AlfalfaGEDB | MsG0080047883.01

M. sativa cultivar ZhongmuNo.1 / MsG0080047883.01

KEGG: -
GO: GO:0005506 GO:0016705 GO:0020037 GO:0055114
PFAM: PF00067

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080047883.01.T01	GAU27760.1	78.261	207	42	2	102	308	31	234	1.89E-105	325

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080047883.01.T01	H2DH18	44.175	206	112	2	102	307	98	300	1.01E-53	186

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080047883.01.T01	A0A2Z6MVM5	78.261	207	42	2	102	308	31	234	9.04e-106	325

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047883.01	MsG0080047884.01	0.962344	9.145521e-121	4.544866e-115
MsG0080047883.01	MsG0080047885.01	0.849044	4.161805e-60	7.790164e-57
MsG0080047883.01	MsG0080048727.01	0.834218	3.404241e-56	4.013020e-53
MsG0080047883.01	MsG0080048748.01	0.824053	9.939072e-54	8.707220e-51
MsG0080047883.01	MsG0080048845.01	0.801714	7.903144e-49	3.800597e-46
MsG0080047883.01	MsG0080048849.01	0.816565	5.179302e-52	3.682691e-49
MsG0080047883.01	MsG0080048938.01	0.812375	4.375034e-51	2.777020e-48
MsG0080047883.01	MsG0080049040.01	0.808455	3.071114e-50	1.756856e-47
MsG0080047883.01	MsG0080049068.01	0.809486	1.848023e-50	1.086381e-47
MsG0080047883.01	MsG0180000017.01	0.808844	2.536118e-50	1.465549e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080047883.01.T01	MTR_5g070690	76.812	207	46	1	102	308	100	304	6.04e-102	309
MsG0080047883.01.T01	MTR_5g070800	76.812	207	46	1	102	308	100	304	6.04e-102	309
MsG0080047883.01.T01	MTR_5g070850	70.952	210	59	1	99	308	99	306	5.92e-101	306
MsG0080047883.01.T01	MTR_5g470730	69.048	210	63	1	99	308	99	306	8.00e-99	298
MsG0080047883.01.T01	MTR_5g070700	75.598	209	49	1	99	307	99	305	2.62e-97	297
MsG0080047883.01.T01	MTR_5g070710	70.813	209	57	2	99	307	98	302	1.33e-95	292
MsG0080047883.01.T01	MTR_5g070920	71.905	210	56	2	99	308	99	305	1.71e-90	279
MsG0080047883.01.T01	MTR_5g070830	74.211	190	47	1	119	308	229	416	8.02e-85	268
MsG0080047883.01.T01	MTR_6g084770	55.288	208	88	4	102	307	102	306	2.69e-65	214
MsG0080047883.01.T01	MTR_5g070980	69.173	133	39	1	99	231	99	229	2.08e-49	165

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080047883.01.T01	AT3G48310	33.014	209	124	6	102	308	97	291	2.51e-27	112
MsG0080047883.01.T01	AT3G48320	33.810	210	121	7	102	308	97	291	6.61e-27	110
MsG0080047883.01.T01	AT2G30770	33.175	211	126	7	102	308	98	297	8.11e-25	104
MsG0080047883.01.T01	AT4G13310	29.630	216	136	6	99	308	94	299	1.72e-22	97.4
MsG0080047883.01.T01	AT4G13310	29.630	216	136	6	99	308	94	299	2.91e-22	97.4
MsG0080047883.01.T01	AT3G48290	30.476	210	128	7	102	308	98	292	3.91e-22	97.1
MsG0080047883.01.T01	AT2G30750	33.953	215	125	6	99	308	95	297	4.51e-22	97.1
MsG0080047883.01.T01	AT5G24950	28.505	214	139	5	99	308	94	297	1.54e-21	95.5
MsG0080047883.01.T01	AT3G48300	30.144	209	130	7	102	308	94	288	1.72e-21	95.1
MsG0080047883.01.T01	AT3G48300	30.144	209	130	7	102	308	96	290	1.74e-21	95.1

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Find 56 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAAGAGTTGGATGTTT+TGG	0.267848	contig133end:+16086	MsG0080047883.01.T01:CDS
AACAAGTAAATCACTTGATG+AGG	0.576535	contig133end:+16471	MsG0080047883.01.T01:CDS
AAGCAAATGGAACAAAGTTA+GGG	0.486431	contig133end:+13491	MsG0080047883.01.T01:CDS
AAGTTGTTTGGTTTGAGCAA+AGG	0.531979	contig133end:+13468	MsG0080047883.01.T01:CDS
AATATGTATAAGATGATACT+CGG	0.646466	contig133end:+16186	MsG0080047883.01.T01:CDS
AGAAAGAATGACAAGTTGTT+TGG	0.343684	contig133end:+13456	MsG0080047883.01.T01:CDS
AGATAAAGCCCATTCAATCG+CGG	0.715698	contig133end:-16694	MsG0080047882.01.T01:intergenic
AGCTCAGATCCTTGAGTCTT+TGG	0.286174	contig133end:-15934	MsG0080047883.01.T01:intergenic
AGTAAAATTGCCTTAATGTT+TGG	0.328799	contig133end:-16634	MsG0080047883.01.T01:intergenic
ATATCAAATGCTCCTAGCCA+AGG	0.600570	contig133end:-16297	MsG0080047883.01.T01:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAGTAAATCACTTGATG+AGG	+	contig133end:16471-16490	MsG0080047883.01.T01:CDS	30.0%
AAGAAACATTGAAGTTAGCT+AGG	-	contig133end:15657-15676	MsG0080047883.01.T01:intergenic	30.0%
AAGCAAATGGAACAAAGTTA+GGG	+	contig133end:13491-13510	MsG0080047883.01.T01:CDS	30.0%
ACAGGTTTCTAATGATCATA+AGG	+	contig133end:13715-13734	MsG0080047883.01.T01:intron	30.0%
ACATACTATCTCTTATACCT+CGG	-	contig133end:14412-14431	MsG0080047883.01.T01:intergenic	30.0%
AGAAAGAATGACAAGTTGTT+TGG	+	contig133end:13456-13475	MsG0080047883.01.T01:CDS	30.0%
AGATAATTACTCAATCCCAA+AGG	-	contig133end:13593-13612	MsG0080047883.01.T01:intergenic	30.0%
ATAACAAGCATGGTAAGAAA+AGG	-	contig133end:13664-13683	MsG0080047883.01.T01:intergenic	30.0%
ATACACAAGTATAACAAGCA+TGG	-	contig133end:13674-13693	MsG0080047883.01.T01:intergenic	30.0%
ATTAGTTGTTTGTTCATGCT+CGG	-	contig133end:16515-16534	MsG0080047883.01.T01:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
contig133end	gene	13420	16726	13420	ID=MsG0080047883.01;Name=MsG0080047883.01
contig133end	mRNA	13420	16726	13420	ID=MsG0080047883.01.T01;Parent=MsG0080047883.01;Name=MsG0080047883.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|0.33\|0.25\|0.5\|1\|1\|4\|0\|326
contig133end	exon	16448	16726	16448	ID=MsG0080047883.01.T01:exon:26593;Parent=MsG0080047883.01.T01
contig133end	exon	15901	16323	15901	ID=MsG0080047883.01.T01:exon:26592;Parent=MsG0080047883.01.T01
contig133end	exon	15349	15482	15349	ID=MsG0080047883.01.T01:exon:26591;Parent=MsG0080047883.01.T01
contig133end	exon	13420	13564	13420	ID=MsG0080047883.01.T01:exon:26590;Parent=MsG0080047883.01.T01
contig133end	CDS	13420	13564	13420	ID=MsG0080047883.01.T01:cds;Parent=MsG0080047883.01.T01
contig133end	CDS	15349	15482	15349	ID=MsG0080047883.01.T01:cds;Parent=MsG0080047883.01.T01
contig133end	CDS	15901	16323	15901	ID=MsG0080047883.01.T01:cds;Parent=MsG0080047883.01.T01
contig133end	CDS	16448	16726	16448	ID=MsG0080047883.01.T01:cds;Parent=MsG0080047883.01.T01

Gene Sequence

>MsG0080047883.01.T01

ATGGTTTCTTCATGGTCAAGGTGTGTCAGTTTTGCAAGAAAGAATGACAAGTTGTTTGGTTTGAGCAAAGGAAGCAAATGGAACAAAGTTAGGGTTTTGGCTTGTTTGGGCATGGAACTTGGTGATGCTTCAAGAACTTCATTAGATAACAGGATGGTTTGGGAAGCAAGTAGCCGGATGGATGTTTCAGCAAGTGTTCGTTCGTATCAGCGGCAGCAGGATATGGATAATCAAGGATGTCCTTATTATATTTTAGAAAAGTTGAGTTGTAACCTTATTAATCATTCCTCAAAACTCATGACATCAAGCCGACCAAAGACTCAAGGATCTGAGCTCATGTCAAATGGTGCAAAGGGATTGGCTTTTTCTGAGTATGGTCCTTATTGGCATAGCGTCAGAAAACTTTGCACTTTAAAACTTCTTAATGTTAATGATTCAAAAGTTGAGATGTTTGGTCCTATTAGAAAGCAAGAGTTGGATGTTTTGGTTAAATCTTTGATGAAAGCTGCTTTGGTAGGTGAAGTTGTGAATGTTAGTGAGGCTGTACAAAATCTTATAGAGGAAAATATGTATAAGATGATACTCGGTAGGAGTAAGTGTGAGCAATTTGACTTGAAGAAGTTGGTTCAAGAAGGAGTGGCTTTGACAGGAGCTTTTAATCTAGCTGATTATGTTCCTTGGCTAGGAGCATTTGATATTCAGGGATTAACACGAGCATGCAAGAAAACAAGTAAATCACTTGATGAGGTGCTGAAGATGATAATAACCGAGCATGAACAAACAACTAATGTAGACAAAACTCATCATGAAGACTTCGTAGACATACTACTCTCAATTAAGCACCAAACCATAGGTCCAAAAAATGAACAGAAACATGTCATTGATCGACCAAACATTAAGGCAATTTTACTAGACATGGTTATATGGCAGCAATTGAAACATCTGCTACCGCGATTGAATGGGCTTTATCTGAACTTTTAA

Protein sequence

>MsG0080047883.01.T01

MVSSWSRCVSFARKNDKLFGLSKGSKWNKVRVLACLGMELGDASRTSLDNRMVWEASSRMDVSASVRSYQRQQDMDNQGCPYYILEKLSCNLINHSSKLMTSSRPKTQGSELMSNGAKGLAFSEYGPYWHSVRKLCTLKLLNVNDSKVEMFGPIRKQELDVLVKSLMKAALVGEVVNVSEAVQNLIEENMYKMILGRSKCEQFDLKKLVQEGVALTGAFNLADYVPWLGAFDIQGLTRACKKTSKSLDEVLKMIITEHEQTTNVDKTHHEDFVDILLSIKHQTIGPKNEQKHVIDRPNIKAILLDMVIWQQLKHLLPRLNGLYLNF*