Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98748.t1 | XP_003604651.1 | 57.6 | 425 | 26 | 3 | 1 | 272 | 72 | 495 | 1.30E-110 | 409.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98748.t1 | G7JN22 | 57.6 | 425 | 26 | 3 | 1 | 272 | 72 | 495 | 9.1e-111 | 409.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050680 | MS.gene98748 | 0.815378 | 9.53E-52 | -1.69E-46 |
| MS.gene051198 | MS.gene98748 | 0.802389 | 5.74E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene98748 | 0.822702 | 2.06E-53 | -1.69E-46 |
| MS.gene052333 | MS.gene98748 | 0.80769 | 4.47E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene98748 | 0.819612 | 1.06E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene98748 | -0.829934 | 3.90E-55 | -1.69E-46 |
| MS.gene054467 | MS.gene98748 | 0.802413 | 5.68E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene98748 | 0.802349 | 5.85E-49 | -1.69E-46 |
| MS.gene058515 | MS.gene98748 | 0.801516 | 8.68E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene98748 | 0.815215 | 1.04E-51 | -1.69E-46 |
| MS.gene060553 | MS.gene98748 | 0.811128 | 8.17E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98748.t1 | MTR_4g015550 | 84.393 | 173 | 14 | 2 | 112 | 272 | 324 | 495 | 1.04e-88 | 273 |
| MS.gene98748.t1 | MTR_4g015550 | 94.595 | 111 | 6 | 0 | 1 | 111 | 72 | 182 | 7.72e-70 | 224 |
| MS.gene98748.t1 | MTR_4g015550 | 75.385 | 65 | 14 | 1 | 165 | 227 | 448 | 512 | 3.25e-22 | 95.9 |
| MS.gene98748.t1 | MTR_4g015550 | 94.595 | 111 | 6 | 0 | 1 | 111 | 72 | 182 | 8.55e-71 | 223 |
| MS.gene98748.t1 | MTR_4g015550 | 89.091 | 55 | 5 | 1 | 112 | 166 | 324 | 377 | 1.89e-22 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98748.t1 | AT5G01260 | 53.922 | 102 | 46 | 1 | 10 | 110 | 75 | 176 | 1.28e-32 | 122 |
| MS.gene98748.t1 | AT5G01260 | 53.922 | 102 | 46 | 1 | 10 | 110 | 75 | 176 | 1.29e-32 | 121 |
| MS.gene98748.t1 | AT5G01260 | 53.922 | 102 | 46 | 1 | 10 | 110 | 75 | 176 | 3.08e-32 | 122 |
Find 58 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATCCTAAACTTGGTTTA+TGG | 0.208760 | 4.3:-82966110 | MS.gene98748:CDS |
| GAAAAGAAGGTGATATTATT+TGG | 0.215755 | 4.3:-82965585 | MS.gene98748:CDS |
| TGTTCATAGTTTCCCATGTT+TGG | 0.263305 | 4.3:+82965539 | None:intergenic |
| TTAGATTCTTCTTCCATTGT+TGG | 0.308755 | 4.3:+82963259 | None:intergenic |
| CGCAAGGCATTACCATGAAT+TGG | 0.309591 | 4.3:+82963229 | None:intergenic |
| CGCAAGGCATTACCATGAAT+TGG | 0.309591 | 4.3:+82963903 | None:intergenic |
| CTATACAAGTTGATACTAAA+AGG | 0.314326 | 4.3:-82965607 | MS.gene98748:CDS |
| CTACTAAAAGATTGCGACTT+TGG | 0.316881 | 4.3:-82966156 | MS.gene98748:CDS |
| GGAGAACAGTTTCTAATAGT+TGG | 0.352666 | 4.3:-82966135 | MS.gene98748:CDS |
| GGGTTCCATAAACCAAGTTT+AGG | 0.360824 | 4.3:+82966105 | None:intergenic |
| GCATGAAGAACAGTTTCATT+TGG | 0.387821 | 4.3:-82963958 | MS.gene98748:CDS |
| CATGGTCTGATGGTCATATA+TGG | 0.388044 | 4.3:-82966062 | MS.gene98748:CDS |
| AGGTGATATTATTTGGCAAC+CGG | 0.392152 | 4.3:-82965578 | MS.gene98748:CDS |
| ACATGAAGAGCAGTTTCATT+TGG | 0.393105 | 4.3:-82963284 | MS.gene98748:CDS |
| GTCAATGGTAATGCATCTAA+AGG | 0.413839 | 4.3:+82966084 | None:intergenic |
| TCTAACTCAGAGCCAATTCA+TGG | 0.434464 | 4.3:-82963241 | None:intergenic |
| GGAGGTCCTGTTCTTGTACC+TGG | 0.437575 | 4.3:-82965230 | MS.gene98748:CDS |
| GTTGGAGATGATCCTAAACT+TGG | 0.469158 | 4.3:-82966117 | MS.gene98748:CDS |
| TTCTGATCCTGAGTTTCAAA+AGG | 0.469360 | 4.3:+82965125 | None:intergenic |
| ATTAAGCCAGGTACAAGAAC+AGG | 0.470486 | 4.3:+82965224 | None:intergenic |
| TCTTCTTCAACAACTTCACT+TGG | 0.473052 | 4.3:+82965176 | None:intergenic |
| TCAAACTCAGAGCCAATTCA+TGG | 0.486763 | 4.3:-82963915 | MS.gene98748:CDS |
| ATCATGTGTTCAGGATATGC+TGG | 0.508543 | 4.3:-82965644 | MS.gene98748:intron |
| GTACTTGTACTTATCTCTTG+TGG | 0.509169 | 4.3:+82963331 | None:intergenic |
| TCAATGGTAATGCATCTAAA+GGG | 0.510357 | 4.3:+82966085 | None:intergenic |
| TTACCGTTTCGAAGCCCCAC+TGG | 0.512596 | 4.3:+82963871 | None:intergenic |
| TTGATACTAAAAGGAAAAGA+AGG | 0.516269 | 4.3:-82965598 | MS.gene98748:CDS |
| TTGGCATCAACAATGGAAGA+AGG | 0.534614 | 4.3:-82963939 | MS.gene98748:CDS |
| CATCCAGTGGGGCTTCGAAA+CGG | 0.535005 | 4.3:-82963874 | MS.gene98748:intron |
| TATTATTTGGCAACCGGGGT+CGG | 0.540226 | 4.3:-82965572 | MS.gene98748:CDS |
| TCAGTCAACGGTATTAAGCC+AGG | 0.540479 | 4.3:+82965212 | None:intergenic |
| TGTTCGCTTTGTTGAACTTG+AGG | 0.544102 | 4.3:+82966307 | None:intergenic |
| CGGATCGAGTAATCCAAACA+TGG | 0.544820 | 4.3:-82965552 | MS.gene98748:CDS |
| GTTTCAAAAGGTTCAACTGA+TGG | 0.554167 | 4.3:+82965137 | None:intergenic |
| TGGATTACTCGATCCGACCC+CGG | 0.556713 | 4.3:+82965559 | None:intergenic |
| TGACCATCAGACCATGTCAA+TGG | 0.564403 | 4.3:+82966069 | None:intergenic |
| GTTTCATTTGGCATCAACAA+TGG | 0.568666 | 4.3:-82963946 | MS.gene98748:CDS |
| TCATATATGGACTGTTGAGC+TGG | 0.575955 | 4.3:-82966049 | MS.gene98748:intron |
| GTTTCATTTGGCACCAACAA+TGG | 0.578517 | 4.3:-82963272 | MS.gene98748:CDS |
| CCAGCTTCTTCTTCAGTCAA+CGG | 0.590556 | 4.3:+82965200 | None:intergenic |
| TGTGTTCAGGATATGCTGGC+TGG | 0.594337 | 4.3:-82965640 | MS.gene98748:intron |
| CCACTGGATGTCATTTCGCA+AGG | 0.596297 | 4.3:+82963887 | None:intergenic |
| TGGCATCAACAATGGAAGAA+GGG | 0.602203 | 4.3:-82963938 | MS.gene98748:CDS |
| TGAAAATGTTCAGTTGAGCA+AGG | 0.604858 | 4.3:-82963377 | MS.gene98748:intron |
| TAGATGCATTACCATTGACA+TGG | 0.613812 | 4.3:-82966080 | MS.gene98748:CDS |
| CCTTGCGAAATGACATCCAG+TGG | 0.615325 | 4.3:-82963887 | MS.gene98748:CDS |
| GGTGATATTATTTGGCAACC+GGG | 0.626598 | 4.3:-82965577 | MS.gene98748:CDS |
| TGAAAATGCTCAGTTAAGCA+AGG | 0.630052 | 4.3:-82964045 | MS.gene98748:intron |
| TTACCATTGACATGGTCTGA+TGG | 0.637869 | 4.3:-82966072 | MS.gene98748:CDS |
| CTTGCGAAATGACATCCAGT+GGG | 0.638788 | 4.3:-82963886 | MS.gene98748:CDS |
| CCGTTGACTGAAGAAGAAGC+TGG | 0.654789 | 4.3:-82965200 | MS.gene98748:CDS |
| GTGATATTATTTGGCAACCG+GGG | 0.662994 | 4.3:-82965576 | MS.gene98748:CDS |
| TTCAACTGATGGCTCTACCA+CGG | 0.664103 | 4.3:+82965148 | None:intergenic |
| GGATCGAGTAATCCAAACAT+GGG | 0.665164 | 4.3:-82965551 | MS.gene98748:CDS |
| TCAGGATCAGAATATACCAG+AGG | 0.719056 | 4.3:-82965114 | MS.gene98748:intron |
| TGTTGAAGAAGAAAAGACCG+TGG | 0.738151 | 4.3:-82965165 | MS.gene98748:CDS |
| TTGCGAAATGACATCCAGTG+GGG | 0.750769 | 4.3:-82963885 | MS.gene98748:CDS |
| TTAGTAGCTGAAACTCAACA+CGG | 0.751100 | 4.3:+82966172 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACACACAAATTAAAATTTA+GGG | + | chr4.3:82963356-82963375 | None:intergenic | 15.0% |
| !! | ATAAAATGAGAAAATTTGTA+TGG | + | chr4.3:82965269-82965288 | None:intergenic | 15.0% |
| !! | ATTAATGATAACAATCAATT+TGG | + | chr4.3:82964735-82964754 | None:intergenic | 15.0% |
| !! | TCTTAATTTCAAAGATTTAA+CGG | + | chr4.3:82963790-82963809 | None:intergenic | 15.0% |
| !! | TTGGAAACAAAATAAAAAAA+AGG | + | chr4.3:82963646-82963665 | None:intergenic | 15.0% |
| !!! | TCATTGCTTTAAATAATTAA+TGG | + | chr4.3:82966084-82966103 | None:intergenic | 15.0% |
| !!! | TTGCACATTTTTTTAATATA+TGG | - | chr4.3:82965436-82965455 | MS.gene98748:intron | 15.0% |
| !! | AAGAGTTCTTGTAAATAAAA+CGG | + | chr4.3:82965953-82965972 | None:intergenic | 20.0% |
| !! | CAAATCATTAAGATATTGTT+TGG | - | chr4.3:82963559-82963578 | MS.gene98748:intron | 20.0% |
| !! | CAACACACAAATTAAAATTT+AGG | + | chr4.3:82963357-82963376 | None:intergenic | 20.0% |
| !!! | AAATAAATTGTGTGTTGTTA+TGG | + | chr4.3:82964871-82964890 | None:intergenic | 20.0% |
| !!! | ATATAATTTTAGTGCTTGTT+TGG | + | chr4.3:82965231-82965250 | None:intergenic | 20.0% |
| ! | AAAAAAAGATGTCCAAAATC+TGG | + | chr4.3:82965839-82965858 | None:intergenic | 25.0% |
| ! | AAAAAAGATGTCCAAAATCT+GGG | + | chr4.3:82965838-82965857 | None:intergenic | 25.0% |
| ! | AACAAACAAGTATGTTCTAA+TGG | - | chr4.3:82963282-82963301 | MS.gene98748:CDS | 25.0% |
| ! | AATAATTGTTCTTGAGGATT+GGG | - | chr4.3:82964055-82964074 | MS.gene98748:intron | 25.0% |
| ! | AGAACTTCAGAAAATAATAG+AGG | - | chr4.3:82964085-82964104 | MS.gene98748:intron | 25.0% |
| ! | AGAGTTCTTGTAAATAAAAC+GGG | + | chr4.3:82965952-82965971 | None:intergenic | 25.0% |
| ! | ATCAGATATATTCTAGTCAA+TGG | + | chr4.3:82965978-82965997 | None:intergenic | 25.0% |
| ! | ATGATGATACAAACAAAACA+AGG | + | chr4.3:82964597-82964616 | None:intergenic | 25.0% |
| ! | GAAAAGAAGGTGATATTATT+TGG | - | chr4.3:82963985-82964004 | MS.gene98748:CDS | 25.0% |
| ! | GATTATATATGTACGAAACA+AGG | + | chr4.3:82964673-82964692 | None:intergenic | 25.0% |
| ! | GCAGCGTTAAAAATAAAAAA+GGG | - | chr4.3:82964284-82964303 | MS.gene98748:intron | 25.0% |
| ! | TATAAACAACCACTACATAA+CGG | + | chr4.3:82963900-82963919 | None:intergenic | 25.0% |
| ! | TATATAATCAATGCATCTTG+AGG | - | chr4.3:82964684-82964703 | MS.gene98748:intron | 25.0% |
| ! | TGCAGCGTTAAAAATAAAAA+AGG | - | chr4.3:82964283-82964302 | MS.gene98748:intron | 25.0% |
| ! | TTGATACTAAAAGGAAAAGA+AGG | - | chr4.3:82963972-82963991 | MS.gene98748:CDS | 25.0% |
| !! | ATATTTTTCATCATGTGTTC+AGG | - | chr4.3:82963917-82963936 | MS.gene98748:CDS | 25.0% |
| !! | CTTTTAGTATCAACTTGTAT+AGG | + | chr4.3:82963965-82963984 | None:intergenic | 25.0% |
| !!! | ACATTGGTTTAAATGATTAC+TGG | + | chr4.3:82965410-82965429 | None:intergenic | 25.0% |
| !!! | CTATACAAGTTGATACTAAA+AGG | - | chr4.3:82963963-82963982 | MS.gene98748:CDS | 25.0% |
| !!! | GGTTTTAATAAAAAGGTTTG+CGG | + | chr4.3:82965046-82965065 | None:intergenic | 25.0% |
| !!! | GTTTGTTAAGTTTTTGTAAC+AGG | + | chr4.3:82965076-82965095 | None:intergenic | 25.0% |
| !!! | TATTTTAATCTGAAACAAGC+TGG | - | chr4.3:82964886-82964905 | MS.gene98748:intron | 25.0% |
| !!! | TTTTTTATTTTTAACGCTGC+AGG | + | chr4.3:82964284-82964303 | None:intergenic | 25.0% |
| AAATAAAAAAGGGACGATTG+TGG | - | chr4.3:82964294-82964313 | MS.gene98748:intron | 30.0% | |
| AAATGTGCAAGTTTACACAT+TGG | + | chr4.3:82965426-82965445 | None:intergenic | 30.0% | |
| ACGGAATCAAACATTTGAAA+AGG | + | chr4.3:82964506-82964525 | None:intergenic | 30.0% | |
| ACTTCAGAAAATAATAGAGG+AGG | - | chr4.3:82964088-82964107 | MS.gene98748:intron | 30.0% | |
| ATCAAACATTTGAAAAGGAG+CGG | + | chr4.3:82964501-82964520 | None:intergenic | 30.0% | |
| ATGATCCTAAACTTGGTTTA+TGG | - | chr4.3:82963460-82963479 | MS.gene98748:intron | 30.0% | |
| CACTTAGAGAAGAACTAATT+AGG | - | chr4.3:82964556-82964575 | MS.gene98748:intron | 30.0% | |
| CTTCTGATGAAAAAACAACA+GGG | - | chr4.3:82965346-82965365 | MS.gene98748:intron | 30.0% | |
| GAACAGAATAATTGTTCTTG+AGG | - | chr4.3:82964049-82964068 | MS.gene98748:intron | 30.0% | |
| GAATAATTGTTCTTGAGGAT+TGG | - | chr4.3:82964054-82964073 | MS.gene98748:intron | 30.0% | |
| GAGTTCTTGTAAATAAAACG+GGG | + | chr4.3:82965951-82965970 | None:intergenic | 30.0% | |
| TTAGATTCTTCTTCCATTGT+TGG | + | chr4.3:82966314-82966333 | None:intergenic | 30.0% | |
| ! | CGTTTCTTTAAAAGCTCATT+CGG | - | chr4.3:82964523-82964542 | MS.gene98748:intron | 30.0% |
| ! | CTAATTAGTTCTTCTCTAAG+TGG | + | chr4.3:82964558-82964577 | None:intergenic | 30.0% |
| ! | GTTTCTTTAAAAGCTCATTC+GGG | - | chr4.3:82964524-82964543 | MS.gene98748:intron | 30.0% |
| ! | GTTTGGTCGAAAACATTTTA+AGG | - | chr4.3:82963576-82963595 | MS.gene98748:intron | 30.0% |
| ! | TCAATGGTAATGCATCTAAA+GGG | + | chr4.3:82963488-82963507 | None:intergenic | 30.0% |
| !! | ATTTTAGTGCTTGTTTGGAT+TGG | + | chr4.3:82965226-82965245 | None:intergenic | 30.0% |
| !! | CGAATGAGCTTTTAAAGAAA+CGG | + | chr4.3:82964525-82964544 | None:intergenic | 30.0% |
| !! | TCTGCAGGGTTTTAATAAAA+AGG | + | chr4.3:82965053-82965072 | None:intergenic | 30.0% |
| !!! | GATTGTTTTGATGTCAAATG+TGG | - | chr4.3:82965743-82965762 | MS.gene98748:intron | 30.0% |
| AAAGGTGAAAACAACGTAAC+TGG | + | chr4.3:82963628-82963647 | None:intergenic | 35.0% | |
| AAGAGTGAAGAATCTGAAGA+TGG | - | chr4.3:82964246-82964265 | MS.gene98748:intron | 35.0% | |
| ACATGAAGAGCAGTTTCATT+TGG | - | chr4.3:82966286-82966305 | MS.gene98748:intron | 35.0% | |
| AGACACTTAGTAATGCTAGA+TGG | + | chr4.3:82965102-82965121 | None:intergenic | 35.0% | |
| AGCATTACTAAGTGTCTGTT+TGG | - | chr4.3:82965105-82965124 | MS.gene98748:intron | 35.0% | |
| AGGTGATATTATTTGGCAAC+CGG | - | chr4.3:82963992-82964011 | MS.gene98748:CDS | 35.0% | |
| ATTCAACAGCCAAAAGTTCA+TGG | + | chr4.3:82964840-82964859 | None:intergenic | 35.0% | |
| CTACTAAAAGATTGCGACTT+TGG | - | chr4.3:82963414-82963433 | MS.gene98748:intron | 35.0% | |
| GCATGAAGAACAGTTTCATT+TGG | - | chr4.3:82965612-82965631 | MS.gene98748:CDS | 35.0% | |
| GCTATGTTTGCCGAAAATAT+AGG | - | chr4.3:82964162-82964181 | MS.gene98748:intron | 35.0% | |
| GCTTCTGATGAAAAAACAAC+AGG | - | chr4.3:82965345-82965364 | MS.gene98748:intron | 35.0% | |
| GGAGAACAGTTTCTAATAGT+TGG | - | chr4.3:82963435-82963454 | MS.gene98748:intron | 35.0% | |
| GTACTTGTACTTATCTCTTG+TGG | + | chr4.3:82966242-82966261 | None:intergenic | 35.0% | |
| GTTTCAAAAGGTTCAACTGA+TGG | + | chr4.3:82964436-82964455 | None:intergenic | 35.0% | |
| GTTTCATTTGGCATCAACAA+TGG | - | chr4.3:82965624-82965643 | MS.gene98748:CDS | 35.0% | |
| TAGATGCATTACCATTGACA+TGG | - | chr4.3:82963490-82963509 | MS.gene98748:intron | 35.0% | |
| TCTTCTTCAACAACTTCACT+TGG | + | chr4.3:82964397-82964416 | None:intergenic | 35.0% | |
| TGAAAATGCTCAGTTAAGCA+AGG | - | chr4.3:82965525-82965544 | MS.gene98748:intron | 35.0% | |
| TGAAAATGTTCAGTTGAGCA+AGG | - | chr4.3:82966193-82966212 | MS.gene98748:intron | 35.0% | |
| TGTTCATAGTTTCCCATGTT+TGG | + | chr4.3:82964034-82964053 | None:intergenic | 35.0% | |
| TTAGTAGCTGAAACTCAACA+CGG | + | chr4.3:82963401-82963420 | None:intergenic | 35.0% | |
| TTCTGATCCTGAGTTTCAAA+AGG | + | chr4.3:82964448-82964467 | None:intergenic | 35.0% | |
| TTTAGGGATTTGAGTCCTAA+AGG | + | chr4.3:82963340-82963359 | None:intergenic | 35.0% | |
| ! | GAGATGTTACCATGAACTTT+TGG | - | chr4.3:82964828-82964847 | MS.gene98748:intron | 35.0% |
| ! | GTCAATGGTAATGCATCTAA+AGG | + | chr4.3:82963489-82963508 | None:intergenic | 35.0% |
| ! | TTCACTTGTAGGCTTTAGTT+AGG | - | chr4.3:82965370-82965389 | MS.gene98748:intron | 35.0% |
| !! | AAAGTCGATGCTAGTCTTAA+TGG | - | chr4.3:82966138-82966157 | MS.gene98748:CDS | 35.0% |
| !! | AGCTTAATCGATTTTGAAGG+AGG | - | chr4.3:82964322-82964341 | MS.gene98748:intron | 35.0% |
| !! | GGAAGCTTAATCGATTTTGA+AGG | - | chr4.3:82964319-82964338 | MS.gene98748:intron | 35.0% |
| !!! | AGTTGAACCTTTTGAAACTC+AGG | - | chr4.3:82964438-82964457 | MS.gene98748:intron | 35.0% |
| !!! | CTCTTTTGGTCTTAAAACTC+TGG | + | chr4.3:82963756-82963775 | None:intergenic | 35.0% |
| AAAAAAGGGACGATTGTGGA+GGG | - | chr4.3:82964298-82964317 | MS.gene98748:intron | 40.0% | |
| ACTTCCTGTGATATACCGTT+AGG | - | chr4.3:82966014-82966033 | MS.gene98748:intron | 40.0% | |
| AGTCACGATCCTTGATATTG+CGG | - | chr4.3:82964931-82964950 | MS.gene98748:intron | 40.0% | |
| ATCATGTGTTCAGGATATGC+TGG | - | chr4.3:82963926-82963945 | MS.gene98748:CDS | 40.0% | |
| ATCTTGAGGCCAAAAGAAAG+GGG | - | chr4.3:82964698-82964717 | MS.gene98748:intron | 40.0% | |
| ATTAAGCCAGGTACAAGAAC+AGG | + | chr4.3:82964349-82964368 | None:intergenic | 40.0% | |
| CATCTTGAGGCCAAAAGAAA+GGG | - | chr4.3:82964697-82964716 | MS.gene98748:intron | 40.0% | |
| CATGGTCTGATGGTCATATA+TGG | - | chr4.3:82963508-82963527 | MS.gene98748:intron | 40.0% | |
| CGGTGAATTTGACACAATCA+TGG | + | chr4.3:82965203-82965222 | None:intergenic | 40.0% | |
| CTCAACAAATGAAGAACCTC+CGG | - | chr4.3:82964119-82964138 | MS.gene98748:intron | 40.0% | |
| CTTCCTGTGATATACCGTTA+GGG | - | chr4.3:82966015-82966034 | MS.gene98748:intron | 40.0% | |
| GAGTCTTTGCAACAAGTCTA+GGG | + | chr4.3:82965866-82965885 | None:intergenic | 40.0% | |
| GATGTATGCAACCTCAATTG+TGG | - | chr4.3:82965768-82965787 | MS.gene98748:intron | 40.0% | |
| GGATCGAGTAATCCAAACAT+GGG | - | chr4.3:82964019-82964038 | MS.gene98748:CDS | 40.0% | |
| GGGTTCCATAAACCAAGTTT+AGG | + | chr4.3:82963468-82963487 | None:intergenic | 40.0% | |
| GGTGATATTATTTGGCAACC+GGG | - | chr4.3:82963993-82964012 | MS.gene98748:CDS | 40.0% | |
| GTGATATTATTTGGCAACCG+GGG | - | chr4.3:82963994-82964013 | MS.gene98748:CDS | 40.0% | |
| GTTGGAGATGATCCTAAACT+TGG | - | chr4.3:82963453-82963472 | MS.gene98748:intron | 40.0% | |
| GTTTCATTTGGCACCAACAA+TGG | - | chr4.3:82966298-82966317 | MS.gene98748:intron | 40.0% | |
| TAAAAAAGGGACGATTGTGG+AGG | - | chr4.3:82964297-82964316 | MS.gene98748:intron | 40.0% | |
| TCAAACTCAGAGCCAATTCA+TGG | - | chr4.3:82965655-82965674 | MS.gene98748:intron | 40.0% | |
| TCAGGATCAGAATATACCAG+AGG | - | chr4.3:82964456-82964475 | MS.gene98748:intron | 40.0% | |
| TCCAAAATGTTCTCGAAACC+TGG | - | chr4.3:82963661-82963680 | MS.gene98748:intron | 40.0% | |
| TCTAACTCAGAGCCAATTCA+TGG | - | chr4.3:82966329-82966348 | MS.gene98748:CDS | 40.0% | |
| TCTTCTGCATGTCTTCCTTT+AGG | - | chr4.3:82963322-82963341 | MS.gene98748:CDS | 40.0% | |
| TGAGTCTTTGCAACAAGTCT+AGG | + | chr4.3:82965867-82965886 | None:intergenic | 40.0% | |
| TGCCGAAAATATAGGTTCCT+CGG | - | chr4.3:82964170-82964189 | MS.gene98748:intron | 40.0% | |
| TGGCATCAACAATGGAAGAA+GGG | - | chr4.3:82965632-82965651 | MS.gene98748:CDS | 40.0% | |
| TGTTGAAGAAGAAAAGACCG+TGG | - | chr4.3:82964405-82964424 | MS.gene98748:intron | 40.0% | |
| TTACCATTGACATGGTCTGA+TGG | - | chr4.3:82963498-82963517 | MS.gene98748:intron | 40.0% | |
| TTGGCATCAACAATGGAAGA+AGG | - | chr4.3:82965631-82965650 | MS.gene98748:CDS | 40.0% | |
| ! | AAACTCTGGTTTCCATCGAA+AGG | + | chr4.3:82963742-82963761 | None:intergenic | 40.0% |
| ! | AACTCTGGTTTCCATCGAAA+GGG | + | chr4.3:82963741-82963760 | None:intergenic | 40.0% |
| ! | AGTTTTTGTAACAGGTCTGC+AGG | + | chr4.3:82965068-82965087 | None:intergenic | 40.0% |
| ! | CGGTGAAAACAACACTCTTT+TGG | + | chr4.3:82963770-82963789 | None:intergenic | 40.0% |
| ! | CTCCGAGGAACCTATATTTT+CGG | + | chr4.3:82964175-82964194 | None:intergenic | 40.0% |
| ! | GCAATGTTTCCCCTTTCTTT+TGG | + | chr4.3:82964710-82964729 | None:intergenic | 40.0% |
| ! | GTTTTTGTAACAGGTCTGCA+GGG | + | chr4.3:82965067-82965086 | None:intergenic | 40.0% |
| ! | TCATATATGGACTGTTGAGC+TGG | - | chr4.3:82963521-82963540 | MS.gene98748:intron | 40.0% |
| ! | TGCGATTTTCCGCAATATCA+AGG | + | chr4.3:82964943-82964962 | None:intergenic | 40.0% |
| ! | TGTTCGCTTTGTTGAACTTG+AGG | + | chr4.3:82963266-82963285 | None:intergenic | 40.0% |
| ! | TTAGTGCTTGTTTGGATTGG+CGG | + | chr4.3:82965223-82965242 | None:intergenic | 40.0% |
| ! | TTTTCGGCAAACATAGCCAT+TGG | + | chr4.3:82964159-82964178 | None:intergenic | 40.0% |
| AAATGTTCTCGAAACCTGGC+TGG | - | chr4.3:82963665-82963684 | MS.gene98748:intron | 45.0% | |
| AACAACAGGGCTTCACTTGT+AGG | - | chr4.3:82965359-82965378 | MS.gene98748:intron | 45.0% | |
| AAGCCCTAACGGTATATCAC+AGG | + | chr4.3:82966021-82966040 | None:intergenic | 45.0% | |
| AATCTGGGCAGCAACATCAA+TGG | + | chr4.3:82965823-82965842 | None:intergenic | 45.0% | |
| AGTCTTTGCAACCACAACTG+AGG | + | chr4.3:82964990-82965009 | None:intergenic | 45.0% | |
| CCAGCTTCTTCTTCAGTCAA+CGG | + | chr4.3:82964373-82964392 | None:intergenic | 45.0% | |
| CGAAAATATAGGTTCCTCGG+AGG | - | chr4.3:82964173-82964192 | MS.gene98748:intron | 45.0% | |
| CGGATCGAGTAATCCAAACA+TGG | - | chr4.3:82964018-82964037 | MS.gene98748:CDS | 45.0% | |
| CTAACTCAACCCTACAAAGC+TGG | + | chr4.3:82966046-82966065 | None:intergenic | 45.0% | |
| CTTGCGAAATGACATCCAGT+GGG | - | chr4.3:82965684-82965703 | MS.gene98748:intron | 45.0% | |
| GAAAGCAGACCGTTATGTAG+TGG | - | chr4.3:82963888-82963907 | MS.gene98748:CDS | 45.0% | |
| GCATCTTGAGGCCAAAAGAA+AGG | - | chr4.3:82964696-82964715 | MS.gene98748:intron | 45.0% | |
| TATTATTTGGCAACCGGGGT+CGG | - | chr4.3:82963998-82964017 | MS.gene98748:CDS | 45.0% | |
| TCAGTCAACGGTATTAAGCC+AGG | + | chr4.3:82964361-82964380 | None:intergenic | 45.0% | |
| TCTGGTAATCAGAGTTCGGT+CGG | + | chr4.3:82963717-82963736 | None:intergenic | 45.0% | |
| TGACCATCAGACCATGTCAA+TGG | + | chr4.3:82963504-82963523 | None:intergenic | 45.0% | |
| TGATGTTGCAACCCAGATCA+CGG | - | chr4.3:82965020-82965039 | MS.gene98748:intron | 45.0% | |
| TTGCGAAATGACATCCAGTG+GGG | - | chr4.3:82965685-82965704 | MS.gene98748:intron | 45.0% | |
| ! | AACAAGGTGATGATGAGCGT+TGG | + | chr4.3:82964657-82964676 | None:intergenic | 45.0% |
| ! | ATGGCGACTCATGGTGATTT+TGG | + | chr4.3:82965184-82965203 | None:intergenic | 45.0% |
| ! | ATTGGCTTCTCTGGTAGAAC+CGG | + | chr4.3:82964141-82964160 | None:intergenic | 45.0% |
| ! | CAGCTTTGTAGGGTTGAGTT+AGG | - | chr4.3:82966044-82966063 | MS.gene98748:intron | 45.0% |
| ! | CGCAAGGCATTACCATGAAT+TGG | + | chr4.3:82965670-82965689 | None:intergenic | 45.0% |
| ! | CTCAATTGTGGTTTGCGTTG+CGG | - | chr4.3:82965780-82965799 | MS.gene98748:intron | 45.0% |
| ! | GCCAGGTTTCGAGAACATTT+TGG | + | chr4.3:82963665-82963684 | None:intergenic | 45.0% |
| ! | GCTGGCAATGTTCTAAGTCA+TGG | - | chr4.3:82964904-82964923 | MS.gene98748:intron | 45.0% |
| ! | TGATGTTGCTGCCCAGATTT+TGG | - | chr4.3:82965824-82965843 | MS.gene98748:intron | 45.0% |
| ! | TGTCTGTTTGGAACCAATCG+CGG | - | chr4.3:82965117-82965136 | MS.gene98748:CDS | 45.0% |
| ! | TTCAACTGATGGCTCTACCA+CGG | + | chr4.3:82964425-82964444 | None:intergenic | 45.0% |
| !! | AACATAGCCATTGGCTTCTC+TGG | + | chr4.3:82964150-82964169 | None:intergenic | 45.0% |
| ACTCATCAAGCGGTTACCTC+TGG | + | chr4.3:82964475-82964494 | None:intergenic | 50.0% | |
| ACTTTCTGTGAGATCCTCCG+AGG | + | chr4.3:82964190-82964209 | None:intergenic | 50.0% | |
| CAAAGCTGGTGAAGCCCTAA+CGG | + | chr4.3:82966032-82966051 | None:intergenic | 50.0% | |
| CCTTGCGAAATGACATCCAG+TGG | - | chr4.3:82965683-82965702 | MS.gene98748:intron | 50.0% | |
| CGCAACGCAAACCACAATTG+AGG | + | chr4.3:82965782-82965801 | None:intergenic | 50.0% | |
| CGGAAAATCGCAGTCAAGTG+TGG | - | chr4.3:82964951-82964970 | MS.gene98748:intron | 50.0% | |
| CTGGTAATCAGAGTTCGGTC+GGG | + | chr4.3:82963716-82963735 | None:intergenic | 50.0% | |
| GACACAATCATGGCGACTCA+TGG | + | chr4.3:82965193-82965212 | None:intergenic | 50.0% | |
| GATGCATGCAACCTCAGTTG+TGG | - | chr4.3:82964976-82964995 | MS.gene98748:intron | 50.0% | |
| GATTACCAGAGCCCTTTCGA+TGG | - | chr4.3:82963727-82963746 | MS.gene98748:intron | 50.0% | |
| GGTTCTACCAGAGAAGCCAA+TGG | - | chr4.3:82964140-82964159 | MS.gene98748:intron | 50.0% | |
| TGTGTTCAGGATATGCTGGC+TGG | - | chr4.3:82963930-82963949 | MS.gene98748:CDS | 50.0% | |
| ! | AGGGCTTCACCAGCTTTGTA+GGG | - | chr4.3:82966034-82966053 | MS.gene98748:intron | 50.0% |
| ! | CCACTGGATGTCATTTCGCA+AGG | + | chr4.3:82965686-82965705 | None:intergenic | 50.0% |
| ! | CCGTTGACTGAAGAAGAAGC+TGG | - | chr4.3:82964370-82964389 | MS.gene98748:intron | 50.0% |
| ! | GGGCTCTGGTAATCAGAGTT+CGG | + | chr4.3:82963721-82963740 | None:intergenic | 50.0% |
| ! | TAGGGCTTCACCAGCTTTGT+AGG | - | chr4.3:82966033-82966052 | MS.gene98748:intron | 50.0% |
| AAAGGTTTGCGGCCGTGATC+TGG | + | chr4.3:82965035-82965054 | None:intergenic | 55.0% | |
| AAGGTTTGCGGCCGTGATCT+GGG | + | chr4.3:82965034-82965053 | None:intergenic | 55.0% | |
| CATCCAGTGGGGCTTCGAAA+CGG | - | chr4.3:82965696-82965715 | MS.gene98748:intron | 55.0% | |
| GGAGGTCCTGTTCTTGTACC+TGG | - | chr4.3:82964340-82964359 | MS.gene98748:intron | 55.0% | |
| GGTTTCCATCGAAAGGGCTC+TGG | + | chr4.3:82963735-82963754 | None:intergenic | 55.0% | |
| GTAATCAGAGTTCGGTCGGG+AGG | + | chr4.3:82963713-82963732 | None:intergenic | 55.0% | |
| TGGATTACTCGATCCGACCC+CGG | + | chr4.3:82964014-82964033 | None:intergenic | 55.0% | |
| TTACCGTTTCGAAGCCCCAC+TGG | + | chr4.3:82965702-82965721 | None:intergenic | 55.0% | |
| ! | CTGTTTGGAACCAATCGCGG+TGG | - | chr4.3:82965120-82965139 | MS.gene98748:CDS | 55.0% |
| AACCTGGCTGGAGCAGTCCT+TGG | - | chr4.3:82963677-82963696 | MS.gene98748:intron | 60.0% | |
| AATCACAGCGCCACCGCGAT+TGG | + | chr4.3:82965133-82965152 | None:intergenic | 60.0% | |
| GGAGCGGCACACTCATCAAG+CGG | + | chr4.3:82964485-82964504 | None:intergenic | 60.0% | |
| GGCTTCTCTGGTAGAACCGG+AGG | + | chr4.3:82964138-82964157 | None:intergenic | 60.0% | |
| TTCGGTCGGGAGGTGAAGTC+TGG | + | chr4.3:82963703-82963722 | None:intergenic | 60.0% | |
| CGGGAGGTGAAGTCTGGCCA+AGG | + | chr4.3:82963697-82963716 | None:intergenic | 65.0% | |
| GGCCAAGGACTGCTCCAGCC+AGG | + | chr4.3:82963682-82963701 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 82963242 | 82966350 | 82963242 | ID=MS.gene98748 |
| chr4.3 | mRNA | 82963242 | 82966350 | 82963242 | ID=MS.gene98748.t1;Parent=MS.gene98748 |
| chr4.3 | exon | 82966302 | 82966350 | 82966302 | ID=MS.gene98748.t1.exon1;Parent=MS.gene98748.t1 |
| chr4.3 | CDS | 82966302 | 82966350 | 82966302 | ID=cds.MS.gene98748.t1;Parent=MS.gene98748.t1 |
| chr4.3 | exon | 82966050 | 82966210 | 82966050 | ID=MS.gene98748.t1.exon2;Parent=MS.gene98748.t1 |
| chr4.3 | CDS | 82966050 | 82966210 | 82966050 | ID=cds.MS.gene98748.t1;Parent=MS.gene98748.t1 |
| chr4.3 | exon | 82965531 | 82965653 | 82965531 | ID=MS.gene98748.t1.exon3;Parent=MS.gene98748.t1 |
| chr4.3 | CDS | 82965531 | 82965653 | 82965531 | ID=cds.MS.gene98748.t1;Parent=MS.gene98748.t1 |
| chr4.3 | exon | 82965115 | 82965273 | 82965115 | ID=MS.gene98748.t1.exon4;Parent=MS.gene98748.t1 |
| chr4.3 | CDS | 82965115 | 82965273 | 82965115 | ID=cds.MS.gene98748.t1;Parent=MS.gene98748.t1 |
| chr4.3 | exon | 82963875 | 82964054 | 82963875 | ID=MS.gene98748.t1.exon5;Parent=MS.gene98748.t1 |
| chr4.3 | CDS | 82963875 | 82964054 | 82963875 | ID=cds.MS.gene98748.t1;Parent=MS.gene98748.t1 |
| chr4.3 | exon | 82963242 | 82963386 | 82963242 | ID=MS.gene98748.t1.exon6;Parent=MS.gene98748.t1 |
| chr4.3 | CDS | 82963242 | 82963386 | 82963242 | ID=cds.MS.gene98748.t1;Parent=MS.gene98748.t1 |
| Gene Sequence |
| Protein sequence |
