AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene97913

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97913.t1 MTR_6g464320 87.234 329 41 1 1 328 1 329 0.0 595
MS.gene97913.t1 MTR_6g464280 89.571 326 32 2 1 325 1 325 0.0 592
MS.gene97913.t1 MTR_6g464510 69.018 326 96 4 2 325 5 327 2.89e-160 451
MS.gene97913.t1 MTR_6g464120 56.688 314 131 4 4 316 8 317 2.81e-116 346
MS.gene97913.t1 MTR_1g102160 53.333 330 143 5 1 324 1 325 6.45e-116 338
MS.gene97913.t1 MTR_1g102170 53.674 313 137 3 13 323 31 337 2.81e-115 337
MS.gene97913.t1 MTR_0007s0520 49.235 327 148 5 2 325 14 325 1.15e-100 299
MS.gene97913.t1 MTR_8g035520 48.000 325 154 5 8 325 9 325 9.51e-97 290
MS.gene97913.t1 MTR_8g035540 47.368 323 151 6 13 324 2 316 4.14e-95 285
MS.gene97913.t1 MTR_8g035500 35.737 319 192 5 13 324 5 317 7.01e-74 231
MS.gene97913.t1 MTR_1g111280 37.580 314 164 7 32 325 42 343 3.04e-56 186
MS.gene97913.t1 MTR_7g406880 37.455 275 151 7 35 293 44 313 4.59e-53 178
MS.gene97913.t1 MTR_0007s0480 53.216 171 76 3 158 325 2 171 7.16e-52 169
MS.gene97913.t1 MTR_6g065430 39.113 248 140 5 47 293 58 295 2.84e-49 167
MS.gene97913.t1 MTR_6g065400 33.548 310 190 6 25 325 32 334 3.10e-46 160
MS.gene97913.t1 MTR_4g050140 33.333 318 191 10 20 327 12 318 6.26e-45 156
MS.gene97913.t1 MTR_6g065110 33.003 303 186 6 31 325 42 335 1.48e-44 155
MS.gene97913.t1 MTR_6g065370 32.903 310 192 6 25 325 32 334 2.09e-44 155
MS.gene97913.t1 MTR_6g065120 34.405 311 187 7 25 325 33 336 5.10e-44 154
MS.gene97913.t1 MTR_7g107040 37.692 260 135 6 80 324 69 316 3.98e-43 151
MS.gene97913.t1 MTR_1g012430 35.409 257 146 7 39 290 29 270 1.59e-42 149
MS.gene97913.t1 MTR_6g065270 36.667 240 137 5 25 252 30 266 1.74e-41 147
MS.gene97913.t1 MTR_7g056207 33.670 297 177 8 39 328 67 350 2.09e-40 145
MS.gene97913.t1 MTR_4g086510 34.586 266 153 8 39 295 35 288 9.45e-40 142
MS.gene97913.t1 MTR_1g089310 38.559 236 127 7 60 293 89 308 1.28e-37 137
MS.gene97913.t1 MTR_1g089310 38.559 236 127 7 60 293 105 324 1.64e-37 137
MS.gene97913.t1 MTR_7g093950 33.725 255 147 6 53 293 68 314 3.37e-36 134
MS.gene97913.t1 MTR_3g101420 31.420 331 192 9 9 325 6 315 5.07e-36 132
MS.gene97913.t1 MTR_6g065340 31.752 274 156 6 25 290 43 293 5.15e-36 133
MS.gene97913.t1 MTR_4g086480 32.660 297 172 11 39 324 39 318 8.57e-36 132
MS.gene97913.t1 MTR_4g086470 33.463 257 151 8 39 290 38 279 2.76e-35 130
MS.gene97913.t1 MTR_1g082210 31.667 240 134 6 24 245 37 264 4.49e-32 122
MS.gene97913.t1 MTR_4g086540 29.450 309 169 7 28 326 34 303 1.71e-31 120
MS.gene97913.t1 MTR_3g012440 32.627 236 145 6 63 293 74 300 8.46e-30 116
MS.gene97913.t1 MTR_5g005920 28.065 310 183 12 33 324 43 330 2.04e-28 112
MS.gene97913.t1 MTR_1g105020 32.000 300 176 12 41 327 38 322 9.79e-28 110
MS.gene97913.t1 MTR_3g450680 28.254 315 195 10 27 324 31 331 2.25e-26 107
MS.gene97913.t1 MTR_5g005850 29.467 319 186 14 27 324 28 328 8.59e-25 102
MS.gene97913.t1 MTR_5g005900 29.348 276 161 12 22 279 18 277 3.29e-24 101
MS.gene97913.t1 MTR_7g051020 30.476 315 186 12 27 324 27 325 4.80e-23 97.8
MS.gene97913.t1 MTR_6g022710 29.954 217 117 4 65 247 146 361 7.10e-23 99.0
MS.gene97913.t1 MTR_8g040860 26.899 316 199 12 25 324 29 328 2.37e-22 95.9
MS.gene97913.t1 MTR_1g104930 30.545 275 163 10 27 290 27 284 1.40e-21 93.6
MS.gene97913.t1 MTR_1g104933 37.037 162 84 4 49 201 46 198 7.69e-19 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97913.t1 AT5G62180 50.156 321 155 4 8 324 4 323 1.14e-110 325
MS.gene97913.t1 AT2G45600 43.252 326 162 6 8 324 4 315 7.30e-87 264
MS.gene97913.t1 AT2G45610 38.957 326 184 5 8 325 6 324 9.90e-77 238
MS.gene97913.t1 AT5G16080 37.313 268 146 7 35 293 51 305 2.59e-49 168
MS.gene97913.t1 AT1G68620 35.082 305 182 6 2 303 15 306 1.41e-48 166
MS.gene97913.t1 AT5G23530 33.981 309 184 7 22 324 32 326 6.01e-45 156
MS.gene97913.t1 AT5G06570 35.616 292 163 9 47 325 47 326 4.59e-39 141
MS.gene97913.t1 AT5G06570 35.616 292 163 9 47 325 47 326 4.59e-39 141
MS.gene97913.t1 AT5G06570 35.616 292 163 9 47 325 62 341 9.56e-39 140
MS.gene97913.t1 AT5G06570 35.616 292 163 9 47 325 62 341 9.56e-39 140
MS.gene97913.t1 AT1G19190 32.472 271 165 7 25 290 18 275 2.21e-37 136
MS.gene97913.t1 AT5G27320 33.218 289 160 8 22 293 35 307 6.55e-36 133
MS.gene97913.t1 AT1G49640 37.126 167 100 2 40 205 34 196 1.98e-35 131
MS.gene97913.t1 AT3G63010 34.711 242 138 6 54 293 86 309 1.81e-34 129
MS.gene97913.t1 AT3G48700 38.953 172 96 3 39 201 32 203 3.50e-33 125
MS.gene97913.t1 AT1G47480 29.252 294 186 10 39 328 35 310 3.68e-32 122
MS.gene97913.t1 AT1G49660 39.181 171 94 4 40 204 33 199 6.61e-32 122
MS.gene97913.t1 AT3G48690 35.359 181 108 4 28 201 21 199 2.02e-30 117
MS.gene97913.t1 AT1G49650 36.957 184 106 5 26 203 74 253 5.53e-30 117
MS.gene97913.t1 AT3G05120 31.250 288 173 7 20 293 33 309 8.03e-30 116
MS.gene97913.t1 AT2G03550 34.444 180 104 4 28 201 21 192 6.84e-27 108
MS.gene97913.t1 AT5G14310 29.289 239 124 3 70 263 141 379 1.78e-26 109
MS.gene97913.t1 AT3G27320 29.032 217 112 5 71 247 125 339 4.65e-23 99.4
MS.gene97913.t1 AT3G27320 29.032 217 112 5 71 247 157 371 6.11e-23 99.4

Find 73 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGTAGAAGTTTGTTATTT+TGG 0.275515 6.1:+53269316 None:intergenic
TTGGTTGATGTTAAGATCTT+TGG 0.317136 6.1:+53269392 None:intergenic
TTCCATGGAAGAAAACAATA+AGG 0.321528 6.1:+53269295 None:intergenic
TGGAAGCATTGAGTTTGATT+AGG 0.366794 6.1:-53269128 MS.gene97913:CDS
AGAATAATCGAAGCCATGTT+TGG 0.408029 6.1:+53269364 None:intergenic
TATCAACGGTGGGGATCTAT+TGG 0.408604 6.1:-53268734 MS.gene97913:CDS
TCCATGGAAGAAAACAATAA+GGG 0.413790 6.1:+53269296 None:intergenic
TTAAGATCTTTGGTTAGAAC+AGG 0.420005 6.1:+53269402 None:intergenic
GCCGCTGGTAGCCGGTGCTC+CGG 0.427016 6.1:+53269165 None:intergenic
ATCAACCCTTTGATCTTCAA+TGG 0.434257 6.1:+53268976 None:intergenic
GTGTGTTAGTGATTTGTGTT+GGG 0.440638 6.1:-53268875 MS.gene97913:CDS
CATCATATGCCGCTGGTAGC+CGG 0.442477 6.1:+53269157 None:intergenic
TTGGATAAGATAAAGGATCA+TGG 0.456613 6.1:-53268775 MS.gene97913:CDS
GAAGCCATGTTTGGTTTGAT+TGG 0.466485 6.1:+53269373 None:intergenic
TGTGTGTTAGTGATTTGTGT+TGG 0.479150 6.1:-53268876 MS.gene97913:CDS
TCAACATCATTCCCAACCGT+TGG 0.482237 6.1:+53268805 None:intergenic
TAGTGATTTGTGTTGGGAGT+TGG 0.482769 6.1:-53268869 MS.gene97913:CDS
TGAGGCGACAACTGCTTCTA+CGG 0.486784 6.1:+53269206 None:intergenic
TTTCTAATGGGAAATAGTGC+TGG 0.493645 6.1:-53269057 MS.gene97913:CDS
ATTTCGAGTGAGTGTGTCGT+TGG 0.495284 6.1:+53269467 None:intergenic
GAAGGGTGTGGAGGTTGTCA+AGG 0.497086 6.1:-53268674 MS.gene97913:CDS
ATCGCCTCGCACCGGAGCAC+CGG 0.497130 6.1:-53269176 MS.gene97913:CDS
TTTGAGCCATTGAAGATCAA+AGG 0.499710 6.1:-53268982 MS.gene97913:CDS
TTGAGCCATTGAAGATCAAA+GGG 0.500086 6.1:-53268981 MS.gene97913:CDS
TTTCGAGTGAGTGTGTCGTT+GGG 0.500130 6.1:+53269468 None:intergenic
TAATGAGTTGGTGCAATTGA+TGG 0.508097 6.1:-53268701 MS.gene97913:CDS
GTGTGTCGTTGGGATTGTGT+TGG 0.512910 6.1:+53269478 None:intergenic
AGTATTGCAATCCAACGGTT+GGG 0.522243 6.1:-53268816 MS.gene97913:CDS
CAACTCAGACTCATACCTCT+TGG 0.523552 6.1:+53268927 None:intergenic
GAAATTTATTGAATTAGTGA+AGG 0.523975 6.1:-53268596 MS.gene97913:CDS
TGATCACGATCAACACCAAT+GGG 0.527278 6.1:+53268841 None:intergenic
ATTGATGGAGGAGAAGGGTG+TGG 0.536486 6.1:-53268686 MS.gene97913:CDS
CTACAATGAAGCCACTTCCA+TGG 0.538432 6.1:+53269280 None:intergenic
TGGATAAGATAAAGGATCAT+GGG 0.539321 6.1:-53268774 MS.gene97913:CDS
TGGGAGTTGGCATTACCCAT+TGG 0.544771 6.1:-53268856 MS.gene97913:CDS
GGAAGAGAAGTGTCTAATGA+AGG 0.545290 6.1:+53269423 None:intergenic
CTAACACACAAAGGAAAATG+AGG 0.549229 6.1:+53268889 None:intergenic
GGTACAATTGCTTATCATGC+AGG 0.551466 6.1:-53269033 MS.gene97913:CDS
GAGTATTGCAATCCAACGGT+TGG 0.555439 6.1:-53268817 MS.gene97913:CDS
AAATTTATTGAATTAGTGAA+GGG 0.555912 6.1:-53268595 MS.gene97913:CDS
GTAGCCGGTGCTCCGGTGCG+AGG 0.564152 6.1:+53269172 None:intergenic
GATAAAGGATCATGGGTGGA+AGG 0.566939 6.1:-53268767 MS.gene97913:CDS
AGCGGCATATGATGATGCTA+TGG 0.574650 6.1:-53269148 MS.gene97913:CDS
TGGTAAGGATCATTGATGGC+TGG 0.578886 6.1:+53269513 None:intergenic
TTAGGTCAAGTGATGATGAA+TGG 0.579905 6.1:-53269110 MS.gene97913:CDS
AGAAGTGTCTAATGAAGGTG+AGG 0.582650 6.1:+53269428 None:intergenic
TATTAGTGAGTATCAACGGT+GGG 0.583102 6.1:-53268744 MS.gene97913:CDS
ATGATCACGATCAACACCAA+TGG 0.589336 6.1:+53268840 None:intergenic
GGTTGATCGTGCTAATGAGT+TGG 0.592417 6.1:-53268713 MS.gene97913:CDS
GTGCAATTGATGGAGGAGAA+GGG 0.602437 6.1:-53268691 MS.gene97913:CDS
TAAGGATCATTGATGGCTGG+TGG 0.603435 6.1:+53269516 None:intergenic
GGTGCAATTGATGGAGGAGA+AGG 0.607957 6.1:-53268692 MS.gene97913:CDS
CTAATGGGAAATAGTGCTGG+AGG 0.608556 6.1:-53269054 MS.gene97913:CDS
ACCGGAGCACCGGCTACCAG+CGG 0.609410 6.1:-53269166 MS.gene97913:CDS
GGATCATTGATGGCTGGTGG+TGG 0.614626 6.1:+53269519 None:intergenic
ATAGCATCATCATATGCCGC+TGG 0.614736 6.1:+53269150 None:intergenic
CCATGGAAGAAAACAATAAG+GGG 0.615760 6.1:+53269297 None:intergenic
AGTCGATTATCGCCTCGCAC+CGG 0.617431 6.1:-53269184 MS.gene97913:CDS
TCAACCAATCAAACCAAACA+TGG 0.620670 6.1:-53269377 MS.gene97913:CDS
CACAAATCACTAACACACAA+AGG 0.622904 6.1:+53268880 None:intergenic
GTATTGGTAAGGATCATTGA+TGG 0.630210 6.1:+53269509 None:intergenic
GATGGAGGAGAAGGGTGTGG+AGG 0.638171 6.1:-53268683 MS.gene97913:CDS
AAGGTATTAGTGAGTATCAA+CGG 0.648175 6.1:-53268748 MS.gene97913:CDS
TGGCAAAGTTTGATTAGACA+TGG 0.655064 6.1:+53269539 None:intergenic
ATAAGATAAAGGATCATGGG+TGG 0.660965 6.1:-53268771 MS.gene97913:CDS
TCATGAGTATTGCAATCCAA+CGG 0.662201 6.1:-53268821 MS.gene97913:CDS
TCTAATGAAGGTGAGGTGTG+TGG 0.664418 6.1:+53269435 None:intergenic
ATGACTCTAATCATTGAACA+TGG 0.670584 6.1:+53268564 None:intergenic
ATTAGTGAGTATCAACGGTG+GGG 0.683373 6.1:-53268743 MS.gene97913:CDS
AAAATTGTGGAATATTGTGG+AGG 0.687404 6.1:+53269248 None:intergenic
TGAGTTGGTGCAATTGATGG+AGG 0.712978 6.1:-53268698 MS.gene97913:CDS
TGCGAGGCGATAATCGACTG+AGG 0.721068 6.1:+53269188 None:intergenic
GTATTAGTGAGTATCAACGG+TGG 0.735591 6.1:-53268745 MS.gene97913:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATTGAATTAGTGAA+GGG - chr6.1:53269512-53269531 MS.gene97913:CDS 15.0%
!!! TTTTCAAAATGTTTTCTAAT+GGG - chr6.1:53269038-53269057 MS.gene97913:CDS 15.0%
!! GAAATTTATTGAATTAGTGA+AGG - chr6.1:53269511-53269530 MS.gene97913:CDS 20.0%
!! TGAAAAATTGGATAAGATAA+AGG - chr6.1:53269325-53269344 MS.gene97913:CDS 20.0%
!!! ATAAATTTCTTTGCTTTTGA+TGG + chr6.1:53269500-53269519 None:intergenic 20.0%
!!! CTTTTCAAAATGTTTTCTAA+TGG - chr6.1:53269037-53269056 MS.gene97913:CDS 20.0%
! ACAAAAATTGTGGAATATTG+TGG + chr6.1:53268865-53268884 None:intergenic 25.0%
!! GAATGATGTTGATGAAAAAT+TGG - chr6.1:53269313-53269332 MS.gene97913:CDS 25.0%
!!! TTTGAAGTTGTTGCTTTTTT+AGG + chr6.1:53268771-53268790 None:intergenic 25.0%
AAAATTGTGGAATATTGTGG+AGG + chr6.1:53268862-53268881 None:intergenic 30.0%
TCCATGGAAGAAAACAATAA+GGG + chr6.1:53268814-53268833 None:intergenic 30.0%
TGGATAAGATAAAGGATCAT+GGG - chr6.1:53269333-53269352 MS.gene97913:CDS 30.0%
TTAAGATCTTTGGTTAGAAC+AGG + chr6.1:53268708-53268727 None:intergenic 30.0%
TTCCATGGAAGAAAACAATA+AGG + chr6.1:53268815-53268834 None:intergenic 30.0%
TTGGATAAGATAAAGGATCA+TGG - chr6.1:53269332-53269351 MS.gene97913:CDS 30.0%
! AAGGTATTAGTGAGTATCAA+CGG - chr6.1:53269359-53269378 MS.gene97913:CDS 30.0%
! TTCAAGAAGATGGTTTTCAT+GGG - chr6.1:53269459-53269478 MS.gene97913:CDS 30.0%
! TTGGTTGATGTTAAGATCTT+TGG + chr6.1:53268718-53268737 None:intergenic 30.0%
! TTTCAAGAAGATGGTTTTCA+TGG - chr6.1:53269458-53269477 MS.gene97913:CDS 30.0%
!!! ATATTGCGTCAACCATTTTT+TGG - chr6.1:53269152-53269171 MS.gene97913:CDS 30.0%
AGAATAATCGAAGCCATGTT+TGG + chr6.1:53268746-53268765 None:intergenic 35.0%
ATAAGATAAAGGATCATGGG+TGG - chr6.1:53269336-53269355 MS.gene97913:CDS 35.0%
ATCAACCCTTTGATCTTCAA+TGG + chr6.1:53269134-53269153 None:intergenic 35.0%
CACAAATCACTAACACACAA+AGG + chr6.1:53269230-53269249 None:intergenic 35.0%
CCATGGAAGAAAACAATAAG+GGG + chr6.1:53268813-53268832 None:intergenic 35.0%
CCATTTCAGCACAAAAATTG+TGG + chr6.1:53268875-53268894 None:intergenic 35.0%
CTAACACACAAAGGAAAATG+AGG + chr6.1:53269221-53269240 None:intergenic 35.0%
TATTAGTGAGTATCAACGGT+GGG - chr6.1:53269363-53269382 MS.gene97913:CDS 35.0%
TCAACCAATCAAACCAAACA+TGG - chr6.1:53268730-53268749 MS.gene97913:CDS 35.0%
TTGAGCCATTGAAGATCAAA+GGG - chr6.1:53269126-53269145 MS.gene97913:CDS 35.0%
TTTCTAATGGGAAATAGTGC+TGG - chr6.1:53269050-53269069 MS.gene97913:CDS 35.0%
TTTGAGCCATTGAAGATCAA+AGG - chr6.1:53269125-53269144 MS.gene97913:CDS 35.0%
! ATTGTTTTCTTCCATGGAAG+TGG - chr6.1:53268816-53268835 MS.gene97913:CDS 35.0%
! CAATTTTTGTGCTGAAATGG+CGG - chr6.1:53268875-53268894 MS.gene97913:CDS 35.0%
! CCACAATTTTTGTGCTGAAA+TGG - chr6.1:53268872-53268891 MS.gene97913:CDS 35.0%
! GTATTGGTAAGGATCATTGA+TGG + chr6.1:53268601-53268620 None:intergenic 35.0%
! GTGTGTTAGTGATTTGTGTT+GGG - chr6.1:53269232-53269251 MS.gene97913:CDS 35.0%
! TCAAGAAGATGGTTTTCATG+GGG - chr6.1:53269460-53269479 MS.gene97913:CDS 35.0%
! TCATGAGTATTGCAATCCAA+CGG - chr6.1:53269286-53269305 MS.gene97913:CDS 35.0%
! TGTGTGTTAGTGATTTGTGT+TGG - chr6.1:53269231-53269250 MS.gene97913:CDS 35.0%
! TTAGGTCAAGTGATGATGAA+TGG - chr6.1:53268997-53269016 MS.gene97913:CDS 35.0%
!! GTCAAGGATTTTCAAGAAGA+TGG - chr6.1:53269449-53269468 MS.gene97913:CDS 35.0%
!! TAATGAGTTGGTGCAATTGA+TGG - chr6.1:53269406-53269425 MS.gene97913:CDS 35.0%
!! TGGAAGCATTGAGTTTGATT+AGG - chr6.1:53268979-53268998 MS.gene97913:CDS 35.0%
!!! GGGGTAGAAGTTTGTTATTT+TGG + chr6.1:53268794-53268813 None:intergenic 35.0%
!!! TGGATTTTGAGGTATTGGTA+AGG + chr6.1:53268612-53268631 None:intergenic 35.0%
!!! TGTGTTGGATTTTGAGGTAT+TGG + chr6.1:53268617-53268636 None:intergenic 35.0%
AGTATTGCAATCCAACGGTT+GGG - chr6.1:53269291-53269310 MS.gene97913:CDS 40.0%
ATGATCACGATCAACACCAA+TGG + chr6.1:53269270-53269289 None:intergenic 40.0%
ATTAGTGAGTATCAACGGTG+GGG - chr6.1:53269364-53269383 MS.gene97913:CDS 40.0%
GGTACAATTGCTTATCATGC+AGG - chr6.1:53269074-53269093 MS.gene97913:CDS 40.0%
GTATTAGTGAGTATCAACGG+TGG - chr6.1:53269362-53269381 MS.gene97913:CDS 40.0%
TGATCACGATCAACACCAAT+GGG + chr6.1:53269269-53269288 None:intergenic 40.0%
! CCCCTTATTGTTTTCTTCCA+TGG - chr6.1:53268810-53268829 MS.gene97913:CDS 40.0%
! TAGTGATTTGTGTTGGGAGT+TGG - chr6.1:53269238-53269257 MS.gene97913:CDS 40.0%
! TGGGATTGTGTTGGATTTTG+AGG + chr6.1:53268623-53268642 None:intergenic 40.0%
!! AGAAGTGTCTAATGAAGGTG+AGG + chr6.1:53268682-53268701 None:intergenic 40.0%
!! GAAGCCATGTTTGGTTTGAT+TGG + chr6.1:53268737-53268756 None:intergenic 40.0%
!! GGAAGAGAAGTGTCTAATGA+AGG + chr6.1:53268687-53268706 None:intergenic 40.0%
!!! TGCGTCAACCATTTTTTGGT+GGG - chr6.1:53269156-53269175 MS.gene97913:CDS 40.0%
!!! TTGCGTCAACCATTTTTTGG+TGG - chr6.1:53269155-53269174 MS.gene97913:CDS 40.0%
ATAGCATCATCATATGCCGC+TGG + chr6.1:53268960-53268979 None:intergenic 45.0%
CAACTCAGACTCATACCTCT+TGG + chr6.1:53269183-53269202 None:intergenic 45.0%
CTACAATGAAGCCACTTCCA+TGG + chr6.1:53268830-53268849 None:intergenic 45.0%
CTCTTGGTCCCACCAAAAAA+TGG + chr6.1:53269167-53269186 None:intergenic 45.0%
GATAAAGGATCATGGGTGGA+AGG - chr6.1:53269340-53269359 MS.gene97913:CDS 45.0%
GGTTGATCGTGCTAATGAGT+TGG - chr6.1:53269394-53269413 MS.gene97913:CDS 45.0%
GTGCAATTGATGGAGGAGAA+GGG - chr6.1:53269416-53269435 MS.gene97913:CDS 45.0%
TATCAACGGTGGGGATCTAT+TGG - chr6.1:53269373-53269392 MS.gene97913:CDS 45.0%
TCAACATCATTCCCAACCGT+TGG + chr6.1:53269305-53269324 None:intergenic 45.0%
TCTAATGAAGGTGAGGTGTG+TGG + chr6.1:53268675-53268694 None:intergenic 45.0%
! AGCGGCATATGATGATGCTA+TGG - chr6.1:53268959-53268978 MS.gene97913:CDS 45.0%
! ATTTCGAGTGAGTGTGTCGT+TGG + chr6.1:53268643-53268662 None:intergenic 45.0%
! CTAATGGGAAATAGTGCTGG+AGG - chr6.1:53269053-53269072 MS.gene97913:CDS 45.0%
! GAGTATTGCAATCCAACGGT+TGG - chr6.1:53269290-53269309 MS.gene97913:CDS 45.0%
! TAAGGATCATTGATGGCTGG+TGG + chr6.1:53268594-53268613 None:intergenic 45.0%
! TGGTAAGGATCATTGATGGC+TGG + chr6.1:53268597-53268616 None:intergenic 45.0%
! TTTCGAGTGAGTGTGTCGTT+GGG + chr6.1:53268642-53268661 None:intergenic 45.0%
!! TGAGTTGGTGCAATTGATGG+AGG - chr6.1:53269409-53269428 MS.gene97913:CDS 45.0%
!!! CATTTTTTGGTGGGACCAAG+AGG - chr6.1:53269165-53269184 MS.gene97913:CDS 45.0%
ATTGATGGAGGAGAAGGGTG+TGG - chr6.1:53269421-53269440 MS.gene97913:CDS 50.0%
GGTGCAATTGATGGAGGAGA+AGG - chr6.1:53269415-53269434 MS.gene97913:CDS 50.0%
TGAGGCGACAACTGCTTCTA+CGG + chr6.1:53268904-53268923 None:intergenic 50.0%
TGGGAGTTGGCATTACCCAT+TGG - chr6.1:53269251-53269270 MS.gene97913:CDS 50.0%
! GTGTGTCGTTGGGATTGTGT+TGG + chr6.1:53268632-53268651 None:intergenic 50.0%
AGTCGATTATCGCCTCGCAC+CGG - chr6.1:53268923-53268942 MS.gene97913:CDS 55.0%
CATCATATGCCGCTGGTAGC+CGG + chr6.1:53268953-53268972 None:intergenic 55.0%
TGCGAGGCGATAATCGACTG+AGG + chr6.1:53268922-53268941 None:intergenic 55.0%
! GAAGGGTGTGGAGGTTGTCA+AGG - chr6.1:53269433-53269452 MS.gene97913:CDS 55.0%
! GGATCATTGATGGCTGGTGG+TGG + chr6.1:53268591-53268610 None:intergenic 55.0%
! GATGGAGGAGAAGGGTGTGG+AGG - chr6.1:53269424-53269443 MS.gene97913:CDS 60.0%
ATCGCCTCGCACCGGAGCAC+CGG - chr6.1:53268931-53268950 MS.gene97913:CDS 70.0%
!! ACCGGAGCACCGGCTACCAG+CGG - chr6.1:53268941-53268960 MS.gene97913:CDS 70.0%
GCCGCTGGTAGCCGGTGCTC+CGG + chr6.1:53268945-53268964 None:intergenic 75.0%
GTAGCCGGTGCTCCGGTGCG+AGG + chr6.1:53268938-53268957 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 53268570 53269559 53268570 ID=MS.gene97913
chr6.1 mRNA 53268570 53269559 53268570 ID=MS.gene97913.t1;Parent=MS.gene97913
chr6.1 exon 53268570 53269559 53268570 ID=MS.gene97913.t1.exon1;Parent=MS.gene97913.t1
chr6.1 CDS 53268570 53269559 53268570 ID=cds.MS.gene97913.t1;Parent=MS.gene97913.t1
Gene Sequence

>MS.gene97913

ATGTCTAATCAAACTTTGCCACCACCAGCCATCAATGATCCTTACCAATACCTCAAAATCCAACACAATCCCAACGACACACTCACTCGAAATCTTGAAGATCCACACACCTCACCTTCATTAGACACTTCTCTTCCTGTTCTAACCAAAGATCTTAACATCAACCAATCAAACCAAACATGGCTTCGATTATTCTTACCTAAAAAAGCAACAACTTCAAACCAAAATAACAAACTTCTACCCCTTATTGTTTTCTTCCATGGAAGTGGCTTCATTGTAGCAAGTGCAGCCTCCACAATATTCCACAATTTTTGTGCTGAAATGGCGGACACCGTAGAAGCAGTTGTCGCCTCAGTCGATTATCGCCTCGCACCGGAGCACCGGCTACCAGCGGCATATGATGATGCTATGGAAGCATTGAGTTTGATTAGGTCAAGTGATGATGAATGGTTGACTAAATATGTTGACTTTTCAAAATGTTTTCTAATGGGAAATAGTGCTGGAGGTACAATTGCTTATCATGCAGGACTACGTGTAGTTGAAAAGATGAATGATTTTGAGCCATTGAAGATCAAAGGGTTGATATTGCGTCAACCATTTTTTGGTGGGACCAAGAGGTATGAGTCTGAGTTGAGACTTGAGAATGATCCTCATTTTCCTTTGTGTGTTAGTGATTTGTGTTGGGAGTTGGCATTACCCATTGGTGTTGATCGTGATCATGAGTATTGCAATCCAACGGTTGGGAATGATGTTGATGAAAAATTGGATAAGATAAAGGATCATGGGTGGAAGGTATTAGTGAGTATCAACGGTGGGGATCTATTGGTTGATCGTGCTAATGAGTTGGTGCAATTGATGGAGGAGAAGGGTGTGGAGGTTGTCAAGGATTTTCAAGAAGATGGTTTTCATGGGGTTGAATTTTCTGAGCCATCAAAAGCAAAGAAATTTATTGAATTAGTGAAGGGCTTCATTTCCATGTTCAATGATTAG
Protein sequence

>MS.gene97913.t1

MSNQTLPPPAINDPYQYLKIQHNPNDTLTRNLEDPHTSPSLDTSLPVLTKDLNINQSNQTWLRLFLPKKATTSNQNNKLLPLIVFFHGSGFIVASAASTIFHNFCAEMADTVEAVVASVDYRLAPEHRLPAAYDDAMEALSLIRSSDDEWLTKYVDFSKCFLMGNSAGGTIAYHAGLRVVEKMNDFEPLKIKGLILRQPFFGGTKRYESELRLENDPHFPLCVSDLCWELALPIGVDRDHEYCNPTVGNDVDEKLDKIKDHGWKVLVSINGGDLLVDRANELVQLMEEKGVEVVKDFQEDGFHGVEFSEPSKAKKFIELVKGFISMFND