AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene97915

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97915.t1 MTR_6g464280 96.615 325 11 0 1 325 1 325 0.0 649
MS.gene97915.t1 MTR_6g464320 84.848 330 49 1 1 329 1 330 0.0 580
MS.gene97915.t1 MTR_6g464510 68.502 327 96 5 2 325 5 327 1.14e-161 454
MS.gene97915.t1 MTR_1g102160 53.012 332 145 5 1 326 1 327 2.22e-116 339
MS.gene97915.t1 MTR_6g464120 54.777 314 136 5 7 319 12 320 1.51e-110 331
MS.gene97915.t1 MTR_1g102170 51.592 314 143 3 12 323 31 337 1.48e-108 320
MS.gene97915.t1 MTR_8g035520 49.102 334 154 5 2 328 4 328 3.05e-103 306
MS.gene97915.t1 MTR_0007s0520 50.325 308 145 4 22 326 24 326 3.17e-100 298
MS.gene97915.t1 MTR_8g035540 48.160 326 149 6 12 326 2 318 2.93e-98 293
MS.gene97915.t1 MTR_8g035500 37.188 320 187 5 12 324 5 317 3.91e-74 231
MS.gene97915.t1 MTR_6g065430 40.161 249 137 5 46 293 58 295 1.04e-53 179
MS.gene97915.t1 MTR_7g406880 39.350 277 144 9 34 293 44 313 5.33e-53 178
MS.gene97915.t1 MTR_6g065400 36.129 310 183 6 24 325 32 334 1.48e-52 176
MS.gene97915.t1 MTR_0007s0480 52.326 172 78 3 158 326 2 172 1.52e-52 171
MS.gene97915.t1 MTR_6g065120 36.334 311 182 6 24 325 33 336 6.11e-52 175
MS.gene97915.t1 MTR_1g111280 36.364 319 169 8 31 329 42 346 1.55e-51 174
MS.gene97915.t1 MTR_6g065110 35.099 302 184 5 30 326 42 336 3.70e-50 170
MS.gene97915.t1 MTR_6g065370 35.161 310 186 6 24 325 32 334 4.17e-50 170
MS.gene97915.t1 MTR_6g065270 36.331 278 159 5 24 290 30 300 1.47e-48 166
MS.gene97915.t1 MTR_4g050140 32.500 320 192 10 19 327 12 318 5.62e-42 148
MS.gene97915.t1 MTR_6g065340 34.672 274 149 6 24 290 43 293 6.54e-42 148
MS.gene97915.t1 MTR_4g086510 33.779 299 172 9 38 325 35 318 1.43e-41 147
MS.gene97915.t1 MTR_7g107040 36.187 257 143 6 80 324 69 316 2.54e-41 146
MS.gene97915.t1 MTR_1g012430 34.496 258 148 7 38 290 29 270 4.44e-40 143
MS.gene97915.t1 MTR_7g056207 32.660 297 178 9 38 325 67 350 5.25e-39 141
MS.gene97915.t1 MTR_4g086480 33.667 300 170 11 38 326 39 320 3.68e-36 133
MS.gene97915.t1 MTR_4g086470 34.496 258 148 8 38 290 38 279 1.67e-34 128
MS.gene97915.t1 MTR_1g089310 38.009 221 117 6 78 293 103 308 3.77e-34 128
MS.gene97915.t1 MTR_1g089310 38.009 221 117 6 78 293 119 324 5.31e-34 128
MS.gene97915.t1 MTR_3g101420 31.045 335 189 10 8 325 6 315 3.74e-33 125
MS.gene97915.t1 MTR_7g093950 34.156 243 143 5 62 293 78 314 9.96e-33 124
MS.gene97915.t1 MTR_1g082210 31.381 239 135 7 23 244 37 263 1.11e-30 119
MS.gene97915.t1 MTR_4g086540 29.373 303 176 7 27 325 34 302 9.40e-30 115
MS.gene97915.t1 MTR_3g012440 34.225 187 112 3 62 243 74 254 1.01e-28 113
MS.gene97915.t1 MTR_1g105020 35.437 206 119 5 40 237 38 237 3.61e-27 108
MS.gene97915.t1 MTR_3g450680 29.338 317 194 11 24 324 29 331 1.64e-26 107
MS.gene97915.t1 MTR_8g040860 27.586 319 194 12 24 324 29 328 7.21e-25 102
MS.gene97915.t1 MTR_5g005920 28.205 312 181 13 32 324 43 330 2.61e-24 101
MS.gene97915.t1 MTR_5g005850 27.900 319 192 13 26 324 28 328 8.24e-24 100
MS.gene97915.t1 MTR_6g022710 31.053 190 98 1 77 233 157 346 2.43e-23 100
MS.gene97915.t1 MTR_5g005900 29.060 234 139 8 21 237 18 241 1.80e-22 96.3
MS.gene97915.t1 MTR_7g051020 35.106 188 103 6 24 201 25 203 2.13e-19 87.8
MS.gene97915.t1 MTR_1g104930 35.404 161 89 3 48 201 48 200 7.34e-19 86.3
MS.gene97915.t1 MTR_1g104933 35.583 163 86 4 48 201 46 198 1.18e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97915.t1 AT5G62180 50.464 323 156 3 7 326 4 325 6.00e-116 338
MS.gene97915.t1 AT2G45600 44.277 332 155 6 7 326 4 317 5.76e-94 282
MS.gene97915.t1 AT2G45610 40.854 328 175 6 8 325 6 324 2.00e-79 245
MS.gene97915.t1 AT1G68620 37.333 300 171 7 34 328 46 333 9.20e-49 166
MS.gene97915.t1 AT5G16080 37.175 269 146 7 34 293 51 305 1.30e-48 166
MS.gene97915.t1 AT5G23530 34.304 309 184 7 21 324 32 326 3.34e-46 160
MS.gene97915.t1 AT1G19190 33.333 273 161 6 24 290 18 275 4.55e-38 138
MS.gene97915.t1 AT1G49640 38.788 165 97 3 39 203 34 194 1.44e-36 134
MS.gene97915.t1 AT5G06570 34.576 295 167 8 46 327 47 328 1.02e-35 132
MS.gene97915.t1 AT5G06570 34.576 295 167 8 46 327 47 328 1.02e-35 132
MS.gene97915.t1 AT5G06570 34.576 295 167 8 46 327 62 343 1.40e-35 132
MS.gene97915.t1 AT5G06570 34.576 295 167 8 46 327 62 343 1.40e-35 132
MS.gene97915.t1 AT3G48700 38.953 172 97 2 38 201 32 203 2.67e-34 128
MS.gene97915.t1 AT5G27320 34.615 234 125 7 23 240 37 258 4.16e-32 122
MS.gene97915.t1 AT1G47480 28.523 298 189 7 38 329 35 314 1.27e-31 120
MS.gene97915.t1 AT3G63010 38.690 168 95 3 78 244 104 264 3.68e-31 120
MS.gene97915.t1 AT1G49660 35.465 172 102 3 39 205 33 200 3.04e-30 117
MS.gene97915.t1 AT3G48690 35.135 185 104 4 27 201 21 199 5.04e-30 117
MS.gene97915.t1 AT1G49650 34.759 187 111 5 25 205 74 255 1.38e-28 114
MS.gene97915.t1 AT3G05120 32.245 245 142 6 17 244 27 264 1.81e-27 110
MS.gene97915.t1 AT5G14310 31.884 207 103 2 76 244 147 353 1.86e-25 106
MS.gene97915.t1 AT2G03550 32.778 180 108 3 27 201 21 192 2.12e-25 103
MS.gene97915.t1 AT3G27320 30.290 241 120 7 69 263 123 361 7.10e-24 101
MS.gene97915.t1 AT3G27320 30.290 241 120 7 69 263 155 393 9.21e-24 101

Find 76 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTCTTCCTTTGATGCTT+AGG 0.247342 6.1:-53293126 None:intergenic
CTCAATGAAGTTCTTTGCTT+TGG 0.272954 6.1:+53293163 None:intergenic
ATCATGAGTATTCCAATCTA+AGG 0.274329 6.1:-53293379 MS.gene97915:CDS
GTGGTAGTAGCTTGTTGTTT+AGG 0.299734 6.1:+53293873 None:intergenic
ATCTCTTCCTTTGATGCTTA+GGG 0.329295 6.1:-53293125 None:intergenic
TCCATTGGTTGATCGTAATA+AGG 0.354913 6.1:-53293276 MS.gene97915:CDS
ATCATTCCCAACCCTTAGAT+TGG 0.358675 6.1:+53293367 None:intergenic
TGGAAGCATTGAGTTTGATT+AGG 0.366794 6.1:-53293685 MS.gene97915:CDS
TGTGTTGAACTTTGAGGTAT+TGG 0.367683 6.1:+53294053 None:intergenic
TGTTTGGTTTGATTGGTTGA+TGG 0.372466 6.1:+53293940 None:intergenic
TTGGTTGATGGTGAGATCTT+TGG 0.375462 6.1:+53293952 None:intergenic
GGAATAATCTAAGCCATGTT+TGG 0.383776 6.1:+53293924 None:intergenic
CTTGAGCCGTTGAAAATTCA+AGG 0.398268 6.1:-53293539 MS.gene97915:CDS
GGTGAAATTGTTGGAGGATA+AGG 0.406784 6.1:-53293249 MS.gene97915:CDS
ATGAAGTTCTTTGCTTTGGA+TGG 0.409851 6.1:+53293167 None:intergenic
TAAGCCATGTTTGGTTTGAT+TGG 0.411255 6.1:+53293933 None:intergenic
TTGTGCTGAAATGGCGGATA+CGG 0.416654 6.1:-53293783 MS.gene97915:CDS
TAAGGAGTTGGTGAAATTGT+TGG 0.420609 6.1:-53293258 MS.gene97915:CDS
GTGAGATCTTTGGTTAGAAC+AGG 0.425005 6.1:+53293962 None:intergenic
GCCGCCGGTAGCCGGTGCTC+CGG 0.443546 6.1:+53293722 None:intergenic
CATCATATGCCGCCGGTAGC+CGG 0.451594 6.1:+53293714 None:intergenic
TGGGATTGTGTTGAACTTTG+AGG 0.458759 6.1:+53294047 None:intergenic
AGGGTGTTGGTGAGTATGAA+TGG 0.462381 6.1:-53293305 MS.gene97915:CDS
GTGAAATTGTTGGAGGATAA+GGG 0.467275 6.1:-53293248 MS.gene97915:CDS
TGATCACGGTCAACACCAAT+TGG 0.467482 6.1:+53293398 None:intergenic
AGTATTCCAATCTAAGGGTT+GGG 0.474229 6.1:-53293373 MS.gene97915:CDS
CGCACCGGAGCACCGGCTAC+CGG 0.478223 6.1:-53293726 MS.gene97915:CDS
CCACTCATGATCCTTAATCT+TGG 0.480740 6.1:+53293328 None:intergenic
GGAGGATAAGGGTGTGGAAG+TGG 0.483734 6.1:-53293237 MS.gene97915:CDS
TTTCTAATGGGAAATAGTGC+TGG 0.493645 6.1:-53293614 MS.gene97915:CDS
ATTTCGAGTGAGTGTGTCGT+TGG 0.495284 6.1:+53294027 None:intergenic
ATCGCCTCGCACCGGAGCAC+CGG 0.497130 6.1:-53293733 MS.gene97915:CDS
TTTCGAGTGAGTGTGTCGTT+GGG 0.500130 6.1:+53294028 None:intergenic
TAAGGGTGTGGAAGTGGTGA+AGG 0.501738 6.1:-53293231 MS.gene97915:CDS
GTGTGTTAGTGATTTGATGT+GGG 0.504249 6.1:-53293432 MS.gene97915:CDS
TAACTCGGACTCAGTCCTAT+TGG 0.506530 6.1:+53293484 None:intergenic
TGGGAGTTAGCGTTACCAAT+TGG 0.507682 6.1:-53293413 MS.gene97915:CDS
CCATGAAAGAAAACAATAAG+TGG 0.534559 6.1:+53293854 None:intergenic
GGTCGAAGCAGTTGTTGCCT+CGG 0.535521 6.1:-53293762 MS.gene97915:CDS
GGTTGATCGTAATAAGGAGT+TGG 0.536543 6.1:-53293270 MS.gene97915:CDS
GGAAGAGAAGTGTCTAATGA+AGG 0.545290 6.1:+53293983 None:intergenic
TGTGTGTTAGTGATTTGATG+TGG 0.546036 6.1:-53293433 MS.gene97915:CDS
GTATTGGTAAGGATCGTTGA+TGG 0.548932 6.1:+53294069 None:intergenic
GAGTATTCCAATCTAAGGGT+TGG 0.553194 6.1:-53293374 MS.gene97915:CDS
GGAGTTGGTGAAATTGTTGG+AGG 0.555220 6.1:-53293255 MS.gene97915:CDS
TATTGGTAAGGATCGTTGAT+GGG 0.557043 6.1:+53294070 None:intergenic
GGTCGATTATCGCCTCGCAC+CGG 0.575927 6.1:-53293741 MS.gene97915:CDS
TGAACTTTGAGGTATTGGTA+AGG 0.575934 6.1:+53294058 None:intergenic
GTAGCCGGTGCTCCGGTGCG+AGG 0.576122 6.1:+53293729 None:intergenic
TAAGGATCGTTGATGGGTGG+TGG 0.577562 6.1:+53294076 None:intergenic
GGCGGCATATGATGATGCTA+TGG 0.579015 6.1:-53293705 MS.gene97915:CDS
GCTACAATTGCATATCATGC+AGG 0.580603 6.1:-53293590 MS.gene97915:CDS
AGAAGTGTCTAATGAAGGTG+AGG 0.582650 6.1:+53293988 None:intergenic
GGATCATGAGTGGAGGGTGT+TGG 0.586722 6.1:-53293318 MS.gene97915:CDS
ATTGTTGGAGGATAAGGGTG+TGG 0.586811 6.1:-53293243 MS.gene97915:CDS
TTGAGCCGTTGAAAATTCAA+GGG 0.588282 6.1:-53293538 MS.gene97915:CDS
TATGAATGGTGGAGATCCAT+TGG 0.590004 6.1:-53293291 MS.gene97915:CDS
TCTAATGAAGGTGAGGTATG+TGG 0.593556 6.1:+53293995 None:intergenic
ACCGGAGCACCGGCTACCGG+CGG 0.597839 6.1:-53293723 MS.gene97915:CDS
TTAGGTCAAGAGATGATGAA+TGG 0.600234 6.1:-53293667 MS.gene97915:CDS
ATCATTCTCAAGTCTTAACT+CGG 0.601816 6.1:+53293469 None:intergenic
TCAACCAATCAAACCAAACA+TGG 0.608131 6.1:-53293937 MS.gene97915:CDS
CAAAGCAAAGAACTTCATTG+AGG 0.610017 6.1:-53293162 MS.gene97915:CDS
TGGTAAGGATCGTTGATGGG+TGG 0.610868 6.1:+53294073 None:intergenic
GATTAAGGATCATGAGTGGA+GGG 0.615039 6.1:-53293324 MS.gene97915:CDS
TCATGAGTATTCCAATCTAA+GGG 0.620597 6.1:-53293378 MS.gene97915:CDS
ATCAAATCACTAACACACAA+AGG 0.629463 6.1:+53293437 None:intergenic
TCCTTATTACGATCAACCAA+TGG 0.629948 6.1:+53293275 None:intergenic
GATTGGAATACTCATGATCA+CGG 0.632728 6.1:+53293384 None:intergenic
CCAAGATTAAGGATCATGAG+TGG 0.635104 6.1:-53293328 MS.gene97915:CDS
AGATTAAGGATCATGAGTGG+AGG 0.641256 6.1:-53293325 MS.gene97915:CDS
ATAGCATCATCATATGCCGC+CGG 0.642105 6.1:+53293707 None:intergenic
TGGCAAAGTTTGATTAGACA+TGG 0.655064 6.1:+53294096 None:intergenic
GTGTTGGTGAGTATGAATGG+TGG 0.677117 6.1:-53293302 MS.gene97915:CDS
AAAATTATGGAACATCGTGG+AGG 0.720379 6.1:+53293805 None:intergenic
TGCGAGGCGATAATCGACCG+AGG 0.723884 6.1:+53293745 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCAAAATGTTTTCTAAT+GGG - chr6.1:53293595-53293614 MS.gene97915:CDS 15.0%
!!! CTTTTCAAAATGTTTTCTAA+TGG - chr6.1:53293594-53293613 MS.gene97915:CDS 20.0%
! TGAAAAATTTGCCAAGATTA+AGG - chr6.1:53293882-53293901 MS.gene97915:CDS 25.0%
!!! GAAACATTTGTTGCTTTTTT+AGG + chr6.1:53293325-53293344 None:intergenic 25.0%
ACAAAAATTATGGAACATCG+TGG + chr6.1:53293422-53293441 None:intergenic 30.0%
ATCAAATCACTAACACACAA+AGG + chr6.1:53293787-53293806 None:intergenic 30.0%
ATCATGAGTATTCCAATCTA+AGG - chr6.1:53293842-53293861 MS.gene97915:CDS 30.0%
ATCATTCTCAAGTCTTAACT+CGG + chr6.1:53293755-53293774 None:intergenic 30.0%
CCATGAAAGAAAACAATAAG+TGG + chr6.1:53293370-53293389 None:intergenic 30.0%
CCATTTCAGCACAAAAATTA+TGG + chr6.1:53293432-53293451 None:intergenic 30.0%
TCATGAGTATTCCAATCTAA+GGG - chr6.1:53293843-53293862 MS.gene97915:CDS 30.0%
! ATCAACCCTTGAATTTTCAA+CGG + chr6.1:53293691-53293710 None:intergenic 30.0%
! ATTGTTTTCTTTCATGGAAG+TGG - chr6.1:53293373-53293392 MS.gene97915:CDS 30.0%
! CCACTTATTGTTTTCTTTCA+TGG - chr6.1:53293367-53293386 MS.gene97915:CDS 30.0%
! CCATAATTTTTGTGCTGAAA+TGG - chr6.1:53293429-53293448 MS.gene97915:CDS 30.0%
! TAATTTTTGTGCTGAAATGG+CGG - chr6.1:53293432-53293451 MS.gene97915:CDS 30.0%
! TTCAAGAAGATGGTTTTCAT+GGG - chr6.1:53294016-53294035 MS.gene97915:CDS 30.0%
! TTTCAAGAAGATGGTTTTCA+TGG - chr6.1:53294015-53294034 MS.gene97915:CDS 30.0%
!!! ATATTGCGTCAACCATTTTT+TGG - chr6.1:53293709-53293728 MS.gene97915:CDS 30.0%
!!! CATTTGTTGCTTTTTTAGGT+AGG + chr6.1:53293321-53293340 None:intergenic 30.0%
AAAATTATGGAACATCGTGG+AGG + chr6.1:53293419-53293438 None:intergenic 35.0%
AGTATTCCAATCTAAGGGTT+GGG - chr6.1:53293848-53293867 MS.gene97915:CDS 35.0%
CAAAGCAAAGAACTTCATTG+AGG - chr6.1:53294059-53294078 MS.gene97915:CDS 35.0%
CTAACACACAAAGGAAAAAC+AGG + chr6.1:53293778-53293797 None:intergenic 35.0%
CTCAATGAAGTTCTTTGCTT+TGG + chr6.1:53294061-53294080 None:intergenic 35.0%
GATTGGAATACTCATGATCA+CGG + chr6.1:53293840-53293859 None:intergenic 35.0%
GGAATAATCTAAGCCATGTT+TGG + chr6.1:53293300-53293319 None:intergenic 35.0%
GTGAAATTGTTGGAGGATAA+GGG - chr6.1:53293973-53293992 MS.gene97915:CDS 35.0%
GTGTGTTAGTGATTTGATGT+GGG - chr6.1:53293789-53293808 MS.gene97915:CDS 35.0%
TATTGGTAAGGATCGTTGAT+GGG + chr6.1:53293154-53293173 None:intergenic 35.0%
TCAACCAATCAAACCAAACA+TGG - chr6.1:53293284-53293303 MS.gene97915:CDS 35.0%
TCCTTATTACGATCAACCAA+TGG + chr6.1:53293949-53293968 None:intergenic 35.0%
TGTGTGTTAGTGATTTGATG+TGG - chr6.1:53293788-53293807 MS.gene97915:CDS 35.0%
TTAGGTCAAGAGATGATGAA+TGG - chr6.1:53293554-53293573 MS.gene97915:CDS 35.0%
TTGAGCCGTTGAAAATTCAA+GGG - chr6.1:53293683-53293702 MS.gene97915:CDS 35.0%
TTTCTAATGGGAAATAGTGC+TGG - chr6.1:53293607-53293626 MS.gene97915:CDS 35.0%
! ATGAAGTTCTTTGCTTTGGA+TGG + chr6.1:53294057-53294076 None:intergenic 35.0%
! TCAAGAAGATGGTTTTCATG+GGG - chr6.1:53294017-53294036 MS.gene97915:CDS 35.0%
! TCCATTGGTTGATCGTAATA+AGG - chr6.1:53293945-53293964 MS.gene97915:CDS 35.0%
!! GTGAAGGATTTTCAAGAAGA+TGG - chr6.1:53294006-53294025 MS.gene97915:CDS 35.0%
!! TAAGCCATGTTTGGTTTGAT+TGG + chr6.1:53293291-53293310 None:intergenic 35.0%
!! TAAGGAGTTGGTGAAATTGT+TGG - chr6.1:53293963-53293982 MS.gene97915:CDS 35.0%
!! TGAACTTTGAGGTATTGGTA+AGG + chr6.1:53293166-53293185 None:intergenic 35.0%
!! TGGAAGCATTGAGTTTGATT+AGG - chr6.1:53293536-53293555 MS.gene97915:CDS 35.0%
!! TGTGTTGAACTTTGAGGTAT+TGG + chr6.1:53293171-53293190 None:intergenic 35.0%
!! TGTTTGGTTTGATTGGTTGA+TGG + chr6.1:53293284-53293303 None:intergenic 35.0%
AGATTAAGGATCATGAGTGG+AGG - chr6.1:53293896-53293915 MS.gene97915:CDS 40.0%
ATCATTCCCAACCCTTAGAT+TGG + chr6.1:53293857-53293876 None:intergenic 40.0%
CCAAGATTAAGGATCATGAG+TGG - chr6.1:53293893-53293912 MS.gene97915:CDS 40.0%
CCACTCATGATCCTTAATCT+TGG + chr6.1:53293896-53293915 None:intergenic 40.0%
CTATTGGTCCCACCAAAAAA+TGG + chr6.1:53293724-53293743 None:intergenic 40.0%
CTTGAGCCGTTGAAAATTCA+AGG - chr6.1:53293682-53293701 MS.gene97915:CDS 40.0%
GAGTATTCCAATCTAAGGGT+TGG - chr6.1:53293847-53293866 MS.gene97915:CDS 40.0%
GATTAAGGATCATGAGTGGA+GGG - chr6.1:53293897-53293916 MS.gene97915:CDS 40.0%
GCTACAATTGCATATCATGC+AGG - chr6.1:53293631-53293650 MS.gene97915:CDS 40.0%
GGTGAAATTGTTGGAGGATA+AGG - chr6.1:53293972-53293991 MS.gene97915:CDS 40.0%
GGTTGATCGTAATAAGGAGT+TGG - chr6.1:53293951-53293970 MS.gene97915:CDS 40.0%
GTGAGATCTTTGGTTAGAAC+AGG + chr6.1:53293262-53293281 None:intergenic 40.0%
TCTAATGAAGGTGAGGTATG+TGG + chr6.1:53293229-53293248 None:intergenic 40.0%
TGGGATTGTGTTGAACTTTG+AGG + chr6.1:53293177-53293196 None:intergenic 40.0%
! GTATTGGTAAGGATCGTTGA+TGG + chr6.1:53293155-53293174 None:intergenic 40.0%
! TATGAATGGTGGAGATCCAT+TGG - chr6.1:53293930-53293949 MS.gene97915:CDS 40.0%
!! AGAAGTGTCTAATGAAGGTG+AGG + chr6.1:53293236-53293255 None:intergenic 40.0%
!! GGAAGAGAAGTGTCTAATGA+AGG + chr6.1:53293241-53293260 None:intergenic 40.0%
!! GTGGTAGTAGCTTGTTGTTT+AGG + chr6.1:53293351-53293370 None:intergenic 40.0%
!! TTGGTTGATGGTGAGATCTT+TGG + chr6.1:53293272-53293291 None:intergenic 40.0%
!!! CATTTTTTGGTGGGACCAAT+AGG - chr6.1:53293722-53293741 MS.gene97915:CDS 40.0%
!!! TGCGTCAACCATTTTTTGGT+GGG - chr6.1:53293713-53293732 MS.gene97915:CDS 40.0%
!!! TTGCGTCAACCATTTTTTGG+TGG - chr6.1:53293712-53293731 MS.gene97915:CDS 40.0%
ATAGCATCATCATATGCCGC+CGG + chr6.1:53293517-53293536 None:intergenic 45.0%
ATTGTTGGAGGATAAGGGTG+TGG - chr6.1:53293978-53293997 MS.gene97915:CDS 45.0%
TAACTCGGACTCAGTCCTAT+TGG + chr6.1:53293740-53293759 None:intergenic 45.0%
TGATCACGGTCAACACCAAT+TGG + chr6.1:53293826-53293845 None:intergenic 45.0%
TGGGAGTTAGCGTTACCAAT+TGG - chr6.1:53293808-53293827 MS.gene97915:CDS 45.0%
! ATTTCGAGTGAGTGTGTCGT+TGG + chr6.1:53293197-53293216 None:intergenic 45.0%
! GTGTTGGTGAGTATGAATGG+TGG - chr6.1:53293919-53293938 MS.gene97915:CDS 45.0%
! TTTCGAGTGAGTGTGTCGTT+GGG + chr6.1:53293196-53293215 None:intergenic 45.0%
!! AGGGTGTTGGTGAGTATGAA+TGG - chr6.1:53293916-53293935 MS.gene97915:CDS 45.0%
!! GGAGTTGGTGAAATTGTTGG+AGG - chr6.1:53293966-53293985 MS.gene97915:CDS 45.0%
!! TTGTGCTGAAATGGCGGATA+CGG - chr6.1:53293438-53293457 MS.gene97915:CDS 45.0%
! GGCGGCATATGATGATGCTA+TGG - chr6.1:53293516-53293535 MS.gene97915:CDS 50.0%
! TAAGGATCGTTGATGGGTGG+TGG + chr6.1:53293148-53293167 None:intergenic 50.0%
! TAAGGGTGTGGAAGTGGTGA+AGG - chr6.1:53293990-53294009 MS.gene97915:CDS 50.0%
! TGGTAAGGATCGTTGATGGG+TGG + chr6.1:53293151-53293170 None:intergenic 50.0%
GGTCGAAGCAGTTGTTGCCT+CGG - chr6.1:53293459-53293478 MS.gene97915:CDS 55.0%
! GGAGGATAAGGGTGTGGAAG+TGG - chr6.1:53293984-53294003 MS.gene97915:CDS 55.0%
! GGATCATGAGTGGAGGGTGT+TGG - chr6.1:53293903-53293922 MS.gene97915:CDS 55.0%
CATCATATGCCGCCGGTAGC+CGG + chr6.1:53293510-53293529 None:intergenic 60.0%
GGTCGATTATCGCCTCGCAC+CGG - chr6.1:53293480-53293499 MS.gene97915:CDS 60.0%
TGCGAGGCGATAATCGACCG+AGG + chr6.1:53293479-53293498 None:intergenic 60.0%
ATCGCCTCGCACCGGAGCAC+CGG - chr6.1:53293488-53293507 MS.gene97915:CDS 70.0%
GTAGCCGGTGCTCCGGTGCG+AGG + chr6.1:53293495-53293514 None:intergenic 75.0%
!! ACCGGAGCACCGGCTACCGG+CGG - chr6.1:53293498-53293517 MS.gene97915:CDS 75.0%
!! CGCACCGGAGCACCGGCTAC+CGG - chr6.1:53293495-53293514 MS.gene97915:CDS 75.0%
! GCCGCCGGTAGCCGGTGCTC+CGG + chr6.1:53293502-53293521 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 53293127 53294116 53293127 ID=MS.gene97915
chr6.1 mRNA 53293127 53294116 53293127 ID=MS.gene97915.t1;Parent=MS.gene97915
chr6.1 exon 53293127 53294116 53293127 ID=MS.gene97915.t1.exon1;Parent=MS.gene97915.t1
chr6.1 CDS 53293127 53294116 53293127 ID=cds.MS.gene97915.t1;Parent=MS.gene97915.t1
Gene Sequence

>MS.gene97915

ATGTCTAATCAAACTTTGCCACCACCCATCAACGATCCTTACCAATACCTCAAAGTTCAACACAATCCCAACGACACACTCACTCGAAATCTTGAAGATCCACATACCTCACCTTCATTAGACACTTCTCTTCCTGTTCTAACCAAAGATCTCACCATCAACCAATCAAACCAAACATGGCTTAGATTATTCCTACCTAAAAAAGCAACAAATGTTTCAAACCTAAACAACAAGCTACTACCACTTATTGTTTTCTTTCATGGAAGTGGCTTCATTGTACTAAGTGCAGCCTCCACGATGTTCCATAATTTTTGTGCTGAAATGGCGGATACGGTCGAAGCAGTTGTTGCCTCGGTCGATTATCGCCTCGCACCGGAGCACCGGCTACCGGCGGCATATGATGATGCTATGGAAGCATTGAGTTTGATTAGGTCAAGAGATGATGAATGGTTGACTAAATATGTTGACTTTTCAAAATGTTTTCTAATGGGAAATAGTGCTGGAGCTACAATTGCATATCATGCAGGATTACGTGTAGTTGAAAATATGAATGATCTTGAGCCGTTGAAAATTCAAGGGTTGATATTGCGTCAACCATTTTTTGGTGGGACCAATAGGACTGAGTCCGAGTTAAGACTTGAGAATGATCCTGTTTTTCCTTTGTGTGTTAGTGATTTGATGTGGGAGTTAGCGTTACCAATTGGTGTTGACCGTGATCATGAGTATTCCAATCTAAGGGTTGGGAATGATGTTGATGAAAAATTTGCCAAGATTAAGGATCATGAGTGGAGGGTGTTGGTGAGTATGAATGGTGGAGATCCATTGGTTGATCGTAATAAGGAGTTGGTGAAATTGTTGGAGGATAAGGGTGTGGAAGTGGTGAAGGATTTTCAAGAAGATGGTTTTCATGGGGTTGAGTTTTTTGAGCCATCCAAAGCAAAGAACTTCATTGAGGTAGTAAAAGCTTTCATCTCTTCCTTTGATGCTTAG
Protein sequence

>MS.gene97915.t1

MSNQTLPPPINDPYQYLKVQHNPNDTLTRNLEDPHTSPSLDTSLPVLTKDLTINQSNQTWLRLFLPKKATNVSNLNNKLLPLIVFFHGSGFIVLSAASTMFHNFCAEMADTVEAVVASVDYRLAPEHRLPAAYDDAMEALSLIRSRDDEWLTKYVDFSKCFLMGNSAGATIAYHAGLRVVENMNDLEPLKIQGLILRQPFFGGTNRTESELRLENDPVFPLCVSDLMWELALPIGVDRDHEYSNLRVGNDVDEKFAKIKDHEWRVLVSMNGGDPLVDRNKELVKLLEDKGVEVVKDFQEDGFHGVEFFEPSKAKNFIEVVKAFISSFDA