 |
MS.gene97911.t1 | AT1G68620 | 40.000 | 210 | 118 | 6 | 42 | 245 | 46 | 253 | 1.44e-46 | 160 |
MS.gene97911.t1 | AT5G23530 | 33.564 | 289 | 177 | 7 | 40 | 325 | 50 | 326 | 3.98e-42 | 149 |
MS.gene97911.t1 | AT5G06570 | 35.764 | 288 | 166 | 9 | 51 | 326 | 46 | 326 | 2.50e-38 | 139 |
MS.gene97911.t1 | AT5G06570 | 35.764 | 288 | 166 | 9 | 51 | 326 | 46 | 326 | 2.50e-38 | 139 |
MS.gene97911.t1 | AT5G06570 | 35.764 | 288 | 166 | 9 | 51 | 326 | 61 | 341 | 4.30e-38 | 139 |
MS.gene97911.t1 | AT5G06570 | 35.764 | 288 | 166 | 9 | 51 | 326 | 61 | 341 | 4.30e-38 | 139 |
MS.gene97911.t1 | AT3G63010 | 41.954 | 174 | 93 | 3 | 74 | 246 | 98 | 264 | 3.17e-37 | 137 |
MS.gene97911.t1 | AT1G49640 | 37.500 | 192 | 111 | 5 | 20 | 207 | 10 | 196 | 3.39e-36 | 133 |
MS.gene97911.t1 | AT1G19190 | 33.730 | 252 | 147 | 7 | 28 | 271 | 18 | 257 | 3.63e-35 | 130 |
MS.gene97911.t1 | AT3G48690 | 35.945 | 217 | 126 | 6 | 31 | 239 | 21 | 232 | 5.94e-35 | 130 |
MS.gene97911.t1 | AT1G47480 | 33.482 | 224 | 139 | 4 | 23 | 246 | 16 | 229 | 4.66e-34 | 127 |
MS.gene97911.t1 | AT5G27320 | 34.855 | 241 | 131 | 8 | 22 | 246 | 32 | 262 | 1.28e-33 | 127 |
MS.gene97911.t1 | AT3G48700 | 33.735 | 249 | 146 | 8 | 12 | 247 | 3 | 245 | 2.77e-33 | 125 |
MS.gene97911.t1 | AT3G05120 | 33.197 | 244 | 133 | 8 | 22 | 246 | 32 | 264 | 3.42e-29 | 115 |
MS.gene97911.t1 | AT3G27320 | 33.816 | 207 | 96 | 4 | 68 | 235 | 120 | 324 | 3.71e-29 | 116 |
MS.gene97911.t1 | AT3G27320 | 33.816 | 207 | 96 | 4 | 68 | 235 | 152 | 356 | 4.57e-29 | 116 |
MS.gene97911.t1 | AT1G49650 | 34.759 | 187 | 110 | 5 | 28 | 207 | 74 | 255 | 1.29e-28 | 114 |
MS.gene97911.t1 | AT1G49660 | 34.759 | 187 | 111 | 5 | 28 | 207 | 18 | 200 | 2.36e-28 | 112 |
MS.gene97911.t1 | AT5G14310 | 33.816 | 207 | 99 | 2 | 78 | 246 | 147 | 353 | 7.81e-28 | 112 |
MS.gene97911.t1 | AT2G03550 | 33.702 | 181 | 109 | 4 | 31 | 206 | 21 | 195 | 1.40e-24 | 101 |
Find 75 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAATTGATTGAGTTAATTA+AGG | 0.180674 | 6.1:-53221794 | MS.gene97911:CDS |
ATGCTATGGAAGCTTTATTT+TGG | 0.193678 | 6.1:-53229297 | MS.gene97911:CDS |
TCATGATTTCTGTGTGAAAA+TGG | 0.275744 | 6.1:-53229398 | MS.gene97911:CDS |
CTCAGGCTTCAACTCGGATT+TGG | 0.289643 | 6.1:+53222113 | None:intergenic |
ATCAATTTCTTAGCTTTCAA+TGG | 0.324723 | 6.1:+53221808 | None:intergenic |
ACAGGTAGTTTGTGATCATT+AGG | 0.338370 | 6.1:+53229478 | None:intergenic |
TTATTCTAAGTGCTATCTAA+TGG | 0.341746 | 6.1:-53229233 | MS.gene97911:CDS |
TTGGTTGATTGTGATGTCTT+TGG | 0.342407 | 6.1:+53229546 | None:intergenic |
ATATTGCGCCAACCATTCTT+TGG | 0.350196 | 6.1:-53222150 | MS.gene97911:CDS |
AAATTGATTGAGTTAATTAA+GGG | 0.366752 | 6.1:-53221793 | MS.gene97911:CDS |
TTGAAAAGTTGGACAAGATA+AGG | 0.384867 | 6.1:-53221981 | MS.gene97911:CDS |
CTTGAGCCACTTAAGATTCA+AGG | 0.397271 | 6.1:-53222177 | MS.gene97911:CDS |
ATTAAATCAGTAACACATAA+TGG | 0.402226 | 6.1:+53222075 | None:intergenic |
GAAAGAGTTGGCACAATTGA+TGG | 0.410805 | 6.1:-53221899 | MS.gene97911:CDS |
AGTTTGTGATCATTAGGAAT+TGG | 0.416386 | 6.1:+53229484 | None:intergenic |
TATTCTAAGTGCTATCTAAT+GGG | 0.420298 | 6.1:-53229232 | MS.gene97911:CDS |
GGAAGTGTTGGGTCAGATGA+AGG | 0.423882 | 6.1:+53229583 | None:intergenic |
GAGATGGTGGTGAAGTTTGA+TGG | 0.432548 | 6.1:+53229692 | None:intergenic |
TGCTGCAGGTAAACGGTGCT+CGG | 0.433036 | 6.1:+53229327 | None:intergenic |
ATTAACCCTTGAATCTTAAG+TGG | 0.436258 | 6.1:+53222171 | None:intergenic |
GGCACAATTGATGGAGGAAA+AGG | 0.437092 | 6.1:-53221890 | MS.gene97911:CDS |
TGAAAAGTTGGACAAGATAA+GGG | 0.442396 | 6.1:-53221980 | MS.gene97911:CDS |
CATCATATGCTGCAGGTAAA+CGG | 0.447464 | 6.1:+53229320 | None:intergenic |
GGAAGGATTTGATCATTCTC+AGG | 0.449564 | 6.1:+53222096 | None:intergenic |
TGATCACGGTCTGCACCAAT+TGG | 0.451844 | 6.1:+53222036 | None:intergenic |
TCATTAGGAATTGGTTTGTT+GGG | 0.454181 | 6.1:+53229493 | None:intergenic |
TAAACGAGTGATTGTGTTGT+TGG | 0.456601 | 6.1:+53229627 | None:intergenic |
ATCATTAGGAATTGGTTTGT+TGG | 0.457225 | 6.1:+53229492 | None:intergenic |
TAGGAATTGGTTTGTTGGGT+AGG | 0.457808 | 6.1:+53229497 | None:intergenic |
GAAGTGTTGGGTCAGATGAA+GGG | 0.468099 | 6.1:+53229584 | None:intergenic |
GTGAAAGACTTTGATGAAGA+TGG | 0.468586 | 6.1:-53221856 | MS.gene97911:CDS |
GTGAAAATGGTTGATGAGAT+TGG | 0.471022 | 6.1:-53229385 | MS.gene97911:CDS |
AGGAGATTAAGATGTTTGTA+AGG | 0.475110 | 6.1:+53229658 | None:intergenic |
GCTACCATTGCTTACCATGC+AGG | 0.480177 | 6.1:-53229196 | MS.gene97911:intron |
TCTTTCTCACGATCTACTAC+TGG | 0.487514 | 6.1:+53221916 | None:intergenic |
TCTTTGGTGAGAACTGTGAT+TGG | 0.488773 | 6.1:+53229562 | None:intergenic |
AAAGTGTTGGTGAGTGGAAA+TGG | 0.494200 | 6.1:-53221946 | MS.gene97911:CDS |
GGATTCATCTTAGCAAGTGC+TGG | 0.508383 | 6.1:-53229433 | MS.gene97911:CDS |
ACAAGATAAGGGACCTTGGA+TGG | 0.513521 | 6.1:-53221969 | MS.gene97911:CDS |
TGGGAGTTAGCACTTCCAAT+TGG | 0.514927 | 6.1:-53222051 | MS.gene97911:CDS |
TTGCGCCAACCATTCTTTGG+TGG | 0.516163 | 6.1:-53222147 | MS.gene97911:CDS |
AGAACTGTGATTGGAAGTGT+TGG | 0.517776 | 6.1:+53229571 | None:intergenic |
AAGTGTTGGGTCAGATGAAG+GGG | 0.519565 | 6.1:+53229585 | None:intergenic |
CACACAGAAATCATGAAACA+TGG | 0.523968 | 6.1:+53229405 | None:intergenic |
GCTGCAGGTAAACGGTGCTC+GGG | 0.534675 | 6.1:+53229328 | None:intergenic |
TCAACCAAACAAACAAAACA+TGG | 0.538818 | 6.1:-53229531 | MS.gene97911:CDS |
TTGAGCCACTTAAGATTCAA+GGG | 0.548071 | 6.1:-53222176 | MS.gene97911:CDS |
TGTTGGTGAGTGGAAATGGT+GGG | 0.564497 | 6.1:-53221942 | MS.gene97911:CDS |
ATAGCATCATCATATGCTGC+AGG | 0.567042 | 6.1:+53229313 | None:intergenic |
TGCAGCATATGATGATGCTA+TGG | 0.567312 | 6.1:-53229311 | MS.gene97911:CDS |
GCACAATTGATGGAGGAAAA+GGG | 0.567361 | 6.1:-53221889 | MS.gene97911:CDS |
ATCATTCTCAGGCTTCAACT+CGG | 0.572263 | 6.1:+53222107 | None:intergenic |
GTGTTGGTGAGTGGAAATGG+TGG | 0.575500 | 6.1:-53221943 | MS.gene97911:CDS |
TTGGACAAGATAAGGGACCT+TGG | 0.576704 | 6.1:-53221973 | MS.gene97911:CDS |
TAAGGATCAATGATTTGAGA+TGG | 0.583455 | 6.1:+53229676 | None:intergenic |
TTGTGTTGTTGGAGTTTCGA+AGG | 0.585794 | 6.1:+53229638 | None:intergenic |
AATCAGTAACACATAATGGA+AGG | 0.585936 | 6.1:+53222079 | None:intergenic |
TATGTGTTACTGATTTAATG+TGG | 0.587589 | 6.1:-53222071 | MS.gene97911:CDS |
CCATGAAAGAAAACAATGAC+AGG | 0.589515 | 6.1:+53229460 | None:intergenic |
AGTAGATCGTGAGAAAGAGT+TGG | 0.597832 | 6.1:-53221911 | MS.gene97911:CDS |
ATGTGTTACTGATTTAATGT+GGG | 0.601314 | 6.1:-53222070 | MS.gene97911:CDS |
TCACCAACACTTTCCATCCA+AGG | 0.607784 | 6.1:+53221956 | None:intergenic |
GTTGGTGAGTGGAAATGGTG+GGG | 0.613123 | 6.1:-53221941 | MS.gene97911:CDS |
AGTGTTGGGTCAGATGAAGG+GGG | 0.615911 | 6.1:+53229586 | None:intergenic |
ACGAGCAGTAGAAGTTGTGA+AGG | 0.625964 | 6.1:-53222202 | MS.gene97911:CDS |
GGATCAATGATTTGAGATGG+TGG | 0.629203 | 6.1:+53229679 | None:intergenic |
CTAACCTGCATGGTAAGCAA+TGG | 0.629972 | 6.1:+53229192 | None:intergenic |
GAACTGTGATTGGAAGTGTT+GGG | 0.631835 | 6.1:+53229572 | None:intergenic |
TATTGCAAAACTCATGATCA+CGG | 0.633224 | 6.1:+53222022 | None:intergenic |
AACGGTGCTCGGGTGCAAGA+CGG | 0.634589 | 6.1:+53229338 | None:intergenic |
CAACCAAACAAACAAAACAT+GGG | 0.639568 | 6.1:-53229530 | MS.gene97911:CDS |
GGATGGAAAGTGTTGGTGAG+TGG | 0.656579 | 6.1:-53221952 | MS.gene97911:CDS |
AGAGTTGGCACAATTGATGG+AGG | 0.662804 | 6.1:-53221896 | MS.gene97911:CDS |
TAAGGAATAGTGAAGATGAG+TGG | 0.687511 | 6.1:-53229273 | MS.gene97911:CDS |
GGACCTTGGATGGAAAGTGT+TGG | 0.707859 | 6.1:-53221959 | MS.gene97911:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 53221780 | 53229728 | 53221780 | ID=MS.gene97911 |
chr6.1 | mRNA | 53221780 | 53229728 | 53221780 | ID=MS.gene97911.t1;Parent=MS.gene97911 |
chr6.1 | exon | 53229197 | 53229728 | 53229197 | ID=MS.gene97911.t1.exon1;Parent=MS.gene97911.t1 |
chr6.1 | CDS | 53229197 | 53229728 | 53229197 | ID=cds.MS.gene97911.t1;Parent=MS.gene97911.t1 |
chr6.1 | exon | 53221780 | 53222228 | 53221780 | ID=MS.gene97911.t1.exon2;Parent=MS.gene97911.t1 |
chr6.1 | CDS | 53221780 | 53222228 | 53221780 | ID=cds.MS.gene97911.t1;Parent=MS.gene97911.t1 |
Gene Sequence |
Protein sequence |