Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99152.t1 | KEH17877.1 | 94.3 | 1013 | 51 | 4 | 1 | 1007 | 1 | 1012 | 0.00E+00 | 1899.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99152.t1 | Q9Z0H0 | 24.4 | 540 | 309 | 16 | 507 | 979 | 52 | 559 | 5.3e-22 | 108.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99152.t1 | A0A072TKD6 | 94.3 | 1013 | 51 | 4 | 1 | 1007 | 1 | 1012 | 0.0e+00 | 1899.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049989 | MS.gene99152 | 0.832664 | 8.31E-56 | -1.69E-46 |
MS.gene050297 | MS.gene99152 | 0.840397 | 8.91E-58 | -1.69E-46 |
MS.gene05124 | MS.gene99152 | 0.810534 | 1.10E-50 | -1.69E-46 |
MS.gene053416 | MS.gene99152 | 0.808864 | 2.51E-50 | -1.69E-46 |
MS.gene053417 | MS.gene99152 | 0.806004 | 1.02E-49 | -1.69E-46 |
MS.gene055411 | MS.gene99152 | 0.921493 | 3.34E-88 | -1.69E-46 |
MS.gene056526 | MS.gene99152 | 0.824259 | 8.89E-54 | -1.69E-46 |
MS.gene059300 | MS.gene99152 | 0.823165 | 1.60E-53 | -1.69E-46 |
MS.gene060473 | MS.gene99152 | 0.803992 | 2.68E-49 | -1.69E-46 |
MS.gene060565 | MS.gene99152 | 0.821273 | 4.41E-53 | -1.69E-46 |
MS.gene06057 | MS.gene99152 | 0.803174 | 3.95E-49 | -1.69E-46 |
MS.gene061260 | MS.gene99152 | 0.812958 | 3.26E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99152.t1 | MTR_8g007150 | 94.193 | 1016 | 46 | 4 | 1 | 1007 | 1 | 1012 | 0.0 | 1920 |
MS.gene99152.t1 | MTR_8g007150 | 81.569 | 1096 | 104 | 10 | 1 | 1007 | 1 | 1087 | 0.0 | 1728 |
MS.gene99152.t1 | MTR_4g087620 | 29.091 | 165 | 95 | 5 | 825 | 985 | 200 | 346 | 9.09e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99152.t1 | AT4G16970 | 54.851 | 505 | 203 | 7 | 494 | 994 | 388 | 871 | 1.85e-180 | 548 |
Find 241 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGTTCAGATCTCAGTTTC+AGG | 0.190414 | 8.2:-82642088 | MS.gene99152:CDS |
CGGAATATGCTTGAGCGTTT+TGG | 0.199917 | 8.2:-82644949 | MS.gene99152:CDS |
AATACCTTAACGAAAATTTC+TGG | 0.203122 | 8.2:+82647995 | None:intergenic |
CTCTTCACTGCCCCGCAATT+TGG | 0.205385 | 8.2:+82641889 | None:intergenic |
AGGCTCTAACATCCAATAAA+AGG | 0.206842 | 8.2:-82643607 | MS.gene99152:CDS |
AGTGAAACGGAGTTGAATTT+TGG | 0.214768 | 8.2:+82648194 | None:intergenic |
ATGGATTGCTTTGACTCATT+TGG | 0.234727 | 8.2:-82646736 | MS.gene99152:CDS |
CATTCATCTACGGTTGCTTT+GGG | 0.247411 | 8.2:-82643215 | MS.gene99152:CDS |
ATTAAATCAAACAATGATTT+CGG | 0.248376 | 8.2:+82640988 | None:intergenic |
TTAAATCAAACAATGATTTC+GGG | 0.250887 | 8.2:+82640989 | None:intergenic |
AACATTATCAAATTTGTTAC+AGG | 0.266909 | 8.2:+82646138 | None:intergenic |
TTTGAGTCTCGGATTGTAAA+TGG | 0.273704 | 8.2:-82647063 | MS.gene99152:CDS |
ACATTCATCTACGGTTGCTT+TGG | 0.289832 | 8.2:-82643216 | MS.gene99152:CDS |
TGGATTGCTTTGACTCATTT+GGG | 0.302207 | 8.2:-82646735 | MS.gene99152:CDS |
CTTTCTTCCTTTGAAAGGTA+TGG | 0.302394 | 8.2:+82643379 | None:intergenic |
AGAAGATCCGACAGATGTTT+TGG | 0.307148 | 8.2:-82646512 | MS.gene99152:CDS |
AGAAGAGCCAACAAAAGTTT+TGG | 0.311700 | 8.2:-82646353 | MS.gene99152:CDS |
AGCAAATTGACTTGCGTTTA+CGG | 0.311768 | 8.2:+82648170 | None:intergenic |
CGAGAGAAAAGGAAGTTTCC+AGG | 0.319522 | 8.2:+82644289 | None:intergenic |
TATTCCTTGGGTTTACTGTT+AGG | 0.322982 | 8.2:+82640956 | None:intergenic |
TAAATTCGCAACAGCCTTAT+CGG | 0.327666 | 8.2:+82643493 | None:intergenic |
GATATTTCTTTAGGTGGTTA+TGG | 0.330159 | 8.2:-82645527 | MS.gene99152:intron |
GGGCATGCATGTATTAGATT+TGG | 0.331939 | 8.2:-82646320 | MS.gene99152:CDS |
TTCCTCCAAGATTCTTGTCT+TGG | 0.332691 | 8.2:+82643633 | None:intergenic |
GAGCTACTTTATTGTTAGAC+TGG | 0.342320 | 8.2:+82646041 | None:intergenic |
CTTTGAAAGGTATGGGTTCT+CGG | 0.344019 | 8.2:+82643387 | None:intergenic |
TAATTAACCAATCCTTCCTT+TGG | 0.344266 | 8.2:+82646592 | None:intergenic |
TGCGGGGCAGTGAAGAGCTT+TGG | 0.350904 | 8.2:-82641883 | MS.gene99152:CDS |
GCTTCCCTGTATTTGAAATT+CGG | 0.353794 | 8.2:+82646979 | None:intergenic |
AAAAGAAATTGCCAAATTGC+GGG | 0.357929 | 8.2:-82641900 | MS.gene99152:CDS |
GCGAGTTGCGGTGGTGGTTC+CGG | 0.362514 | 8.2:+82648457 | None:intergenic |
GAAGGTTTCAGAAGCTGCTT+TGG | 0.362927 | 8.2:+82646229 | None:intergenic |
TAGAAATCCGTTACTGTTAA+CGG | 0.364241 | 8.2:+82648270 | None:intergenic |
AATGATGATGTTGTTGGTAT+TGG | 0.365035 | 8.2:-82646772 | MS.gene99152:CDS |
TCACCAATTGCAAGCCGTTT+CGG | 0.366080 | 8.2:+82648025 | None:intergenic |
GATTCAATTGGAGAATGTTC+AGG | 0.367519 | 8.2:-82647012 | MS.gene99152:CDS |
CATTACACAAAGATTGATCT+TGG | 0.372033 | 8.2:+82646791 | None:intergenic |
TATTGGATCAGAGGACAAAA+TGG | 0.381016 | 8.2:-82646755 | MS.gene99152:CDS |
CCTATACGTATTGATTCAAT+TGG | 0.381191 | 8.2:-82647024 | MS.gene99152:CDS |
CAGAACCGAATTTCAAATAC+AGG | 0.382659 | 8.2:-82646984 | MS.gene99152:CDS |
TTAACGGAGAGAGGAGAATC+AGG | 0.386785 | 8.2:+82648286 | None:intergenic |
GCAAATTGACTTGCGTTTAC+GGG | 0.391662 | 8.2:+82648171 | None:intergenic |
AGGGCCCTAAGGTTGATATT+TGG | 0.397053 | 8.2:-82642068 | MS.gene99152:CDS |
CTCTACTATACATGCTGATT+GGG | 0.397374 | 8.2:-82642032 | MS.gene99152:CDS |
CTTTGTGTGCAACTTGCACC+AGG | 0.400113 | 8.2:+82641035 | None:intergenic |
TCAACACTAATCCTATTCCT+TGG | 0.401290 | 8.2:+82640943 | None:intergenic |
TAACAGTAAACCCAAGGAAT+AGG | 0.401457 | 8.2:-82640954 | MS.gene99152:CDS |
ATAGAGGAAGAAGAAGGTTC+AGG | 0.401686 | 8.2:-82645620 | MS.gene99152:intron |
CAACACTAATCCTATTCCTT+GGG | 0.403336 | 8.2:+82640944 | None:intergenic |
TAAAGAGGAAAGAGGTTTGA+AGG | 0.404692 | 8.2:-82646449 | MS.gene99152:CDS |
GCGGGGCAGTGAAGAGCTTT+GGG | 0.404708 | 8.2:-82641882 | MS.gene99152:CDS |
CCAATTGAATCAATACGTAT+AGG | 0.408213 | 8.2:+82647024 | None:intergenic |
AACTGTATTATAAAGTTTGA+AGG | 0.410114 | 8.2:-82644838 | MS.gene99152:CDS |
AGTGACTCGGTTAGAATTTG+AGG | 0.413649 | 8.2:+82646163 | None:intergenic |
AAAAGAGTTACTGCTCCTTC+AGG | 0.415796 | 8.2:-82643281 | MS.gene99152:CDS |
TTTCTTCCTTTGAAAGGTAT+GGG | 0.416112 | 8.2:+82643380 | None:intergenic |
ACTAATGAAGAAACTCTCAT+TGG | 0.417441 | 8.2:+82646897 | None:intergenic |
GCAACGTGACGGACGAAATC+CGG | 0.419646 | 8.2:+82648316 | None:intergenic |
TTCCTACGATCTGCCAGATC+TGG | 0.424122 | 8.2:+82643578 | None:intergenic |
CAGTGAAGAGCTTTGGGAGG+TGG | 0.427916 | 8.2:-82641876 | MS.gene99152:CDS |
GCTCCTTCAGGCAAGGTAGA+TGG | 0.430458 | 8.2:-82643269 | MS.gene99152:CDS |
ACTCTACTATACATGCTGAT+TGG | 0.431671 | 8.2:-82642033 | MS.gene99152:CDS |
GATCCGAAACGGCTTGCAAT+TGG | 0.437310 | 8.2:-82648028 | MS.gene99152:CDS |
CCGCTTCTTCAACGCTTCGC+CGG | 0.437967 | 8.2:-82648335 | MS.gene99152:CDS |
CCCTACTGTGGATGGTGAAA+AGG | 0.438053 | 8.2:-82646686 | MS.gene99152:CDS |
AGACGGGAGAGGAATATTAC+TGG | 0.438464 | 8.2:+82643673 | None:intergenic |
GAAACCTTCTCGCACATTGA+AGG | 0.438686 | 8.2:-82646215 | MS.gene99152:CDS |
AGTAATATTCCTCTCCCGTC+TGG | 0.446156 | 8.2:-82643671 | MS.gene99152:CDS |
TTCTCTCGAAAGCTAAAGAA+AGG | 0.446434 | 8.2:-82644274 | MS.gene99152:CDS |
GAGGAGAGAGAGGAGGTGCC+AGG | 0.448642 | 8.2:+82648405 | None:intergenic |
CGTCGACGGGATGACCGATC+TGG | 0.449155 | 8.2:+82648380 | None:intergenic |
ATTATAAAAGATTCAAAAGA+TGG | 0.450944 | 8.2:+82645641 | None:intergenic |
TTGTGTAATGATGATGTTGT+TGG | 0.453868 | 8.2:-82646778 | MS.gene99152:CDS |
GCCGACCAAATATCAACCTT+AGG | 0.456009 | 8.2:+82642063 | None:intergenic |
TATTCCGCTCATTATTTACA+TGG | 0.456851 | 8.2:+82644965 | None:intergenic |
AAGGTTGATATTTGGTCGGC+TGG | 0.458152 | 8.2:-82642060 | MS.gene99152:CDS |
GTGGTCCAAGACAAGAATCT+TGG | 0.458901 | 8.2:-82643638 | MS.gene99152:CDS |
TTTGAAGGTTCTTTCAAAAG+TGG | 0.458914 | 8.2:-82644823 | MS.gene99152:CDS |
GTGCAATGAAATTTGAGTCT+CGG | 0.462949 | 8.2:-82647074 | MS.gene99152:CDS |
GGATCTTCTCCACATGCTAC+AGG | 0.465432 | 8.2:+82646526 | None:intergenic |
GATTGATCTTGGACACTAGT+TGG | 0.465730 | 8.2:+82646802 | None:intergenic |
AACAAAGGGTTTCCGTGCCC+CGG | 0.466552 | 8.2:-82643047 | MS.gene99152:CDS |
TAAAAGGGAATTGCCAGATC+TGG | 0.468469 | 8.2:-82643591 | MS.gene99152:CDS |
GGCTCTTCTCCACATACTAC+AGG | 0.475497 | 8.2:+82646367 | None:intergenic |
CTTAGTGCTAGTAACATCTC+TGG | 0.475547 | 8.2:+82643430 | None:intergenic |
TCCAATTCCAAAACATCTGT+CGG | 0.478188 | 8.2:+82646505 | None:intergenic |
AACATTATTGAAGGTGATGA+AGG | 0.478543 | 8.2:-82646085 | MS.gene99152:CDS |
AATGATCAGAACATTATTGA+AGG | 0.479243 | 8.2:-82646094 | MS.gene99152:CDS |
AAATTCGCAACAGCCTTATC+GGG | 0.479709 | 8.2:+82643494 | None:intergenic |
TTGTTCAGATCTCAGTTTCA+GGG | 0.479868 | 8.2:-82642087 | MS.gene99152:CDS |
GGCTCTAACATCCAATAAAA+GGG | 0.480027 | 8.2:-82643606 | MS.gene99152:CDS |
GGTCCATGTGTTGGAACAAA+GGG | 0.481545 | 8.2:-82643061 | MS.gene99152:CDS |
GCAACCGTAGATGAATGTAT+AGG | 0.482776 | 8.2:+82643221 | None:intergenic |
CACTCCTCGAAGACCAATCC+TGG | 0.482873 | 8.2:-82648423 | MS.gene99152:CDS |
AGATTCTTGTCTTGGACCAC+AGG | 0.483607 | 8.2:+82643641 | None:intergenic |
AGGATGCTTCAACGAGGACT+TGG | 0.483684 | 8.2:-82640865 | MS.gene99152:CDS |
AGCTCCTTTCTTCCTTTGAA+AGG | 0.484570 | 8.2:+82643374 | None:intergenic |
CCGACCAAATATCAACCTTA+GGG | 0.486366 | 8.2:+82642064 | None:intergenic |
CCACTGGAAAGGATGTTTCA+CGG | 0.486521 | 8.2:+82641840 | None:intergenic |
ATTGGGAAAACTTCTTTCCC+TGG | 0.486809 | 8.2:-82642015 | MS.gene99152:CDS |
ATCTCAGTTTCAGGGCCCTA+AGG | 0.486826 | 8.2:-82642079 | MS.gene99152:CDS |
GAAAGATACTCCGCGTCGAC+GGG | 0.487994 | 8.2:+82648367 | None:intergenic |
GGATCGGCGAGTTGCGGTGG+TGG | 0.491104 | 8.2:+82648451 | None:intergenic |
TCTTTAGCTTTCGAGAGAAA+AGG | 0.491702 | 8.2:+82644278 | None:intergenic |
GATGGAAGATGTTGCTCAAA+GGG | 0.492219 | 8.2:-82646554 | MS.gene99152:CDS |
GAGAGAGGAGGTGCCAGGAT+TGG | 0.493624 | 8.2:+82648410 | None:intergenic |
AAGAGGTCCAAAGGAAGGAT+TGG | 0.493708 | 8.2:-82646599 | MS.gene99152:CDS |
CAAGAATCTTGGAGGAATCA+AGG | 0.494455 | 8.2:-82643627 | MS.gene99152:CDS |
TTTATAATAGAGGAAGAAGA+AGG | 0.495240 | 8.2:-82645626 | MS.gene99152:CDS |
TTACTGGATGCATCAAGCCT+TGG | 0.496091 | 8.2:+82643689 | None:intergenic |
GAGGAAAGAGGTTTGAAGGA+AGG | 0.496387 | 8.2:-82646445 | MS.gene99152:CDS |
AGCACAAGGAGCAGATGGCT+CGG | 0.498407 | 8.2:-82643465 | MS.gene99152:CDS |
CTCTCTCTCCTCCTCCAGAT+CGG | 0.499013 | 8.2:-82648394 | MS.gene99152:CDS |
ATATGTGAGCTTCAGTGGTA+TGG | 0.499209 | 8.2:-82644462 | MS.gene99152:CDS |
AAACCTTCTCGCACATTGAA+GGG | 0.499606 | 8.2:-82646214 | MS.gene99152:CDS |
AAGCTGCTTTCGCCATGGCT+AGG | 0.503048 | 8.2:-82648234 | MS.gene99152:CDS |
GCACAAGGAGCAGATGGCTC+GGG | 0.506807 | 8.2:-82643464 | MS.gene99152:CDS |
TAAAAGAAATTGCCAAATTG+CGG | 0.506980 | 8.2:-82641901 | MS.gene99152:CDS |
CGTTGAAGCTGCTTTCGCCA+TGG | 0.511259 | 8.2:-82648239 | MS.gene99152:CDS |
TTGCGTTTACGGGAGTGAAA+CGG | 0.511839 | 8.2:+82648181 | None:intergenic |
CATACCTTTCAAAGGAAGAA+AGG | 0.513266 | 8.2:-82643378 | MS.gene99152:CDS |
TTAGTGTTGAAGATGTTCTC+AGG | 0.521851 | 8.2:-82640930 | MS.gene99152:CDS |
ATGGTCAAAGGAGAGATATC+TGG | 0.525173 | 8.2:-82646934 | MS.gene99152:CDS |
TATGTGAGCTTCAGTGGTAT+GGG | 0.526504 | 8.2:-82644461 | MS.gene99152:CDS |
TGAAATTCGTAAGCATATGA+AGG | 0.528442 | 8.2:-82643549 | MS.gene99152:CDS |
TATTGAAGGTGATGAAGGTA+AGG | 0.529301 | 8.2:-82646080 | MS.gene99152:CDS |
GTTCACAGAGATGTTAAACC+TGG | 0.530796 | 8.2:-82644307 | MS.gene99152:CDS |
AGCTACTTTATTGTTAGACT+GGG | 0.530901 | 8.2:+82646042 | None:intergenic |
TGGTCTTCGAGGAGTGGAGT+TGG | 0.531805 | 8.2:+82648430 | None:intergenic |
GATGGAAGATGTTGCTCTGA+GGG | 0.533130 | 8.2:-82646395 | MS.gene99152:CDS |
CATGGCGAAAGCAGCTTCAA+CGG | 0.534287 | 8.2:+82648240 | None:intergenic |
AAACCCTTTGTTCCAACACA+TGG | 0.534397 | 8.2:+82643058 | None:intergenic |
CATCAGTTGTTCTATGAGCA+CGG | 0.536001 | 8.2:+82645495 | None:intergenic |
AGAAGAGAAAAGAGGTCCAA+AGG | 0.536493 | 8.2:-82646608 | MS.gene99152:CDS |
CGTGCTCATAGAACAACTGA+TGG | 0.537080 | 8.2:-82645494 | MS.gene99152:CDS |
TGGCAAGGTTGAAGTCGATA+AGG | 0.538478 | 8.2:+82644248 | None:intergenic |
GAGAAAAGAGGTCCAAAGGA+AGG | 0.538859 | 8.2:-82646604 | MS.gene99152:CDS |
ATAAATAAAGAAGAGAAAAG+AGG | 0.539398 | 8.2:-82646616 | MS.gene99152:CDS |
TTGATATATGTGAGCTTCAG+TGG | 0.539584 | 8.2:-82644467 | MS.gene99152:CDS |
TGTTTCACGGTCATGCAGCT+TGG | 0.540699 | 8.2:+82641853 | None:intergenic |
AACATAACCCCTACTGTGGA+TGG | 0.541969 | 8.2:-82646694 | MS.gene99152:CDS |
CCCTAAGGTTGATATTTGGT+CGG | 0.545440 | 8.2:-82642064 | MS.gene99152:CDS |
ATGAAGGCAAAAGCGGATGC+TGG | 0.545882 | 8.2:-82643533 | MS.gene99152:CDS |
CGATCTGGAGGAGGAGAGAG+AGG | 0.549243 | 8.2:+82648395 | None:intergenic |
CCGGCGAAGCGTTGAAGAAG+CGG | 0.552425 | 8.2:+82648335 | None:intergenic |
TTCGAGGAGTGGAGTTGGAT+CGG | 0.552545 | 8.2:+82648435 | None:intergenic |
AAGCTGCTTTGGATTTGAAG+AGG | 0.554463 | 8.2:+82646240 | None:intergenic |
GTAGATGAATGTATAGGCAT+TGG | 0.557803 | 8.2:+82643227 | None:intergenic |
GGAAAGATACTCCGCGTCGA+CGG | 0.560979 | 8.2:+82648366 | None:intergenic |
GGGTCCATGTGTTGGAACAA+AGG | 0.561472 | 8.2:-82643062 | MS.gene99152:CDS |
CGTTGAAGAAGCGGCAACGA+AGG | 0.561497 | 8.2:+82648344 | None:intergenic |
AGATGGAAGATGTTGCTCAA+AGG | 0.563134 | 8.2:-82646555 | MS.gene99152:CDS |
AAGAATTTACCTCCGGGGCA+CGG | 0.563272 | 8.2:+82643035 | None:intergenic |
AGGGTCAATCCTGTAGTATG+TGG | 0.564548 | 8.2:-82646376 | MS.gene99152:CDS |
GATTCTTGTCTTGGACCACA+GGG | 0.566206 | 8.2:+82643642 | None:intergenic |
CCTCTCTCCGTTAACAGTAA+CGG | 0.568053 | 8.2:-82648277 | MS.gene99152:CDS |
GGGGAAGAACCAGACGGGAG+AGG | 0.568805 | 8.2:+82643662 | None:intergenic |
CGTAGAGCACAAGGAGCAGA+TGG | 0.571518 | 8.2:-82643470 | MS.gene99152:CDS |
TATGGGTTCTCGGAGCCTAT+CGG | 0.573323 | 8.2:+82643397 | None:intergenic |
CTAAGACTGCTTCTGCCGAT+AGG | 0.573679 | 8.2:-82643412 | MS.gene99152:CDS |
TTATGAGAATGATAGAGAGA+TGG | 0.574463 | 8.2:-82646572 | MS.gene99152:CDS |
CCGTTACTGTTAACGGAGAG+AGG | 0.575451 | 8.2:+82648277 | None:intergenic |
AAAAGAGAGGGTCCATGTGT+TGG | 0.577815 | 8.2:-82643070 | MS.gene99152:CDS |
GTCCAAGACAAGAATCTTGG+AGG | 0.578441 | 8.2:-82643635 | MS.gene99152:CDS |
CGGGATGACCGATCTGGAGG+AGG | 0.579997 | 8.2:+82648386 | None:intergenic |
TTGGGGTTATTAAGAAGCAA+AGG | 0.581215 | 8.2:-82643197 | MS.gene99152:intron |
TTTGTTACAGGCTAGTGACT+CGG | 0.581585 | 8.2:+82646150 | None:intergenic |
CTGCCATCTACCTTGCCTGA+AGG | 0.582954 | 8.2:+82643266 | None:intergenic |
AAAGGAATTTACCACTGGAA+AGG | 0.583882 | 8.2:+82641829 | None:intergenic |
TATCGACTTCAACCTTGCCA+TGG | 0.583985 | 8.2:-82644245 | MS.gene99152:intron |
CCGATCCAAAATGTCTCCGC+CGG | 0.584581 | 8.2:-82648476 | None:intergenic |
AACCTTCTCGCACATTGAAG+GGG | 0.587830 | 8.2:-82646213 | MS.gene99152:CDS |
CAGGATTGGTCTTCGAGGAG+TGG | 0.587880 | 8.2:+82648424 | None:intergenic |
GTTGGATCGGCGAGTTGCGG+TGG | 0.588249 | 8.2:+82648448 | None:intergenic |
CGAGGGTCTAGATAGATTCG+TGG | 0.588972 | 8.2:-82646854 | MS.gene99152:CDS |
TGGTGGAGCAAGATTAGCAA+AGG | 0.589902 | 8.2:+82646822 | None:intergenic |
TGTCATATGATTGCAAGTAT+CGG | 0.590214 | 8.2:+82641064 | None:intergenic |
TGATCTTGGACACTAGTTGG+TGG | 0.590604 | 8.2:+82646805 | None:intergenic |
GCGAAAGCAGCTTCAACGGA+AGG | 0.591262 | 8.2:+82648244 | None:intergenic |
CGAGAACCCATACCTTTCAA+AGG | 0.593233 | 8.2:-82643386 | MS.gene99152:CDS |
GCTAGTAACATCTCTGGCAG+AGG | 0.593503 | 8.2:+82643436 | None:intergenic |
GGTGCCAGGATTGGTCTTCG+AGG | 0.593716 | 8.2:+82648419 | None:intergenic |
CTTCAGGCAAGGTAGATGGC+AGG | 0.594037 | 8.2:-82643265 | MS.gene99152:CDS |
CAGGTGGAAGAGATCCGAAA+CGG | 0.595991 | 8.2:-82648039 | MS.gene99152:CDS |
GGTGGAGCAAGATTAGCAAA+GGG | 0.597178 | 8.2:+82646823 | None:intergenic |
AATGCCTATACATTCATCTA+CGG | 0.599137 | 8.2:-82643225 | MS.gene99152:CDS |
AGTCTCGGATTGTAAATGGT+GGG | 0.602244 | 8.2:-82647059 | MS.gene99152:CDS |
TCAATTTGCTCAATCACTCA+AGG | 0.603232 | 8.2:-82648157 | MS.gene99152:intron |
GTTGAAGAAGCGGCAACGAA+GGG | 0.603458 | 8.2:+82648345 | None:intergenic |
CCACAGGGGAAGAACCAGAC+GGG | 0.606761 | 8.2:+82643657 | None:intergenic |
ACCTTCTCGCACATTGAAGG+GGG | 0.609586 | 8.2:-82646212 | MS.gene99152:CDS |
GGCATAACAAGCATGGTCAA+AGG | 0.610521 | 8.2:-82646946 | MS.gene99152:CDS |
GAGTCTCGGATTGTAAATGG+TGG | 0.614229 | 8.2:-82647060 | MS.gene99152:CDS |
TGCCAGATCTGGCAGATCGT+AGG | 0.614643 | 8.2:-82643580 | MS.gene99152:CDS |
GCGAATTTACGTAGAGCACA+AGG | 0.616884 | 8.2:-82643479 | MS.gene99152:CDS |
CCCGTCTGGTTCTTCCCCTG+TGG | 0.618731 | 8.2:-82643657 | MS.gene99152:CDS |
GGGCAGTGAAGAGCTTTGGG+AGG | 0.619718 | 8.2:-82641879 | MS.gene99152:CDS |
ATTCATCTACGGTTGCTTTG+GGG | 0.621492 | 8.2:-82643214 | MS.gene99152:CDS |
AGTTGCGGTGGTGGTTCCGG+CGG | 0.621987 | 8.2:+82648460 | None:intergenic |
TAAGCATATGAAGGCAAAAG+CGG | 0.635350 | 8.2:-82643540 | MS.gene99152:CDS |
AGATGGAAGATGTTGCTCTG+AGG | 0.636022 | 8.2:-82646396 | MS.gene99152:CDS |
AGTTACTGCTCCTTCAGGCA+AGG | 0.636110 | 8.2:-82643276 | MS.gene99152:CDS |
TACAGGGAAGCTGATAATGA+CGG | 0.636287 | 8.2:-82646967 | MS.gene99152:CDS |
CGACGGGATGACCGATCTGG+AGG | 0.637015 | 8.2:+82648383 | None:intergenic |
GGAGTTGGATCGGCGAGTTG+CGG | 0.637588 | 8.2:+82648445 | None:intergenic |
TGAAAAGTCCTTCTTCTCAG+AGG | 0.638414 | 8.2:-82643304 | MS.gene99152:CDS |
TTTACTGTTCTGGTTCGCCA+GGG | 0.640055 | 8.2:+82641998 | None:intergenic |
GACGGAAAACATAAAAGAGA+GGG | 0.640908 | 8.2:-82643082 | MS.gene99152:CDS |
GAGGGTCTAGATAGATTCGT+GGG | 0.642595 | 8.2:-82646853 | MS.gene99152:CDS |
ACTTGCGTGCTTGCACAAAG+AGG | 0.643572 | 8.2:-82644421 | MS.gene99152:intron |
AGGGTCGATCCTGTAGCATG+TGG | 0.645672 | 8.2:-82646535 | MS.gene99152:CDS |
AAGTGACTCGAGGAAGCTCG+AGG | 0.646512 | 8.2:-82646872 | MS.gene99152:CDS |
AGAACCGAATTTCAAATACA+GGG | 0.647420 | 8.2:-82646983 | MS.gene99152:CDS |
TGTTGTTGGTATTGGATCAG+AGG | 0.649031 | 8.2:-82646764 | MS.gene99152:CDS |
AAAGAAATTGCCAAATTGCG+GGG | 0.650726 | 8.2:-82641899 | MS.gene99152:CDS |
AAAACCATGTAAATAATGAG+CGG | 0.651500 | 8.2:-82644969 | MS.gene99152:CDS |
TAATGACGGCATAACAAGCA+TGG | 0.654148 | 8.2:-82646953 | MS.gene99152:CDS |
GAAGCAACCTAACCATGGCA+AGG | 0.654219 | 8.2:+82644233 | None:intergenic |
TGAAGGTAAGGATCAGAACA+TGG | 0.659752 | 8.2:-82646068 | MS.gene99152:CDS |
ACTCAGGTAAATCAAAACCA+AGG | 0.660436 | 8.2:-82643706 | MS.gene99152:intron |
AGTGCCTAACAGTAAACCCA+AGG | 0.662467 | 8.2:-82640960 | MS.gene99152:CDS |
AGTGACTCGAGGAAGCTCGA+GGG | 0.663036 | 8.2:-82646871 | MS.gene99152:CDS |
ACAAAACATAACCCCTACTG+TGG | 0.663994 | 8.2:-82646698 | MS.gene99152:CDS |
GGACGGAAAACATAAAAGAG+AGG | 0.664528 | 8.2:-82643083 | MS.gene99152:CDS |
CAGGAAGTGAAGCAACGTGA+CGG | 0.666927 | 8.2:+82648305 | None:intergenic |
TTGAAGCAGAAGTACAACAT+CGG | 0.674249 | 8.2:-82644133 | MS.gene99152:CDS |
AATCATATGACATAGAAACC+TGG | 0.675049 | 8.2:-82641053 | MS.gene99152:CDS |
TCTGGAGGAGGAGAGAGAGG+AGG | 0.676330 | 8.2:+82648398 | None:intergenic |
TCATTAGTGAAAGTGACTCG+AGG | 0.676728 | 8.2:-82646882 | MS.gene99152:CDS |
ATGAGATCATGAGAAAGACA+AGG | 0.685426 | 8.2:-82640885 | MS.gene99152:CDS |
AAAGGGTTTCCGTGCCCCGG+AGG | 0.686493 | 8.2:-82643044 | MS.gene99152:intron |
ACCACAGGGGAAGAACCAGA+CGG | 0.689092 | 8.2:+82643656 | None:intergenic |
TCTCATGATCTCATTACACG+AGG | 0.690799 | 8.2:+82640894 | None:intergenic |
CCGTGAAACATCCTTTCCAG+TGG | 0.691680 | 8.2:-82641840 | MS.gene99152:intron |
GATCGGTCATCCCGTCGACG+CGG | 0.695572 | 8.2:-82648377 | MS.gene99152:CDS |
AGCGCAAGAATTTACCTCCG+GGG | 0.710001 | 8.2:+82643030 | None:intergenic |
CCTTCTCGCACATTGAAGGG+GGG | 0.716670 | 8.2:-82646211 | MS.gene99152:CDS |
TGTTGAGCATGAGAGACCTG+AGG | 0.737768 | 8.2:-82644773 | MS.gene99152:intron |
ATTCTTGTCTTGGACCACAG+GGG | 0.743915 | 8.2:+82643643 | None:intergenic |
AAGACAAGGATGCTTCAACG+AGG | 0.751606 | 8.2:-82640871 | MS.gene99152:CDS |
ATTGCATAGAATTCTGCACG+AGG | 0.772903 | 8.2:+82643345 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 82640831 | 82648488 | 82640831 | ID=MS.gene99152 |
chr8.2 | mRNA | 82640831 | 82648488 | 82640831 | ID=MS.gene99152.t1;Parent=MS.gene99152 |
chr8.2 | exon | 82648158 | 82648488 | 82648158 | ID=MS.gene99152.t1.exon1;Parent=MS.gene99152.t1 |
chr8.2 | CDS | 82648158 | 82648488 | 82648158 | ID=cds.MS.gene99152.t1;Parent=MS.gene99152.t1 |
chr8.2 | exon | 82648000 | 82648058 | 82648000 | ID=MS.gene99152.t1.exon2;Parent=MS.gene99152.t1 |
chr8.2 | CDS | 82648000 | 82648058 | 82648000 | ID=cds.MS.gene99152.t1;Parent=MS.gene99152.t1 |
chr8.2 | exon | 82646048 | 82647142 | 82646048 | ID=MS.gene99152.t1.exon3;Parent=MS.gene99152.t1 |
chr8.2 | CDS | 82646048 | 82647142 | 82646048 | ID=cds.MS.gene99152.t1;Parent=MS.gene99152.t1 |
chr8.2 | exon | 82645621 | 82645681 | 82645621 | ID=MS.gene99152.t1.exon4;Parent=MS.gene99152.t1 |
chr8.2 | CDS | 82645621 | 82645681 | 82645621 | ID=cds.MS.gene99152.t1;Parent=MS.gene99152.t1 |
chr8.2 | exon | 82645474 | 82645536 | 82645474 | ID=MS.gene99152.t1.exon5;Parent=MS.gene99152.t1 |
chr8.2 | CDS | 82645474 | 82645536 | 82645474 | ID=cds.MS.gene99152.t1;Parent=MS.gene99152.t1 |
chr8.2 | exon | 82644949 | 82645012 | 82644949 | ID=MS.gene99152.t1.exon6;Parent=MS.gene99152.t1 |
chr8.2 | CDS | 82644949 | 82645012 | 82644949 | ID=cds.MS.gene99152.t1;Parent=MS.gene99152.t1 |
chr8.2 | exon | 82644774 | 82644867 | 82644774 | ID=MS.gene99152.t1.exon7;Parent=MS.gene99152.t1 |
chr8.2 | CDS | 82644774 | 82644867 | 82644774 | ID=cds.MS.gene99152.t1;Parent=MS.gene99152.t1 |
chr8.2 | exon | 82644422 | 82644505 | 82644422 | ID=MS.gene99152.t1.exon8;Parent=MS.gene99152.t1 |
chr8.2 | CDS | 82644422 | 82644505 | 82644422 | ID=cds.MS.gene99152.t1;Parent=MS.gene99152.t1 |
chr8.2 | exon | 82644246 | 82644335 | 82644246 | ID=MS.gene99152.t1.exon9;Parent=MS.gene99152.t1 |
chr8.2 | CDS | 82644246 | 82644335 | 82644246 | ID=cds.MS.gene99152.t1;Parent=MS.gene99152.t1 |
chr8.2 | exon | 82644131 | 82644158 | 82644131 | ID=MS.gene99152.t1.exon10;Parent=MS.gene99152.t1 |
chr8.2 | CDS | 82644131 | 82644158 | 82644131 | ID=cds.MS.gene99152.t1;Parent=MS.gene99152.t1 |
chr8.2 | exon | 82643198 | 82643722 | 82643198 | ID=MS.gene99152.t1.exon11;Parent=MS.gene99152.t1 |
chr8.2 | CDS | 82643198 | 82643722 | 82643198 | ID=cds.MS.gene99152.t1;Parent=MS.gene99152.t1 |
chr8.2 | exon | 82643045 | 82643106 | 82643045 | ID=MS.gene99152.t1.exon12;Parent=MS.gene99152.t1 |
chr8.2 | CDS | 82643045 | 82643106 | 82643045 | ID=cds.MS.gene99152.t1;Parent=MS.gene99152.t1 |
chr8.2 | exon | 82642003 | 82642112 | 82642003 | ID=MS.gene99152.t1.exon13;Parent=MS.gene99152.t1 |
chr8.2 | CDS | 82642003 | 82642112 | 82642003 | ID=cds.MS.gene99152.t1;Parent=MS.gene99152.t1 |
chr8.2 | exon | 82641841 | 82641928 | 82641841 | ID=MS.gene99152.t1.exon14;Parent=MS.gene99152.t1 |
chr8.2 | CDS | 82641841 | 82641928 | 82641841 | ID=cds.MS.gene99152.t1;Parent=MS.gene99152.t1 |
chr8.2 | exon | 82640831 | 82641100 | 82640831 | ID=MS.gene99152.t1.exon15;Parent=MS.gene99152.t1 |
chr8.2 | CDS | 82640831 | 82641100 | 82640831 | ID=cds.MS.gene99152.t1;Parent=MS.gene99152.t1 |
Gene Sequence |
Protein sequence |