AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98589


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98589.t1 MTR_4g052400 95.000 640 31 1 1 640 1 639 0.0 1194
MS.gene98589.t1 MTR_4g052400 94.759 477 24 1 164 640 2 477 0.0 885
MS.gene98589.t1 MTR_2g086890 50.825 667 263 21 1 628 1 641 5.89e-174 509
MS.gene98589.t1 MTR_7g105430 42.804 542 261 17 19 524 4 532 6.48e-109 343
MS.gene98589.t1 MTR_5g009750 30.370 405 257 8 45 436 20 412 1.23e-40 157
MS.gene98589.t1 MTR_3g051430 38.249 217 129 3 219 435 199 410 3.44e-35 142
MS.gene98589.t1 MTR_5g092610 39.524 210 119 2 228 437 201 402 1.46e-30 127
MS.gene98589.t1 MTR_8g028230 26.683 416 261 11 42 449 18 397 1.12e-26 115
MS.gene98589.t1 MTR_2g023020 34.896 192 117 1 256 439 176 367 8.91e-24 105
MS.gene98589.t1 MTR_8g028230 29.600 250 168 4 206 449 109 356 1.01e-21 99.8
MS.gene98589.t1 MTR_8g028230 29.600 250 168 4 206 449 63 310 1.66e-21 98.6
MS.gene98589.t1 MTR_8g028230 29.600 250 168 4 206 449 36 283 3.11e-21 97.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98589.t1 AT3G11590 42.500 520 265 10 22 514 15 527 1.53e-103 327
MS.gene98589.t1 AT3G11590 44.737 342 178 5 180 514 28 365 2.75e-72 241
MS.gene98589.t1 AT5G22310 36.400 500 218 16 23 512 9 418 7.67e-59 205
MS.gene98589.t1 AT1G50660 37.156 218 135 1 220 437 213 428 3.74e-39 154
MS.gene98589.t1 AT3G20350 41.317 167 98 0 271 437 239 405 1.18e-32 134
MS.gene98589.t1 AT5G41620 27.912 455 270 15 96 511 44 479 1.43e-21 99.8
MS.gene98589.t1 AT5G41620 28.990 307 195 7 214 511 70 362 5.03e-20 94.4
MS.gene98589.t1 AT5G41620 28.990 307 195 7 214 511 70 362 5.03e-20 94.4
MS.gene98589.t1 AT5G41620 28.990 307 195 7 214 511 28 320 9.14e-20 93.2
MS.gene98589.t1 AT1G64180 28.165 387 226 15 97 460 61 418 1.30e-16 84.0
MS.gene98589.t1 AT2G46250 26.720 378 217 13 42 415 13 334 9.07e-14 74.7

Find 115 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTCTAAGACCTTCTTTA+AGG 0.119885 4.2:-49793734 None:intergenic
CAGATTCAAGAGAGCTATTT+TGG 0.143793 4.2:+49793824 MS.gene98589:CDS
GTCCTTCAAACTCTGCATTT+TGG 0.173945 4.2:-49796100 None:intergenic
AGAACTAGAGATGAAGAAAA+TGG 0.210580 4.2:+49796008 MS.gene98589:CDS
CTCCTTCTCTTTATCTTTGC+AGG 0.213342 4.2:-49793964 None:intergenic
ATCTTGACCTTCTTGAATAT+TGG 0.229109 4.2:-49796354 None:intergenic
TAGAAATTTACCTCTGAAAT+AGG 0.248068 4.2:-49794182 None:intergenic
TACTACATCTTCACCTTCTA+TGG 0.268315 4.2:+49793896 MS.gene98589:CDS
CAAATCCCTCTTCTTGAAAC+TGG 0.309352 4.2:-49796327 None:intergenic
CCATATACTCAATGTCGTTC+TGG 0.316655 4.2:-49795524 None:intergenic
CCAGAACGACATTGAGTATA+TGG 0.324326 4.2:+49795524 MS.gene98589:CDS
CAGTTTCAAGAAGAGGGATT+TGG 0.331048 4.2:+49796328 MS.gene98589:CDS
AAGTCCTTCTTGACCCTTGA+AGG 0.334027 4.2:-49794044 None:intergenic
GTTATTCATGTTCAGTTCAA+TGG 0.342674 4.2:-49796159 None:intergenic
ATCCTCATCTTCATCTTCCT+TGG 0.350860 4.2:+49793791 MS.gene98589:CDS
CTCTCGGAAGTGAGCTTGAT+CGG 0.359285 4.2:+49795451 MS.gene98589:CDS
GATGAACTAGATAGAGGTAT+TGG 0.368167 4.2:+49795783 MS.gene98589:CDS
GAACTAGAGATGAAGAAAAT+GGG 0.372973 4.2:+49796009 MS.gene98589:CDS
ATGAACTAGATAGAGGTATT+GGG 0.375325 4.2:+49795784 MS.gene98589:CDS
TAGCCTCTGAAAGCTTCATT+TGG 0.383384 4.2:-49795920 None:intergenic
TTATCTCATCCACTTCGTTC+TGG 0.386985 4.2:+49794341 MS.gene98589:CDS
AAATTCTCTTCTTGTCTTTG+AGG 0.399203 4.2:+49796535 MS.gene98589:CDS
GCTGGTGGAGGAAATGAAAA+AGG 0.402845 4.2:+49795818 MS.gene98589:CDS
AATTCTCTTCTTGTCTTTGA+GGG 0.407799 4.2:+49796536 MS.gene98589:CDS
TCATGTTCAGTTCAATGGAT+TGG 0.409865 4.2:-49796154 None:intergenic
CTTGTATAAGTTTGTCAAGT+AGG 0.416680 4.2:-49795482 None:intergenic
CTAGTCTTCCACAGTGGAAC+TGG 0.417773 4.2:-49793873 None:intergenic
GACATCGAAGAAGATTCTTA+AGG 0.419711 4.2:+49795371 MS.gene98589:CDS
AAAACTTGCTGCTTCTTTGT+GGG 0.423406 4.2:+49794004 MS.gene98589:CDS
GAAAACTTGCTGCTTCTTTG+TGG 0.429207 4.2:+49794003 MS.gene98589:CDS
GAGAAATTCAATTGAACTAT+CGG 0.431627 4.2:-49796387 None:intergenic
ATCTTATGAGAGAATTCAAT+GGG 0.436305 4.2:+49796277 MS.gene98589:CDS
AGAAAATGGGGATGCTTCTC+CGG 0.438097 4.2:+49796022 MS.gene98589:CDS
AGTGAGCTTGATCGGGTTTG+TGG 0.441743 4.2:+49795459 MS.gene98589:CDS
TAAGAAGATTGCCCTAGAAA+TGG 0.445287 4.2:+49795677 MS.gene98589:CDS
TTACAGTGGAGAAGAAGTTA+AGG 0.447721 4.2:+49795634 MS.gene98589:CDS
GGTTACAGAAGAACAGTGTC+AGG 0.450224 4.2:+49794317 MS.gene98589:CDS
TCTCGGAAGTGAGCTTGATC+GGG 0.453424 4.2:+49795452 MS.gene98589:CDS
AGATTTCACACAACAAAATC+AGG 0.460418 4.2:+49793754 MS.gene98589:CDS
TTCCAAAATGCAGAGTTTGA+AGG 0.463631 4.2:+49796098 MS.gene98589:CDS
TCAATGATTTGCATCCTTCA+AGG 0.464131 4.2:+49794030 MS.gene98589:CDS
AGGACGGAACTCCAAGCAAT+AGG 0.467947 4.2:+49796435 MS.gene98589:CDS
TTTGAAATGCAGAAGAATAG+TGG 0.468349 4.2:+49795294 MS.gene98589:intron
AGAGGCTAAGTATCAATTTG+AGG 0.476141 4.2:+49795935 MS.gene98589:CDS
AACATGAATAACGGCAATAG+AGG 0.482536 4.2:+49796170 MS.gene98589:CDS
AGAAATTCAATTGAACTATC+GGG 0.482943 4.2:-49796386 None:intergenic
GAAATTCCAGTTTCAAGAAG+AGG 0.486758 4.2:+49796321 MS.gene98589:CDS
CTTGAAATAGACCTATTGCT+TGG 0.494567 4.2:-49796446 None:intergenic
TTGATTATGCAGAGAATGAA+AGG 0.495962 4.2:+49794281 MS.gene98589:intron
TTGAATTTCTCTCTCGAGCT+CGG 0.496584 4.2:+49796399 MS.gene98589:CDS
TCCTTCTCTTTATCTTTGCA+GGG 0.498201 4.2:-49793963 None:intergenic
TACTTCTAGCTTCCTTCAGA+TGG 0.502252 4.2:-49795341 None:intergenic
AAATTCCAGTTTCAAGAAGA+GGG 0.503620 4.2:+49796322 MS.gene98589:CDS
ATGAAAGGATTTGAAAGTGA+TGG 0.504945 4.2:+49794296 MS.gene98589:CDS
AAGTATGTGAAGAGCTTGAA+AGG 0.517210 4.2:+49795724 MS.gene98589:CDS
TTGGATACCAATATTCAAGA+AGG 0.521415 4.2:+49796347 MS.gene98589:CDS
GCATCCTTCAAGGGTCAAGA+AGG 0.522100 4.2:+49794040 MS.gene98589:CDS
TATCAGTGTTAGTTTAAATG+AGG 0.522803 4.2:+49794376 MS.gene98589:CDS
AATCTTATGAGAGAATTCAA+TGG 0.524217 4.2:+49796276 MS.gene98589:CDS
CAATGATTTGCATCCTTCAA+GGG 0.529504 4.2:+49794031 MS.gene98589:CDS
AGTATGTGAAGAGCTTGAAA+GGG 0.530337 4.2:+49795725 MS.gene98589:CDS
ATGGCCCTCACCTTGGCTCT+CGG 0.531209 4.2:+49795435 MS.gene98589:CDS
ATTGAACTGAACATGAATAA+CGG 0.531601 4.2:+49796161 MS.gene98589:CDS
ATCGACAATGGCCCTCACCT+TGG 0.536907 4.2:+49795428 MS.gene98589:CDS
ATGGAGTTATCCAAGCGAAA+AGG 0.537795 4.2:+49796199 MS.gene98589:CDS
TGAACTAGATAGAGGTATTG+GGG 0.538650 4.2:+49795785 MS.gene98589:CDS
ACAAACAATAACCTTAAAGA+AGG 0.541262 4.2:+49793723 MS.gene98589:CDS
TCAACTGACAAAGAAAGTAC+AGG 0.541285 4.2:+49796248 MS.gene98589:CDS
TGGGGAAGACAGAGCGCTGG+TGG 0.546628 4.2:+49795803 MS.gene98589:CDS
ATTTGTGATGAACTAGATAG+AGG 0.552401 4.2:+49795777 MS.gene98589:CDS
TCTGAAATAGGACTGTTACA+TGG 0.558134 4.2:-49794170 None:intergenic
AATAGTGGCAAATGCGCGGT+TGG 0.558575 4.2:+49795309 MS.gene98589:CDS
CACTTCCGAGAGCCAAGGTG+AGG 0.561898 4.2:-49795440 None:intergenic
GGTTAAAGTTCGTGAAGAAG+TGG 0.574473 4.2:+49795845 MS.gene98589:CDS
GGAAGACAGAGCGCTGGTGG+AGG 0.574780 4.2:+49795806 MS.gene98589:CDS
TTTCTAGATCAGGTTTGTTG+AGG 0.578053 4.2:+49794132 MS.gene98589:CDS
CCACAGTGGAACTGGTGTGG+TGG 0.578057 4.2:-49793865 None:intergenic
AACTAGAGATGAAGAAAATG+GGG 0.583537 4.2:+49796010 MS.gene98589:CDS
TGTGTAGTGTTCTCCATAGA+AGG 0.588791 4.2:-49793909 None:intergenic
AGCCAAGGAAGATGAAGATG+AGG 0.590023 4.2:-49793793 None:intergenic
TCATCCACTTCGTTCTGGTG+TGG 0.594511 4.2:+49794346 MS.gene98589:CDS
CTGTTACATGGATCTGACAT+AGG 0.596821 4.2:-49794158 None:intergenic
GTTTGTTTGATTATGACAAG+AGG 0.599018 4.2:-49793706 None:intergenic
CAACTGACAAAGAAAGTACA+GGG 0.604741 4.2:+49796249 MS.gene98589:CDS
GAATCTGTATCTTCTAGCCA+AGG 0.604749 4.2:-49793808 None:intergenic
AGGACATAATGACTCGGATG+AGG 0.605873 4.2:+49796118 MS.gene98589:CDS
TGGAGTGAAGAGCCATCTGA+AGG 0.607672 4.2:+49795329 MS.gene98589:CDS
ACTTCCGAGAGCCAAGGTGA+GGG 0.608096 4.2:-49795439 None:intergenic
TTGCAGAAGAAAAGGCTGCA+TGG 0.610809 4.2:+49795556 MS.gene98589:CDS
CTGCAAAGATAAAGAGAAGG+AGG 0.614526 4.2:+49793965 MS.gene98589:CDS
AGTTAAGGAAACAAACTGAA+AGG 0.615070 4.2:+49795649 MS.gene98589:CDS
CTTCCACAGTGGAACTGGTG+TGG 0.616603 4.2:-49793868 None:intergenic
ACGGCAATAGAGGATCAGAA+TGG 0.622780 4.2:+49796180 MS.gene98589:CDS
AAGCTCACTTCCGAGAGCCA+AGG 0.624529 4.2:-49795445 None:intergenic
TGAGCAAATGAGAAGCTGCA+AGG 0.629237 4.2:+49794073 MS.gene98589:CDS
GCGTCCACACCAGAACGAAG+TGG 0.631718 4.2:-49794350 None:intergenic
TATTGGGGAAGACAGAGCGC+TGG 0.631890 4.2:+49795800 MS.gene98589:CDS
AGAGAAGAAATCATCGACAA+TGG 0.635957 4.2:+49795416 MS.gene98589:CDS
AGTCCAAATGAAGCTTTCAG+AGG 0.636988 4.2:+49795917 MS.gene98589:CDS
ATGTAACAGTCCTATTTCAG+AGG 0.639090 4.2:+49794172 MS.gene98589:CDS
CGGATACAAGACGATGAGGA+CGG 0.655237 4.2:+49796419 MS.gene98589:CDS
CTTTCACTAGTACACTGCAA+AGG 0.656661 4.2:-49796503 None:intergenic
ACCCTGCAAAGATAAAGAGA+AGG 0.657910 4.2:+49793962 MS.gene98589:CDS
AGTTATCCAAGCGAAAAGGA+TGG 0.665163 4.2:+49796203 MS.gene98589:CDS
GAAGAATAGTGGCAAATGCG+CGG 0.672467 4.2:+49795305 MS.gene98589:intron
TGTAGCTGAAGAGCTTACAG+TGG 0.676427 4.2:+49795620 MS.gene98589:CDS
AGCTCGGATACAAGACGATG+AGG 0.678318 4.2:+49796415 MS.gene98589:CDS
TTACATGGATCTGACATAGG+TGG 0.679281 4.2:-49794155 None:intergenic
GTTTGAAGGACATAATGACT+CGG 0.680846 4.2:+49796112 MS.gene98589:CDS
AATTTGAAGCAAGAAGCTGA+AGG 0.689873 4.2:+49796563 MS.gene98589:CDS
GTTACAGAAGAACAGTGTCA+GGG 0.691405 4.2:+49794318 MS.gene98589:CDS
CCACCACACCAGTTCCACTG+TGG 0.727949 4.2:+49793865 MS.gene98589:CDS
CTGACAAAGAAAGTACAGGG+AGG 0.786919 4.2:+49796252 MS.gene98589:CDS
TCTTATGAGAGAATTCAATG+GGG 0.795055 4.2:+49796278 MS.gene98589:CDS
GTAGTACTAGTCTTCCACAG+TGG 0.798955 4.2:-49793879 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAAGAAAATAAAAAT+TGG + chr4.2:49794795-49794814 MS.gene98589:intron 10.0%
!!! TAATTTAAAATTACATGTTT+TGG + chr4.2:49795236-49795255 MS.gene98589:intron 10.0%
!!! TAATTTTATTGTAAGAAAAT+AGG - chr4.2:49794986-49795005 None:intergenic 10.0%
!! ACATATCTAAATTAGAAATG+TGG + chr4.2:49794591-49794610 MS.gene98589:intron 20.0%
!! TCTCTCAAATAAATATCTAA+CGG - chr4.2:49794962-49794981 None:intergenic 20.0%
!!! CTTTTTTTGTGTCAAAATTT+GGG + chr4.2:49794855-49794874 MS.gene98589:intron 20.0%
!!! TCATTTTGTATTGTGTTATT+TGG + chr4.2:49794224-49794243 MS.gene98589:intron 20.0%
!!! TTAATTTGTAGTAGTTGAAA+AGG + chr4.2:49794882-49794901 MS.gene98589:intron 20.0%
!!! TTAATTTTTAGTAGCTTTTC+AGG + chr4.2:49795003-49795022 MS.gene98589:intron 20.0%
!!! TTGATGATTATGAAAATGAT+GGG - chr4.2:49794821-49794840 None:intergenic 20.0%
!!! TTTAAAATTACATGTTTTGG+TGG + chr4.2:49795239-49795258 MS.gene98589:intron 20.0%
!!! TTTTTTTGTGTCAAAATTTG+GGG + chr4.2:49794856-49794875 MS.gene98589:intron 20.0%
! AATCTTATGAGAGAATTCAA+TGG + chr4.2:49796276-49796295 MS.gene98589:CDS 25.0%
! ACAAACAATAACCTTAAAGA+AGG + chr4.2:49793723-49793742 MS.gene98589:CDS 25.0%
! AGAAATTCAATTGAACTATC+GGG - chr4.2:49796389-49796408 None:intergenic 25.0%
! ATCTTATGAGAGAATTCAAT+GGG + chr4.2:49796277-49796296 MS.gene98589:CDS 25.0%
! ATTGAACTGAACATGAATAA+CGG + chr4.2:49796161-49796180 MS.gene98589:CDS 25.0%
! CAAAAAAAGGTTGAATAACT+AGG - chr4.2:49794844-49794863 None:intergenic 25.0%
! GAGAAATTCAATTGAACTAT+CGG - chr4.2:49796390-49796409 None:intergenic 25.0%
!! TATCAGTGTTAGTTTAAATG+AGG + chr4.2:49794376-49794395 MS.gene98589:CDS 25.0%
!!! CCAAATTTTGACACAAAAAA+AGG - chr4.2:49794857-49794876 None:intergenic 25.0%
!!! CCTTTTTTTGTGTCAAAATT+TGG + chr4.2:49794854-49794873 MS.gene98589:intron 25.0%
!!! GTTGATGATTATGAAAATGA+TGG - chr4.2:49794822-49794841 None:intergenic 25.0%
!!! TAGAAATTTACCTCTGAAAT+AGG - chr4.2:49794185-49794204 None:intergenic 25.0%
!!! TTTTTTGTGTCAAAATTTGG+GGG + chr4.2:49794857-49794876 MS.gene98589:intron 25.0%
AAATTCCAGTTTCAAGAAGA+GGG + chr4.2:49796322-49796341 MS.gene98589:CDS 30.0%
AAATTCTCTTCTTGTCTTTG+AGG + chr4.2:49796535-49796554 MS.gene98589:CDS 30.0%
AACTAGAGATGAAGAAAATG+GGG + chr4.2:49796010-49796029 MS.gene98589:CDS 30.0%
AATTCTCTTCTTGTCTTTGA+GGG + chr4.2:49796536-49796555 MS.gene98589:CDS 30.0%
AGAACTAGAGATGAAGAAAA+TGG + chr4.2:49796008-49796027 MS.gene98589:CDS 30.0%
AGATTTCACACAACAAAATC+AGG + chr4.2:49793754-49793773 MS.gene98589:CDS 30.0%
AGTTAAGGAAACAAACTGAA+AGG + chr4.2:49795649-49795668 MS.gene98589:CDS 30.0%
ATCTTGACCTTCTTGAATAT+TGG - chr4.2:49796357-49796376 None:intergenic 30.0%
ATGAAAGGATTTGAAAGTGA+TGG + chr4.2:49794296-49794315 MS.gene98589:CDS 30.0%
ATTTGTGATGAACTAGATAG+AGG + chr4.2:49795777-49795796 MS.gene98589:CDS 30.0%
CTTGTATAAGTTTGTCAAGT+AGG - chr4.2:49795485-49795504 None:intergenic 30.0%
GAACTAGAGATGAAGAAAAT+GGG + chr4.2:49796009-49796028 MS.gene98589:CDS 30.0%
GTTATTCATGTTCAGTTCAA+TGG - chr4.2:49796162-49796181 None:intergenic 30.0%
GTTTGTTTGATTATGACAAG+AGG - chr4.2:49793709-49793728 None:intergenic 30.0%
TAACAGCAGGCAAAATATAT+AGG + chr4.2:49795199-49795218 MS.gene98589:intron 30.0%
TCAATTGAAAAAGTAACAGC+AGG + chr4.2:49795186-49795205 MS.gene98589:intron 30.0%
TCCTGATAGAGATTAATCAT+TGG + chr4.2:49794736-49794755 MS.gene98589:intron 30.0%
TCTTATGAGAGAATTCAATG+GGG + chr4.2:49796278-49796297 MS.gene98589:CDS 30.0%
TTAATCTCTATCAGGAAACT+TGG - chr4.2:49794732-49794751 None:intergenic 30.0%
TTGATTATGCAGAGAATGAA+AGG + chr4.2:49794281-49794300 MS.gene98589:intron 30.0%
TTGGATACCAATATTCAAGA+AGG + chr4.2:49796347-49796366 MS.gene98589:CDS 30.0%
! CTCTTCAGCTACATTTTTAA+CGG - chr4.2:49795613-49795632 None:intergenic 30.0%
! GAATTTGAAACCTTGCTTAA+GGG - chr4.2:49794673-49794692 None:intergenic 30.0%
! TGAATTTGAAACCTTGCTTA+AGG - chr4.2:49794674-49794693 None:intergenic 30.0%
! TTTGAAATGCAGAAGAATAG+TGG + chr4.2:49795294-49795313 MS.gene98589:intron 30.0%
! TTTTACACTAGCCATTTCTA+GGG - chr4.2:49795691-49795710 None:intergenic 30.0%
! TTTTGTATTCTACAGCTTCA+GGG + chr4.2:49793937-49793956 MS.gene98589:CDS 30.0%
!! ATGAACTAGATAGAGGTATT+GGG + chr4.2:49795784-49795803 MS.gene98589:CDS 30.0%
!!! AAATTACATGTTTTGGTGGT+TGG + chr4.2:49795243-49795262 MS.gene98589:intron 30.0%
AACATGAATAACGGCAATAG+AGG + chr4.2:49796170-49796189 MS.gene98589:CDS 35.0%
AAGTATGTGAAGAGCTTGAA+AGG + chr4.2:49795724-49795743 MS.gene98589:CDS 35.0%
AATACTTCACGGCAATAACA+TGG + chr4.2:49794770-49794789 MS.gene98589:intron 35.0%
AGAGAAGAAATCATCGACAA+TGG + chr4.2:49795416-49795435 MS.gene98589:CDS 35.0%
AGAGGCTAAGTATCAATTTG+AGG + chr4.2:49795935-49795954 MS.gene98589:CDS 35.0%
AGTATGTGAAGAGCTTGAAA+GGG + chr4.2:49795725-49795744 MS.gene98589:CDS 35.0%
ATGTAACAGTCCTATTTCAG+AGG + chr4.2:49794172-49794191 MS.gene98589:CDS 35.0%
ATGTGGTGAGCATATCATAT+TGG + chr4.2:49794608-49794627 MS.gene98589:intron 35.0%
CAAAGTCGATGAATACTTCA+CGG + chr4.2:49794759-49794778 MS.gene98589:intron 35.0%
CAATATTACGCTTGTATGAG+TGG + chr4.2:49794633-49794652 MS.gene98589:intron 35.0%
CACTCATACAAGCGTAATAT+TGG - chr4.2:49794635-49794654 None:intergenic 35.0%
CTTGAAATAGACCTATTGCT+TGG - chr4.2:49796449-49796468 None:intergenic 35.0%
GAAATTCCAGTTTCAAGAAG+AGG + chr4.2:49796321-49796340 MS.gene98589:CDS 35.0%
GACATCGAAGAAGATTCTTA+AGG + chr4.2:49795371-49795390 MS.gene98589:CDS 35.0%
GCCAATGATTAATCTCTATC+AGG - chr4.2:49794740-49794759 None:intergenic 35.0%
GTAGTAGTTGAAAAGGAAGA+TGG + chr4.2:49794889-49794908 MS.gene98589:intron 35.0%
GTTTGAAGGACATAATGACT+CGG + chr4.2:49796112-49796131 MS.gene98589:CDS 35.0%
TAAGAAGATTGCCCTAGAAA+TGG + chr4.2:49795677-49795696 MS.gene98589:CDS 35.0%
TACTACATCTTCACCTTCTA+TGG + chr4.2:49793896-49793915 MS.gene98589:CDS 35.0%
TAGTAATAACCATGACCTCA+TGG + chr4.2:49795057-49795076 MS.gene98589:intron 35.0%
TCATGTTCAGTTCAATGGAT+TGG - chr4.2:49796157-49796176 None:intergenic 35.0%
TCCTTCTCTTTATCTTTGCA+GGG - chr4.2:49793966-49793985 None:intergenic 35.0%
TGAAGAAGTGGAAAAAGAGA+GGG + chr4.2:49795857-49795876 MS.gene98589:CDS 35.0%
TTACAGTGGAGAAGAAGTTA+AGG + chr4.2:49795634-49795653 MS.gene98589:CDS 35.0%
TTCCAAAATGCAGAGTTTGA+AGG + chr4.2:49796098-49796117 MS.gene98589:CDS 35.0%
! AATTTGAAGCAAGAAGCTGA+AGG + chr4.2:49796563-49796582 MS.gene98589:CDS 35.0%
! CAACTGACAAAGAAAGTACA+GGG + chr4.2:49796249-49796268 MS.gene98589:CDS 35.0%
! CAATGATTTGCATCCTTCAA+GGG + chr4.2:49794031-49794050 MS.gene98589:CDS 35.0%
! CAGATTCAAGAGAGCTATTT+TGG + chr4.2:49793824-49793843 MS.gene98589:CDS 35.0%
! CTTTTACACTAGCCATTTCT+AGG - chr4.2:49795692-49795711 None:intergenic 35.0%
! CTTTTGTATTCTACAGCTTC+AGG + chr4.2:49793936-49793955 MS.gene98589:CDS 35.0%
! GATGAACTAGATAGAGGTAT+TGG + chr4.2:49795783-49795802 MS.gene98589:CDS 35.0%
! TCAACTGACAAAGAAAGTAC+AGG + chr4.2:49796248-49796267 MS.gene98589:CDS 35.0%
! TCAATGATTTGCATCCTTCA+AGG + chr4.2:49794030-49794049 MS.gene98589:CDS 35.0%
! TCGTTGAATTTTGTAGACTC+CGG - chr4.2:49796044-49796063 None:intergenic 35.0%
! TCTGAAATAGGACTGTTACA+TGG - chr4.2:49794173-49794192 None:intergenic 35.0%
!! AAAACTTGCTGCTTCTTTGT+GGG + chr4.2:49794004-49794023 MS.gene98589:CDS 35.0%
!! AAAGCGTTTTGCAGAAGAAA+AGG + chr4.2:49795548-49795567 MS.gene98589:CDS 35.0%
!! TCTCTCTAAGACCTTCTTTA+AGG - chr4.2:49793737-49793756 None:intergenic 35.0%
!! TGAACTAGATAGAGGTATTG+GGG + chr4.2:49795785-49795804 MS.gene98589:CDS 35.0%
!! TTTCTAGATCAGGTTTGTTG+AGG + chr4.2:49794132-49794151 MS.gene98589:CDS 35.0%
ACCCTGCAAAGATAAAGAGA+AGG + chr4.2:49793962-49793981 MS.gene98589:CDS 40.0%
AGTCCAAATGAAGCTTTCAG+AGG + chr4.2:49795917-49795936 MS.gene98589:CDS 40.0%
AGTTATCCAAGCGAAAAGGA+TGG + chr4.2:49796203-49796222 MS.gene98589:CDS 40.0%
ATCCTCATCTTCATCTTCCT+TGG + chr4.2:49793791-49793810 MS.gene98589:CDS 40.0%
ATGGAGTTATCCAAGCGAAA+AGG + chr4.2:49796199-49796218 MS.gene98589:CDS 40.0%
CAAATCCCTCTTCTTGAAAC+TGG - chr4.2:49796330-49796349 None:intergenic 40.0%
CAGTTTCAAGAAGAGGGATT+TGG + chr4.2:49796328-49796347 MS.gene98589:CDS 40.0%
CCAGAACGACATTGAGTATA+TGG + chr4.2:49795524-49795543 MS.gene98589:CDS 40.0%
CCATATACTCAATGTCGTTC+TGG - chr4.2:49795527-49795546 None:intergenic 40.0%
CTCCTTCTCTTTATCTTTGC+AGG - chr4.2:49793967-49793986 None:intergenic 40.0%
CTGCAAAGATAAAGAGAAGG+AGG + chr4.2:49793965-49793984 MS.gene98589:CDS 40.0%
CTGTTACATGGATCTGACAT+AGG - chr4.2:49794161-49794180 None:intergenic 40.0%
CTTTCACTAGTACACTGCAA+AGG - chr4.2:49796506-49796525 None:intergenic 40.0%
GAATCTGTATCTTCTAGCCA+AGG - chr4.2:49793811-49793830 None:intergenic 40.0%
GATGAGATCAGTGATTTCTG+AGG - chr4.2:49795085-49795104 None:intergenic 40.0%
GGAGGAAATGAAAAAGGAGT+CGG + chr4.2:49795824-49795843 MS.gene98589:CDS 40.0%
GGTTAAAGTTCGTGAAGAAG+TGG + chr4.2:49795845-49795864 MS.gene98589:CDS 40.0%
GGTTTCAAATTCAAGTCCTG+TGG + chr4.2:49794681-49794700 MS.gene98589:intron 40.0%
GTGAAGAAGTGGAAAAAGAG+AGG + chr4.2:49795856-49795875 MS.gene98589:CDS 40.0%
GTTACAGAAGAACAGTGTCA+GGG + chr4.2:49794318-49794337 MS.gene98589:CDS 40.0%
TCAAATTCAAGTCCTGTGGA+TGG + chr4.2:49794685-49794704 MS.gene98589:intron 40.0%
TCTCTATCAGGAAACTTGGT+TGG - chr4.2:49794728-49794747 None:intergenic 40.0%
TGTGTAGTGTTCTCCATAGA+AGG - chr4.2:49793912-49793931 None:intergenic 40.0%
TTACATGGATCTGACATAGG+TGG - chr4.2:49794158-49794177 None:intergenic 40.0%
TTATCTCATCCACTTCGTTC+TGG + chr4.2:49794341-49794360 MS.gene98589:CDS 40.0%
TTGAATTTCTCTCTCGAGCT+CGG + chr4.2:49796399-49796418 MS.gene98589:CDS 40.0%
TTTAGTGAAGTTCCATCCAC+AGG - chr4.2:49794700-49794719 None:intergenic 40.0%
! GCTAAGAGCTTTTCTAGATC+AGG + chr4.2:49794122-49794141 MS.gene98589:CDS 40.0%
! GTCCTTCAAACTCTGCATTT+TGG - chr4.2:49796103-49796122 None:intergenic 40.0%
! TAGCCTCTGAAAGCTTCATT+TGG - chr4.2:49795923-49795942 None:intergenic 40.0%
! TTTTGACCATCCTTTTCGCT+TGG - chr4.2:49796212-49796231 None:intergenic 40.0%
!! AGGAAGATGGACTGCAATAA+TGG + chr4.2:49794902-49794921 MS.gene98589:intron 40.0%
!! GAAAACTTGCTGCTTCTTTG+TGG + chr4.2:49794003-49794022 MS.gene98589:CDS 40.0%
!! TACTTCTAGCTTCCTTCAGA+TGG - chr4.2:49795344-49795363 None:intergenic 40.0%
!! TTTTGGCTGGAAAGAAAGGA+GGG + chr4.2:49793841-49793860 MS.gene98589:CDS 40.0%
!!! ATTTTGGCTGGAAAGAAAGG+AGG + chr4.2:49793840-49793859 MS.gene98589:CDS 40.0%
!!! GCTATTTTGGCTGGAAAGAA+AGG + chr4.2:49793837-49793856 MS.gene98589:CDS 40.0%
!!! TAGTAGCTTTTCAGGTGCAT+TGG + chr4.2:49795011-49795030 MS.gene98589:intron 40.0%
!!! TTCAAGAGAGCTATTTTGGC+TGG + chr4.2:49793828-49793847 MS.gene98589:CDS 40.0%
AAGTCCTTCTTGACCCTTGA+AGG - chr4.2:49794047-49794066 None:intergenic 45.0%
ACGGCAATAGAGGATCAGAA+TGG + chr4.2:49796180-49796199 MS.gene98589:CDS 45.0%
AGAAAATGGGGATGCTTCTC+CGG + chr4.2:49796022-49796041 MS.gene98589:CDS 45.0%
AGCCAAGGAAGATGAAGATG+AGG - chr4.2:49793796-49793815 None:intergenic 45.0%
GAAGAATAGTGGCAAATGCG+CGG + chr4.2:49795305-49795324 MS.gene98589:intron 45.0%
GCTGGTGGAGGAAATGAAAA+AGG + chr4.2:49795818-49795837 MS.gene98589:CDS 45.0%
GGATGGAACTTCACTAAACG+TGG + chr4.2:49794702-49794721 MS.gene98589:intron 45.0%
GGTTACAGAAGAACAGTGTC+AGG + chr4.2:49794317-49794336 MS.gene98589:CDS 45.0%
TACGCTTGTATGAGTGGAAC+TGG + chr4.2:49794639-49794658 MS.gene98589:intron 45.0%
TCTAACGGTCTCAACTCTCA+TGG - chr4.2:49794947-49794966 None:intergenic 45.0%
TGAGCAAATGAGAAGCTGCA+AGG + chr4.2:49794073-49794092 MS.gene98589:CDS 45.0%
TGTAGCTGAAGAGCTTACAG+TGG + chr4.2:49795620-49795639 MS.gene98589:CDS 45.0%
TTGCAGAAGAAAAGGCTGCA+TGG + chr4.2:49795556-49795575 MS.gene98589:CDS 45.0%
TTGTATGAGTGGAACTGGAC+TGG + chr4.2:49794644-49794663 MS.gene98589:intron 45.0%
! AGGACATAATGACTCGGATG+AGG + chr4.2:49796118-49796137 MS.gene98589:CDS 45.0%
! CTGACAAAGAAAGTACAGGG+AGG + chr4.2:49796252-49796271 MS.gene98589:CDS 45.0%
!! GTAGTACTAGTCTTCCACAG+TGG - chr4.2:49793882-49793901 None:intergenic 45.0%
!!! ACATGTTTTGGTGGTTGGCA+AGG + chr4.2:49795248-49795267 MS.gene98589:intron 45.0%
AATAGTGGCAAATGCGCGGT+TGG + chr4.2:49795309-49795328 MS.gene98589:CDS 50.0%
AGCTCGGATACAAGACGATG+AGG + chr4.2:49796415-49796434 MS.gene98589:CDS 50.0%
AGGACGGAACTCCAAGCAAT+AGG + chr4.2:49796435-49796454 MS.gene98589:CDS 50.0%
AGTGAGCTTGATCGGGTTTG+TGG + chr4.2:49795459-49795478 MS.gene98589:CDS 50.0%
CGGATACAAGACGATGAGGA+CGG + chr4.2:49796419-49796438 MS.gene98589:CDS 50.0%
CTCTCGGAAGTGAGCTTGAT+CGG + chr4.2:49795451-49795470 MS.gene98589:CDS 50.0%
GCATCCTTCAAGGGTCAAGA+AGG + chr4.2:49794040-49794059 MS.gene98589:CDS 50.0%
GGACTGGAATCCCTTAAGCA+AGG + chr4.2:49794660-49794679 MS.gene98589:intron 50.0%
TCATCCACTTCGTTCTGGTG+TGG + chr4.2:49794346-49794365 MS.gene98589:CDS 50.0%
TCTCGGAAGTGAGCTTGATC+GGG + chr4.2:49795452-49795471 MS.gene98589:CDS 50.0%
TGGAGTGAAGAGCCATCTGA+AGG + chr4.2:49795329-49795348 MS.gene98589:CDS 50.0%
! CTAGTCTTCCACAGTGGAAC+TGG - chr4.2:49793876-49793895 None:intergenic 50.0%
! GTGATTTCTGAGGAGCCATG+AGG - chr4.2:49795075-49795094 None:intergenic 50.0%
! GTTAGCAGATGTTTTGCGCG+AGG + chr4.2:49795890-49795909 MS.gene98589:CDS 50.0%
AAGCTCACTTCCGAGAGCCA+AGG - chr4.2:49795448-49795467 None:intergenic 55.0%
ACTTCCGAGAGCCAAGGTGA+GGG - chr4.2:49795442-49795461 None:intergenic 55.0%
ATCGACAATGGCCCTCACCT+TGG + chr4.2:49795428-49795447 MS.gene98589:CDS 55.0%
CTTCCACAGTGGAACTGGTG+TGG - chr4.2:49793871-49793890 None:intergenic 55.0%
TATTGGGGAAGACAGAGCGC+TGG + chr4.2:49795800-49795819 MS.gene98589:CDS 55.0%
TCTGAGGAGCCATGAGGTCA+TGG - chr4.2:49795069-49795088 None:intergenic 55.0%
CACTTCCGAGAGCCAAGGTG+AGG - chr4.2:49795443-49795462 None:intergenic 60.0%
CCACAGTGGAACTGGTGTGG+TGG - chr4.2:49793868-49793887 None:intergenic 60.0%
CCACCACACCAGTTCCACTG+TGG + chr4.2:49793865-49793884 MS.gene98589:CDS 60.0%
GCGTCCACACCAGAACGAAG+TGG - chr4.2:49794353-49794372 None:intergenic 60.0%
! ATGGCCCTCACCTTGGCTCT+CGG + chr4.2:49795435-49795454 MS.gene98589:CDS 60.0%
!! GGAAGACAGAGCGCTGGTGG+AGG + chr4.2:49795806-49795825 MS.gene98589:CDS 65.0%
!! TGGGGAAGACAGAGCGCTGG+TGG + chr4.2:49795803-49795822 MS.gene98589:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 49793702 49796631 49793702 ID=MS.gene98589
chr4.2 mRNA 49793702 49796631 49793702 ID=MS.gene98589.t1;Parent=MS.gene98589
chr4.2 exon 49793702 49794193 49793702 ID=MS.gene98589.t1.exon1;Parent=MS.gene98589.t1
chr4.2 CDS 49793702 49794193 49793702 ID=cds.MS.gene98589.t1;Parent=MS.gene98589.t1
chr4.2 exon 49794293 49794397 49794293 ID=MS.gene98589.t1.exon2;Parent=MS.gene98589.t1
chr4.2 CDS 49794293 49794397 49794293 ID=cds.MS.gene98589.t1;Parent=MS.gene98589.t1
chr4.2 exon 49795306 49796631 49795306 ID=MS.gene98589.t1.exon3;Parent=MS.gene98589.t1
chr4.2 CDS 49795306 49796631 49795306 ID=cds.MS.gene98589.t1;Parent=MS.gene98589.t1
Gene Sequence

>MS.gene98589

ATGTCCTCTTGTCATAATCAAACAAACAATAACCTTAAAGAAGGTCTTAGAGAGATTTCACACAACAAAATCAGGAAGAGAAACTGTTCATCCTCATCTTCATCTTCCTTGGCTAGAAGATACAGATTCAAGAGAGCTATTTTGGCTGGAAAGAAAGGAGGGTCCACCACACCAGTTCCACTGTGGAAGACTAGTACTACATCTTCACCTTCTATGGAGAACACTACACAACATCTTTTGTATTCTACAGCTTCAGGGTTACCCTGCAAAGATAAAGAGAAGGAGGTTTCTGTTTCAGCAAGAAAACTTGCTGCTTCTTTGTGGGAAATCAATGATTTGCATCCTTCAAGGGTCAAGAAGGACTTTGAAGTTGAGCAAATGAGAAGCTGCAAGGAAACAAGTAACAGAAGCAGAGAAAAAGCTAAGAGCTTTTCTAGATCAGGTTTGTTGAGGCCACCTATGTCAGATCCATGTAACAGTCCTATTTCAGAGGTAAATTTCTATGAAAAAAAGTTTACTTTTTCATTTTGTATTGTGTTATTTGGTCTTGTATGAAGTTGTCTGATTCTTGTTTTGCTTTTGATTATGCAGAGAATGAAAGGATTTGAAAGTGATGGTTACAGAAGAACAGTGTCAGGGTTATCTCATCCACTTCGTTCTGGTGTGGACGCTCATATCAGTGTTAGTTTAAATGAGGTAGAGTGTTTATAGTAAGTAAATTTGTCATACTAATTAGAAAGAGAAATTATTTTTGTATATCAAAGTTTTGATGTCAAATACACTGTTCTTTAATTTTTATGTGTACTATTGAAATGCATCATAGTTGTCGTAGATAAAAGTAAAAGAGAGATAGAGAAAAACACATACGATGTCATTTAATTTTCAAATAACATATCTAAATTAGAAATGTGGTGAGCATATCATATTGGTCCAATATTACGCTTGTATGAGTGGAACTGGACTGGAATCCCTTAAGCAAGGTTTCAAATTCAAGTCCTGTGGATGGAACTTCACTAAACGTGGCCAACCAAGTTTCCTGATAGAGATTAATCATTGGCAAAGTCGATGAATACTTCACGGCAATAACATGGTTAACAAAAAGAAAATAAAAATTGGCCCATCATTTTCATAATCATCAACCTAGTTATTCAACCTTTTTTTGTGTCAAAATTTGGGGGCTTTAATTTGTAGTAGTTGAAAAGGAAGATGGACTGCAATAATGGCATTTAACACACGTAGTTTCCATGAGAGTTGAGACCGTTAGATATTTATTTGAGAGAACCTATTTTCTTACAATAAAATTAATTTTTAGTAGCTTTTCAGGTGCATTGGTTTGAAATTGAAAGTACTAGTAATAGTAATAACCATGACCTCATGGCTCCTCAGAAATCACTGATCTCATCATTTTTTAAGATTAAACTGTCACTATTATTCACTCTGATCTAGTAGTATGATATTTCTTTTGCATTGTTTCATGTATCATTTCAATTGAAAAAGTAACAGCAGGCAAAATATATAGGTAGATCTGACTAATTAATTTAAAATTACATGTTTTGGTGGTTGGCAAGGATAGAACTGAACTACAATTAAAATTTGAAATGCAGAAGAATAGTGGCAAATGCGCGGTTGGAGTGAAGAGCCATCTGAAGGAAGCTAGAAGTAGTCTATCGACATCGAAGAAGATTCTTAAGGTTTTAAATCAAATGTGTCATAGAGAGAAGAAATCATCGACAATGGCCCTCACCTTGGCTCTCGGAAGTGAGCTTGATCGGGTTTGTGGCCTACTTGACAAACTTATACAAGATGAGCGCTCGAACTCTAACCAGAACGACATTGAGTATATGGTAAAGCGTTTTGCAGAAGAAAAGGCTGCATGGAAAAGCAGAGAAAAAGAAAAAATTCACGATGCCGTTAAAAATGTAGCTGAAGAGCTTACAGTGGAGAAGAAGTTAAGGAAACAAACTGAAAGGTTGAATAAGAAGATTGCCCTAGAAATGGCTAGTGTAAAAGCTTCACAGCTGAAAGTATGTGAAGAGCTTGAAAGGGAGAAACGTGCTAAAGAGATACTCGAGCAAATTTGTGATGAACTAGATAGAGGTATTGGGGAAGACAGAGCGCTGGTGGAGGAAATGAAAAAGGAGTCGGTTAAAGTTCGTGAAGAAGTGGAAAAAGAGAGGGAAATGCTTCAGTTAGCAGATGTTTTGCGCGAGGAGAGAGTCCAAATGAAGCTTTCAGAGGCTAAGTATCAATTTGAGGAGAAAAATGATTTTGTAGAAAAGCTGAAAAATGAGCTTGAAGACTTTATGAGAACTAGAGATGAAGAAAATGGGGATGCTTCTCCGGAGTCTACAAAATTCAACGATCTCGAGTCTTATTTCAACAAAGTTTGTCAGAGATTCCAAAATGCAGAGTTTGAAGGACATAATGACTCGGATGAGGACGACAGTGATCTCCAATCCATTGAACTGAACATGAATAACGGCAATAGAGGATCAGAATGGAGTTATCCAAGCGAAAAGGATGGTCAAAAAGATTCAAAAAGAGTTTCAACTGACAAAGAAAGTACAGGGAGGAAATCTTATGAGAGAATTCAATGGGGAAGTATTTGCTTCAACAAGAGAAATTCCAGTTTCAAGAAGAGGGATTTGGATACCAATATTCAAGAAGGTCAAGATCATTCTCGTCCCGATAGTTCAATTGAATTTCTCTCTCGAGCTCGGATACAAGACGATGAGGACGGAACTCCAAGCAATAGGTCTATTTCAAGTGCTAATCATGTTCAGAGAAATGATAATCAGTTACCTTTGCAGTGTACTAGTGAAAGAGCAAGAGAAAATTCTCTTCTTGTCTTTGAGGGTGAAAATTTGAAGCAAGAAGCTGAAGGAAGAAAATCAAAATGTTACTTAAAGAGTTTAGATAGTGATAGTTAG

Protein sequence

>MS.gene98589.t1

MSSCHNQTNNNLKEGLREISHNKIRKRNCSSSSSSSLARRYRFKRAILAGKKGGSTTPVPLWKTSTTSSPSMENTTQHLLYSTASGLPCKDKEKEVSVSARKLAASLWEINDLHPSRVKKDFEVEQMRSCKETSNRSREKAKSFSRSGLLRPPMSDPCNSPISERMKGFESDGYRRTVSGLSHPLRSGVDAHISVSLNEKNSGKCAVGVKSHLKEARSSLSTSKKILKVLNQMCHREKKSSTMALTLALGSELDRVCGLLDKLIQDERSNSNQNDIEYMVKRFAEEKAAWKSREKEKIHDAVKNVAEELTVEKKLRKQTERLNKKIALEMASVKASQLKVCEELEREKRAKEILEQICDELDRGIGEDRALVEEMKKESVKVREEVEKEREMLQLADVLREERVQMKLSEAKYQFEEKNDFVEKLKNELEDFMRTRDEENGDASPESTKFNDLESYFNKVCQRFQNAEFEGHNDSDEDDSDLQSIELNMNNGNRGSEWSYPSEKDGQKDSKRVSTDKESTGRKSYERIQWGSICFNKRNSSFKKRDLDTNIQEGQDHSRPDSSIEFLSRARIQDDEDGTPSNRSISSANHVQRNDNQLPLQCTSERARENSLLVFEGENLKQEAEGRKSKCYLKSLDSDS