AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029906.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029906.01.T01 MTR_5g094450 98.282 524 9 0 1 524 9 532 0.0 1076
MsG0580029906.01.T01 MTR_3g056110 66.728 541 156 8 1 524 9 542 0.0 716
MsG0580029906.01.T01 MTR_5g097480 58.195 543 196 8 5 524 10 544 0.0 617
MsG0580029906.01.T01 MTR_4g133660 54.545 473 207 5 53 523 76 542 2.20e-176 508
MsG0580029906.01.T01 MTR_2g082090 47.917 528 225 7 37 523 60 578 2.00e-164 479
MsG0580029906.01.T01 MTR_2g026250 55.670 388 167 3 138 524 213 596 8.05e-155 455
MsG0580029906.01.T01 MTR_3g089055 50.649 385 185 3 140 524 191 570 1.21e-137 410
MsG0580029906.01.T01 MTR_3g089055 50.649 385 185 3 140 524 186 565 2.72e-137 409
MsG0580029906.01.T01 MTR_1g029420 44.632 475 229 6 79 524 123 592 9.58e-136 406
MsG0580029906.01.T01 MTR_7g027190 36.410 390 220 4 150 524 297 673 9.33e-77 255
MsG0580029906.01.T01 MTR_8g442410 34.286 385 234 6 149 524 151 525 2.71e-67 226
MsG0580029906.01.T01 MTR_3g065980 35.443 395 212 10 150 524 169 540 7.82e-66 223
MsG0580029906.01.T01 MTR_4g064160 31.842 380 246 6 149 523 312 683 8.40e-61 212
MsG0580029906.01.T01 MTR_4g097080 30.789 380 250 5 151 524 131 503 7.08e-60 206
MsG0580029906.01.T01 MTR_2g097410 33.247 385 236 9 149 523 367 740 8.35e-60 211
MsG0580029906.01.T01 MTR_7g074650 36.043 369 217 8 157 524 442 792 6.76e-59 209
MsG0580029906.01.T01 MTR_7g062120 30.457 394 260 7 135 524 357 740 1.10e-58 207
MsG0580029906.01.T01 MTR_4g104020 30.928 388 242 7 150 524 146 520 8.97e-58 201
MsG0580029906.01.T01 MTR_4g064150 32.115 383 245 8 149 523 357 732 4.89e-57 202
MsG0580029906.01.T01 MTR_3g022830 28.401 419 244 6 154 524 26 436 8.13e-57 196
MsG0580029906.01.T01 MTR_4g102790 32.911 395 229 10 147 523 285 661 4.81e-56 199
MsG0580029906.01.T01 MTR_7g057230 34.211 380 228 10 151 523 292 656 6.10e-56 198
MsG0580029906.01.T01 MTR_4g064200 30.504 377 253 5 149 523 280 649 4.28e-55 196
MsG0580029906.01.T01 MTR_2g097390 30.890 382 245 9 149 523 271 640 4.64e-55 196
MsG0580029906.01.T01 MTR_2g097310 30.159 378 253 5 149 523 268 637 1.43e-54 194
MsG0580029906.01.T01 MTR_2g097350 31.332 383 242 11 149 523 270 639 2.30e-54 194
MsG0580029906.01.T01 MTR_4g064120 31.217 378 251 7 149 521 250 623 2.43e-54 194
MsG0580029906.01.T01 MTR_4g064180 31.398 379 249 7 149 521 250 623 2.53e-54 194
MsG0580029906.01.T01 MTR_6g047750 34.015 391 220 11 151 524 293 662 6.44e-53 190
MsG0580029906.01.T01 MTR_5g015490 30.526 380 253 6 153 524 114 490 1.99e-51 183
MsG0580029906.01.T01 MTR_2g097467 29.787 376 256 4 149 523 285 653 9.54e-51 184
MsG0580029906.01.T01 MTR_2g097473 31.481 378 247 8 149 523 285 653 8.14e-50 181
MsG0580029906.01.T01 MTR_4g077760 34.358 358 214 9 173 524 213 555 2.45e-49 178
MsG0580029906.01.T01 MTR_2g097463 30.423 378 251 6 149 523 286 654 1.89e-48 178
MsG0580029906.01.T01 MTR_4g076020 32.432 370 220 9 157 524 88 429 8.12e-46 166
MsG0580029906.01.T01 MTR_1g096030 29.657 408 229 16 150 524 77 459 9.01e-46 167
MsG0580029906.01.T01 MTR_2g089100 25.342 438 295 7 112 523 11 442 2.01e-43 160
MsG0580029906.01.T01 MTR_2g097380 25.180 417 270 8 110 523 183 560 4.10e-42 159
MsG0580029906.01.T01 MTR_1g069725 29.684 411 261 13 118 523 75 462 1.05e-40 153
MsG0580029906.01.T01 MTR_3g072710 28.718 390 255 9 150 523 117 499 4.23e-39 149
MsG0580029906.01.T01 MTR_2g099110 29.367 395 241 10 152 524 73 451 1.38e-38 147
MsG0580029906.01.T01 MTR_2g034250 26.804 388 262 8 150 524 207 585 7.16e-37 144
MsG0580029906.01.T01 MTR_5g058860 29.337 392 248 11 150 523 116 496 2.50e-34 135
MsG0580029906.01.T01 MTR_5g015950 24.201 438 266 9 139 523 21 445 4.74e-34 134
MsG0580029906.01.T01 MTR_3g053270 24.201 438 266 9 139 523 21 445 4.74e-34 134
MsG0580029906.01.T01 MTR_4g095500 25.121 414 268 8 150 523 56 467 1.32e-33 133
MsG0580029906.01.T01 MTR_4g026485 27.056 377 247 10 154 524 270 624 1.02e-31 129
MsG0580029906.01.T01 MTR_2g034280 24.935 385 270 10 150 524 200 575 6.37e-31 127
MsG0580029906.01.T01 MTR_2g034260 25.127 394 260 10 150 524 207 584 9.47e-31 126
MsG0580029906.01.T01 MTR_4g076140 31.556 225 145 3 138 361 32 248 1.29e-29 122
MsG0580029906.01.T01 MTR_4g076140 38.298 141 86 1 385 524 329 469 1.04e-25 110
MsG0580029906.01.T01 MTR_5g009080 29.439 214 143 3 150 363 53 258 1.36e-29 122
MsG0580029906.01.T01 MTR_5g009080 36.879 141 88 1 385 524 338 478 1.27e-23 104
MsG0580029906.01.T01 MTR_7g109580 26.357 387 257 11 149 524 185 554 1.68e-29 122
MsG0580029906.01.T01 MTR_0092s0100 25.201 373 260 7 154 524 376 731 1.52e-28 120
MsG0580029906.01.T01 MTR_0092s0100 25.201 373 260 7 154 524 373 728 1.73e-28 120
MsG0580029906.01.T01 MTR_8g093070 26.214 412 269 14 120 523 111 495 3.13e-26 112
MsG0580029906.01.T01 MTR_8g020840 24.069 403 254 15 151 524 169 548 1.20e-20 95.9
MsG0580029906.01.T01 MTR_1g086970 24.265 408 272 14 133 524 92 478 1.58e-20 95.1
MsG0580029906.01.T01 MTR_3g022580 32.727 110 74 0 415 524 74 183 1.69e-15 75.1
MsG0580029906.01.T01 MTR_8g077940 23.773 387 261 13 149 524 178 541 2.76e-15 79.0
MsG0580029906.01.T01 MTR_3g022005 36.559 93 59 0 432 524 33 125 1.31e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029906.01.T01 AT5G48150 56.117 515 197 6 11 524 4 490 0.0 566
MsG0580029906.01.T01 AT5G48150 56.117 515 197 6 11 524 4 490 0.0 566
MsG0580029906.01.T01 AT5G48150 56.117 515 197 6 11 524 4 490 0.0 566
MsG0580029906.01.T01 AT5G48150 56.117 515 197 6 11 524 4 490 0.0 566
MsG0580029906.01.T01 AT1G50600 56.685 531 202 9 5 524 84 597 0.0 566
MsG0580029906.01.T01 AT1G50600 56.685 531 202 9 5 524 88 601 0.0 566
MsG0580029906.01.T01 AT1G50600 56.497 531 203 8 5 524 13 526 0.0 566
MsG0580029906.01.T01 AT2G04890 61.719 384 136 3 141 524 41 413 8.86e-176 501
MsG0580029906.01.T01 AT4G17230 47.338 526 236 8 19 524 21 525 1.01e-155 455
MsG0580029906.01.T01 AT4G17230 47.338 526 236 8 19 524 21 525 1.01e-155 455
MsG0580029906.01.T01 AT1G21450 46.875 448 220 5 91 524 150 593 1.82e-138 413
MsG0580029906.01.T01 AT1G66350 35.884 379 215 11 150 524 152 506 7.90e-69 230
MsG0580029906.01.T01 AT1G14920 35.526 380 221 11 150 524 169 529 1.46e-65 222
MsG0580029906.01.T01 AT2G01570 36.483 381 216 12 150 524 221 581 5.68e-65 221
MsG0580029906.01.T01 AT3G03450 34.555 382 227 9 150 524 180 545 1.32e-64 219
MsG0580029906.01.T01 AT1G07530 33.333 378 246 4 148 523 391 764 2.80e-64 223
MsG0580029906.01.T01 AT5G17490 33.681 383 223 9 150 524 157 516 3.55e-63 215
MsG0580029906.01.T01 AT5G52510 33.842 393 223 9 151 524 266 640 4.72e-60 209
MsG0580029906.01.T01 AT3G54220 36.043 369 218 8 157 523 297 649 3.90e-59 207
MsG0580029906.01.T01 AT2G29060 33.770 382 239 6 149 523 280 654 4.55e-59 207
MsG0580029906.01.T01 AT2G29060 33.770 382 239 6 149 523 317 691 9.36e-59 207
MsG0580029906.01.T01 AT5G41920 35.156 384 217 13 150 524 40 400 1.63e-55 192
MsG0580029906.01.T01 AT3G46600 29.921 381 251 4 150 524 1 371 7.66e-55 189
MsG0580029906.01.T01 AT3G46600 30.105 382 251 4 149 524 208 579 3.27e-54 192
MsG0580029906.01.T01 AT3G46600 30.105 382 251 4 149 524 176 547 3.44e-54 192
MsG0580029906.01.T01 AT1G07520 28.442 443 292 10 100 523 92 528 5.11e-54 191
MsG0580029906.01.T01 AT1G07520 28.442 443 292 10 100 523 92 528 5.11e-54 191
MsG0580029906.01.T01 AT5G59450 29.211 380 261 5 149 524 223 598 1.00e-53 192
MsG0580029906.01.T01 AT1G07520 28.442 443 292 10 100 523 256 692 1.90e-53 192
MsG0580029906.01.T01 AT1G07520 28.442 443 292 10 100 523 257 693 2.35e-53 192
MsG0580029906.01.T01 AT2G29065 30.366 382 257 5 149 523 248 627 3.54e-52 187
MsG0580029906.01.T01 AT5G66770 33.333 381 235 8 150 524 217 584 1.07e-51 186
MsG0580029906.01.T01 AT2G37650 29.443 377 259 5 149 524 343 713 1.12e-50 185
MsG0580029906.01.T01 AT2G37650 29.443 377 259 5 149 524 331 701 1.13e-50 185
MsG0580029906.01.T01 AT1G55580 30.361 415 239 9 150 524 41 445 1.36e-50 179
MsG0580029906.01.T01 AT1G63100 31.282 390 244 6 149 523 248 628 4.47e-50 182
MsG0580029906.01.T01 AT1G63100 31.282 390 244 6 149 523 273 653 7.99e-50 182
MsG0580029906.01.T01 AT3G50650 32.041 387 236 8 149 524 172 542 1.61e-49 179
MsG0580029906.01.T01 AT4G37650 28.934 394 248 11 153 524 146 529 5.31e-47 172
MsG0580029906.01.T01 AT4G08250 28.990 307 201 6 225 523 179 476 1.05e-34 136
MsG0580029906.01.T01 AT3G49950 23.896 385 278 6 150 523 27 407 2.17e-33 131
MsG0580029906.01.T01 AT1G50420 32.075 212 138 1 150 361 54 259 6.51e-31 125
MsG0580029906.01.T01 AT1G50420 38.028 142 85 2 385 524 339 479 9.84e-26 110
MsG0580029906.01.T01 AT3G60630 27.119 354 221 10 186 524 291 622 7.03e-24 105
MsG0580029906.01.T01 AT2G45160 25.594 379 227 14 169 524 293 639 2.75e-23 104
MsG0580029906.01.T01 AT4G36710 26.478 389 249 14 149 524 121 485 1.15e-21 98.6
MsG0580029906.01.T01 AT4G00150 24.810 395 232 15 150 524 205 554 1.28e-21 99.0
MsG0580029906.01.T01 AT3G13840 24.041 391 254 12 151 524 146 510 7.30e-20 93.2
MsG0580029906.01.T01 AT5G67411 31.683 202 122 6 272 461 1 198 3.54e-16 77.8

Find 92 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAAAATGGTTTCGGTTTC+AGG 0.082618 5:-103810814 MsG0580029906.01.T01:CDS
ATTTGTCCTTACCTCAAATT+TGG 0.175784 5:-103810637 MsG0580029906.01.T01:CDS
TCTTTACTAGTAGCAGTTAT+AGG 0.239415 5:+103810691 None:intergenic
AACTATTCATCTTCTGATAA+TGG 0.319978 5:-103811258 MsG0580029906.01.T01:CDS
TATGCTCCTAACCTTTGAAT+TGG 0.322143 5:+103810787 None:intergenic
GCATTTGAGTTTCATGCTAT+AGG 0.322420 5:-103810367 MsG0580029906.01.T01:CDS
CATTTGAGTTTCATGCTATA+GGG 0.329203 5:-103810366 MsG0580029906.01.T01:CDS
CAATTAATATAAGAGCTTAA+TGG 0.338228 5:+103809908 None:intergenic
AGCAATATCAGAAAATGATA+TGG 0.350309 5:-103810866 MsG0580029906.01.T01:CDS
ATATAAGAGCTTAATGGATA+TGG 0.358531 5:+103809914 None:intergenic
TATAGGTTCTTTGCATTTCA+AGG 0.367838 5:+103810708 None:intergenic
AATGTCAGAGTTGTCGAAAA+TGG 0.368522 5:-103810827 MsG0580029906.01.T01:CDS
CTGATCTTCGGCGGTCCTCC+AGG 0.371989 5:+103810490 None:intergenic
AAAGATGGTGCTCTTTATCT+TGG 0.376459 5:-103809833 MsG0580029906.01.T01:CDS
GGAAATCCAATTCAAAGGTT+AGG 0.380880 5:-103810793 MsG0580029906.01.T01:CDS
GGAGGAGGACTTGGTATTGT+TGG 0.388869 5:-103810427 MsG0580029906.01.T01:CDS
CAAGCACTTGCTGGAAAACC+TGG 0.390705 5:-103810508 MsG0580029906.01.T01:CDS
CCGACATGTAACCAAATTTG+AGG 0.399215 5:+103810626 None:intergenic
AACTTCGCTTTCATCTTTCA+AGG 0.402188 5:+103810582 None:intergenic
GTTGCAAGAATAGCTTCTTC+AGG 0.410550 5:-103810748 MsG0580029906.01.T01:CDS
TCGACGAAACGTGCAAAGAA+TGG 0.431715 5:+103810136 None:intergenic
AGTCTAATCCAAGCACTTGC+TGG 0.434105 5:-103810517 MsG0580029906.01.T01:CDS
TGTTCTAAAGCTTGAAATGA+AGG 0.434140 5:+103811219 None:intergenic
GGCAAAATGTTTGTCTCCTA+AGG 0.436222 5:-103810200 MsG0580029906.01.T01:CDS
TCTTGTGCCACAAGTCATCT+TGG 0.436674 5:+103811070 None:intergenic
GACTATTGTTAGAAGATTCA+AGG 0.438602 5:+103811193 None:intergenic
ATCCTTTCTCTGTGCTCCCT+TGG 0.438790 5:+103810064 None:intergenic
TATGCTAGGGGAGGAGGACT+TGG 0.450543 5:-103810436 MsG0580029906.01.T01:CDS
ATGGTGCTCTTTATCTTGGT+TGG 0.450648 5:-103809829 MsG0580029906.01.T01:CDS
AGATCATGTTTCACAATGGC+TGG 0.452840 5:-103809944 MsG0580029906.01.T01:CDS
CTTGTAGAGTATAATGTCCT+TGG 0.456322 5:+103809858 None:intergenic
AAACCGGTTATTCTGATCTT+CGG 0.458599 5:+103810478 None:intergenic
CTCTTATTACCTCTAGTGCT+TGG 0.460840 5:-103809796 MsG0580029906.01.T01:CDS
GACTTGGTATTGTTGGAGAA+AGG 0.465848 5:-103810420 MsG0580029906.01.T01:CDS
TTTGGTTACATGTCGGCAAA+TGG 0.469278 5:-103810619 MsG0580029906.01.T01:CDS
AGAGTTGTCGAAAATGGTTT+CGG 0.470075 5:-103810821 MsG0580029906.01.T01:CDS
TTATTACCTCTAGTGCTTGG+AGG 0.473858 5:-103809793 MsG0580029906.01.T01:CDS
CTTCACCACGACGAAGTTCA+AGG 0.477100 5:+103810314 None:intergenic
TCGCGATCGATTAGTGAGAT+TGG 0.480871 5:-103810221 MsG0580029906.01.T01:CDS
CCGCCGAAGATCAGAATAAC+CGG 0.481757 5:-103810481 MsG0580029906.01.T01:CDS
TGCCAAGGGAGCACAGAGAA+AGG 0.488020 5:-103810066 MsG0580029906.01.T01:CDS
TCAGCTTATGCTAGGGGAGG+AGG 0.490751 5:-103810442 MsG0580029906.01.T01:CDS
CAATTGATGTTGCTTTGCCA+AGG 0.496515 5:-103810081 MsG0580029906.01.T01:CDS
TCAACAAGAGTCACTACCTT+AGG 0.498490 5:+103810184 None:intergenic
GAAATGAAGGGTAGGTTGAA+TGG 0.500307 5:+103811232 None:intergenic
TGAAGTTGAGTCATCAAAAC+CGG 0.501919 5:+103810462 None:intergenic
TTTCAGGAAATCCAATTCAA+AGG 0.510331 5:-103810798 MsG0580029906.01.T01:CDS
TAATGTGGAACAGCATTGCT+TGG 0.522983 5:-103810041 MsG0580029906.01.T01:CDS
TGAATCTTCTAACAATAGTC+CGG 0.523182 5:-103811190 MsG0580029906.01.T01:CDS
ACTCAACTTCAGCTTATGCT+AGG 0.530700 5:-103810450 MsG0580029906.01.T01:CDS
CTCAACTTCAGCTTATGCTA+GGG 0.532037 5:-103810449 MsG0580029906.01.T01:CDS
GAGCTTGAAAATGCTATGCT+AGG 0.532196 5:-103811042 MsG0580029906.01.T01:CDS
GTACATCTTCATCCGGTACA+TGG 0.543566 5:+103810260 None:intergenic
CCACCATGTACATCTTCATC+CGG 0.547887 5:+103810253 None:intergenic
CAAGCACTAGAGGTAATAAG+AGG 0.548387 5:+103809797 None:intergenic
CATGATGCTGCACCATGTAC+CGG 0.549165 5:-103810272 MsG0580029906.01.T01:CDS
CGGTACATGGTGCAGCATCA+TGG 0.552726 5:+103810273 None:intergenic
TTTGACTGTAGCTTCGAGAC+CGG 0.552976 5:+103811171 None:intergenic
TGATTGAGATGATATCTAGA+GGG 0.555186 5:-103810921 MsG0580029906.01.T01:CDS
ATTTGAGTTTCATGCTATAG+GGG 0.555615 5:-103810365 MsG0580029906.01.T01:CDS
ATGTAACCAAATTTGAGGTA+AGG 0.557906 5:+103810631 None:intergenic
ACTATTGTTAGAAGATTCAA+GGG 0.562160 5:+103811194 None:intergenic
GTCACGAGGTTCTGAAGAAG+TGG 0.562877 5:-103809967 MsG0580029906.01.T01:CDS
TCTTCAAGTCTCACCTCAGA+AGG 0.563852 5:+103810337 None:intergenic
ATGATATGGAAACAGCTGAA+TGG 0.565722 5:-103810852 MsG0580029906.01.T01:CDS
GTTCTAAAGCTTGAAATGAA+GGG 0.567885 5:+103811220 None:intergenic
CCTCAAATTTGGTTACATGT+CGG 0.568322 5:-103810626 MsG0580029906.01.T01:CDS
AATTGATGTTGCTTTGCCAA+GGG 0.571262 5:-103810080 MsG0580029906.01.T01:CDS
TGCAAAGAATGGAAGCTCGT+TGG 0.585649 5:+103810147 None:intergenic
TAAAGCTTGAAATGAAGGGT+AGG 0.588089 5:+103811224 None:intergenic
GTCAATTTAGTAGCGTGTGA+AGG 0.591391 5:-103810007 MsG0580029906.01.T01:CDS
AGATTAATCAGGGAATTCAG+TGG 0.595212 5:-103810543 MsG0580029906.01.T01:CDS
GCATTGCTTGGCTCGCGAAG+TGG 0.604747 5:-103810029 MsG0580029906.01.T01:CDS
TATACTCTACAAGAGAAAGA+TGG 0.606593 5:-103809848 MsG0580029906.01.T01:CDS
ATGATTGAGATGATATCTAG+AGG 0.606697 5:-103810922 MsG0580029906.01.T01:CDS
AAGGTTAGGAGCATACATGT+TGG 0.612173 5:-103810779 MsG0580029906.01.T01:CDS
GATTGAGATGATATCTAGAG+GGG 0.616355 5:-103810920 MsG0580029906.01.T01:CDS
TCGTCGTGGTGAAGCTATTG+CGG 0.619071 5:-103810305 MsG0580029906.01.T01:CDS
GTATCACCTCCAAGCACTAG+AGG 0.626501 5:+103809787 None:intergenic
CACATAACCAAGATGACTTG+TGG 0.627441 5:-103811077 MsG0580029906.01.T01:CDS
GCACAGAGAAAGGATTAATG+TGG 0.636528 5:-103810056 MsG0580029906.01.T01:CDS
TATAGGGGCTAGTCCTTCTG+AGG 0.643175 5:-103810350 MsG0580029906.01.T01:CDS
CCGGTTATTCTGATCTTCGG+CGG 0.646295 5:+103810481 None:intergenic
ACTTCAGCTTATGCTAGGGG+AGG 0.652120 5:-103810445 MsG0580029906.01.T01:CDS
TCAACTTCAGCTTATGCTAG+GGG 0.673617 5:-103810448 MsG0580029906.01.T01:CDS
AGAGAGAGTTGAACGTCACG+AGG 0.678622 5:-103809981 MsG0580029906.01.T01:CDS
GAAGACCTTGAACTTCGTCG+TGG 0.689434 5:-103810319 MsG0580029906.01.T01:CDS
AATCTTCTAGAAAATTACCA+AGG 0.696750 5:-103809875 MsG0580029906.01.T01:CDS
GTGGAGATCATGTTTCACAA+TGG 0.702263 5:-103809948 MsG0580029906.01.T01:CDS
GCACTTGCTGGAAAACCTGG+AGG 0.713946 5:-103810505 MsG0580029906.01.T01:CDS
GTACCGGATGAAGATGTACA+TGG 0.718087 5:-103810256 MsG0580029906.01.T01:CDS
CCGGATGAAGATGTACATGG+TGG 0.827271 5:-103810253 MsG0580029906.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTAATATAAGAGCTTAA+TGG + Chr5:103811227-103811246 None:intergenic 20.0%
!!! AATTGATTTTCAGATTAATC+AGG - Chr5:103810578-103810597 MsG0580029906.01.T01:CDS 20.0%
!!! ATTGATTTTCAGATTAATCA+GGG - Chr5:103810579-103810598 MsG0580029906.01.T01:CDS 20.0%
!!! TATGAATCTAGATTTTGTAT+AGG + Chr5:103809826-103809845 None:intergenic 20.0%
! AACTATTCATCTTCTGATAA+TGG - Chr5:103809874-103809893 MsG0580029906.01.T01:CDS 25.0%
! ACTATTGTTAGAAGATTCAA+GGG + Chr5:103809941-103809960 None:intergenic 25.0%
! AGCAATATCAGAAAATGATA+TGG - Chr5:103810266-103810285 MsG0580029906.01.T01:CDS 25.0%
!! AATCTTCTAGAAAATTACCA+AGG - Chr5:103811257-103811276 MsG0580029906.01.T01:CDS 25.0%
!! ATATAAGAGCTTAATGGATA+TGG + Chr5:103811221-103811240 None:intergenic 25.0%
ATGATTGAGATGATATCTAG+AGG - Chr5:103810210-103810229 MsG0580029906.01.T01:CDS 30.0%
ATTTGTCCTTACCTCAAATT+TGG - Chr5:103810495-103810514 MsG0580029906.01.T01:CDS 30.0%
GACTATTGTTAGAAGATTCA+AGG + Chr5:103809942-103809961 None:intergenic 30.0%
TATACTCTACAAGAGAAAGA+TGG - Chr5:103811284-103811303 MsG0580029906.01.T01:CDS 30.0%
TATAGGTTCTTTGCATTTCA+AGG + Chr5:103810427-103810446 None:intergenic 30.0%
TCTTTACTAGTAGCAGTTAT+AGG + Chr5:103810444-103810463 None:intergenic 30.0%
TGAATCTTCTAACAATAGTC+CGG - Chr5:103809942-103809961 MsG0580029906.01.T01:CDS 30.0%
TGATTGAGATGATATCTAGA+GGG - Chr5:103810211-103810230 MsG0580029906.01.T01:CDS 30.0%
TTTCAGGAAATCCAATTCAA+AGG - Chr5:103810334-103810353 MsG0580029906.01.T01:CDS 30.0%
! ATGTAACCAAATTTGAGGTA+AGG + Chr5:103810504-103810523 None:intergenic 30.0%
! ATTTGAGTTTCATGCTATAG+GGG - Chr5:103810767-103810786 MsG0580029906.01.T01:CDS 30.0%
! CATTTGAGTTTCATGCTATA+GGG - Chr5:103810766-103810785 MsG0580029906.01.T01:CDS 30.0%
!! GTTCTAAAGCTTGAAATGAA+GGG + Chr5:103809915-103809934 None:intergenic 30.0%
!! TGTTCTAAAGCTTGAAATGA+AGG + Chr5:103809916-103809935 None:intergenic 30.0%
!!! TTTTGAGATTCTCATTTTGC+AGG + Chr5:103809855-103809874 None:intergenic 30.0%
AAACCGGTTATTCTGATCTT+CGG + Chr5:103810657-103810676 None:intergenic 35.0%
AAAGATGGTGCTCTTTATCT+TGG - Chr5:103811299-103811318 MsG0580029906.01.T01:CDS 35.0%
AACTTCGCTTTCATCTTTCA+AGG + Chr5:103810553-103810572 None:intergenic 35.0%
AATGTCAGAGTTGTCGAAAA+TGG - Chr5:103810305-103810324 MsG0580029906.01.T01:CDS 35.0%
AGAGTTGTCGAAAATGGTTT+CGG - Chr5:103810311-103810330 MsG0580029906.01.T01:CDS 35.0%
AGATTAATCAGGGAATTCAG+TGG - Chr5:103810589-103810608 MsG0580029906.01.T01:CDS 35.0%
ATGATATGGAAACAGCTGAA+TGG - Chr5:103810280-103810299 MsG0580029906.01.T01:CDS 35.0%
CCTCAAATTTGGTTACATGT+CGG - Chr5:103810506-103810525 MsG0580029906.01.T01:CDS 35.0%
CTTGTAGAGTATAATGTCCT+TGG + Chr5:103811277-103811296 None:intergenic 35.0%
GATTGAGATGATATCTAGAG+GGG - Chr5:103810212-103810231 MsG0580029906.01.T01:CDS 35.0%
GGAAATCCAATTCAAAGGTT+AGG - Chr5:103810339-103810358 MsG0580029906.01.T01:CDS 35.0%
TAAAGCTTGAAATGAAGGGT+AGG + Chr5:103809911-103809930 None:intergenic 35.0%
TATGCTCCTAACCTTTGAAT+TGG + Chr5:103810348-103810367 None:intergenic 35.0%
TGAAGTTGAGTCATCAAAAC+CGG + Chr5:103810673-103810692 None:intergenic 35.0%
! GCATTTGAGTTTCATGCTAT+AGG - Chr5:103810765-103810784 MsG0580029906.01.T01:CDS 35.0%
! TTTTCTGCCTCTAACAAAAG+TGG + Chr5:103810180-103810199 None:intergenic 35.0%
! TTTTGTTAGAGGCAGAAAAG+TGG - Chr5:103810181-103810200 MsG0580029906.01.T01:CDS 35.0%
!! AATTGATGTTGCTTTGCCAA+GGG - Chr5:103811052-103811071 MsG0580029906.01.T01:CDS 35.0%
!! ATCTGATCCACTTTTGTTAG+AGG - Chr5:103810170-103810189 MsG0580029906.01.T01:CDS 35.0%
ACTCAACTTCAGCTTATGCT+AGG - Chr5:103810682-103810701 MsG0580029906.01.T01:CDS 40.0%
AGATCATGTTTCACAATGGC+TGG - Chr5:103811188-103811207 MsG0580029906.01.T01:CDS 40.0%
ATGGTGCTCTTTATCTTGGT+TGG - Chr5:103811303-103811322 MsG0580029906.01.T01:CDS 40.0%
CAAGCACTAGAGGTAATAAG+AGG + Chr5:103811338-103811357 None:intergenic 40.0%
CACATAACCAAGATGACTTG+TGG - Chr5:103810055-103810074 MsG0580029906.01.T01:CDS 40.0%
CCGACATGTAACCAAATTTG+AGG + Chr5:103810509-103810528 None:intergenic 40.0%
CTCAACTTCAGCTTATGCTA+GGG - Chr5:103810683-103810702 MsG0580029906.01.T01:CDS 40.0%
CTCTTATTACCTCTAGTGCT+TGG - Chr5:103811336-103811355 MsG0580029906.01.T01:CDS 40.0%
GAGCTTGAAAATGCTATGCT+AGG - Chr5:103810090-103810109 MsG0580029906.01.T01:CDS 40.0%
GCACAGAGAAAGGATTAATG+TGG - Chr5:103811076-103811095 MsG0580029906.01.T01:CDS 40.0%
GGCAAAATGTTTGTCTCCTA+AGG - Chr5:103810932-103810951 MsG0580029906.01.T01:CDS 40.0%
GTCAATTTAGTAGCGTGTGA+AGG - Chr5:103811125-103811144 MsG0580029906.01.T01:CDS 40.0%
GTGGAGATCATGTTTCACAA+TGG - Chr5:103811184-103811203 MsG0580029906.01.T01:CDS 40.0%
GTTGCAAGAATAGCTTCTTC+AGG - Chr5:103810384-103810403 MsG0580029906.01.T01:CDS 40.0%
TAATGTGGAACAGCATTGCT+TGG - Chr5:103811091-103811110 MsG0580029906.01.T01:CDS 40.0%
TCAACAAGAGTCACTACCTT+AGG + Chr5:103810951-103810970 None:intergenic 40.0%
TCAACTTCAGCTTATGCTAG+GGG - Chr5:103810684-103810703 MsG0580029906.01.T01:CDS 40.0%
TCGAAAATGGTTTCGGTTTC+AGG - Chr5:103810318-103810337 MsG0580029906.01.T01:CDS 40.0%
TTATTACCTCTAGTGCTTGG+AGG - Chr5:103811339-103811358 MsG0580029906.01.T01:CDS 40.0%
TTTGGTTACATGTCGGCAAA+TGG - Chr5:103810513-103810532 MsG0580029906.01.T01:CDS 40.0%
! AAGGTTAGGAGCATACATGT+TGG - Chr5:103810353-103810372 MsG0580029906.01.T01:CDS 40.0%
! GAAATGAAGGGTAGGTTGAA+TGG + Chr5:103809903-103809922 None:intergenic 40.0%
! GACTTGGTATTGTTGGAGAA+AGG - Chr5:103810712-103810731 MsG0580029906.01.T01:CDS 40.0%
!! CAATTGATGTTGCTTTGCCA+AGG - Chr5:103811051-103811070 MsG0580029906.01.T01:CDS 40.0%
AGTCTAATCCAAGCACTTGC+TGG - Chr5:103810615-103810634 MsG0580029906.01.T01:CDS 45.0%
CCACCATGTACATCTTCATC+CGG + Chr5:103810882-103810901 None:intergenic 45.0%
GTACATCTTCATCCGGTACA+TGG + Chr5:103810875-103810894 None:intergenic 45.0%
GTACCGGATGAAGATGTACA+TGG - Chr5:103810876-103810895 MsG0580029906.01.T01:CDS 45.0%
TCGACGAAACGTGCAAAGAA+TGG + Chr5:103810999-103811018 None:intergenic 45.0%
TCGCGATCGATTAGTGAGAT+TGG - Chr5:103810911-103810930 MsG0580029906.01.T01:CDS 45.0%
TCTTCAAGTCTCACCTCAGA+AGG + Chr5:103810798-103810817 None:intergenic 45.0%
TCTTGTGCCACAAGTCATCT+TGG + Chr5:103810065-103810084 None:intergenic 45.0%
TGCAAAGAATGGAAGCTCGT+TGG + Chr5:103810988-103811007 None:intergenic 45.0%
TTTGACTGTAGCTTCGAGAC+CGG + Chr5:103809964-103809983 None:intergenic 45.0%
ACTTCAGCTTATGCTAGGGG+AGG - Chr5:103810687-103810706 MsG0580029906.01.T01:CDS 50.0%
AGAGAGAGTTGAACGTCACG+AGG - Chr5:103811151-103811170 MsG0580029906.01.T01:CDS 50.0%
ATCCTTTCTCTGTGCTCCCT+TGG + Chr5:103811071-103811090 None:intergenic 50.0%
CATGATGCTGCACCATGTAC+CGG - Chr5:103810860-103810879 MsG0580029906.01.T01:CDS 50.0%
CCGCCGAAGATCAGAATAAC+CGG - Chr5:103810651-103810670 MsG0580029906.01.T01:CDS 50.0%
CCGGATGAAGATGTACATGG+TGG - Chr5:103810879-103810898 MsG0580029906.01.T01:CDS 50.0%
CCGGTTATTCTGATCTTCGG+CGG + Chr5:103810654-103810673 None:intergenic 50.0%
CTTCACCACGACGAAGTTCA+AGG + Chr5:103810821-103810840 None:intergenic 50.0%
GAAGACCTTGAACTTCGTCG+TGG - Chr5:103810813-103810832 MsG0580029906.01.T01:CDS 50.0%
TCGTCGTGGTGAAGCTATTG+CGG - Chr5:103810827-103810846 MsG0580029906.01.T01:CDS 50.0%
! CAAGCACTTGCTGGAAAACC+TGG - Chr5:103810624-103810643 MsG0580029906.01.T01:CDS 50.0%
! CAGGTTTTCCAGCAAGTGCT+TGG + Chr5:103810626-103810645 None:intergenic 50.0%
! GGAGGAGGACTTGGTATTGT+TGG - Chr5:103810705-103810724 MsG0580029906.01.T01:CDS 50.0%
!! GTCACGAGGTTCTGAAGAAG+TGG - Chr5:103811165-103811184 MsG0580029906.01.T01:CDS 50.0%
!! TATAGGGGCTAGTCCTTCTG+AGG - Chr5:103810782-103810801 MsG0580029906.01.T01:CDS 50.0%
CGGTACATGGTGCAGCATCA+TGG + Chr5:103810862-103810881 None:intergenic 55.0%
TATGCTAGGGGAGGAGGACT+TGG - Chr5:103810696-103810715 MsG0580029906.01.T01:CDS 55.0%
TCAGCTTATGCTAGGGGAGG+AGG - Chr5:103810690-103810709 MsG0580029906.01.T01:CDS 55.0%
! GCACTTGCTGGAAAACCTGG+AGG - Chr5:103810627-103810646 MsG0580029906.01.T01:CDS 55.0%
! TGCCAAGGGAGCACAGAGAA+AGG - Chr5:103811066-103811085 MsG0580029906.01.T01:CDS 55.0%
! GCATTGCTTGGCTCGCGAAG+TGG - Chr5:103811103-103811122 MsG0580029906.01.T01:CDS 60.0%
CTGATCTTCGGCGGTCCTCC+AGG + Chr5:103810645-103810664 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 103809790 103811364 103809790 ID=MsG0580029906.01;Name=MsG0580029906.01
Chr5 mRNA 103809790 103811364 103809790 ID=MsG0580029906.01.T01;Parent=MsG0580029906.01;Name=MsG0580029906.01.T01;_AED=0.28;_eAED=0.28;_QI=0|-1|0|1|-1|1|1|0|524
Chr5 exon 103809790 103811364 103809790 ID=MsG0580029906.01.T01:exon:35278;Parent=MsG0580029906.01.T01
Chr5 CDS 103809790 103811364 103809790 ID=MsG0580029906.01.T01:cds;Parent=MsG0580029906.01.T01
Gene Sequence

>MsG0580029906.01.T01

ATGTCATATGATTCTAGCATGTTCAGCATTGAGCCTATACAAAATCTAGATTCATATTGCTTCCTGCAAAATGAGAATCTCAAAAACTATTCATCTTCTGATAATGGTAGCCATTCAACCTACCCTTCATTTCAAGCTTTAGAACAAACCCTTGAATCTTCTAACAATAGTCCGGTCTCGAAGCTACAGTCAAAATCTTACACGTTCACGTCACGAAACTCTCTTGAAATTATCAATGATTCTTTAGAGAACGAATCTTGCTTGACACATAACCAAGATGACTTGTGGCACAAGATAAGAGAGCTTGAAAATGCTATGCTAGGACATGATGCTGCAGATATGCTAGACATATATAATGATACTGTAATAATTCAACAAGAATCTGATCCACTTTTGTTAGAGGCAGAAAAGTGGAACAAAATGATTGAGATGATATCTAGAGGGGATTTGAAAGAAATTCTTTTTACGTGTGCAAAAGCAATATCAGAAAATGATATGGAAACAGCTGAATGGTTAATGTCAGAGTTGTCGAAAATGGTTTCGGTTTCAGGAAATCCAATTCAAAGGTTAGGAGCATACATGTTGGAAGCTCTTGTTGCAAGAATAGCTTCTTCAGGAAGCATAATATACAAATCCTTGAAATGCAAAGAACCTATAACTGCTACTAGTAAAGAACTACTCTCACACATGCATGTGCTTTATGAAATTTGTCCTTACCTCAAATTTGGTTACATGTCGGCAAATGGTGTAATTGCTGAAGCCTTGAAAGATGAAAGCGAAGTTCATATAATTGATTTTCAGATTAATCAGGGAATTCAGTGGATGAGTCTAATCCAAGCACTTGCTGGAAAACCTGGAGGACCGCCGAAGATCAGAATAACCGGTTTTGATGACTCAACTTCAGCTTATGCTAGGGGAGGAGGACTTGGTATTGTTGGAGAAAGGTTGTCAAAACTTGCAGAGTCATATAATGTAGCATTTGAGTTTCATGCTATAGGGGCTAGTCCTTCTGAGGTGAGACTTGAAGACCTTGAACTTCGTCGTGGTGAAGCTATTGCGGTGAATTTTGCCATGATGCTGCACCATGTACCGGATGAAGATGTACATGGTGGTAAGAATCATCGCGATCGATTAGTGAGATTGGCAAAATGTTTGTCTCCTAAGGTAGTGACTCTTGTTGAGCAAGAATCAAATACCAACGAGCTTCCATTCTTTGCACGTTTCGTCGAGACAATGAACTACTACTTCGCAGTTTTTGAATCAATTGATGTTGCTTTGCCAAGGGAGCACAGAGAAAGGATTAATGTGGAACAGCATTGCTTGGCTCGCGAAGTGGTCAATTTAGTAGCGTGTGAAGGCGCAGAGAGAGTTGAACGTCACGAGGTTCTGAAGAAGTGGAGATCATGTTTCACAATGGCTGGATTCACACCATATCCATTAAGCTCTTATATTAATTGTTCAATACAAAATCTTCTAGAAAATTACCAAGGACATTATACTCTACAAGAGAAAGATGGTGCTCTTTATCTTGGTTGGATGAATCAACCTCTTATTACCTCTAGTGCTTGGAGGTGA

Protein sequence

>MsG0580029906.01.T01

MSYDSSMFSIEPIQNLDSYCFLQNENLKNYSSSDNGSHSTYPSFQALEQTLESSNNSPVSKLQSKSYTFTSRNSLEIINDSLENESCLTHNQDDLWHKIRELENAMLGHDAADMLDIYNDTVIIQQESDPLLLEAEKWNKMIEMISRGDLKEILFTCAKAISENDMETAEWLMSELSKMVSVSGNPIQRLGAYMLEALVARIASSGSIIYKSLKCKEPITATSKELLSHMHVLYEICPYLKFGYMSANGVIAEALKDESEVHIIDFQINQGIQWMSLIQALAGKPGGPPKIRITGFDDSTSAYARGGGLGIVGERLSKLAESYNVAFEFHAIGASPSEVRLEDLELRRGEAIAVNFAMMLHHVPDEDVHGGKNHRDRLVRLAKCLSPKVVTLVEQESNTNELPFFARFVETMNYYFAVFESIDVALPREHRERINVEQHCLAREVVNLVACEGAERVERHEVLKKWRSCFTMAGFTPYPLSSYINCSIQNLLENYQGHYTLQEKDGALYLGWMNQPLITSSAWR*