AlfalfaGEDB | MsG0080048206.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048206.01

KEGG: -
GO: GO:0004672 GO:0005524 GO:0006468 GO:0030247
PFAM: PF07714 PF13947

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048206.01.T01	XP_013466269.3	83.333	822	72	4	31	850	1	759	0	1350

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048206.01.T01	P93604	50.852	352	165	5	465	810	277	626	1.71E-115	368

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048206.01.T01	A0A072VFE0	83.333	822	72	4	31	850	1	759	0.0	1350

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048203.01	MsG0080048206.01	0.956977	8.201619e-115	2.756147e-109
MsG0080048204.01	MsG0080048206.01	0.847214	1.332376e-59	2.351181e-56
MsG0080048205.01	MsG0080048206.01	0.840009	1.125413e-57	1.582121e-54
MsG0080048206.01	MsG0080048207.01	0.867997	9.057796e-66	3.224842e-62
MsG0080048206.01	MsG0080048208.01	0.916048	2.842376e-85	7.667959e-81
MsG0080048206.01	MsG0580029758.01	0.814078	1.849862e-51	1.229185e-48
MsG0080048206.01	MsG0580029906.01	0.800954	1.130877e-48	5.335347e-46
MsG0080048206.01	MsG0780038930.01	0.841614	4.270893e-58	6.310370e-55
MsG0080048206.01	MsG0880042049.01	0.817821	2.702259e-52	1.988765e-49

Showing 1 to 9 of 9 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0080048206.01.T01	MTR_1g027030	83.333	822	72	4	31	850	1	759	1350
MsG0080048206.01.T01	MTR_1g027140	81.121	821	90	5	31	850	1	757	1336
MsG0080048206.01.T01	MTR_1g027050	80.518	811	103	4	44	850	1	760	1311
MsG0080048206.01.T01	MTR_1g027030	77.616	822	69	5	31	850	1	709	1229
MsG0080048206.01.T01	MTR_1g027070	69.184	821	154	9	31	850	1	723	1127
MsG0080048206.01.T01	MTR_1g027990	45.178	788	320	13	32	816	8	686	634
MsG0080048206.01.T01	MTR_6g045030	71.663	427	107	6	424	842	3	423	610
MsG0080048206.01.T01	MTR_3g028630	67.123	438	98	8	421	850	20	419	566
MsG0080048206.01.T01	MTR_1g028100	68.593	398	112	7	457	850	23	411	553
MsG0080048206.01.T01	MTR_1g028170	64.569	429	141	6	425	850	18	438	551

Showing 1 to 10 of 513 entries

Previous1 2 3 4 5…52Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048206.01.T01	AT5G38250	45.257	369	171	10	448	810	251	594	2.70e-98	320
MsG0080048206.01.T01	AT4G18250	46.512	344	170	7	475	810	309	646	2.37e-97	319
MsG0080048206.01.T01	AT1G66910	43.989	366	188	8	470	827	294	650	2.58e-97	318
MsG0080048206.01.T01	AT1G66910	43.989	366	188	8	470	827	297	653	5.71e-97	317
MsG0080048206.01.T01	AT5G38260	44.904	363	183	7	452	811	260	608	1.32e-96	316
MsG0080048206.01.T01	AT5G38280	46.970	330	160	7	513	837	320	639	2.64e-96	316
MsG0080048206.01.T01	AT5G38280	46.970	330	160	7	513	837	320	639	3.04e-96	315
MsG0080048206.01.T01	AT1G66920	45.970	335	169	6	485	810	261	592	1.08e-95	313
MsG0080048206.01.T01	AT1G66920	45.970	335	169	6	485	810	253	584	1.19e-95	312
MsG0080048206.01.T01	AT1G67000	42.526	388	197	10	468	834	496	878	3.71e-95	318

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 170 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTGGGTAAACTTAA+GGG	0.411661	contig240end:-291862	MsG0080048206.01.T01:CDS
AAACTTAAGGGAAATAGAAA+TGG	0.360564	contig240end:-291850	MsG0080048206.01.T01:CDS
AAAGCTTCGTAGTGGACCTT+TGG	0.439202	contig240end:-291893	MsG0080048206.01.T01:CDS
AAATGTTCATAATTGCTTTG+TGG	0.459245	contig240end:-291204	MsG0080048206.01.T01:CDS
AACAAGTCGAATTCTCAAGG+TGG	0.727769	contig240end:-295324	MsG0080048206.01.T01:CDS
AACCTTCAAATCCCCAGCAA+TGG	0.590851	contig240end:+295290	None:intergenic
AACTTAAGGGAAATAGAAAT+GGG	0.506409	contig240end:-291849	MsG0080048206.01.T01:CDS
AAGAAGGTGGACAATTTGTC+TGG	0.470923	contig240end:+295799	None:intergenic
AAGAATATACGGTGGAGCTG+AGG	0.575260	contig240end:-292199	MsG0080048206.01.T01:CDS
AAGAATGATCCAACAACCTG+TGG	0.661242	contig240end:-295735	MsG0080048206.01.T01:CDS

Showing 1 to 10 of 170 entries

Previous1 2 3 4 5…17Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATACATCACACCAATG+TGG	-	contig240end:295974-295993	MsG0080048206.01.T01:intron	30.0%
AAAGGAGTCATAATACATGA+AGG	+	contig240end:293873-293892	None:intergenic	30.0%
AAGAAGGAAAACAAATCGAA+TGG	-	contig240end:291445-291464	MsG0080048206.01.T01:CDS	30.0%
ACAAAACTTATCCGATAGTT+TGG	+	contig240end:293768-293787	None:intergenic	30.0%
ACAACGAATTGATTGAAGAA+AGG	-	contig240end:296489-296508	MsG0080048206.01.T01:intron	30.0%
ACAATAAAACTGCAGAAAAG+GGG	-	contig240end:295356-295375	MsG0080048206.01.T01:CDS	30.0%
ACATAGGAAATATCTTTGGA+AGG	-	contig240end:295619-295638	MsG0080048206.01.T01:CDS	30.0%
ACTTCATTAAAATTTCTCGC+AGG	-	contig240end:295423-295442	MsG0080048206.01.T01:CDS	30.0%
ACTTGAACAAGATAAACGAA+AGG	-	contig240end:290752-290771	MsG0080048206.01.T01:intron	30.0%
AGAAAGGGAGATAGAAATAT+TGG	-	contig240end:296505-296524	MsG0080048206.01.T01:intron	30.0%

Showing 1 to 10 of 406 entries

Previous1 2 3 4 5…41Next

Chromosome	Type	Strat	End	Strand	Name
contig240end	gene	290687	297103	290687	ID=MsG0080048206.01;Name=MsG0080048206.01
contig240end	mRNA	290687	297103	290687	ID=MsG0080048206.01.T01;Parent=MsG0080048206.01;Name=MsG0080048206.01.T01;_AED=0.34;_eAED=0.34;_QI=0\|0.37\|0.44\|0.66\|0.25\|0.22\|9\|148\|852
contig240end	exon	290687	290706	290687	ID=MsG0080048206.01.T01:exon:8658;Parent=MsG0080048206.01.T01
contig240end	exon	290851	292243	290851	ID=MsG0080048206.01.T01:exon:8657;Parent=MsG0080048206.01.T01
contig240end	exon	292322	292345	292322	ID=MsG0080048206.01.T01:exon:8656;Parent=MsG0080048206.01.T01
contig240end	exon	293291	293338	293291	ID=MsG0080048206.01.T01:exon:8655;Parent=MsG0080048206.01.T01
contig240end	exon	293415	293493	293415	ID=MsG0080048206.01.T01:exon:8654;Parent=MsG0080048206.01.T01
contig240end	exon	294182	294225	294182	ID=MsG0080048206.01.T01:exon:8653;Parent=MsG0080048206.01.T01
contig240end	exon	294326	294358	294326	ID=MsG0080048206.01.T01:exon:8652;Parent=MsG0080048206.01.T01
contig240end	exon	294947	295962	294947	ID=MsG0080048206.01.T01:exon:8651;Parent=MsG0080048206.01.T01
contig240end	exon	297054	297103	297054	ID=MsG0080048206.01.T01:exon:8650;Parent=MsG0080048206.01.T01
contig240end	CDS	297054	297103	297054	ID=MsG0080048206.01.T01:cds;Parent=MsG0080048206.01.T01
contig240end	CDS	294947	295962	294947	ID=MsG0080048206.01.T01:cds;Parent=MsG0080048206.01.T01
contig240end	CDS	294326	294358	294326	ID=MsG0080048206.01.T01:cds;Parent=MsG0080048206.01.T01
contig240end	CDS	294182	294225	294182	ID=MsG0080048206.01.T01:cds;Parent=MsG0080048206.01.T01
contig240end	CDS	293415	293493	293415	ID=MsG0080048206.01.T01:cds;Parent=MsG0080048206.01.T01
contig240end	CDS	293291	293338	293291	ID=MsG0080048206.01.T01:cds;Parent=MsG0080048206.01.T01
contig240end	CDS	292322	292345	292322	ID=MsG0080048206.01.T01:cds;Parent=MsG0080048206.01.T01
contig240end	CDS	290979	292243	290979	ID=MsG0080048206.01.T01:cds;Parent=MsG0080048206.01.T01
contig240end	three_prime_UTR	290851	290978	290851	ID=MsG0080048206.01.T01:three_prime_utr;Parent=MsG0080048206.01.T01
contig240end	three_prime_UTR	290687	290706	290687	ID=MsG0080048206.01.T01:three_prime_utr;Parent=MsG0080048206.01.T01

Gene Sequence

>MsG0080048206.01.T01

ATGTCACTGATAAGGAATTTTTTTGATACAGGTTTTGAGGGAAACTCAAGCTCTAAAGTGAAATCCAGTCTTCACTCTTCACCATCAATCATGTGCAGAGAAAAATCATTCTTATTCTTAATCCAAATTATTGTAGTAGTGCTACTACTGCATCAGCATCAAACATGTGATGCAATTACAAATAGTAATAACCAGACAAATTGTCCACCTTCTTCATGTGGTAAAATCAACAACATAAAATATCCGTTTCGACTTAAGAATGATCCAACAACCTGTGGTGATCCGAGGTACGAGTTATCCTGCGAAAACAACATCGCAACTTTAACTTTGTTGTCCGGTAAATACTATGTGAAATCAATCAACTACAATAACTACACAATTCGGTTAGTTGATCCCGGAATTGAAGAGGGTGATTGCTCCACCATTCCTCACTATTACTTATACAATTATAATTTCACCAGCTCTTATATCTACGATTCTGTTGATCCATATCAAACTTACCAGAGAAGAATAGTTGATACTACTATATATAAATATGCACCAGCTCTTACTTTGGCAGTTCTTAGAAGTCCTCAATCATTACAAATGTTTCAGCACGTAATTTACATGAATTGTAGCAGTCCTGTGAGGGATGATCCGGTGTATGCGGATGCAGCTTCTTGCATGAACAAGTCGAATTCTCAAGGTGGCCATGTTTATGCCATTGCTGGGGATTTGAAGGTTGGAAACTATAATCATGATGACTGTCACGTGGAGCTTGTTACGCCGATATCTTTTTTCCGTTATAACTACAGCTCTGAGGATTGGCATACTCCTGATGGAAAGTTTTCGTACGAGGACGACAGTTTCCCATATGAATGGAAGGTTACGAATCAAATGTTTGATTACAGTGAAATTCATAGGATGTTGGTGGGTGGTTTTGAAGTTTCTTGGATGACTGGTCCTTGTCAAGATCATTGTGGAGTTCCAGATTGCTATTTGAAAGAAACCACTTGGAGTCTTGAATGCGACGATCCGTCTAATCTATGTAGAACAACGCTGGGTTTTCATGTTGGTTGTGTCACTGGAACTCCATCCAAGCTGAGAATGTTTATCGAAGTGACCCGGATAAGAGAGTTTGGGAATTTTGAGTTTGGTCGGAATGGTTTCGTGGCTATTGGAATAGGTTTGCTGGGTTACTTGATTATGGTTAAACACAGATTCGAAGGTTTTACGAACATAGGGAGTGTTGAAGACTCGATCAAGTTCACGTCAATAGGAGGCTTTGATGGTATTACGTACGGAATTGCCCAAGGACTACTACGTGCAATGGGTATAAGAATATACGGTGGAGCTGAGGGATTTTCTGACTCTAAATTTGGTCTTGACATAGGAAATATCTTTGGAAGGTATATTTTGTCATCATACATTGTAGTTAGATGTGTGTTAGGTCTCATAGTTTTCTTTGCAAAATTGATACATACATATCGAGCACGACATACATCAATGTATGAAAACATCGAAGATTTTCTTCAAGGGAATTCCCTCCTACCAATTAGGTATTCATACAAAGAGATAAAGAAGATGACGAGAGGCTTTAAGGAAAAGTTGGGTGAAGGAGGATACGGTAAGGTTTATAAGGGAAAGCTTCGTAGTGGACCTTTGGTAGCCATAAAAATGTTGGGTAAACTTAAGGGAAATAGAAATGGGCAAGATTTCATTAATGAAGTTGCAACCATAGGAAAAATACATCACACCAATGTGGTGCGACTTGTTGGATTTTGTGTTGAGGGATCAAAACGTGCTCTTGTTTATGATTTCATGCCCAATGGCTCTCTTGATAAATATATTTCCTCTAGAGAAGACCATATTTCCTTAACTTACAAGCAAATGTACGAGATATCTATTGGAATTGCACGTGGAATTGCTTATTTGCATCAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAGCCTCATAACATTCTTCTTGACAAAGACTTCATCGCCAAGGTTTCAGACTTTGGTCTTGCAAAACTTTATCCAGTTGACAATAGCATTGTCACTTTAACGGCTGCAAGAGGAACAATTGGTTACATGGCACCAGAATTGTTCTACAAAAATATTGGTAAAGTTTCCTATAAGGCCGATGTGTATAGCTTTGGAATGCTCTTAATGGAAATAGCAAATAGGAGAAGAAATTTGAACTCAAATGCAGATGATTCAGACCAAATTTTCTTTCCCTATTGGATTTACAACGAATTGATTGAAGAAAGGGAGATAGAAATATTGGGAGAAGCTACCAATGAGGAAAAGAAAAATGTGAAGAAAATGTTCATAATTGCTTTGTGGTGTATACAATTGAACCCTATTGATCGTCCTTCAATGGACAGAGTAATAGAAATGCTCGAAGGAGATATTGAAGACATTGAAATTCCTCCAAAACCTTCTCCATATCCAACTGAAATTATTCAAGATAATGAAGTTAGCTCTAATGAATCTTTATCAGATGATGATGTCACCGGTTCAATTAGTTTTATTGAGGAAACCGTAGAAGATCCTTTACTATATACCTAA

Protein sequence

>MsG0080048206.01.T01

MSLIRNFFDTGFEGNSSSKVKSSLHSSPSIMCREKSFLFLIQIIVVVLLLHQHQTCDAITNSNNQTNCPPSSCGKINNIKYPFRLKNDPTTCGDPRYELSCENNIATLTLLSGKYYVKSINYNNYTIRLVDPGIEEGDCSTIPHYYLYNYNFTSSYIYDSVDPYQTYQRRIVDTTIYKYAPALTLAVLRSPQSLQMFQHVIYMNCSSPVRDDPVYADAASCMNKSNSQGGHVYAIAGDLKVGNYNHDDCHVELVTPISFFRYNYSSEDWHTPDGKFSYEDDSFPYEWKVTNQMFDYSEIHRMLVGGFEVSWMTGPCQDHCGVPDCYLKETTWSLECDDPSNLCRTTLGFHVGCVTGTPSKLRMFIEVTRIREFGNFEFGRNGFVAIGIGLLGYLIMVKHRFEGFTNIGSVEDSIKFTSIGGFDGITYGIAQGLLRAMGIRIYGGAEGFSDSKFGLDIGNIFGRYILSSYIVVRCVLGLIVFFAKLIHTYRARHTSMYENIEDFLQGNSLLPIRYSYKEIKKMTRGFKEKLGEGGYGKVYKGKLRSGPLVAIKMLGKLKGNRNGQDFINEVATIGKIHHTNVVRLVGFCVEGSKRALVYDFMPNGSLDKYISSREDHISLTYKQMYEISIGIARGIAYLHQGCDMQILHFDIKPHNILLDKDFIAKVSDFGLAKLYPVDNSIVTLTAARGTIGYMAPELFYKNIGKVSYKADVYSFGMLLMEIANRRRNLNSNADDSDQIFFPYWIYNELIEEREIEILGEATNEEKKNVKKMFIIALWCIQLNPIDRPSMDRVIEMLEGDIEDIEIPPKPSPYPTEIIQDNEVSSNESLSDDDVTGSISFIEETVEDPLLYT*