Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98589.t1 | XP_013455791.1 | 91.9 | 640 | 51 | 1 | 1 | 640 | 1 | 639 | 0.00E+00 | 1079.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98589.t1 | Q66GQ2 | 28.2 | 404 | 249 | 12 | 133 | 511 | 92 | 479 | 2.9e-13 | 78.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98589.t1 | A0A072UJH3 | 91.9 | 640 | 51 | 1 | 1 | 640 | 1 | 639 | 0.0e+00 | 1079.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050901 | MS.gene98589 | 0.806028 | 1.00E-49 | -1.69E-46 |
MS.gene05157 | MS.gene98589 | 0.828955 | 6.74E-55 | -1.69E-46 |
MS.gene052732 | MS.gene98589 | 0.811428 | 7.04E-51 | -1.69E-46 |
MS.gene053144 | MS.gene98589 | 0.828801 | 7.35E-55 | -1.69E-46 |
MS.gene053174 | MS.gene98589 | 0.821397 | 4.13E-53 | -1.69E-46 |
MS.gene054550 | MS.gene98589 | 0.831162 | 1.95E-55 | -1.69E-46 |
MS.gene054584 | MS.gene98589 | 0.823852 | 1.11E-53 | -1.69E-46 |
MS.gene054824 | MS.gene98589 | 0.806966 | 6.36E-50 | -1.69E-46 |
MS.gene055465 | MS.gene98589 | 0.810279 | 1.25E-50 | -1.69E-46 |
MS.gene055537 | MS.gene98589 | 0.826402 | 2.77E-54 | -1.69E-46 |
MS.gene055890 | MS.gene98589 | 0.810796 | 9.64E-51 | -1.69E-46 |
MS.gene055891 | MS.gene98589 | 0.803199 | 3.91E-49 | -1.69E-46 |
MS.gene056507 | MS.gene98589 | 0.801792 | 7.62E-49 | -1.69E-46 |
MS.gene058649 | MS.gene98589 | 0.80637 | 8.50E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98589.t1 | MTR_4g052400 | 95.000 | 640 | 31 | 1 | 1 | 640 | 1 | 639 | 0.0 | 1194 |
MS.gene98589.t1 | MTR_4g052400 | 94.759 | 477 | 24 | 1 | 164 | 640 | 2 | 477 | 0.0 | 885 |
MS.gene98589.t1 | MTR_2g086890 | 50.825 | 667 | 263 | 21 | 1 | 628 | 1 | 641 | 5.89e-174 | 509 |
MS.gene98589.t1 | MTR_7g105430 | 42.804 | 542 | 261 | 17 | 19 | 524 | 4 | 532 | 6.48e-109 | 343 |
MS.gene98589.t1 | MTR_5g009750 | 30.370 | 405 | 257 | 8 | 45 | 436 | 20 | 412 | 1.23e-40 | 157 |
MS.gene98589.t1 | MTR_3g051430 | 38.249 | 217 | 129 | 3 | 219 | 435 | 199 | 410 | 3.44e-35 | 142 |
MS.gene98589.t1 | MTR_5g092610 | 39.524 | 210 | 119 | 2 | 228 | 437 | 201 | 402 | 1.46e-30 | 127 |
MS.gene98589.t1 | MTR_8g028230 | 26.683 | 416 | 261 | 11 | 42 | 449 | 18 | 397 | 1.12e-26 | 115 |
MS.gene98589.t1 | MTR_2g023020 | 34.896 | 192 | 117 | 1 | 256 | 439 | 176 | 367 | 8.91e-24 | 105 |
MS.gene98589.t1 | MTR_8g028230 | 29.600 | 250 | 168 | 4 | 206 | 449 | 109 | 356 | 1.01e-21 | 99.8 |
MS.gene98589.t1 | MTR_8g028230 | 29.600 | 250 | 168 | 4 | 206 | 449 | 63 | 310 | 1.66e-21 | 98.6 |
MS.gene98589.t1 | MTR_8g028230 | 29.600 | 250 | 168 | 4 | 206 | 449 | 36 | 283 | 3.11e-21 | 97.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98589.t1 | AT3G11590 | 42.500 | 520 | 265 | 10 | 22 | 514 | 15 | 527 | 1.53e-103 | 327 |
MS.gene98589.t1 | AT3G11590 | 44.737 | 342 | 178 | 5 | 180 | 514 | 28 | 365 | 2.75e-72 | 241 |
MS.gene98589.t1 | AT5G22310 | 36.400 | 500 | 218 | 16 | 23 | 512 | 9 | 418 | 7.67e-59 | 205 |
MS.gene98589.t1 | AT1G50660 | 37.156 | 218 | 135 | 1 | 220 | 437 | 213 | 428 | 3.74e-39 | 154 |
MS.gene98589.t1 | AT3G20350 | 41.317 | 167 | 98 | 0 | 271 | 437 | 239 | 405 | 1.18e-32 | 134 |
MS.gene98589.t1 | AT5G41620 | 27.912 | 455 | 270 | 15 | 96 | 511 | 44 | 479 | 1.43e-21 | 99.8 |
MS.gene98589.t1 | AT5G41620 | 28.990 | 307 | 195 | 7 | 214 | 511 | 70 | 362 | 5.03e-20 | 94.4 |
MS.gene98589.t1 | AT5G41620 | 28.990 | 307 | 195 | 7 | 214 | 511 | 70 | 362 | 5.03e-20 | 94.4 |
MS.gene98589.t1 | AT5G41620 | 28.990 | 307 | 195 | 7 | 214 | 511 | 28 | 320 | 9.14e-20 | 93.2 |
MS.gene98589.t1 | AT1G64180 | 28.165 | 387 | 226 | 15 | 97 | 460 | 61 | 418 | 1.30e-16 | 84.0 |
MS.gene98589.t1 | AT2G46250 | 26.720 | 378 | 217 | 13 | 42 | 415 | 13 | 334 | 9.07e-14 | 74.7 |
Find 115 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCTCTAAGACCTTCTTTA+AGG | 0.119885 | 4.2:-49793734 | None:intergenic |
CAGATTCAAGAGAGCTATTT+TGG | 0.143793 | 4.2:+49793824 | MS.gene98589:CDS |
GTCCTTCAAACTCTGCATTT+TGG | 0.173945 | 4.2:-49796100 | None:intergenic |
AGAACTAGAGATGAAGAAAA+TGG | 0.210580 | 4.2:+49796008 | MS.gene98589:CDS |
CTCCTTCTCTTTATCTTTGC+AGG | 0.213342 | 4.2:-49793964 | None:intergenic |
ATCTTGACCTTCTTGAATAT+TGG | 0.229109 | 4.2:-49796354 | None:intergenic |
TAGAAATTTACCTCTGAAAT+AGG | 0.248068 | 4.2:-49794182 | None:intergenic |
TACTACATCTTCACCTTCTA+TGG | 0.268315 | 4.2:+49793896 | MS.gene98589:CDS |
CAAATCCCTCTTCTTGAAAC+TGG | 0.309352 | 4.2:-49796327 | None:intergenic |
CCATATACTCAATGTCGTTC+TGG | 0.316655 | 4.2:-49795524 | None:intergenic |
CCAGAACGACATTGAGTATA+TGG | 0.324326 | 4.2:+49795524 | MS.gene98589:CDS |
CAGTTTCAAGAAGAGGGATT+TGG | 0.331048 | 4.2:+49796328 | MS.gene98589:CDS |
AAGTCCTTCTTGACCCTTGA+AGG | 0.334027 | 4.2:-49794044 | None:intergenic |
GTTATTCATGTTCAGTTCAA+TGG | 0.342674 | 4.2:-49796159 | None:intergenic |
ATCCTCATCTTCATCTTCCT+TGG | 0.350860 | 4.2:+49793791 | MS.gene98589:CDS |
CTCTCGGAAGTGAGCTTGAT+CGG | 0.359285 | 4.2:+49795451 | MS.gene98589:CDS |
GATGAACTAGATAGAGGTAT+TGG | 0.368167 | 4.2:+49795783 | MS.gene98589:CDS |
GAACTAGAGATGAAGAAAAT+GGG | 0.372973 | 4.2:+49796009 | MS.gene98589:CDS |
ATGAACTAGATAGAGGTATT+GGG | 0.375325 | 4.2:+49795784 | MS.gene98589:CDS |
TAGCCTCTGAAAGCTTCATT+TGG | 0.383384 | 4.2:-49795920 | None:intergenic |
TTATCTCATCCACTTCGTTC+TGG | 0.386985 | 4.2:+49794341 | MS.gene98589:CDS |
AAATTCTCTTCTTGTCTTTG+AGG | 0.399203 | 4.2:+49796535 | MS.gene98589:CDS |
GCTGGTGGAGGAAATGAAAA+AGG | 0.402845 | 4.2:+49795818 | MS.gene98589:CDS |
AATTCTCTTCTTGTCTTTGA+GGG | 0.407799 | 4.2:+49796536 | MS.gene98589:CDS |
TCATGTTCAGTTCAATGGAT+TGG | 0.409865 | 4.2:-49796154 | None:intergenic |
CTTGTATAAGTTTGTCAAGT+AGG | 0.416680 | 4.2:-49795482 | None:intergenic |
CTAGTCTTCCACAGTGGAAC+TGG | 0.417773 | 4.2:-49793873 | None:intergenic |
GACATCGAAGAAGATTCTTA+AGG | 0.419711 | 4.2:+49795371 | MS.gene98589:CDS |
AAAACTTGCTGCTTCTTTGT+GGG | 0.423406 | 4.2:+49794004 | MS.gene98589:CDS |
GAAAACTTGCTGCTTCTTTG+TGG | 0.429207 | 4.2:+49794003 | MS.gene98589:CDS |
GAGAAATTCAATTGAACTAT+CGG | 0.431627 | 4.2:-49796387 | None:intergenic |
ATCTTATGAGAGAATTCAAT+GGG | 0.436305 | 4.2:+49796277 | MS.gene98589:CDS |
AGAAAATGGGGATGCTTCTC+CGG | 0.438097 | 4.2:+49796022 | MS.gene98589:CDS |
AGTGAGCTTGATCGGGTTTG+TGG | 0.441743 | 4.2:+49795459 | MS.gene98589:CDS |
TAAGAAGATTGCCCTAGAAA+TGG | 0.445287 | 4.2:+49795677 | MS.gene98589:CDS |
TTACAGTGGAGAAGAAGTTA+AGG | 0.447721 | 4.2:+49795634 | MS.gene98589:CDS |
GGTTACAGAAGAACAGTGTC+AGG | 0.450224 | 4.2:+49794317 | MS.gene98589:CDS |
TCTCGGAAGTGAGCTTGATC+GGG | 0.453424 | 4.2:+49795452 | MS.gene98589:CDS |
AGATTTCACACAACAAAATC+AGG | 0.460418 | 4.2:+49793754 | MS.gene98589:CDS |
TTCCAAAATGCAGAGTTTGA+AGG | 0.463631 | 4.2:+49796098 | MS.gene98589:CDS |
TCAATGATTTGCATCCTTCA+AGG | 0.464131 | 4.2:+49794030 | MS.gene98589:CDS |
AGGACGGAACTCCAAGCAAT+AGG | 0.467947 | 4.2:+49796435 | MS.gene98589:CDS |
TTTGAAATGCAGAAGAATAG+TGG | 0.468349 | 4.2:+49795294 | MS.gene98589:intron |
AGAGGCTAAGTATCAATTTG+AGG | 0.476141 | 4.2:+49795935 | MS.gene98589:CDS |
AACATGAATAACGGCAATAG+AGG | 0.482536 | 4.2:+49796170 | MS.gene98589:CDS |
AGAAATTCAATTGAACTATC+GGG | 0.482943 | 4.2:-49796386 | None:intergenic |
GAAATTCCAGTTTCAAGAAG+AGG | 0.486758 | 4.2:+49796321 | MS.gene98589:CDS |
CTTGAAATAGACCTATTGCT+TGG | 0.494567 | 4.2:-49796446 | None:intergenic |
TTGATTATGCAGAGAATGAA+AGG | 0.495962 | 4.2:+49794281 | MS.gene98589:intron |
TTGAATTTCTCTCTCGAGCT+CGG | 0.496584 | 4.2:+49796399 | MS.gene98589:CDS |
TCCTTCTCTTTATCTTTGCA+GGG | 0.498201 | 4.2:-49793963 | None:intergenic |
TACTTCTAGCTTCCTTCAGA+TGG | 0.502252 | 4.2:-49795341 | None:intergenic |
AAATTCCAGTTTCAAGAAGA+GGG | 0.503620 | 4.2:+49796322 | MS.gene98589:CDS |
ATGAAAGGATTTGAAAGTGA+TGG | 0.504945 | 4.2:+49794296 | MS.gene98589:CDS |
AAGTATGTGAAGAGCTTGAA+AGG | 0.517210 | 4.2:+49795724 | MS.gene98589:CDS |
TTGGATACCAATATTCAAGA+AGG | 0.521415 | 4.2:+49796347 | MS.gene98589:CDS |
GCATCCTTCAAGGGTCAAGA+AGG | 0.522100 | 4.2:+49794040 | MS.gene98589:CDS |
TATCAGTGTTAGTTTAAATG+AGG | 0.522803 | 4.2:+49794376 | MS.gene98589:CDS |
AATCTTATGAGAGAATTCAA+TGG | 0.524217 | 4.2:+49796276 | MS.gene98589:CDS |
CAATGATTTGCATCCTTCAA+GGG | 0.529504 | 4.2:+49794031 | MS.gene98589:CDS |
AGTATGTGAAGAGCTTGAAA+GGG | 0.530337 | 4.2:+49795725 | MS.gene98589:CDS |
ATGGCCCTCACCTTGGCTCT+CGG | 0.531209 | 4.2:+49795435 | MS.gene98589:CDS |
ATTGAACTGAACATGAATAA+CGG | 0.531601 | 4.2:+49796161 | MS.gene98589:CDS |
ATCGACAATGGCCCTCACCT+TGG | 0.536907 | 4.2:+49795428 | MS.gene98589:CDS |
ATGGAGTTATCCAAGCGAAA+AGG | 0.537795 | 4.2:+49796199 | MS.gene98589:CDS |
TGAACTAGATAGAGGTATTG+GGG | 0.538650 | 4.2:+49795785 | MS.gene98589:CDS |
ACAAACAATAACCTTAAAGA+AGG | 0.541262 | 4.2:+49793723 | MS.gene98589:CDS |
TCAACTGACAAAGAAAGTAC+AGG | 0.541285 | 4.2:+49796248 | MS.gene98589:CDS |
TGGGGAAGACAGAGCGCTGG+TGG | 0.546628 | 4.2:+49795803 | MS.gene98589:CDS |
ATTTGTGATGAACTAGATAG+AGG | 0.552401 | 4.2:+49795777 | MS.gene98589:CDS |
TCTGAAATAGGACTGTTACA+TGG | 0.558134 | 4.2:-49794170 | None:intergenic |
AATAGTGGCAAATGCGCGGT+TGG | 0.558575 | 4.2:+49795309 | MS.gene98589:CDS |
CACTTCCGAGAGCCAAGGTG+AGG | 0.561898 | 4.2:-49795440 | None:intergenic |
GGTTAAAGTTCGTGAAGAAG+TGG | 0.574473 | 4.2:+49795845 | MS.gene98589:CDS |
GGAAGACAGAGCGCTGGTGG+AGG | 0.574780 | 4.2:+49795806 | MS.gene98589:CDS |
TTTCTAGATCAGGTTTGTTG+AGG | 0.578053 | 4.2:+49794132 | MS.gene98589:CDS |
CCACAGTGGAACTGGTGTGG+TGG | 0.578057 | 4.2:-49793865 | None:intergenic |
AACTAGAGATGAAGAAAATG+GGG | 0.583537 | 4.2:+49796010 | MS.gene98589:CDS |
TGTGTAGTGTTCTCCATAGA+AGG | 0.588791 | 4.2:-49793909 | None:intergenic |
AGCCAAGGAAGATGAAGATG+AGG | 0.590023 | 4.2:-49793793 | None:intergenic |
TCATCCACTTCGTTCTGGTG+TGG | 0.594511 | 4.2:+49794346 | MS.gene98589:CDS |
CTGTTACATGGATCTGACAT+AGG | 0.596821 | 4.2:-49794158 | None:intergenic |
GTTTGTTTGATTATGACAAG+AGG | 0.599018 | 4.2:-49793706 | None:intergenic |
CAACTGACAAAGAAAGTACA+GGG | 0.604741 | 4.2:+49796249 | MS.gene98589:CDS |
GAATCTGTATCTTCTAGCCA+AGG | 0.604749 | 4.2:-49793808 | None:intergenic |
AGGACATAATGACTCGGATG+AGG | 0.605873 | 4.2:+49796118 | MS.gene98589:CDS |
TGGAGTGAAGAGCCATCTGA+AGG | 0.607672 | 4.2:+49795329 | MS.gene98589:CDS |
ACTTCCGAGAGCCAAGGTGA+GGG | 0.608096 | 4.2:-49795439 | None:intergenic |
TTGCAGAAGAAAAGGCTGCA+TGG | 0.610809 | 4.2:+49795556 | MS.gene98589:CDS |
CTGCAAAGATAAAGAGAAGG+AGG | 0.614526 | 4.2:+49793965 | MS.gene98589:CDS |
AGTTAAGGAAACAAACTGAA+AGG | 0.615070 | 4.2:+49795649 | MS.gene98589:CDS |
CTTCCACAGTGGAACTGGTG+TGG | 0.616603 | 4.2:-49793868 | None:intergenic |
ACGGCAATAGAGGATCAGAA+TGG | 0.622780 | 4.2:+49796180 | MS.gene98589:CDS |
AAGCTCACTTCCGAGAGCCA+AGG | 0.624529 | 4.2:-49795445 | None:intergenic |
TGAGCAAATGAGAAGCTGCA+AGG | 0.629237 | 4.2:+49794073 | MS.gene98589:CDS |
GCGTCCACACCAGAACGAAG+TGG | 0.631718 | 4.2:-49794350 | None:intergenic |
TATTGGGGAAGACAGAGCGC+TGG | 0.631890 | 4.2:+49795800 | MS.gene98589:CDS |
AGAGAAGAAATCATCGACAA+TGG | 0.635957 | 4.2:+49795416 | MS.gene98589:CDS |
AGTCCAAATGAAGCTTTCAG+AGG | 0.636988 | 4.2:+49795917 | MS.gene98589:CDS |
ATGTAACAGTCCTATTTCAG+AGG | 0.639090 | 4.2:+49794172 | MS.gene98589:CDS |
CGGATACAAGACGATGAGGA+CGG | 0.655237 | 4.2:+49796419 | MS.gene98589:CDS |
CTTTCACTAGTACACTGCAA+AGG | 0.656661 | 4.2:-49796503 | None:intergenic |
ACCCTGCAAAGATAAAGAGA+AGG | 0.657910 | 4.2:+49793962 | MS.gene98589:CDS |
AGTTATCCAAGCGAAAAGGA+TGG | 0.665163 | 4.2:+49796203 | MS.gene98589:CDS |
GAAGAATAGTGGCAAATGCG+CGG | 0.672467 | 4.2:+49795305 | MS.gene98589:intron |
TGTAGCTGAAGAGCTTACAG+TGG | 0.676427 | 4.2:+49795620 | MS.gene98589:CDS |
AGCTCGGATACAAGACGATG+AGG | 0.678318 | 4.2:+49796415 | MS.gene98589:CDS |
TTACATGGATCTGACATAGG+TGG | 0.679281 | 4.2:-49794155 | None:intergenic |
GTTTGAAGGACATAATGACT+CGG | 0.680846 | 4.2:+49796112 | MS.gene98589:CDS |
AATTTGAAGCAAGAAGCTGA+AGG | 0.689873 | 4.2:+49796563 | MS.gene98589:CDS |
GTTACAGAAGAACAGTGTCA+GGG | 0.691405 | 4.2:+49794318 | MS.gene98589:CDS |
CCACCACACCAGTTCCACTG+TGG | 0.727949 | 4.2:+49793865 | MS.gene98589:CDS |
CTGACAAAGAAAGTACAGGG+AGG | 0.786919 | 4.2:+49796252 | MS.gene98589:CDS |
TCTTATGAGAGAATTCAATG+GGG | 0.795055 | 4.2:+49796278 | MS.gene98589:CDS |
GTAGTACTAGTCTTCCACAG+TGG | 0.798955 | 4.2:-49793879 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACAAAAAGAAAATAAAAAT+TGG | + | chr4.2:49794795-49794814 | MS.gene98589:intron | 10.0% |
!!! | TAATTTAAAATTACATGTTT+TGG | + | chr4.2:49795236-49795255 | MS.gene98589:intron | 10.0% |
!!! | TAATTTTATTGTAAGAAAAT+AGG | - | chr4.2:49794986-49795005 | None:intergenic | 10.0% |
!! | ACATATCTAAATTAGAAATG+TGG | + | chr4.2:49794591-49794610 | MS.gene98589:intron | 20.0% |
!! | TCTCTCAAATAAATATCTAA+CGG | - | chr4.2:49794962-49794981 | None:intergenic | 20.0% |
!!! | CTTTTTTTGTGTCAAAATTT+GGG | + | chr4.2:49794855-49794874 | MS.gene98589:intron | 20.0% |
!!! | TCATTTTGTATTGTGTTATT+TGG | + | chr4.2:49794224-49794243 | MS.gene98589:intron | 20.0% |
!!! | TTAATTTGTAGTAGTTGAAA+AGG | + | chr4.2:49794882-49794901 | MS.gene98589:intron | 20.0% |
!!! | TTAATTTTTAGTAGCTTTTC+AGG | + | chr4.2:49795003-49795022 | MS.gene98589:intron | 20.0% |
!!! | TTGATGATTATGAAAATGAT+GGG | - | chr4.2:49794821-49794840 | None:intergenic | 20.0% |
!!! | TTTAAAATTACATGTTTTGG+TGG | + | chr4.2:49795239-49795258 | MS.gene98589:intron | 20.0% |
!!! | TTTTTTTGTGTCAAAATTTG+GGG | + | chr4.2:49794856-49794875 | MS.gene98589:intron | 20.0% |
! | AATCTTATGAGAGAATTCAA+TGG | + | chr4.2:49796276-49796295 | MS.gene98589:CDS | 25.0% |
! | ACAAACAATAACCTTAAAGA+AGG | + | chr4.2:49793723-49793742 | MS.gene98589:CDS | 25.0% |
! | AGAAATTCAATTGAACTATC+GGG | - | chr4.2:49796389-49796408 | None:intergenic | 25.0% |
! | ATCTTATGAGAGAATTCAAT+GGG | + | chr4.2:49796277-49796296 | MS.gene98589:CDS | 25.0% |
! | ATTGAACTGAACATGAATAA+CGG | + | chr4.2:49796161-49796180 | MS.gene98589:CDS | 25.0% |
! | CAAAAAAAGGTTGAATAACT+AGG | - | chr4.2:49794844-49794863 | None:intergenic | 25.0% |
! | GAGAAATTCAATTGAACTAT+CGG | - | chr4.2:49796390-49796409 | None:intergenic | 25.0% |
!! | TATCAGTGTTAGTTTAAATG+AGG | + | chr4.2:49794376-49794395 | MS.gene98589:CDS | 25.0% |
!!! | CCAAATTTTGACACAAAAAA+AGG | - | chr4.2:49794857-49794876 | None:intergenic | 25.0% |
!!! | CCTTTTTTTGTGTCAAAATT+TGG | + | chr4.2:49794854-49794873 | MS.gene98589:intron | 25.0% |
!!! | GTTGATGATTATGAAAATGA+TGG | - | chr4.2:49794822-49794841 | None:intergenic | 25.0% |
!!! | TAGAAATTTACCTCTGAAAT+AGG | - | chr4.2:49794185-49794204 | None:intergenic | 25.0% |
!!! | TTTTTTGTGTCAAAATTTGG+GGG | + | chr4.2:49794857-49794876 | MS.gene98589:intron | 25.0% |
AAATTCCAGTTTCAAGAAGA+GGG | + | chr4.2:49796322-49796341 | MS.gene98589:CDS | 30.0% | |
AAATTCTCTTCTTGTCTTTG+AGG | + | chr4.2:49796535-49796554 | MS.gene98589:CDS | 30.0% | |
AACTAGAGATGAAGAAAATG+GGG | + | chr4.2:49796010-49796029 | MS.gene98589:CDS | 30.0% | |
AATTCTCTTCTTGTCTTTGA+GGG | + | chr4.2:49796536-49796555 | MS.gene98589:CDS | 30.0% | |
AGAACTAGAGATGAAGAAAA+TGG | + | chr4.2:49796008-49796027 | MS.gene98589:CDS | 30.0% | |
AGATTTCACACAACAAAATC+AGG | + | chr4.2:49793754-49793773 | MS.gene98589:CDS | 30.0% | |
AGTTAAGGAAACAAACTGAA+AGG | + | chr4.2:49795649-49795668 | MS.gene98589:CDS | 30.0% | |
ATCTTGACCTTCTTGAATAT+TGG | - | chr4.2:49796357-49796376 | None:intergenic | 30.0% | |
ATGAAAGGATTTGAAAGTGA+TGG | + | chr4.2:49794296-49794315 | MS.gene98589:CDS | 30.0% | |
ATTTGTGATGAACTAGATAG+AGG | + | chr4.2:49795777-49795796 | MS.gene98589:CDS | 30.0% | |
CTTGTATAAGTTTGTCAAGT+AGG | - | chr4.2:49795485-49795504 | None:intergenic | 30.0% | |
GAACTAGAGATGAAGAAAAT+GGG | + | chr4.2:49796009-49796028 | MS.gene98589:CDS | 30.0% | |
GTTATTCATGTTCAGTTCAA+TGG | - | chr4.2:49796162-49796181 | None:intergenic | 30.0% | |
GTTTGTTTGATTATGACAAG+AGG | - | chr4.2:49793709-49793728 | None:intergenic | 30.0% | |
TAACAGCAGGCAAAATATAT+AGG | + | chr4.2:49795199-49795218 | MS.gene98589:intron | 30.0% | |
TCAATTGAAAAAGTAACAGC+AGG | + | chr4.2:49795186-49795205 | MS.gene98589:intron | 30.0% | |
TCCTGATAGAGATTAATCAT+TGG | + | chr4.2:49794736-49794755 | MS.gene98589:intron | 30.0% | |
TCTTATGAGAGAATTCAATG+GGG | + | chr4.2:49796278-49796297 | MS.gene98589:CDS | 30.0% | |
TTAATCTCTATCAGGAAACT+TGG | - | chr4.2:49794732-49794751 | None:intergenic | 30.0% | |
TTGATTATGCAGAGAATGAA+AGG | + | chr4.2:49794281-49794300 | MS.gene98589:intron | 30.0% | |
TTGGATACCAATATTCAAGA+AGG | + | chr4.2:49796347-49796366 | MS.gene98589:CDS | 30.0% | |
! | CTCTTCAGCTACATTTTTAA+CGG | - | chr4.2:49795613-49795632 | None:intergenic | 30.0% |
! | GAATTTGAAACCTTGCTTAA+GGG | - | chr4.2:49794673-49794692 | None:intergenic | 30.0% |
! | TGAATTTGAAACCTTGCTTA+AGG | - | chr4.2:49794674-49794693 | None:intergenic | 30.0% |
! | TTTGAAATGCAGAAGAATAG+TGG | + | chr4.2:49795294-49795313 | MS.gene98589:intron | 30.0% |
! | TTTTACACTAGCCATTTCTA+GGG | - | chr4.2:49795691-49795710 | None:intergenic | 30.0% |
! | TTTTGTATTCTACAGCTTCA+GGG | + | chr4.2:49793937-49793956 | MS.gene98589:CDS | 30.0% |
!! | ATGAACTAGATAGAGGTATT+GGG | + | chr4.2:49795784-49795803 | MS.gene98589:CDS | 30.0% |
!!! | AAATTACATGTTTTGGTGGT+TGG | + | chr4.2:49795243-49795262 | MS.gene98589:intron | 30.0% |
AACATGAATAACGGCAATAG+AGG | + | chr4.2:49796170-49796189 | MS.gene98589:CDS | 35.0% | |
AAGTATGTGAAGAGCTTGAA+AGG | + | chr4.2:49795724-49795743 | MS.gene98589:CDS | 35.0% | |
AATACTTCACGGCAATAACA+TGG | + | chr4.2:49794770-49794789 | MS.gene98589:intron | 35.0% | |
AGAGAAGAAATCATCGACAA+TGG | + | chr4.2:49795416-49795435 | MS.gene98589:CDS | 35.0% | |
AGAGGCTAAGTATCAATTTG+AGG | + | chr4.2:49795935-49795954 | MS.gene98589:CDS | 35.0% | |
AGTATGTGAAGAGCTTGAAA+GGG | + | chr4.2:49795725-49795744 | MS.gene98589:CDS | 35.0% | |
ATGTAACAGTCCTATTTCAG+AGG | + | chr4.2:49794172-49794191 | MS.gene98589:CDS | 35.0% | |
ATGTGGTGAGCATATCATAT+TGG | + | chr4.2:49794608-49794627 | MS.gene98589:intron | 35.0% | |
CAAAGTCGATGAATACTTCA+CGG | + | chr4.2:49794759-49794778 | MS.gene98589:intron | 35.0% | |
CAATATTACGCTTGTATGAG+TGG | + | chr4.2:49794633-49794652 | MS.gene98589:intron | 35.0% | |
CACTCATACAAGCGTAATAT+TGG | - | chr4.2:49794635-49794654 | None:intergenic | 35.0% | |
CTTGAAATAGACCTATTGCT+TGG | - | chr4.2:49796449-49796468 | None:intergenic | 35.0% | |
GAAATTCCAGTTTCAAGAAG+AGG | + | chr4.2:49796321-49796340 | MS.gene98589:CDS | 35.0% | |
GACATCGAAGAAGATTCTTA+AGG | + | chr4.2:49795371-49795390 | MS.gene98589:CDS | 35.0% | |
GCCAATGATTAATCTCTATC+AGG | - | chr4.2:49794740-49794759 | None:intergenic | 35.0% | |
GTAGTAGTTGAAAAGGAAGA+TGG | + | chr4.2:49794889-49794908 | MS.gene98589:intron | 35.0% | |
GTTTGAAGGACATAATGACT+CGG | + | chr4.2:49796112-49796131 | MS.gene98589:CDS | 35.0% | |
TAAGAAGATTGCCCTAGAAA+TGG | + | chr4.2:49795677-49795696 | MS.gene98589:CDS | 35.0% | |
TACTACATCTTCACCTTCTA+TGG | + | chr4.2:49793896-49793915 | MS.gene98589:CDS | 35.0% | |
TAGTAATAACCATGACCTCA+TGG | + | chr4.2:49795057-49795076 | MS.gene98589:intron | 35.0% | |
TCATGTTCAGTTCAATGGAT+TGG | - | chr4.2:49796157-49796176 | None:intergenic | 35.0% | |
TCCTTCTCTTTATCTTTGCA+GGG | - | chr4.2:49793966-49793985 | None:intergenic | 35.0% | |
TGAAGAAGTGGAAAAAGAGA+GGG | + | chr4.2:49795857-49795876 | MS.gene98589:CDS | 35.0% | |
TTACAGTGGAGAAGAAGTTA+AGG | + | chr4.2:49795634-49795653 | MS.gene98589:CDS | 35.0% | |
TTCCAAAATGCAGAGTTTGA+AGG | + | chr4.2:49796098-49796117 | MS.gene98589:CDS | 35.0% | |
! | AATTTGAAGCAAGAAGCTGA+AGG | + | chr4.2:49796563-49796582 | MS.gene98589:CDS | 35.0% |
! | CAACTGACAAAGAAAGTACA+GGG | + | chr4.2:49796249-49796268 | MS.gene98589:CDS | 35.0% |
! | CAATGATTTGCATCCTTCAA+GGG | + | chr4.2:49794031-49794050 | MS.gene98589:CDS | 35.0% |
! | CAGATTCAAGAGAGCTATTT+TGG | + | chr4.2:49793824-49793843 | MS.gene98589:CDS | 35.0% |
! | CTTTTACACTAGCCATTTCT+AGG | - | chr4.2:49795692-49795711 | None:intergenic | 35.0% |
! | CTTTTGTATTCTACAGCTTC+AGG | + | chr4.2:49793936-49793955 | MS.gene98589:CDS | 35.0% |
! | GATGAACTAGATAGAGGTAT+TGG | + | chr4.2:49795783-49795802 | MS.gene98589:CDS | 35.0% |
! | TCAACTGACAAAGAAAGTAC+AGG | + | chr4.2:49796248-49796267 | MS.gene98589:CDS | 35.0% |
! | TCAATGATTTGCATCCTTCA+AGG | + | chr4.2:49794030-49794049 | MS.gene98589:CDS | 35.0% |
! | TCGTTGAATTTTGTAGACTC+CGG | - | chr4.2:49796044-49796063 | None:intergenic | 35.0% |
! | TCTGAAATAGGACTGTTACA+TGG | - | chr4.2:49794173-49794192 | None:intergenic | 35.0% |
!! | AAAACTTGCTGCTTCTTTGT+GGG | + | chr4.2:49794004-49794023 | MS.gene98589:CDS | 35.0% |
!! | AAAGCGTTTTGCAGAAGAAA+AGG | + | chr4.2:49795548-49795567 | MS.gene98589:CDS | 35.0% |
!! | TCTCTCTAAGACCTTCTTTA+AGG | - | chr4.2:49793737-49793756 | None:intergenic | 35.0% |
!! | TGAACTAGATAGAGGTATTG+GGG | + | chr4.2:49795785-49795804 | MS.gene98589:CDS | 35.0% |
!! | TTTCTAGATCAGGTTTGTTG+AGG | + | chr4.2:49794132-49794151 | MS.gene98589:CDS | 35.0% |
ACCCTGCAAAGATAAAGAGA+AGG | + | chr4.2:49793962-49793981 | MS.gene98589:CDS | 40.0% | |
AGTCCAAATGAAGCTTTCAG+AGG | + | chr4.2:49795917-49795936 | MS.gene98589:CDS | 40.0% | |
AGTTATCCAAGCGAAAAGGA+TGG | + | chr4.2:49796203-49796222 | MS.gene98589:CDS | 40.0% | |
ATCCTCATCTTCATCTTCCT+TGG | + | chr4.2:49793791-49793810 | MS.gene98589:CDS | 40.0% | |
ATGGAGTTATCCAAGCGAAA+AGG | + | chr4.2:49796199-49796218 | MS.gene98589:CDS | 40.0% | |
CAAATCCCTCTTCTTGAAAC+TGG | - | chr4.2:49796330-49796349 | None:intergenic | 40.0% | |
CAGTTTCAAGAAGAGGGATT+TGG | + | chr4.2:49796328-49796347 | MS.gene98589:CDS | 40.0% | |
CCAGAACGACATTGAGTATA+TGG | + | chr4.2:49795524-49795543 | MS.gene98589:CDS | 40.0% | |
CCATATACTCAATGTCGTTC+TGG | - | chr4.2:49795527-49795546 | None:intergenic | 40.0% | |
CTCCTTCTCTTTATCTTTGC+AGG | - | chr4.2:49793967-49793986 | None:intergenic | 40.0% | |
CTGCAAAGATAAAGAGAAGG+AGG | + | chr4.2:49793965-49793984 | MS.gene98589:CDS | 40.0% | |
CTGTTACATGGATCTGACAT+AGG | - | chr4.2:49794161-49794180 | None:intergenic | 40.0% | |
CTTTCACTAGTACACTGCAA+AGG | - | chr4.2:49796506-49796525 | None:intergenic | 40.0% | |
GAATCTGTATCTTCTAGCCA+AGG | - | chr4.2:49793811-49793830 | None:intergenic | 40.0% | |
GATGAGATCAGTGATTTCTG+AGG | - | chr4.2:49795085-49795104 | None:intergenic | 40.0% | |
GGAGGAAATGAAAAAGGAGT+CGG | + | chr4.2:49795824-49795843 | MS.gene98589:CDS | 40.0% | |
GGTTAAAGTTCGTGAAGAAG+TGG | + | chr4.2:49795845-49795864 | MS.gene98589:CDS | 40.0% | |
GGTTTCAAATTCAAGTCCTG+TGG | + | chr4.2:49794681-49794700 | MS.gene98589:intron | 40.0% | |
GTGAAGAAGTGGAAAAAGAG+AGG | + | chr4.2:49795856-49795875 | MS.gene98589:CDS | 40.0% | |
GTTACAGAAGAACAGTGTCA+GGG | + | chr4.2:49794318-49794337 | MS.gene98589:CDS | 40.0% | |
TCAAATTCAAGTCCTGTGGA+TGG | + | chr4.2:49794685-49794704 | MS.gene98589:intron | 40.0% | |
TCTCTATCAGGAAACTTGGT+TGG | - | chr4.2:49794728-49794747 | None:intergenic | 40.0% | |
TGTGTAGTGTTCTCCATAGA+AGG | - | chr4.2:49793912-49793931 | None:intergenic | 40.0% | |
TTACATGGATCTGACATAGG+TGG | - | chr4.2:49794158-49794177 | None:intergenic | 40.0% | |
TTATCTCATCCACTTCGTTC+TGG | + | chr4.2:49794341-49794360 | MS.gene98589:CDS | 40.0% | |
TTGAATTTCTCTCTCGAGCT+CGG | + | chr4.2:49796399-49796418 | MS.gene98589:CDS | 40.0% | |
TTTAGTGAAGTTCCATCCAC+AGG | - | chr4.2:49794700-49794719 | None:intergenic | 40.0% | |
! | GCTAAGAGCTTTTCTAGATC+AGG | + | chr4.2:49794122-49794141 | MS.gene98589:CDS | 40.0% |
! | GTCCTTCAAACTCTGCATTT+TGG | - | chr4.2:49796103-49796122 | None:intergenic | 40.0% |
! | TAGCCTCTGAAAGCTTCATT+TGG | - | chr4.2:49795923-49795942 | None:intergenic | 40.0% |
! | TTTTGACCATCCTTTTCGCT+TGG | - | chr4.2:49796212-49796231 | None:intergenic | 40.0% |
!! | AGGAAGATGGACTGCAATAA+TGG | + | chr4.2:49794902-49794921 | MS.gene98589:intron | 40.0% |
!! | GAAAACTTGCTGCTTCTTTG+TGG | + | chr4.2:49794003-49794022 | MS.gene98589:CDS | 40.0% |
!! | TACTTCTAGCTTCCTTCAGA+TGG | - | chr4.2:49795344-49795363 | None:intergenic | 40.0% |
!! | TTTTGGCTGGAAAGAAAGGA+GGG | + | chr4.2:49793841-49793860 | MS.gene98589:CDS | 40.0% |
!!! | ATTTTGGCTGGAAAGAAAGG+AGG | + | chr4.2:49793840-49793859 | MS.gene98589:CDS | 40.0% |
!!! | GCTATTTTGGCTGGAAAGAA+AGG | + | chr4.2:49793837-49793856 | MS.gene98589:CDS | 40.0% |
!!! | TAGTAGCTTTTCAGGTGCAT+TGG | + | chr4.2:49795011-49795030 | MS.gene98589:intron | 40.0% |
!!! | TTCAAGAGAGCTATTTTGGC+TGG | + | chr4.2:49793828-49793847 | MS.gene98589:CDS | 40.0% |
AAGTCCTTCTTGACCCTTGA+AGG | - | chr4.2:49794047-49794066 | None:intergenic | 45.0% | |
ACGGCAATAGAGGATCAGAA+TGG | + | chr4.2:49796180-49796199 | MS.gene98589:CDS | 45.0% | |
AGAAAATGGGGATGCTTCTC+CGG | + | chr4.2:49796022-49796041 | MS.gene98589:CDS | 45.0% | |
AGCCAAGGAAGATGAAGATG+AGG | - | chr4.2:49793796-49793815 | None:intergenic | 45.0% | |
GAAGAATAGTGGCAAATGCG+CGG | + | chr4.2:49795305-49795324 | MS.gene98589:intron | 45.0% | |
GCTGGTGGAGGAAATGAAAA+AGG | + | chr4.2:49795818-49795837 | MS.gene98589:CDS | 45.0% | |
GGATGGAACTTCACTAAACG+TGG | + | chr4.2:49794702-49794721 | MS.gene98589:intron | 45.0% | |
GGTTACAGAAGAACAGTGTC+AGG | + | chr4.2:49794317-49794336 | MS.gene98589:CDS | 45.0% | |
TACGCTTGTATGAGTGGAAC+TGG | + | chr4.2:49794639-49794658 | MS.gene98589:intron | 45.0% | |
TCTAACGGTCTCAACTCTCA+TGG | - | chr4.2:49794947-49794966 | None:intergenic | 45.0% | |
TGAGCAAATGAGAAGCTGCA+AGG | + | chr4.2:49794073-49794092 | MS.gene98589:CDS | 45.0% | |
TGTAGCTGAAGAGCTTACAG+TGG | + | chr4.2:49795620-49795639 | MS.gene98589:CDS | 45.0% | |
TTGCAGAAGAAAAGGCTGCA+TGG | + | chr4.2:49795556-49795575 | MS.gene98589:CDS | 45.0% | |
TTGTATGAGTGGAACTGGAC+TGG | + | chr4.2:49794644-49794663 | MS.gene98589:intron | 45.0% | |
! | AGGACATAATGACTCGGATG+AGG | + | chr4.2:49796118-49796137 | MS.gene98589:CDS | 45.0% |
! | CTGACAAAGAAAGTACAGGG+AGG | + | chr4.2:49796252-49796271 | MS.gene98589:CDS | 45.0% |
!! | GTAGTACTAGTCTTCCACAG+TGG | - | chr4.2:49793882-49793901 | None:intergenic | 45.0% |
!!! | ACATGTTTTGGTGGTTGGCA+AGG | + | chr4.2:49795248-49795267 | MS.gene98589:intron | 45.0% |
AATAGTGGCAAATGCGCGGT+TGG | + | chr4.2:49795309-49795328 | MS.gene98589:CDS | 50.0% | |
AGCTCGGATACAAGACGATG+AGG | + | chr4.2:49796415-49796434 | MS.gene98589:CDS | 50.0% | |
AGGACGGAACTCCAAGCAAT+AGG | + | chr4.2:49796435-49796454 | MS.gene98589:CDS | 50.0% | |
AGTGAGCTTGATCGGGTTTG+TGG | + | chr4.2:49795459-49795478 | MS.gene98589:CDS | 50.0% | |
CGGATACAAGACGATGAGGA+CGG | + | chr4.2:49796419-49796438 | MS.gene98589:CDS | 50.0% | |
CTCTCGGAAGTGAGCTTGAT+CGG | + | chr4.2:49795451-49795470 | MS.gene98589:CDS | 50.0% | |
GCATCCTTCAAGGGTCAAGA+AGG | + | chr4.2:49794040-49794059 | MS.gene98589:CDS | 50.0% | |
GGACTGGAATCCCTTAAGCA+AGG | + | chr4.2:49794660-49794679 | MS.gene98589:intron | 50.0% | |
TCATCCACTTCGTTCTGGTG+TGG | + | chr4.2:49794346-49794365 | MS.gene98589:CDS | 50.0% | |
TCTCGGAAGTGAGCTTGATC+GGG | + | chr4.2:49795452-49795471 | MS.gene98589:CDS | 50.0% | |
TGGAGTGAAGAGCCATCTGA+AGG | + | chr4.2:49795329-49795348 | MS.gene98589:CDS | 50.0% | |
! | CTAGTCTTCCACAGTGGAAC+TGG | - | chr4.2:49793876-49793895 | None:intergenic | 50.0% |
! | GTGATTTCTGAGGAGCCATG+AGG | - | chr4.2:49795075-49795094 | None:intergenic | 50.0% |
! | GTTAGCAGATGTTTTGCGCG+AGG | + | chr4.2:49795890-49795909 | MS.gene98589:CDS | 50.0% |
AAGCTCACTTCCGAGAGCCA+AGG | - | chr4.2:49795448-49795467 | None:intergenic | 55.0% | |
ACTTCCGAGAGCCAAGGTGA+GGG | - | chr4.2:49795442-49795461 | None:intergenic | 55.0% | |
ATCGACAATGGCCCTCACCT+TGG | + | chr4.2:49795428-49795447 | MS.gene98589:CDS | 55.0% | |
CTTCCACAGTGGAACTGGTG+TGG | - | chr4.2:49793871-49793890 | None:intergenic | 55.0% | |
TATTGGGGAAGACAGAGCGC+TGG | + | chr4.2:49795800-49795819 | MS.gene98589:CDS | 55.0% | |
TCTGAGGAGCCATGAGGTCA+TGG | - | chr4.2:49795069-49795088 | None:intergenic | 55.0% | |
CACTTCCGAGAGCCAAGGTG+AGG | - | chr4.2:49795443-49795462 | None:intergenic | 60.0% | |
CCACAGTGGAACTGGTGTGG+TGG | - | chr4.2:49793868-49793887 | None:intergenic | 60.0% | |
CCACCACACCAGTTCCACTG+TGG | + | chr4.2:49793865-49793884 | MS.gene98589:CDS | 60.0% | |
GCGTCCACACCAGAACGAAG+TGG | - | chr4.2:49794353-49794372 | None:intergenic | 60.0% | |
! | ATGGCCCTCACCTTGGCTCT+CGG | + | chr4.2:49795435-49795454 | MS.gene98589:CDS | 60.0% |
!! | GGAAGACAGAGCGCTGGTGG+AGG | + | chr4.2:49795806-49795825 | MS.gene98589:CDS | 65.0% |
!! | TGGGGAAGACAGAGCGCTGG+TGG | + | chr4.2:49795803-49795822 | MS.gene98589:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 49793702 | 49796631 | 49793702 | ID=MS.gene98589 |
chr4.2 | mRNA | 49793702 | 49796631 | 49793702 | ID=MS.gene98589.t1;Parent=MS.gene98589 |
chr4.2 | exon | 49793702 | 49794193 | 49793702 | ID=MS.gene98589.t1.exon1;Parent=MS.gene98589.t1 |
chr4.2 | CDS | 49793702 | 49794193 | 49793702 | ID=cds.MS.gene98589.t1;Parent=MS.gene98589.t1 |
chr4.2 | exon | 49794293 | 49794397 | 49794293 | ID=MS.gene98589.t1.exon2;Parent=MS.gene98589.t1 |
chr4.2 | CDS | 49794293 | 49794397 | 49794293 | ID=cds.MS.gene98589.t1;Parent=MS.gene98589.t1 |
chr4.2 | exon | 49795306 | 49796631 | 49795306 | ID=MS.gene98589.t1.exon3;Parent=MS.gene98589.t1 |
chr4.2 | CDS | 49795306 | 49796631 | 49795306 | ID=cds.MS.gene98589.t1;Parent=MS.gene98589.t1 |
Gene Sequence |
Protein sequence |