AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080047884.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047884.01.T01 MTR_5g070690 76.812 207 46 1 32 238 100 304 5.24e-103 308
MsG0080047884.01.T01 MTR_5g070800 76.812 207 46 1 32 238 100 304 5.24e-103 308
MsG0080047884.01.T01 MTR_5g070850 70.952 210 59 1 29 238 99 306 2.94e-102 307
MsG0080047884.01.T01 MTR_5g470730 69.048 210 63 1 29 238 99 306 5.28e-100 298
MsG0080047884.01.T01 MTR_5g070700 75.598 209 49 1 29 237 99 305 1.34e-98 297
MsG0080047884.01.T01 MTR_5g070710 70.813 209 57 2 29 237 98 302 7.99e-97 293
MsG0080047884.01.T01 MTR_5g070920 71.905 210 56 2 29 238 99 305 7.68e-92 280
MsG0080047884.01.T01 MTR_5g070830 74.211 190 47 1 49 238 229 416 5.19e-86 268
MsG0080047884.01.T01 MTR_6g084770 54.128 218 93 5 22 237 94 306 2.70e-67 216
MsG0080047884.01.T01 MTR_5g070980 69.173 133 39 1 29 161 99 229 1.82e-50 165
MsG0080047884.01.T01 MTR_8g104080 53.793 145 63 2 20 164 91 231 5.85e-47 158
MsG0080047884.01.T01 MTR_2g065360 37.674 215 121 5 29 238 69 275 1.30e-39 143
MsG0080047884.01.T01 MTR_6g084910 52.459 122 56 1 43 164 1 120 7.49e-38 129
MsG0080047884.01.T01 MTR_8g091690 38.028 213 118 6 29 237 90 292 1.29e-37 137
MsG0080047884.01.T01 MTR_6g084760 58.000 100 39 2 43 142 1 97 1.59e-30 110
MsG0080047884.01.T01 MTR_5g021390 33.333 213 131 5 32 238 109 316 3.68e-27 109
MsG0080047884.01.T01 MTR_3g058000 30.396 227 140 7 17 236 91 306 5.75e-27 108
MsG0080047884.01.T01 MTR_3g058060 33.178 214 128 6 29 236 101 305 6.39e-27 109
MsG0080047884.01.T01 MTR_3g058230 32.857 210 125 6 32 236 31 229 1.83e-25 104
MsG0080047884.01.T01 MTR_8g076290 33.036 224 136 7 22 238 92 308 2.91e-25 104
MsG0080047884.01.T01 MTR_3g058210 33.333 213 123 7 32 236 103 304 2.38e-24 101
MsG0080047884.01.T01 MTR_3g058240 32.864 213 124 7 32 236 67 268 2.89e-24 101
MsG0080047884.01.T01 MTR_3g058400 32.857 210 123 8 34 236 105 303 3.43e-24 101
MsG0080047884.01.T01 MTR_4g089020 31.982 222 134 7 20 236 85 294 3.97e-24 100
MsG0080047884.01.T01 MTR_3g058250 30.986 213 128 7 32 236 101 302 6.79e-24 100
MsG0080047884.01.T01 MTR_3g058390 30.516 213 129 7 32 236 101 302 8.35e-24 100
MsG0080047884.01.T01 MTR_0171s0030 29.612 206 127 5 43 238 25 222 9.17e-24 99.4
MsG0080047884.01.T01 MTR_3g057980 30.180 222 130 6 22 236 94 297 1.03e-23 99.8
MsG0080047884.01.T01 MTR_3g057900 32.727 220 115 7 29 236 99 297 1.15e-23 99.8
MsG0080047884.01.T01 MTR_7g092620 29.878 164 107 3 32 190 99 259 2.01e-23 99.0
MsG0080047884.01.T01 MTR_8g020940 28.000 225 142 7 22 237 93 306 2.02e-23 99.0
MsG0080047884.01.T01 MTR_3g057970 31.776 214 122 6 29 236 96 291 4.27e-23 97.8
MsG0080047884.01.T01 MTR_3g058380 31.429 210 126 8 34 236 24 222 8.87e-23 96.7
MsG0080047884.01.T01 MTR_3g057800 29.187 209 135 5 32 236 101 300 1.81e-22 96.3
MsG0080047884.01.T01 MTR_3g025260 28.384 229 144 6 20 238 87 305 2.66e-22 95.9
MsG0080047884.01.T01 MTR_4g104540 28.302 212 139 6 32 238 31 234 4.03e-22 94.7
MsG0080047884.01.T01 MTR_0638s0020 36.667 150 85 4 94 238 88 232 5.81e-22 94.4
MsG0080047884.01.T01 MTR_5g018480 29.319 191 120 4 32 209 107 295 7.95e-22 92.8
MsG0080047884.01.T01 MTR_5g018980 28.837 215 132 6 32 235 102 306 2.11e-21 93.2
MsG0080047884.01.T01 MTR_0171s0020 27.670 206 131 5 43 238 113 310 2.81e-21 92.8
MsG0080047884.01.T01 MTR_3g057910 29.018 224 140 8 20 236 93 304 3.21e-21 92.8
MsG0080047884.01.T01 MTR_8g468780 27.876 226 145 7 22 238 23 239 3.40e-21 92.4
MsG0080047884.01.T01 MTR_8g020950 26.977 215 139 6 32 237 103 308 3.76e-21 92.4
MsG0080047884.01.T01 MTR_1g442730 29.302 215 135 7 29 236 97 301 4.31e-21 92.4
MsG0080047884.01.T01 MTR_5g019010 25.234 214 144 5 32 238 102 306 7.91e-21 91.7
MsG0080047884.01.T01 MTR_4g026050 27.830 212 141 4 32 238 95 299 8.27e-21 91.3
MsG0080047884.01.T01 MTR_3g058220 30.189 212 130 8 32 236 102 302 1.10e-20 91.3
MsG0080047884.01.T01 MTR_6g039630 29.697 165 107 4 29 190 97 255 1.27e-20 88.6
MsG0080047884.01.T01 MTR_1g035190 30.093 216 134 7 29 237 83 288 1.44e-20 90.9
MsG0080047884.01.T01 MTR_4g025950 26.702 191 132 3 32 216 95 283 1.47e-20 89.0
MsG0080047884.01.T01 MTR_5g094570 28.365 208 135 7 34 238 107 303 1.64e-20 90.5
MsG0080047884.01.T01 MTR_3g076530 28.571 224 135 9 22 236 97 304 1.70e-20 90.5
MsG0080047884.01.T01 MTR_8g466180 28.700 223 139 8 22 236 92 302 1.71e-20 90.5
MsG0080047884.01.T01 MTR_5g073250 32.367 207 124 7 34 236 107 301 1.91e-20 90.5
MsG0080047884.01.T01 MTR_4g071710 26.577 222 141 6 32 238 102 316 2.85e-20 90.1
MsG0080047884.01.T01 MTR_5g045770 25.472 212 146 4 32 238 95 299 3.02e-20 89.7
MsG0080047884.01.T01 MTR_4g104550 28.440 218 136 6 29 238 90 295 3.57e-20 89.7
MsG0080047884.01.T01 MTR_4g104610 27.523 218 137 6 32 236 93 302 5.46e-20 89.0
MsG0080047884.01.T01 MTR_3g020780 29.817 218 130 6 33 236 101 309 6.43e-20 89.0
MsG0080047884.01.T01 MTR_4g025970 25.822 213 145 4 32 238 95 300 7.44e-20 88.6
MsG0080047884.01.T01 MTR_0059s0170 31.222 221 134 8 22 236 95 303 9.02e-20 88.6
MsG0080047884.01.T01 MTR_4g089025 29.680 219 134 8 29 238 114 321 9.57e-20 88.6
MsG0080047884.01.T01 MTR_7g012330 26.512 215 141 6 32 238 100 305 1.15e-19 88.2
MsG0080047884.01.T01 MTR_3g436390 27.273 209 137 6 33 236 102 300 1.19e-19 88.2
MsG0080047884.01.T01 MTR_4g104640 29.204 226 145 6 19 238 104 320 2.50e-19 87.4
MsG0080047884.01.T01 MTR_5g094660 30.097 206 133 5 34 238 107 302 3.39e-19 86.7
MsG0080047884.01.T01 MTR_1g035140 28.972 214 137 7 29 237 100 303 3.76e-19 86.7
MsG0080047884.01.T01 MTR_5g018990 25.701 214 143 6 32 238 103 307 3.99e-19 86.7
MsG0080047884.01.T01 MTR_0181s0030 28.571 217 134 6 32 238 99 304 6.54e-19 85.9
MsG0080047884.01.T01 MTR_3g024520 28.947 228 140 6 20 236 87 303 7.46e-19 85.9
MsG0080047884.01.T01 MTR_3g025230 28.947 228 140 6 20 236 87 303 8.44e-19 85.5
MsG0080047884.01.T01 MTR_8g104030 53.947 76 33 1 164 237 7 82 9.08e-19 84.0
MsG0080047884.01.T01 MTR_6g462640 26.887 212 136 6 33 236 102 302 1.13e-18 85.1
MsG0080047884.01.T01 MTR_4g048580 28.708 209 139 5 29 236 102 301 1.14e-18 85.1
MsG0080047884.01.T01 MTR_7g056103 27.570 214 142 4 32 238 99 306 1.17e-18 85.1
MsG0080047884.01.T01 MTR_4g109470 27.876 226 143 8 20 236 86 300 1.26e-18 85.1
MsG0080047884.01.T01 MTR_7g012860 26.512 215 141 6 32 238 99 304 1.37e-18 85.1
MsG0080047884.01.T01 MTR_0287s0060 26.512 215 141 6 32 238 99 304 1.37e-18 85.1
MsG0080047884.01.T01 MTR_7g087520 28.311 219 136 6 32 237 102 312 1.69e-18 84.7
MsG0080047884.01.T01 MTR_4g089055 29.464 224 137 8 22 238 109 318 1.73e-18 84.7
MsG0080047884.01.T01 MTR_0022s0290 27.928 222 139 7 29 236 103 317 2.36e-18 84.3
MsG0080047884.01.T01 MTR_3g057860 28.302 212 135 7 32 236 102 303 2.38e-18 84.3
MsG0080047884.01.T01 MTR_4g025980 26.887 212 142 5 32 238 96 299 2.60e-18 84.3
MsG0080047884.01.T01 MTR_5g094520 29.060 234 148 7 6 236 9 227 3.75e-18 83.6
MsG0080047884.01.T01 MTR_3g436540 27.488 211 139 4 32 236 105 307 4.88e-18 83.6
MsG0080047884.01.T01 MTR_5g094520 30.288 208 131 6 32 236 136 332 5.50e-18 83.2
MsG0080047884.01.T01 MTR_3g058110 27.315 216 139 6 29 236 101 306 5.59e-18 83.2
MsG0080047884.01.T01 MTR_4g133750 26.923 208 133 6 34 236 107 300 6.36e-18 83.2
MsG0080047884.01.T01 MTR_8g469300 26.549 226 148 7 22 238 92 308 7.16e-18 82.8
MsG0080047884.01.T01 MTR_5g094550 28.846 208 134 6 34 238 107 303 7.18e-18 82.8
MsG0080047884.01.T01 MTR_4g062510 26.222 225 144 4 26 235 96 313 8.40e-18 82.8
MsG0080047884.01.T01 MTR_5g094840 28.571 210 137 6 32 238 110 309 1.06e-17 82.4
MsG0080047884.01.T01 MTR_5g073320 29.851 201 125 7 40 236 114 302 1.19e-17 82.4
MsG0080047884.01.T01 MTR_1g023730 28.986 207 126 5 20 209 88 290 1.94e-17 81.6
MsG0080047884.01.T01 MTR_2g450040 27.692 195 127 5 29 211 103 295 3.74e-17 80.9
MsG0080047884.01.T01 MTR_5g094560 26.695 236 155 7 6 238 83 303 7.66e-17 80.1
MsG0080047884.01.T01 MTR_1g107305 27.363 201 125 4 26 209 97 293 8.32e-17 79.3
MsG0080047884.01.T01 MTR_2g010530 29.341 167 109 4 32 195 100 260 1.09e-16 79.3
MsG0080047884.01.T01 MTR_4g089030 28.241 216 140 7 29 236 110 318 1.32e-16 79.3
MsG0080047884.01.T01 MTR_1g107295 26.667 225 143 5 26 235 97 314 1.40e-16 79.3
MsG0080047884.01.T01 MTR_8g036185 25.664 226 148 6 26 238 94 312 1.91e-16 79.0
MsG0080047884.01.T01 MTR_4g088425 27.807 187 113 6 32 208 106 280 3.19e-16 78.2
MsG0080047884.01.T01 MTR_6g035115 28.902 173 114 4 26 195 97 263 3.57e-16 77.8
MsG0080047884.01.T01 MTR_5g095260 27.982 218 139 7 26 238 101 305 4.16e-16 77.8
MsG0080047884.01.T01 MTR_0554s0020 28.834 163 107 4 32 191 103 259 5.00e-16 77.4
MsG0080047884.01.T01 MTR_8g020960 23.529 221 151 6 26 237 96 307 5.28e-16 77.4
MsG0080047884.01.T01 MTR_4g062500 26.667 225 141 5 26 235 94 309 6.28e-16 77.4
MsG0080047884.01.T01 MTR_4g102310 25.701 214 143 6 32 238 104 308 6.59e-16 77.0
MsG0080047884.01.T01 MTR_8g012585 28.272 191 122 4 32 209 39 227 1.00e-15 76.6
MsG0080047884.01.T01 MTR_5g094540 26.496 234 154 7 6 236 83 301 1.05e-15 76.6
MsG0080047884.01.T01 MTR_5g095290 27.619 210 133 7 34 238 109 304 1.06e-15 76.6
MsG0080047884.01.T01 MTR_5g023680 27.488 211 141 4 33 238 72 275 1.18e-15 76.3
MsG0080047884.01.T01 MTR_8g012590 27.624 181 121 5 32 209 105 278 1.52e-15 76.3
MsG0080047884.01.T01 MTR_4g102280 25.110 227 151 7 20 238 99 314 1.62e-15 75.9
MsG0080047884.01.T01 MTR_4g026200 25.701 214 147 4 30 238 93 299 1.83e-15 75.9
MsG0080047884.01.T01 MTR_0171s0010 24.286 210 139 5 41 238 111 312 2.55e-15 75.5
MsG0080047884.01.T01 MTR_4g088400 25.926 189 124 4 32 208 113 297 2.78e-15 75.5
MsG0080047884.01.T01 MTR_1g023720 27.536 207 129 5 20 209 88 290 4.55e-15 74.7
MsG0080047884.01.T01 MTR_2g437840 28.090 178 114 4 32 197 96 271 5.35e-15 74.3
MsG0080047884.01.T01 MTR_8g104100 55.556 63 26 1 177 237 1 63 6.55e-15 72.8
MsG0080047884.01.T01 MTR_4g062530 29.167 192 120 5 50 236 117 297 7.08e-15 73.9
MsG0080047884.01.T01 MTR_6g084900 54.412 68 29 2 171 237 2 68 9.45e-15 72.4
MsG0080047884.01.T01 MTR_5g073230 26.425 193 119 5 47 238 122 292 1.10e-14 73.6
MsG0080047884.01.T01 MTR_6g035100 24.510 204 142 5 34 236 105 297 1.28e-14 73.6
MsG0080047884.01.T01 MTR_1g023700 26.271 236 148 6 20 238 89 315 2.92e-14 72.4
MsG0080047884.01.T01 MTR_6g008500 27.358 212 119 7 29 207 101 310 2.99e-14 72.4
MsG0080047884.01.T01 MTR_6g034965 24.510 204 142 6 34 236 105 297 4.46e-14 71.6
MsG0080047884.01.T01 MTR_1g097220 26.486 185 127 4 32 210 128 309 4.82e-14 71.6
MsG0080047884.01.T01 MTR_4g026070 28.261 184 125 3 32 210 95 276 8.08e-14 70.1
MsG0080047884.01.T01 MTR_4g018800 26.794 209 122 7 26 209 100 302 9.84e-14 70.9
MsG0080047884.01.T01 MTR_3g076560 26.180 233 148 9 16 238 100 318 2.41e-13 69.7
MsG0080047884.01.T01 MTR_6g008620 25.123 203 125 5 29 209 105 302 2.50e-13 69.7
MsG0080047884.01.T01 MTR_6g008600 25.743 202 126 6 30 209 105 304 2.58e-13 69.7
MsG0080047884.01.T01 MTR_7g027960 27.041 196 123 5 50 236 114 298 6.85e-13 68.2
MsG0080047884.01.T01 MTR_6g008530 25.490 204 127 6 29 209 105 306 9.02e-13 67.8
MsG0080047884.01.T01 MTR_5g045250 26.728 217 132 9 32 238 123 322 1.69e-12 67.0
MsG0080047884.01.T01 MTR_8g027040 28.497 193 121 8 25 210 145 327 2.11e-12 67.0
MsG0080047884.01.T01 MTR_7g028020 26.531 196 124 5 50 236 114 298 2.57e-12 66.6
MsG0080047884.01.T01 MTR_1g103680 23.784 185 130 4 32 209 100 280 3.28e-12 66.2
MsG0080047884.01.T01 MTR_1g097240 25.229 218 142 6 32 238 92 299 4.01e-12 65.9
MsG0080047884.01.T01 MTR_1g031700 24.324 185 129 4 32 209 99 279 6.52e-12 65.5
MsG0080047884.01.T01 MTR_1g103670 25.000 188 130 4 32 212 99 282 7.36e-12 65.1
MsG0080047884.01.T01 MTR_6g042540 26.496 234 132 7 26 238 95 309 7.59e-12 65.1
MsG0080047884.01.T01 MTR_7g092600 26.761 213 141 5 32 238 104 307 1.18e-11 64.7
MsG0080047884.01.T01 MTR_4g094772 27.811 169 116 4 20 187 89 252 1.96e-11 63.9
MsG0080047884.01.T01 MTR_5g016410 24.419 172 117 4 29 189 94 263 2.08e-11 63.9
MsG0080047884.01.T01 MTR_3g014880 24.138 203 130 4 29 209 103 303 2.34e-11 63.9
MsG0080047884.01.T01 MTR_6g042610 26.633 199 119 7 32 208 101 294 2.85e-11 63.5
MsG0080047884.01.T01 MTR_6g008650 26.442 208 118 7 29 209 103 302 3.05e-11 63.5
MsG0080047884.01.T01 MTR_2g437880 23.034 178 117 4 29 190 94 267 5.10e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047884.01.T01 AT3G48310 33.014 209 124 6 32 238 97 291 2.46e-28 112
MsG0080047884.01.T01 AT3G48320 33.810 210 121 7 32 238 97 291 3.59e-28 112
MsG0080047884.01.T01 AT2G30770 33.032 221 131 8 22 238 90 297 3.68e-26 106
MsG0080047884.01.T01 AT4G13310 29.630 216 136 6 29 238 94 299 1.02e-23 99.0
MsG0080047884.01.T01 AT4G13310 29.630 216 136 6 29 238 94 299 2.28e-23 99.0
MsG0080047884.01.T01 AT3G48290 29.665 209 131 6 32 238 98 292 3.37e-23 98.2
MsG0080047884.01.T01 AT2G30750 33.784 222 128 7 22 238 90 297 5.16e-23 97.8
MsG0080047884.01.T01 AT3G48300 30.144 209 130 7 32 238 94 288 1.20e-22 96.7
MsG0080047884.01.T01 AT3G48300 30.144 209 130 7 32 238 96 290 1.21e-22 96.7
MsG0080047884.01.T01 AT5G24950 28.505 214 139 5 29 238 94 297 1.99e-22 96.3
MsG0080047884.01.T01 AT3G48290 29.756 205 128 6 32 234 98 288 5.23e-22 95.1
MsG0080047884.01.T01 AT3G48280 28.846 208 135 6 32 238 95 290 5.71e-22 94.7
MsG0080047884.01.T01 AT4G36220 33.333 159 98 5 32 188 105 257 6.15e-22 94.7
MsG0080047884.01.T01 AT3G48270 29.665 209 131 7 32 238 96 290 7.24e-22 94.4
MsG0080047884.01.T01 AT1G11610 30.317 221 137 7 22 238 90 297 1.73e-21 93.6
MsG0080047884.01.T01 AT1G11610 30.317 221 137 7 22 238 90 297 2.07e-21 93.2
MsG0080047884.01.T01 AT5G42590 28.972 214 133 7 32 238 97 298 2.11e-20 90.5
MsG0080047884.01.T01 AT1G01280 28.571 217 136 5 32 237 97 305 3.49e-20 89.7
MsG0080047884.01.T01 AT5G07990 29.279 222 142 8 20 236 88 299 4.29e-20 89.4
MsG0080047884.01.T01 AT4G13290 27.315 216 133 6 29 238 95 292 1.52e-19 87.8
MsG0080047884.01.T01 AT5G24960 29.767 215 135 7 29 238 95 298 2.42e-19 86.7
MsG0080047884.01.T01 AT5G24960 29.767 215 135 7 29 238 95 298 4.73e-19 86.3
MsG0080047884.01.T01 AT4G12330 26.570 207 137 2 39 238 118 316 5.36e-19 86.3
MsG0080047884.01.T01 AT1G13080 29.279 222 140 6 26 238 90 303 2.03e-18 84.7
MsG0080047884.01.T01 AT4G31970 28.141 199 123 5 32 212 100 296 3.04e-18 84.0
MsG0080047884.01.T01 AT4G31500 28.638 213 137 7 32 238 95 298 4.44e-18 83.6
MsG0080047884.01.T01 AT5G04330 28.821 229 140 9 21 238 90 306 4.63e-18 83.6
MsG0080047884.01.T01 AT3G26290 27.313 227 145 7 20 238 99 313 6.97e-18 83.2
MsG0080047884.01.T01 AT3G26290 27.313 227 145 7 20 238 86 300 7.02e-18 83.2
MsG0080047884.01.T01 AT3G26310 27.523 218 140 7 29 238 92 299 1.12e-17 82.4
MsG0080047884.01.T01 AT3G26320 28.636 220 135 8 29 238 93 300 1.31e-17 82.4
MsG0080047884.01.T01 AT3G26150 27.753 227 144 8 22 238 87 303 4.64e-17 80.5
MsG0080047884.01.T01 AT4G20235 27.660 188 112 4 2 188 70 234 5.15e-17 79.7
MsG0080047884.01.T01 AT5G44620 26.108 203 130 5 46 238 125 317 2.27e-16 78.6
MsG0080047884.01.T01 AT3G26330 27.632 228 143 8 20 238 86 300 9.21e-16 76.6
MsG0080047884.01.T01 AT5G57260 25.688 218 145 6 29 238 92 300 1.96e-15 75.9
MsG0080047884.01.T01 AT4G20240 28.926 242 143 8 1 236 78 296 2.19e-15 75.5
MsG0080047884.01.T01 AT3G61880 27.103 214 133 7 32 238 132 329 2.96e-15 75.5
MsG0080047884.01.T01 AT4G20240 28.926 242 143 8 1 236 78 296 3.07e-15 75.1
MsG0080047884.01.T01 AT5G06900 26.027 219 144 6 26 236 93 301 3.81e-15 75.1
MsG0080047884.01.T01 AT3G61880 27.103 214 133 7 32 238 132 329 3.88e-15 75.1
MsG0080047884.01.T01 AT3G26300 26.957 230 142 8 20 238 86 300 3.96e-15 75.1
MsG0080047884.01.T01 AT4G22690 24.623 199 136 4 46 238 164 354 5.46e-15 74.7
MsG0080047884.01.T01 AT4G22710 24.623 199 136 4 46 238 133 323 5.61e-15 74.7
MsG0080047884.01.T01 AT4G12300 26.131 199 135 4 46 238 121 313 9.22e-15 73.9
MsG0080047884.01.T01 AT4G13770 25.352 213 144 7 32 238 96 299 1.19e-14 73.6
MsG0080047884.01.T01 AT2G02580 26.606 218 142 7 29 238 93 300 1.65e-14 73.2
MsG0080047884.01.T01 AT5G25140 28.218 202 129 6 43 238 105 296 1.72e-14 73.2
MsG0080047884.01.T01 AT3G20940 30.841 214 133 7 31 238 107 311 2.00e-14 72.8
MsG0080047884.01.T01 AT1G13110 26.702 191 130 5 26 209 91 278 2.28e-14 72.8
MsG0080047884.01.T01 AT4G31940 24.500 200 130 4 32 212 100 297 2.51e-14 72.8
MsG0080047884.01.T01 AT2G24180 27.803 223 146 7 22 238 93 306 2.72e-14 72.4
MsG0080047884.01.T01 AT3G26160 28.634 227 142 9 22 238 87 303 4.60e-14 71.6
MsG0080047884.01.T01 AT2G40890 24.390 205 134 6 22 212 84 281 4.67e-14 71.6
MsG0080047884.01.T01 AT4G12320 26.961 204 135 5 43 238 118 315 5.59e-14 71.6
MsG0080047884.01.T01 AT2G46660 27.189 217 125 8 32 238 136 329 1.09e-13 70.9
MsG0080047884.01.T01 AT4G31950 26.562 192 116 6 40 212 100 285 1.64e-13 70.1
MsG0080047884.01.T01 AT3G53280 24.664 223 153 7 22 238 85 298 3.06e-13 69.3
MsG0080047884.01.T01 AT5G09970 30.387 181 95 8 47 209 149 316 8.30e-13 68.2
MsG0080047884.01.T01 AT3G25180 25.000 216 152 5 26 234 100 312 9.44e-13 67.8
MsG0080047884.01.T01 AT5G25130 30.247 162 104 4 33 188 95 253 9.90e-13 67.8
MsG0080047884.01.T01 AT5G25180 27.358 212 138 6 33 238 95 296 1.03e-12 67.8
MsG0080047884.01.T01 AT1G13710 25.417 240 136 10 27 238 93 317 1.15e-12 67.8
MsG0080047884.01.T01 AT3G44250 26.941 219 142 8 29 238 90 299 1.15e-12 67.8
MsG0080047884.01.T01 AT5G35715 29.651 172 109 5 26 188 25 193 1.37e-12 67.4
MsG0080047884.01.T01 AT4G12310 26.961 204 135 5 43 238 120 317 1.81e-12 67.0
MsG0080047884.01.T01 AT3G25180 25.000 216 152 5 26 234 100 312 2.33e-12 66.6
MsG0080047884.01.T01 AT3G26200 26.842 190 125 6 29 209 90 274 3.47e-12 66.2
MsG0080047884.01.T01 AT2G42250 26.415 212 143 5 32 238 106 309 8.43e-12 65.1
MsG0080047884.01.T01 AT1G74110 24.352 193 127 5 32 209 130 318 5.45e-11 62.8

Find 38 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTGAGTATGGTCCTTAT+TGG 0.239224 contig133end:+15986 MsG0080047883.01.T01:CDS
GCTAGGAGCATTTGATATTC+AGG 0.249787 contig133end:+16302 MsG0080047883.01.T01:CDS
AAAGCAAGAGTTGGATGTTT+TGG 0.267848 contig133end:+16086 MsG0080047883.01.T01:CDS
AGCTCAGATCCTTGAGTCTT+TGG 0.286174 contig133end:-15934 MsG0080047883.01.T01:intergenic
TCCAACTCTTGCTTTCTAAT+AGG 0.315063 contig133end:-16078 MsG0080047883.01.T01:intergenic
CATTGATCGACCAAACATTA+AGG 0.323977 contig133end:+16624 MsG0080047883.01.T01:CDS
AGTAAAATTGCCTTAATGTT+TGG 0.328799 contig133end:-16634 MsG0080047883.01.T01:intergenic
GAAGATGAAATGATAATAGT+TGG 0.344929 contig133end:-15867 MsG0080047883.01.T01:intergenic
TTTCTGACGCTATGCCAATA+AGG 0.356351 contig133end:-16000 MsG0080047883.01.T01:intergenic
ATCTTTGATGAAAGCTGCTT+TGG 0.368782 contig133end:+16113 MsG0080047883.01.T01:CDS
CATCTGCTACCGCGATTGAA+TGG 0.374942 contig133end:+16685 MsG0080047883.01.T01:CDS
GATTCAAAAGTTGAGATGTT+TGG 0.407372 contig133end:+16054 MsG0080047883.01.T01:CDS
ATCTAGCTGATTATGTTCCT+TGG 0.420213 contig133end:+16280 MsG0080047883.01.T01:CDS
ATCTGCTACCGCGATTGAAT+GGG 0.439324 contig133end:+16686 MsG0080047883.01.T01:CDS
TGGAACTTGACCAAGTTGTA+AGG 0.454316 contig133end:-15847 MsG0080047883.01.T01:intergenic
GCTGATTATGTTCCTTGGCT+AGG 0.468676 contig133end:+16285 MsG0080047883.01.T01:CDS
GCAATTTGACTTGAAGAAGT+TGG 0.470536 contig133end:+16224 MsG0080047883.01.T01:CDS
GTCAAATGGTGCAAAGGGAT+TGG 0.470904 contig133end:+15960 MsG0080047883.01.T01:CDS
CTCATGTCAAATGGTGCAAA+GGG 0.473292 contig133end:+15955 MsG0080047883.01.T01:CDS
CAAGAAGGAGTGGCTTTGAC+AGG 0.474314 contig133end:+16249 MsG0080047883.01.T01:CDS
CAGATCCTTGAGTCTTTGGT+CGG 0.486573 contig133end:-15930 MsG0080047883.01.T01:intergenic
ATTAGTTGTTTGTTCATGCT+CGG 0.487405 contig133end:-16512 MsG0080047883.01.T01:intergenic
GGATCTGAGCTCATGTCAAA+TGG 0.507441 contig133end:+15946 MsG0080047883.01.T01:CDS
TTGAAGAAGTTGGTTCAAGA+AGG 0.515737 contig133end:+16234 MsG0080047883.01.T01:CDS
TCCTATTAGAAAGCAAGAGT+TGG 0.542429 contig133end:+16077 MsG0080047883.01.T01:CDS
GCAATCATGTCCTTACAACT+TGG 0.554771 contig133end:+15837 MsG0080047883.01.T01:intron
GGCTGTACAAAATCTTATAG+AGG 0.565105 contig133end:+16161 MsG0080047883.01.T01:CDS
TCAATTAAGCACCAAACCAT+AGG 0.570863 contig133end:+16577 MsG0080047883.01.T01:CDS
AACAAGTAAATCACTTGATG+AGG 0.576535 contig133end:+16471 MsG0080047883.01.T01:CDS
TGTATAAGATGATACTCGGT+AGG 0.579037 contig133end:+16190 MsG0080047883.01.T01:CDS
GCTCATGTCAAATGGTGCAA+AGG 0.591133 contig133end:+15954 MsG0080047883.01.T01:CDS
ATATCAAATGCTCCTAGCCA+AGG 0.600570 contig133end:-16297 MsG0080047883.01.T01:intergenic
GAAGTTGGTTCAAGAAGGAG+TGG 0.602882 contig133end:+16239 MsG0080047883.01.T01:CDS
TTGATGAAAGCTGCTTTGGT+AGG 0.608318 contig133end:+16117 MsG0080047883.01.T01:CDS
TCAAGCCGACCAAAGACTCA+AGG 0.640727 contig133end:+15925 MsG0080047883.01.T01:CDS
AATATGTATAAGATGATACT+CGG 0.646466 contig133end:+16186 MsG0080047883.01.T01:CDS
TGAAGTTGTGAATGTTAGTG+AGG 0.659113 contig133end:+16140 MsG0080047883.01.T01:CDS
AGATAAAGCCCATTCAATCG+CGG 0.715698 contig133end:-16694 MsG0080047883.01.T01:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGTATAAGATGATACT+CGG + contig133end:16186-16205 MsG0080047883.01.T01:CDS 20.0%
!! ATTAATTTAACTCTCTGTTA+GGG + contig133end:16427-16446 MsG0080047883.01.T01:intron 20.0%
!! TATTAATTTAACTCTCTGTT+AGG + contig133end:16426-16445 MsG0080047883.01.T01:intron 20.0%
! AGTAAAATTGCCTTAATGTT+TGG - contig133end:16637-16656 MsG0080047883.01.T01:intergenic 25.0%
! GAAGATGAAATGATAATAGT+TGG - contig133end:15870-15889 MsG0080047883.01.T01:intergenic 25.0%
!! TTTTACTAGACATGGTTATA+TGG + contig133end:16650-16669 MsG0080047883.01.T01:CDS 25.0%
!!! ACATGTTTCTGTTCATTTTT+TGG - contig133end:16604-16623 MsG0080047883.01.T01:intergenic 25.0%
AACAAGTAAATCACTTGATG+AGG + contig133end:16471-16490 MsG0080047883.01.T01:CDS 30.0%
ATTAGTTGTTTGTTCATGCT+CGG - contig133end:16515-16534 MsG0080047883.01.T01:intergenic 30.0%
GATTCAAAAGTTGAGATGTT+TGG + contig133end:16054-16073 MsG0080047883.01.T01:CDS 30.0%
! TAAGGCAATTTTACTAGACA+TGG + contig133end:16642-16661 MsG0080047883.01.T01:CDS 30.0%
ATCTAGCTGATTATGTTCCT+TGG + contig133end:16280-16299 MsG0080047883.01.T01:CDS 35.0%
ATCTTTGATGAAAGCTGCTT+TGG + contig133end:16113-16132 MsG0080047883.01.T01:CDS 35.0%
CATTGATCGACCAAACATTA+AGG + contig133end:16624-16643 MsG0080047883.01.T01:CDS 35.0%
GGCTGTACAAAATCTTATAG+AGG + contig133end:16161-16180 MsG0080047883.01.T01:CDS 35.0%
TCAATTAAGCACCAAACCAT+AGG + contig133end:16577-16596 MsG0080047883.01.T01:CDS 35.0%
TCCAACTCTTGCTTTCTAAT+AGG - contig133end:16081-16100 MsG0080047883.01.T01:intergenic 35.0%
TCCTATTAGAAAGCAAGAGT+TGG + contig133end:16077-16096 MsG0080047883.01.T01:CDS 35.0%
TGAAGTTGTGAATGTTAGTG+AGG + contig133end:16140-16159 MsG0080047883.01.T01:CDS 35.0%
TGTATAAGATGATACTCGGT+AGG + contig133end:16190-16209 MsG0080047883.01.T01:CDS 35.0%
TTTCTGAGTATGGTCCTTAT+TGG + contig133end:15986-16005 MsG0080047883.01.T01:CDS 35.0%
! AAAGCAAGAGTTGGATGTTT+TGG + contig133end:16086-16105 MsG0080047883.01.T01:CDS 35.0%
! CTACGAAGCAAACTTTTGAT+TGG + contig133end:16371-16390 MsG0080047883.01.T01:intron 35.0%
! TTGAAGAAGTTGGTTCAAGA+AGG + contig133end:16234-16253 MsG0080047883.01.T01:CDS 35.0%
!! GCAATTTGACTTGAAGAAGT+TGG + contig133end:16224-16243 MsG0080047883.01.T01:CDS 35.0%
!!! CATTTTTTGGACCTATGGTT+TGG - contig133end:16591-16610 MsG0080047883.01.T01:intergenic 35.0%
!!! CTGTTCATTTTTTGGACCTA+TGG - contig133end:16596-16615 MsG0080047883.01.T01:intergenic 35.0%
AGATAAAGCCCATTCAATCG+CGG - contig133end:16697-16716 MsG0080047883.01.T01:intergenic 40.0%
ATATCAAATGCTCCTAGCCA+AGG - contig133end:16300-16319 MsG0080047883.01.T01:intergenic 40.0%
CTCATGTCAAATGGTGCAAA+GGG + contig133end:15955-15974 MsG0080047883.01.T01:CDS 40.0%
GCAATCATGTCCTTACAACT+TGG + contig133end:15837-15856 MsG0080047883.01.T01:intron 40.0%
TGGAACTTGACCAAGTTGTA+AGG - contig133end:15850-15869 MsG0080047883.01.T01:intergenic 40.0%
TTTCTGACGCTATGCCAATA+AGG - contig133end:16003-16022 MsG0080047883.01.T01:intergenic 40.0%
! GCTTGATGTCATGAGTTTTG+AGG - contig133end:15911-15930 MsG0080047883.01.T01:intergenic 40.0%
! TTGATGAAAGCTGCTTTGGT+AGG + contig133end:16117-16136 MsG0080047883.01.T01:CDS 40.0%
!! GCTAGGAGCATTTGATATTC+AGG + contig133end:16302-16321 MsG0080047883.01.T01:CDS 40.0%
!!! GGATTGGCTTTTTCTGAGTA+TGG + contig133end:15976-15995 MsG0080047883.01.T01:CDS 40.0%
AGCTCAGATCCTTGAGTCTT+TGG - contig133end:15937-15956 MsG0080047883.01.T01:intergenic 45.0%
ATCTGCTACCGCGATTGAAT+GGG + contig133end:16686-16705 MsG0080047883.01.T01:CDS 45.0%
CAGATCCTTGAGTCTTTGGT+CGG - contig133end:15933-15952 MsG0080047883.01.T01:intergenic 45.0%
GCTCATGTCAAATGGTGCAA+AGG + contig133end:15954-15973 MsG0080047883.01.T01:CDS 45.0%
GCTGATTATGTTCCTTGGCT+AGG + contig133end:16285-16304 MsG0080047883.01.T01:CDS 45.0%
GGATCTGAGCTCATGTCAAA+TGG + contig133end:15946-15965 MsG0080047883.01.T01:CDS 45.0%
GTCAAATGGTGCAAAGGGAT+TGG + contig133end:15960-15979 MsG0080047883.01.T01:CDS 45.0%
! GAAGTTGGTTCAAGAAGGAG+TGG + contig133end:16239-16258 MsG0080047883.01.T01:CDS 45.0%
CATCTGCTACCGCGATTGAA+TGG + contig133end:16685-16704 MsG0080047883.01.T01:CDS 50.0%
TCAAGCCGACCAAAGACTCA+AGG + contig133end:15925-15944 MsG0080047883.01.T01:CDS 50.0%
!! CAAGAAGGAGTGGCTTTGAC+AGG + contig133end:16249-16268 MsG0080047883.01.T01:CDS 50.0%
Chromosome Type Strat End Strand Name
contig133end gene 15832 16726 15832 ID=MsG0080047884.01;Name=MsG0080047884.01
contig133end mRNA 15832 16726 15832 ID=MsG0080047884.01.T01;Parent=MsG0080047884.01;Name=MsG0080047884.01.T01;_AED=0.50;_eAED=0.53;_QI=0|0|0|1|1|1|2|0|256
contig133end exon 15832 16323 15832 ID=MsG0080047884.01.T01:exon:29238;Parent=MsG0080047884.01.T01
contig133end exon 16448 16726 16448 ID=MsG0080047884.01.T01:exon:29237;Parent=MsG0080047884.01.T01
contig133end CDS 15832 16323 15832 ID=MsG0080047884.01.T01:cds;Parent=MsG0080047884.01.T01
contig133end CDS 16448 16726 16448 ID=MsG0080047884.01.T01:cds;Parent=MsG0080047884.01.T01
Gene Sequence

>MsG0080047884.01.T01

ATGGTGCAATCATGTCCTTACAACTTGGTCAAGTTCCAACTATTATCATTTCATCTTCAAAAGCTGCAGAATCATTCCTCAAAACTCATGACATCAAGCCGACCAAAGACTCAAGGATCTGAGCTCATGTCAAATGGTGCAAAGGGATTGGCTTTTTCTGAGTATGGTCCTTATTGGCATAGCGTCAGAAAACTTTGCACTTTAAAACTTCTTAATGTTAATGATTCAAAAGTTGAGATGTTTGGTCCTATTAGAAAGCAAGAGTTGGATGTTTTGGTTAAATCTTTGATGAAAGCTGCTTTGGTAGGTGAAGTTGTGAATGTTAGTGAGGCTGTACAAAATCTTATAGAGGAAAATATGTATAAGATGATACTCGGTAGGAGTAAGTGTGAGCAATTTGACTTGAAGAAGTTGGTTCAAGAAGGAGTGGCTTTGACAGGAGCTTTTAATCTAGCTGATTATGTTCCTTGGCTAGGAGCATTTGATATTCAGGGATTAACACGAGCATGCAAGAAAACAAGTAAATCACTTGATGAGGTGCTGAAGATGATAATAACCGAGCATGAACAAACAACTAATGTAGACAAAACTCATCATGAAGACTTCGTAGACATACTACTCTCAATTAAGCACCAAACCATAGGTCCAAAAAATGAACAGAAACATGTCATTGATCGACCAAACATTAAGGCAATTTTACTAGACATGGTTATATGGCAGCAATTGAAACATCTGCTACCGCGATTGAATGGGCTTTATCTGAACTTTTAA

Protein sequence

>MsG0080047884.01.T01

MVQSCPYNLVKFQLLSFHLQKLQNHSSKLMTSSRPKTQGSELMSNGAKGLAFSEYGPYWHSVRKLCTLKLLNVNDSKVEMFGPIRKQELDVLVKSLMKAALVGEVVNVSEAVQNLIEENMYKMILGRSKCEQFDLKKLVQEGVALTGAFNLADYVPWLGAFDIQGLTRACKKTSKSLDEVLKMIITEHEQTTNVDKTHHEDFVDILLSIKHQTIGPKNEQKHVIDRPNIKAILLDMVIWQQLKHLLPRLNGLYLNF*