AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048300.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048300.01.T01 MTR_8g089360 98.497 599 9 0 1 599 1 599 0.0 1204
MsG0080048300.01.T01 MTR_8g089360 98.797 582 7 0 18 599 1 582 0.0 1173
MsG0080048300.01.T01 MTR_8g089320 74.042 574 145 3 26 595 21 594 0.0 855
MsG0080048300.01.T01 MTR_1g030660 61.034 580 220 3 18 596 10 584 0.0 717
MsG0080048300.01.T01 MTR_2g035430 56.743 571 245 2 25 594 20 589 0.0 674
MsG0080048300.01.T01 MTR_8g089340 72.931 447 116 2 154 595 1 447 0.0 619
MsG0080048300.01.T01 MTR_8g461380 50.268 559 274 3 25 580 27 584 0.0 550
MsG0080048300.01.T01 MTR_1g111740 42.660 579 307 6 33 596 6 574 5.89e-153 452
MsG0080048300.01.T01 MTR_4g099270 39.817 545 313 6 65 598 10 550 5.85e-123 374
MsG0080048300.01.T01 MTR_4g099270 44.828 377 204 2 37 409 3 379 3.35e-103 318
MsG0080048300.01.T01 MTR_4g099270 37.330 442 262 6 168 598 1 438 4.07e-89 283
MsG0080048300.01.T01 MTR_4g099270 43.607 305 168 2 37 337 3 307 4.12e-78 250
MsG0080048300.01.T01 MTR_7g086510 35.025 394 249 2 65 451 26 419 2.38e-70 239
MsG0080048300.01.T01 MTR_6g027630 34.204 421 265 4 40 451 7 424 2.78e-69 235
MsG0080048300.01.T01 MTR_6g027630 34.204 421 265 4 40 451 7 424 9.06e-69 234
MsG0080048300.01.T01 MTR_7g007850 32.083 533 342 12 59 576 29 556 5.72e-68 231
MsG0080048300.01.T01 MTR_6g027680 34.236 406 254 4 55 451 26 427 1.21e-67 230
MsG0080048300.01.T01 MTR_7g086610 33.582 402 257 3 57 451 15 413 9.61e-67 229
MsG0080048300.01.T01 MTR_6g027660 33.985 409 251 6 55 451 24 425 3.50e-66 228
MsG0080048300.01.T01 MTR_7g007850 29.196 572 337 10 59 576 29 586 6.82e-66 226
MsG0080048300.01.T01 MTR_7g007850 35.411 401 250 5 59 451 29 428 3.42e-65 222
MsG0080048300.01.T01 MTR_7g007850 35.411 401 250 5 59 451 29 428 9.65e-65 221
MsG0080048300.01.T01 MTR_6g027650 33.763 388 248 3 73 451 30 417 1.33e-64 223
MsG0080048300.01.T01 MTR_6g034535 46.320 231 112 4 366 595 89 308 1.75e-63 212
MsG0080048300.01.T01 MTR_6g034535 44.792 96 28 1 103 198 19 89 3.79e-16 80.1
MsG0080048300.01.T01 MTR_8g089342 75.214 117 29 0 27 143 23 139 1.02e-57 190
MsG0080048300.01.T01 MTR_6g027630 32.840 338 220 2 121 451 2 339 4.39e-51 185
MsG0080048300.01.T01 MTR_6g027670 31.646 158 108 0 294 451 1 158 1.72e-22 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048300.01.T01 AT4G21120 65.278 576 199 1 23 597 16 591 0.0 774
MsG0080048300.01.T01 AT2G34960 58.047 553 229 2 25 575 12 563 0.0 661
MsG0080048300.01.T01 AT4G21120 62.585 441 164 1 158 597 1 441 0.0 568
MsG0080048300.01.T01 AT1G17120 50.998 551 268 2 26 575 30 579 0.0 557
MsG0080048300.01.T01 AT5G04770 40.799 576 310 6 35 587 15 582 1.95e-145 433
MsG0080048300.01.T01 AT3G10600 41.536 573 301 6 32 578 11 575 1.33e-141 423
MsG0080048300.01.T01 AT5G04770 44.010 384 205 2 35 408 15 398 1.97e-107 329
MsG0080048300.01.T01 AT3G10600 39.588 437 230 6 168 578 1 429 7.66e-99 308
MsG0080048300.01.T01 AT5G04770 38.600 443 241 6 168 587 1 435 2.71e-97 304
MsG0080048300.01.T01 AT3G03720 32.587 402 264 2 57 451 4 405 2.91e-69 235
MsG0080048300.01.T01 AT5G36940 32.924 407 262 4 55 451 5 410 4.28e-68 233
MsG0080048300.01.T01 AT1G58030 31.002 429 279 4 30 451 3 421 2.35e-65 226
MsG0080048300.01.T01 AT1G05940 30.037 546 328 10 69 578 40 567 6.35e-63 218
MsG0080048300.01.T01 AT1G05940 29.724 508 309 8 69 546 40 529 1.59e-59 207
MsG0080048300.01.T01 AT1G05940 31.221 426 280 5 69 482 40 464 4.33e-59 206
MsG0080048300.01.T01 AT1G05940 28.821 458 274 8 156 578 9 449 7.15e-43 160

Find 119 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAAAGTTTAGGTGATTA+TGG 0.183327 contig26end:-11874 MsG0080048300.01.T01:CDS
GCTATAAATATATTCCTTCT+TGG 0.203938 contig26end:-9151 MsG0080048300.01.T01:CDS
TGAATGGTTGGGATCTTATT+TGG 0.215470 contig26end:-11735 MsG0080048300.01.T01:CDS
AAACTAAATGCAACCGAAAA+TGG 0.229991 contig26end:+9727 None:intergenic
ATTCTATCTTTCAACCTAAA+TGG 0.233964 contig26end:+11832 None:intergenic
CACAATATGAACCCTGATTA+TGG 0.260743 contig26end:-10147 MsG0080048300.01.T01:CDS
TCAAAGTCTTCTTCATTTGA+TGG 0.269199 contig26end:+11755 None:intergenic
TGCATACTTAAGAGTAGAAT+TGG 0.276540 contig26end:-10307 MsG0080048300.01.T01:CDS
GTTGCAGAGGGTGGCAAAAT+AGG 0.283118 contig26end:+10200 None:intergenic
TTGATAAAGATTCATATATA+AGG 0.285317 contig26end:-9123 MsG0080048300.01.T01:CDS
ATACTCCTTGAATATGTTAT+AGG 0.292518 contig26end:-10252 MsG0080048300.01.T01:CDS
TATGCTTCATTTGCTCCTTT+TGG 0.292689 contig26end:-9961 MsG0080048300.01.T01:CDS
CATTTATGAAAACACCATTT+AGG 0.293778 contig26end:-11846 MsG0080048300.01.T01:CDS
GTTGAAGAGAGAAGAGATTC+TGG 0.301802 contig26end:+10062 None:intergenic
GTGCGTCGTTATTATTCAAC+TGG 0.304117 contig26end:-9406 MsG0080048300.01.T01:CDS
AAGCAAAGAAACCTAAAGTT+TGG 0.310693 contig26end:-9213 MsG0080048300.01.T01:CDS
GAAGATTCATTCAAAAGTTT+AGG 0.314300 contig26end:-11883 MsG0080048300.01.T01:CDS
AAAGATTCATATATAAGGTT+TGG 0.336683 contig26end:-9118 MsG0080048300.01.T01:CDS
ATCGGCGCCGTCGTCGGTTC+CGG 0.340214 contig26end:-11706 MsG0080048300.01.T01:CDS
ATGAGGGCTATAACAGCAAT+AGG 0.342880 contig26end:+10114 None:intergenic
GACATTCCTATTGGTCTTGT+AGG 0.349217 contig26end:-9838 MsG0080048300.01.T01:CDS
TTTCGGGGTTGGCGTTGATT+AGG 0.363441 contig26end:+9986 None:intergenic
ATTGCCTTCATCATCATTGT+TGG 0.370746 contig26end:-10009 MsG0080048300.01.T01:CDS
GATCTTATTTGGTTCGGAAT+CGG 0.376968 contig26end:-11724 MsG0080048300.01.T01:CDS
AGCAAAGAAACCTAAAGTTT+GGG 0.379219 contig26end:-9212 MsG0080048300.01.T01:CDS
AAGATTCATATATAAGGTTT+GGG 0.381982 contig26end:-9117 MsG0080048300.01.T01:CDS
GGGTCAAGATGACCATAATC+AGG 0.382582 contig26end:+10135 None:intergenic
ATAAGGTTTGGGATGTGGTC+AGG 0.401357 contig26end:-9106 MsG0080048300.01.T01:CDS
TGTTGCATTGGGAGCATTGA+AGG 0.418790 contig26end:-9677 MsG0080048300.01.T01:CDS
GCTCTTGTTCATGAGAAAAC+CGG 0.418847 contig26end:-9565 MsG0080048300.01.T01:CDS
CAAGGGTGGCGATGGCTATG+AGG 0.419014 contig26end:+10097 None:intergenic
GGTTGGGATCTTATTTGGTT+CGG 0.419604 contig26end:-11730 MsG0080048300.01.T01:CDS
TAAGTGTTGAAATCGACAAT+AGG 0.420519 contig26end:+9461 None:intergenic
GGCTAAATACATTGTTGCAT+TGG 0.420648 contig26end:-9689 MsG0080048300.01.T01:CDS
GGTTGAAAGCAGACATACTA+TGG 0.423044 contig26end:-9023 MsG0080048300.01.T01:CDS
CTTTGATGCAGTGTCAACTA+TGG 0.425840 contig26end:-9887 MsG0080048300.01.T01:CDS
GCTAAATACATTGTTGCATT+GGG 0.433060 contig26end:-9688 MsG0080048300.01.T01:CDS
TGAAGAAGACTTTGAATGGT+TGG 0.433470 contig26end:-11747 MsG0080048300.01.T01:CDS
ATTGATCCTACAAGACCAAT+AGG 0.439236 contig26end:+9832 None:intergenic
CATATATAAGGTTTGGGATG+TGG 0.442523 contig26end:-9111 MsG0080048300.01.T01:CDS
CAAATGAAGAAGACTTTGAA+TGG 0.443211 contig26end:-11751 MsG0080048300.01.T01:CDS
TATTGGTCTTGTAGGATCAA+TGG 0.444727 contig26end:-9830 MsG0080048300.01.T01:CDS
GAAGAAGACTTTGAATGGTT+GGG 0.451214 contig26end:-11746 MsG0080048300.01.T01:CDS
CACATGGAGAATGGGATAAA+CGG 0.453156 contig26end:+12853 None:intergenic
AGTAGAATTGGGAGACTTTG+TGG 0.458556 contig26end:-10295 MsG0080048300.01.T01:CDS
CTGCTCCTATAACATATTCA+AGG 0.458801 contig26end:+10247 None:intergenic
ATTAACACCCACATGGAGAA+TGG 0.460480 contig26end:+12844 None:intergenic
GTACTCACATGATGCCTCCT+TGG 0.466399 contig26end:-9591 MsG0080048300.01.T01:CDS
TTTGTGGCCTTCATAGCTGC+TGG 0.472452 contig26end:-10279 MsG0080048300.01.T01:CDS
CTCTTGTTCATGAGAAAACC+GGG 0.472524 contig26end:-9564 MsG0080048300.01.T01:CDS
AAATGGTGCATTGACATCAA+TGG 0.475079 contig26end:+9744 None:intergenic
CCTGGCAGAGACATTCCTAT+TGG 0.477268 contig26end:-9847 MsG0080048300.01.T01:CDS
GCATACTTAAGAGTAGAATT+GGG 0.485267 contig26end:-10306 MsG0080048300.01.T01:CDS
TATGTTTCCAGCAGCTATGA+AGG 0.486802 contig26end:+10272 None:intergenic
TTCGGAATCGGCGCCGTCGT+CGG 0.489934 contig26end:-11712 MsG0080048300.01.T01:CDS
TGAGTGATGGTTGGATTGGA+TGG 0.492403 contig26end:-9294 MsG0080048300.01.T01:CDS
CCAATAGGAATGTCTCTGCC+AGG 0.497538 contig26end:+9847 None:intergenic
CAGCAGCCGTAGCTCGATCA+TGG 0.497728 contig26end:-10227 MsG0080048300.01.T01:CDS
ACTTTAGGTTTCTTTGCTTG+TGG 0.499703 contig26end:+9217 None:intergenic
CTTGAAGCTCGTGAGGAGGC+TGG 0.502388 contig26end:-11664 MsG0080048300.01.T01:CDS
TAAGGTTTGGGATGTGGTCA+GGG 0.502438 contig26end:-9105 MsG0080048300.01.T01:CDS
ACTATTATACGAAAATCGTT+AGG 0.506095 contig26end:+10171 None:intergenic
TTAACACCCACATGGAGAAT+GGG 0.510395 contig26end:+12845 None:intergenic
CATAATCAGGGTTCATATTG+TGG 0.510899 contig26end:+10148 None:intergenic
GAAGGTAACCAAGGAACTAA+AGG 0.517947 contig26end:+9184 None:intergenic
AAAAGATTACATGGAGATTG+TGG 0.522533 contig26end:-11797 MsG0080048300.01.T01:CDS
AAAACACCTCTGGTACCAAA+AGG 0.527195 contig26end:+9946 None:intergenic
TGTAGCATTCAAAGGTGTCC+CGG 0.529346 contig26end:+9546 None:intergenic
TACACGATCAAAAGATTACA+TGG 0.530851 contig26end:-11806 MsG0080048300.01.T01:CDS
ATAGAGCAATGAGTGATGGT+TGG 0.531056 contig26end:-9303 MsG0080048300.01.T01:CDS
TTCTGGTGCTTAAGACTGCA+AGG 0.531934 contig26end:+10079 None:intergenic
AACAAGAAGGCAAATACCTC+CGG 0.540070 contig26end:+9240 None:intergenic
AGAGATTAACAATGTTGAAG+AGG 0.543356 contig26end:-8984 MsG0080048300.01.T01:CDS
TTTGAATGCTACAATTGCAA+TGG 0.543834 contig26end:-9536 MsG0080048300.01.T01:CDS
GCAATGAGTGATGGTTGGAT+TGG 0.544767 contig26end:-9298 MsG0080048300.01.T01:CDS
GAAAATGCCGGAACCGACGA+CGG 0.546498 contig26end:+11699 None:intergenic
GCTGTGGAAATTCCTGTCGC+AGG 0.549047 contig26end:-11568 MsG0080048300.01.T01:intron
TAAGACTGCAAGGGTGGCGA+TGG 0.550212 contig26end:+10089 None:intergenic
TGCGTCGTTATTATTCAACT+GGG 0.550353 contig26end:-9405 MsG0080048300.01.T01:CDS
TTGATTATTGGATCTTCATG+TGG 0.550908 contig26end:-9337 MsG0080048300.01.T01:CDS
GACAACATTAACCAACAAAA+CGG 0.553927 contig26end:+9645 None:intergenic
ATTGCAATTGTAGCATTCAA+AGG 0.554677 contig26end:+9538 None:intergenic
CAGTGTAATAAACCTGCGAC+AGG 0.557065 contig26end:+11556 None:intergenic
GCATACGACAAAACAACGGC+AGG 0.559328 contig26end:+11640 None:intergenic
CACGGGTCTTGAAGCTCGTG+AGG 0.559748 contig26end:-11671 MsG0080048300.01.T01:CDS
GTTTATAGAGCAATGAGTGA+TGG 0.561915 contig26end:-9307 MsG0080048300.01.T01:CDS
TGCTTCTTATGATGCATCAA+AGG 0.567964 contig26end:-9047 MsG0080048300.01.T01:CDS
TGCAGTGTCAACTATGGCCG+AGG 0.568528 contig26end:-9881 MsG0080048300.01.T01:CDS
GTTGCATTGGGAGCATTGAA+GGG 0.572087 contig26end:-9676 MsG0080048300.01.T01:CDS
AAGGGTGGCGATGGCTATGA+GGG 0.572955 contig26end:+10098 None:intergenic
CTTTATCAATAGATCCAAGA+AGG 0.573540 contig26end:+9137 None:intergenic
TAGGCCAACAATGATGATGA+AGG 0.578906 contig26end:+10005 None:intergenic
TGAGGGCTATAACAGCAATA+GGG 0.590082 contig26end:+10115 None:intergenic
TCTTTGCTTGTGGAACAAGA+AGG 0.591771 contig26end:+9227 None:intergenic
AATGGTTACAATAACTTCCG+TGG 0.596952 contig26end:-9518 MsG0080048300.01.T01:CDS
GCAGAGGGTGGCAAAATAGG+AGG 0.598124 contig26end:+10203 None:intergenic
AATTATATGACACAGGAGAT+GGG 0.599472 contig26end:-11943 MsG0080048300.01.T01:intron
GCAAAGAAACCTAAAGTTTG+GGG 0.603737 contig26end:-9211 MsG0080048300.01.T01:CDS
GGAGGTCCATGATCGAGCTA+CGG 0.611878 contig26end:+10221 None:intergenic
GGTCAAGATGACCATAATCA+GGG 0.614215 contig26end:+10136 None:intergenic
GGGTCTTGAAGCTCGTGAGG+AGG 0.615839 contig26end:-11668 MsG0080048300.01.T01:CDS
ACCCGTGAGAACGAAAATGC+CGG 0.617637 contig26end:+11687 None:intergenic
CTGTTACACTGAGTTCGCTG+TGG 0.620747 contig26end:-11584 MsG0080048300.01.T01:CDS
CAATAGGAATGTCTCTGCCA+GGG 0.621672 contig26end:+9848 None:intergenic
TTCTTATGATGCATCAAAGG+AGG 0.629051 contig26end:-9044 MsG0080048300.01.T01:CDS
AGCAAAGAAAAGAACAGCTG+AGG 0.637960 contig26end:+9918 None:intergenic
GAGTGATGGTTGGATTGGAT+GGG 0.641500 contig26end:-9293 MsG0080048300.01.T01:CDS
GGTGCTTAAGACTGCAAGGG+TGG 0.641563 contig26end:+10083 None:intergenic
TGGAGAATGGGATAAACGGA+AGG 0.649782 contig26end:+12857 None:intergenic
TCTGGTGCTTAAGACTGCAA+GGG 0.651168 contig26end:+10080 None:intergenic
CAAAGAAACCTAAAGTTTGG+GGG 0.656196 contig26end:-9210 MsG0080048300.01.T01:CDS
GACAGCATACGACAAAACAA+CGG 0.658241 contig26end:+11636 None:intergenic
CCGGTTCCTAAAAGCCACAA+TGG 0.660149 contig26end:+9259 None:intergenic
AAAGAAACCTAAAGTTTGGG+GGG 0.664460 contig26end:-9209 MsG0080048300.01.T01:CDS
AATGTGAGTTAAATAACGTG+AGG 0.693226 contig26end:+9618 None:intergenic
GCGTCGTTATTATTCAACTG+GGG 0.713208 contig26end:-9404 MsG0080048300.01.T01:CDS
TCATGAACAAGAGCAAACCA+AGG 0.716329 contig26end:+9574 None:intergenic
TGAACAAGAGCAAACCAAGG+AGG 0.732183 contig26end:+9577 None:intergenic
GAGATGGGTACAGAAAACAG+TGG 0.787629 contig26end:-11928 MsG0080048300.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATTTCCTAAATAA+AGG + contig26end:10385-10404 None:intergenic 10.0%
!!! ACAACTTTATAAATTTTAAA+AGG + contig26end:9558-9577 None:intergenic 10.0%
!!! TTAATTTTTTTATAGTGTTA+TGG - contig26end:11319-11338 MsG0080048300.01.T01:intron 10.0%
!! AAAGATTAAAATTAAATTGG+TGG - contig26end:9588-9607 MsG0080048300.01.T01:CDS 15.0%
!! TACAATATGTATAGAAAAAT+AGG + contig26end:11248-11267 None:intergenic 15.0%
!! TATGTATGTAAACAAATATT+TGG + contig26end:9695-9714 None:intergenic 15.0%
!! TTGATAAAGATTCATATATA+AGG - contig26end:12728-12747 MsG0080048300.01.T01:intron 15.0%
!!! TATTTTTTATTGATATAGTC+AGG + contig26end:10901-10920 None:intergenic 15.0%
!!! TGAATATTATACCTTTATTT+AGG - contig26end:10371-10390 MsG0080048300.01.T01:intron 15.0%
!!! TGAGTAATTAATCATTTTTT+TGG + contig26end:10753-10772 None:intergenic 15.0%
!!! TTTGTGATTTGTATTTTTTA+AGG - contig26end:10402-10421 MsG0080048300.01.T01:intron 15.0%
!! AAAGATTCATATATAAGGTT+TGG - contig26end:12733-12752 MsG0080048300.01.T01:intron 20.0%
!! AAATCAACTTATGTAGAAAA+TGG + contig26end:11444-11463 None:intergenic 20.0%
!! AACTACAATATTCCTATAAA+TGG + contig26end:9745-9764 None:intergenic 20.0%
!! AAGATTCATATATAAGGTTT+GGG - contig26end:12734-12753 MsG0080048300.01.T01:intron 20.0%
!! AAGTTAAACCAAATTGAAAA+CGG + contig26end:9127-9146 None:intergenic 20.0%
!! AATCAACTTATGTAGAAAAT+GGG + contig26end:11443-11462 None:intergenic 20.0%
!! ATTAATTACTCATGAATTGA+AGG - contig26end:10761-10780 MsG0080048300.01.T01:intron 20.0%
!! CAAATTAAATTATATGACAC+AGG - contig26end:9901-9920 MsG0080048300.01.T01:CDS 20.0%
!! TACTTTACAAAAATTATCGT+TGG - contig26end:9223-9242 MsG0080048300.01.T01:CDS 20.0%
!! TATCTCAAAAAATATTGACA+CGG - contig26end:9332-9351 MsG0080048300.01.T01:CDS 20.0%
!! TGTATTTCTTAAAGTTAGAA+GGG - contig26end:11264-11283 MsG0080048300.01.T01:intron 20.0%
!! TTGTATTTCTTAAAGTTAGA+AGG - contig26end:11263-11282 MsG0080048300.01.T01:intron 20.0%
!! TTTAATTGATGTTATTCGTA+CGG + contig26end:11003-11022 None:intergenic 20.0%
!! TTTATAGCAATAGAAAAAGA+AGG + contig26end:12688-12707 None:intergenic 20.0%
!!! ATTAATCATTTTTTTGGTAG+TGG + contig26end:10747-10766 None:intergenic 20.0%
!!! ATTTAACTTTTAAGGTAAGA+GGG + contig26end:11393-11412 None:intergenic 20.0%
!!! ATTTTCTACATAAGTTGATT+TGG - contig26end:11443-11462 MsG0080048300.01.T01:intron 20.0%
!!! TGTTTTAGAGTATGTTTTTA+AGG + contig26end:11067-11086 None:intergenic 20.0%
!!! TTAAAAGTATGTTTGAATAG+AGG - contig26end:10510-10529 MsG0080048300.01.T01:intron 20.0%
!!! TTGATTTACTATTTTCTCAT+TGG - contig26end:12775-12794 MsG0080048300.01.T01:intron 20.0%
!!! TTTTTATAGTGTTATGGTTA+TGG - contig26end:11325-11344 MsG0080048300.01.T01:intron 20.0%
! AAAAATGGTAGACCATTTAT+AGG - contig26end:9730-9749 MsG0080048300.01.T01:CDS 25.0%
! AAGTATAAACATGACTTTGT+TGG + contig26end:10925-10944 None:intergenic 25.0%
! ACTAGATTAATGCTATACAT+AGG - contig26end:9624-9643 MsG0080048300.01.T01:CDS 25.0%
! ACTATTATACGAAAATCGTT+AGG + contig26end:11683-11702 None:intergenic 25.0%
! ATACTCCTTGAATATGTTAT+AGG - contig26end:11599-11618 MsG0080048300.01.T01:CDS 25.0%
! ATTCTATCTTTCAACCTAAA+TGG + contig26end:10022-10041 None:intergenic 25.0%
! CATTGTGAACAAGAATAAAA+AGG + contig26end:9308-9327 None:intergenic 25.0%
! CATTTATGAAAACACCATTT+AGG - contig26end:10005-10024 MsG0080048300.01.T01:CDS 25.0%
! CTAACATTACCCTAAAAAAA+TGG - contig26end:9715-9734 MsG0080048300.01.T01:CDS 25.0%
! CTAGATTAATGCTATACATA+GGG - contig26end:9625-9644 MsG0080048300.01.T01:CDS 25.0%
! GAAGATTCATTCAAAAGTTT+AGG - contig26end:9968-9987 MsG0080048300.01.T01:CDS 25.0%
! GCTATAAATATATTCCTTCT+TGG - contig26end:12700-12719 MsG0080048300.01.T01:intron 25.0%
! TGCATAAAATATGCAAAGTT+CGG - contig26end:10707-10726 MsG0080048300.01.T01:intron 25.0%
! TGTGTAATTTATACTAACCT+AGG + contig26end:9772-9791 None:intergenic 25.0%
! TTATTGTGTTTGCATGTAAA+AGG - contig26end:9059-9078 MsG0080048300.01.T01:CDS 25.0%
! TTCAAAAGTTTAGGTGATTA+TGG - contig26end:9977-9996 MsG0080048300.01.T01:CDS 25.0%
!! AAACTTTTGAATGAATCTTC+TGG + contig26end:9968-9987 None:intergenic 25.0%
!! AACTTTTGAATGAATCTTCT+GGG + contig26end:9967-9986 None:intergenic 25.0%
!! TTTCTTTACCGTTTTCAATT+TGG - contig26end:9116-9135 MsG0080048300.01.T01:CDS 25.0%
!! TTTGAATAGAGGATTTTGAA+GGG - contig26end:10521-10540 MsG0080048300.01.T01:intron 25.0%
!! TTTTGTAAACACAACAATCA+TGG - contig26end:10816-10835 MsG0080048300.01.T01:intron 25.0%
!! TTTTTATTGATATAGTCAGG+CGG + contig26end:10898-10917 None:intergenic 25.0%
!!! AAATGGTCTACCATTTTTTT+AGG + contig26end:9728-9747 None:intergenic 25.0%
!!! AATGGTCTACCATTTTTTTA+GGG + contig26end:9727-9746 None:intergenic 25.0%
!!! GATTTAACTTTTAAGGTAAG+AGG + contig26end:11394-11413 None:intergenic 25.0%
!!! GTATGTGTTGTTTTGATTAT+TGG - contig26end:12502-12521 MsG0080048300.01.T01:intron 25.0%
!!! TATGTTTTTAAGGTGAGTTT+TGG + contig26end:11057-11076 None:intergenic 25.0%
!!! TGCATTGGATTTAACTTTTA+AGG + contig26end:11401-11420 None:intergenic 25.0%
!!! TTCAATTTGGTTTAACTTGT+AGG - contig26end:9129-9148 MsG0080048300.01.T01:CDS 25.0%
AAAAGATTACATGGAGATTG+TGG - contig26end:10054-10073 MsG0080048300.01.T01:CDS 30.0%
AAACCAATCTTAAGAGTCTA+GGG + contig26end:9868-9887 None:intergenic 30.0%
AAACTAAATGCAACCGAAAA+TGG + contig26end:12127-12146 None:intergenic 30.0%
AAATTATATGACACAGGAGA+TGG - contig26end:9907-9926 MsG0080048300.01.T01:CDS 30.0%
AAGCAAAGAAACCTAAAGTT+TGG - contig26end:12638-12657 MsG0080048300.01.T01:intron 30.0%
AATGTGAGTTAAATAACGTG+AGG + contig26end:12236-12255 None:intergenic 30.0%
AATTATATGACACAGGAGAT+GGG - contig26end:9908-9927 MsG0080048300.01.T01:CDS 30.0%
AGAGATTAACAATGTTGAAG+AGG - contig26end:12867-12886 MsG0080048300.01.T01:CDS 30.0%
AGATTGTTTCGTGAAACAAT+CGG - contig26end:9502-9521 MsG0080048300.01.T01:CDS 30.0%
AGCAAAGAAACCTAAAGTTT+GGG - contig26end:12639-12658 MsG0080048300.01.T01:intron 30.0%
ATACAGTATATAGGTAGCAA+AGG - contig26end:11287-11306 MsG0080048300.01.T01:intron 30.0%
ATAGAAAAAGAAGGTAACCA+AGG + contig26end:12679-12698 None:intergenic 30.0%
ATGATATGCAATCACAAGTA+AGG + contig26end:11207-11226 None:intergenic 30.0%
ATTGCAATTGTAGCATTCAA+AGG + contig26end:12316-12335 None:intergenic 30.0%
CAAATGAAGAAGACTTTGAA+TGG - contig26end:10100-10119 MsG0080048300.01.T01:CDS 30.0%
CATAAAATATGCAAAGTTCG+GGG - contig26end:10709-10728 MsG0080048300.01.T01:intron 30.0%
CTTTATCAATAGATCCAAGA+AGG + contig26end:12717-12736 None:intergenic 30.0%
GAATATTGTAGTTGTATCCT+AGG - contig26end:9752-9771 MsG0080048300.01.T01:CDS 30.0%
GACAACATTAACCAACAAAA+CGG + contig26end:12209-12228 None:intergenic 30.0%
GATGCATATAGTTCATTGTA+AGG + contig26end:10961-10980 None:intergenic 30.0%
GCATAAAATATGCAAAGTTC+GGG - contig26end:10708-10727 MsG0080048300.01.T01:intron 30.0%
GCATACTTAAGAGTAGAATT+GGG - contig26end:11545-11564 MsG0080048300.01.T01:intron 30.0%
GCTAAATACATTGTTGCATT+GGG - contig26end:12163-12182 MsG0080048300.01.T01:intron 30.0%
GTCATGTTTATACTTAAAGC+TGG - contig26end:10930-10949 MsG0080048300.01.T01:intron 30.0%
GTGTTTACAAAAAGACTTAG+CGG + contig26end:10808-10827 None:intergenic 30.0%
TAAAAAGATTAACACCCACA+TGG + contig26end:9017-9036 None:intergenic 30.0%
TAAACCAATCTTAAGAGTCT+AGG + contig26end:9869-9888 None:intergenic 30.0%
TACACGATCAAAAGATTACA+TGG - contig26end:10045-10064 MsG0080048300.01.T01:CDS 30.0%
TCAAAGTCTTCTTCATTTGA+TGG + contig26end:10099-10118 None:intergenic 30.0%
TCTTGTGATTAAGTATGCAT+TGG + contig26end:11416-11435 None:intergenic 30.0%
TGAGACTAATTGAGTTATGT+GGG - contig26end:11492-11511 MsG0080048300.01.T01:intron 30.0%
TGCATACTTAAGAGTAGAAT+TGG - contig26end:11544-11563 MsG0080048300.01.T01:intron 30.0%
TGTCCAATAAAATTGTTTGC+TGG - contig26end:9455-9474 MsG0080048300.01.T01:CDS 30.0%
TTAGAAGGGATACAGTATAT+AGG - contig26end:11278-11297 MsG0080048300.01.T01:intron 30.0%
TTGAGACTAATTGAGTTATG+TGG - contig26end:11491-11510 MsG0080048300.01.T01:intron 30.0%
TTGATTATTGGATCTTCATG+TGG - contig26end:12514-12533 MsG0080048300.01.T01:intron 30.0%
TTTGAATGCTACAATTGCAA+TGG - contig26end:12315-12334 MsG0080048300.01.T01:intron 30.0%
! AATTAATTTTCGCTAGCGTT+CGG + contig26end:9436-9455 None:intergenic 30.0%
! AGCAAATGAAGCATAGTTTT+CGG + contig26end:11885-11904 None:intergenic 30.0%
! ATTTTCGTTCTTGTAGCAAT+TGG - contig26end:12415-12434 MsG0080048300.01.T01:intron 30.0%
! GTTCTTTTCTTTGCTTACAT+AGG - contig26end:11941-11960 MsG0080048300.01.T01:intron 30.0%
! GTTTGAATAGAGGATTTTGA+AGG - contig26end:10520-10539 MsG0080048300.01.T01:intron 30.0%
! TTTTCGTTCTTGTAGCAATT+GGG - contig26end:12416-12435 MsG0080048300.01.T01:intron 30.0%
!! CTCTTAAGATTGGTTTAAAC+TGG - contig26end:9872-9891 MsG0080048300.01.T01:CDS 30.0%
!! GTTATTGTTTGTTATCAGGT+GGG - contig26end:11516-11535 MsG0080048300.01.T01:intron 30.0%
!! GTTTTGTTGGTTAATGTTGT+CGG - contig26end:12208-12227 MsG0080048300.01.T01:intron 30.0%
!! TAAGTGTTGAAATCGACAAT+AGG + contig26end:12393-12412 None:intergenic 30.0%
!! TGTTATTGTTTGTTATCAGG+TGG - contig26end:11515-11534 MsG0080048300.01.T01:intron 30.0%
!! TTGGTTTAACTTGTAGGTAT+TGG - contig26end:9135-9154 MsG0080048300.01.T01:CDS 30.0%
!!! TGCATTTAGTTTTGTTGGAT+GGG - contig26end:12135-12154 MsG0080048300.01.T01:intron 30.0%
!!! TTGCATTTAGTTTTGTTGGA+TGG - contig26end:12134-12153 MsG0080048300.01.T01:intron 30.0%
!!! TTTTTAAGGTGAGTTTTGGA+GGG + contig26end:11053-11072 None:intergenic 30.0%
AAAGAAACCTAAAGTTTGGG+GGG - contig26end:12642-12661 MsG0080048300.01.T01:intron 35.0%
AACCAATCTTAAGAGTCTAG+GGG + contig26end:9867-9886 None:intergenic 35.0%
AATGGTTACAATAACTTCCG+TGG - contig26end:12333-12352 MsG0080048300.01.T01:intron 35.0%
ACTCATGAATTGAAGGTAAG+CGG - contig26end:10768-10787 MsG0080048300.01.T01:intron 35.0%
ATCAGTGAAAAATGCAACCA+CGG + contig26end:12353-12372 None:intergenic 35.0%
ATTGATCCTACAAGACCAAT+AGG + contig26end:12022-12041 None:intergenic 35.0%
ATTGCCTTCATCATCATTGT+TGG - contig26end:11842-11861 MsG0080048300.01.T01:CDS 35.0%
CAAAGAAACCTAAAGTTTGG+GGG - contig26end:12641-12660 MsG0080048300.01.T01:intron 35.0%
CACAATATGAACCCTGATTA+TGG - contig26end:11704-11723 MsG0080048300.01.T01:CDS 35.0%
CATAATCAGGGTTCATATTG+TGG + contig26end:11706-11725 None:intergenic 35.0%
CATGCAAACACAATAAACTC+AGG + contig26end:9055-9074 None:intergenic 35.0%
CGGTATGTCTGGATATATTT+AGG + contig26end:10983-11002 None:intergenic 35.0%
CTGCTCCTATAACATATTCA+AGG + contig26end:11607-11626 None:intergenic 35.0%
GAAGAAGACTTTGAATGGTT+GGG - contig26end:10105-10124 MsG0080048300.01.T01:CDS 35.0%
GATTAATGCTATACATAGGG+TGG - contig26end:9628-9647 MsG0080048300.01.T01:CDS 35.0%
GATTGTTTCGTGAAACAATC+GGG - contig26end:9503-9522 MsG0080048300.01.T01:CDS 35.0%
GCAAAGAAACCTAAAGTTTG+GGG - contig26end:12640-12659 MsG0080048300.01.T01:intron 35.0%
GGCTAAATACATTGTTGCAT+TGG - contig26end:12162-12181 MsG0080048300.01.T01:intron 35.0%
GTTTATAGAGCAATGAGTGA+TGG - contig26end:12544-12563 MsG0080048300.01.T01:intron 35.0%
TGAAGAAGACTTTGAATGGT+TGG - contig26end:10104-10123 MsG0080048300.01.T01:CDS 35.0%
TGAATGGTTGGGATCTTATT+TGG - contig26end:10116-10135 MsG0080048300.01.T01:CDS 35.0%
TGCGTCGTTATTATTCAACT+GGG - contig26end:12446-12465 MsG0080048300.01.T01:intron 35.0%
TGCTTCTTATGATGCATCAA+AGG - contig26end:12804-12823 MsG0080048300.01.T01:intron 35.0%
TTCTTATGATGCATCAAAGG+AGG - contig26end:12807-12826 MsG0080048300.01.T01:intron 35.0%
! AAATGGTGCATTGACATCAA+TGG + contig26end:12110-12129 None:intergenic 35.0%
! ACTTTAGGTTTCTTTGCTTG+TGG + contig26end:12637-12656 None:intergenic 35.0%
! ATTAATTTTCGCTAGCGTTC+GGG + contig26end:9435-9454 None:intergenic 35.0%
! CAAATGAAGCATAGTTTTCG+GGG + contig26end:11883-11902 None:intergenic 35.0%
! CATATATAAGGTTTGGGATG+TGG - contig26end:12740-12759 MsG0080048300.01.T01:intron 35.0%
! GCAAATGAAGCATAGTTTTC+GGG + contig26end:11884-11903 None:intergenic 35.0%
! GTTAGGATTTTTGTTGCAGA+GGG + contig26end:11666-11685 None:intergenic 35.0%
! TATGCTTCATTTGCTCCTTT+TGG - contig26end:11890-11909 MsG0080048300.01.T01:CDS 35.0%
! TGATGTCAATGCACCATTTT+CGG - contig26end:12111-12130 MsG0080048300.01.T01:intron 35.0%
! TGGCCAGCAAACAATTTTAT+TGG + contig26end:9461-9480 None:intergenic 35.0%
!! GATCTTATTTGGTTCGGAAT+CGG - contig26end:10127-10146 MsG0080048300.01.T01:CDS 35.0%
!! GGGTGTTATTGTTTGTTATC+AGG - contig26end:11512-11531 MsG0080048300.01.T01:intron 35.0%
!! TATTGGTCTTGTAGGATCAA+TGG - contig26end:12021-12040 MsG0080048300.01.T01:intron 35.0%
!!! ATCATTTTTTTGGTAGTGGC+CGG + contig26end:10743-10762 None:intergenic 35.0%
!!! GCATTTAGTTTTGTTGGATG+GGG - contig26end:12136-12155 MsG0080048300.01.T01:intron 35.0%
!!! GTTTTTAAGGTGAGTTTTGG+AGG + contig26end:11054-11073 None:intergenic 35.0%
!!! TCGGTTGCATTTAGTTTTGT+TGG - contig26end:12130-12149 MsG0080048300.01.T01:intron 35.0%
!!! TGGTTTTGTAGTTCTGCATA+AGG + contig26end:12090-12109 None:intergenic 35.0%
AAAACACCTCTGGTACCAAA+AGG + contig26end:11908-11927 None:intergenic 40.0%
AACAAGAAGGCAAATACCTC+CGG + contig26end:12614-12633 None:intergenic 40.0%
AGCAAAGAAAAGAACAGCTG+AGG + contig26end:11936-11955 None:intergenic 40.0%
AGTAGAATTGGGAGACTTTG+TGG - contig26end:11556-11575 MsG0080048300.01.T01:intron 40.0%
ATAGAGCAATGAGTGATGGT+TGG - contig26end:12548-12567 MsG0080048300.01.T01:intron 40.0%
ATGAGGGCTATAACAGCAAT+AGG + contig26end:11740-11759 None:intergenic 40.0%
ATTAACACCCACATGGAGAA+TGG + contig26end:9010-9029 None:intergenic 40.0%
CACAATAAACTCAGGATACG+TGG + contig26end:9047-9066 None:intergenic 40.0%
CACATGGAGAATGGGATAAA+CGG + contig26end:9001-9020 None:intergenic 40.0%
CTCATGAATTGAAGGTAAGC+GGG - contig26end:10769-10788 MsG0080048300.01.T01:intron 40.0%
CTCTTGTTCATGAGAAAACC+GGG - contig26end:12287-12306 MsG0080048300.01.T01:intron 40.0%
CTTTGATGCAGTGTCAACTA+TGG - contig26end:11964-11983 MsG0080048300.01.T01:intron 40.0%
GAAGGTAACCAAGGAACTAA+AGG + contig26end:12670-12689 None:intergenic 40.0%
GACAGCATACGACAAAACAA+CGG + contig26end:10218-10237 None:intergenic 40.0%
GCGTCGTTATTATTCAACTG+GGG - contig26end:12447-12466 MsG0080048300.01.T01:intron 40.0%
GCTCTTGTTCATGAGAAAAC+CGG - contig26end:12286-12305 MsG0080048300.01.T01:intron 40.0%
GGTCAAGATGACCATAATCA+GGG + contig26end:11718-11737 None:intergenic 40.0%
GGTTGAAAGCAGACATACTA+TGG - contig26end:12828-12847 MsG0080048300.01.T01:intron 40.0%
GTGCGTCGTTATTATTCAAC+TGG - contig26end:12445-12464 MsG0080048300.01.T01:intron 40.0%
GTTGAAGAGAGAAGAGATTC+TGG + contig26end:11792-11811 None:intergenic 40.0%
GTTTATCCCATTCTCCATGT+GGG - contig26end:9000-9019 MsG0080048300.01.T01:CDS 40.0%
TATGTTTCCAGCAGCTATGA+AGG + contig26end:11582-11601 None:intergenic 40.0%
TCATGAACAAGAGCAAACCA+AGG + contig26end:12280-12299 None:intergenic 40.0%
TCATGAATTGAAGGTAAGCG+GGG - contig26end:10770-10789 MsG0080048300.01.T01:intron 40.0%
TCTTTGCTTGTGGAACAAGA+AGG + contig26end:12627-12646 None:intergenic 40.0%
TGAGGGCTATAACAGCAATA+GGG + contig26end:11739-11758 None:intergenic 40.0%
TGTTATTCGTACGGTATGTC+TGG + contig26end:10994-11013 None:intergenic 40.0%
TTAACACCCACATGGAGAAT+GGG + contig26end:9009-9028 None:intergenic 40.0%
! AAATTGTTTGCTGGCCACAA+AGG - contig26end:9464-9483 MsG0080048300.01.T01:CDS 40.0%
! CGTTAGGATTTTTGTTGCAG+AGG + contig26end:11667-11686 None:intergenic 40.0%
! GGTTGGGATCTTATTTGGTT+CGG - contig26end:10121-10140 MsG0080048300.01.T01:CDS 40.0%
! TAGGCCAACAATGATGATGA+AGG + contig26end:11849-11868 None:intergenic 40.0%
!! GAATAGAGGATTTTGAAGGG+TGG - contig26end:10524-10543 MsG0080048300.01.T01:intron 40.0%
!! GACATTCCTATTGGTCTTGT+AGG - contig26end:12013-12032 MsG0080048300.01.T01:intron 40.0%
!! TGAGGCTTTAAAAACACCTC+TGG + contig26end:11918-11937 None:intergenic 40.0%
!!! TAGTTTTGTTGGATGGGGAT+GGG - contig26end:12141-12160 MsG0080048300.01.T01:intron 40.0%
!!! TCATTTTTTTGGTAGTGGCC+GGG + contig26end:10742-10761 None:intergenic 40.0%
!!! TTAGTTTTGTTGGATGGGGA+TGG - contig26end:12140-12159 MsG0080048300.01.T01:intron 40.0%
AAAACCAAGACCGCCAGAAA+GGG + contig26end:10874-10893 None:intergenic 45.0%
CAATAGGAATGTCTCTGCCA+GGG + contig26end:12006-12025 None:intergenic 45.0%
CAGTGTAATAAACCTGCGAC+AGG + contig26end:10298-10317 None:intergenic 45.0%
CGTTTATCCCATTCTCCATG+TGG - contig26end:8999-9018 MsG0080048300.01.T01:CDS 45.0%
CTCCCCTAGACTCTTAAGAT+TGG - contig26end:9862-9881 MsG0080048300.01.T01:CDS 45.0%
GAGATGGGTACAGAAAACAG+TGG - contig26end:9923-9942 MsG0080048300.01.T01:CDS 45.0%
GCAATGAGTGATGGTTGGAT+TGG - contig26end:12553-12572 MsG0080048300.01.T01:intron 45.0%
GGGTCAAGATGACCATAATC+AGG + contig26end:11719-11738 None:intergenic 45.0%
TCTGGTGCTTAAGACTGCAA+GGG + contig26end:11774-11793 None:intergenic 45.0%
TGAACAAGAGCAAACCAAGG+AGG + contig26end:12277-12296 None:intergenic 45.0%
TGAGCTTAGCTCAGTTGGTT+GGG - contig26end:10680-10699 MsG0080048300.01.T01:intron 45.0%
TGGAGAATGGGATAAACGGA+AGG + contig26end:8997-9016 None:intergenic 45.0%
TTCTGGTGCTTAAGACTGCA+AGG + contig26end:11775-11794 None:intergenic 45.0%
! AGGATTTTTGTTGCAGAGGG+TGG + contig26end:11663-11682 None:intergenic 45.0%
! ATAAGGTTTGGGATGTGGTC+AGG - contig26end:12745-12764 MsG0080048300.01.T01:intron 45.0%
! GAGTGATGGTTGGATTGGAT+GGG - contig26end:12558-12577 MsG0080048300.01.T01:intron 45.0%
! GTTTTGTCGTATGCTGTCTC+TGG - contig26end:10220-10239 MsG0080048300.01.T01:CDS 45.0%
! TAAGGTTTGGGATGTGGTCA+GGG - contig26end:12746-12765 MsG0080048300.01.T01:intron 45.0%
! TCAGCACCATTGTGGCTTTT+AGG - contig26end:12586-12605 MsG0080048300.01.T01:intron 45.0%
! TGAGTGATGGTTGGATTGGA+TGG - contig26end:12557-12576 MsG0080048300.01.T01:intron 45.0%
! TTCCGGCATTTTCGTTCTCA+CGG - contig26end:10162-10181 MsG0080048300.01.T01:CDS 45.0%
! TTTGCTCCTTTTGGTACCAG+AGG - contig26end:11899-11918 MsG0080048300.01.T01:CDS 45.0%
!! AAAGGTACCCCCCAAACTTT+AGG + contig26end:12652-12671 None:intergenic 45.0%
!! CCATTGTGGCTTTTAGGAAC+CGG - contig26end:12592-12611 MsG0080048300.01.T01:intron 45.0%
!! GTTGCATTGGGAGCATTGAA+GGG - contig26end:12175-12194 MsG0080048300.01.T01:intron 45.0%
!! TGAAGCATAGTTTTCGGGGT+TGG + contig26end:11879-11898 None:intergenic 45.0%
!! TGTAGCATTCAAAGGTGTCC+CGG + contig26end:12308-12327 None:intergenic 45.0%
!! TGTTGCATTGGGAGCATTGA+AGG - contig26end:12174-12193 MsG0080048300.01.T01:intron 45.0%
!!! CATTTTTTTGGTAGTGGCCG+GGG + contig26end:10741-10760 None:intergenic 45.0%
!!! GCCAGGGTTTTTAGTTTCCT+CGG + contig26end:11990-12009 None:intergenic 45.0%
!! TTTAAAGATTAAAATTAAAT+TGG - contig26end:9585-9604 MsG0080048300.01.T01:CDS 5.0%
!!! TATAAAATAATTTACATTTT+TGG - contig26end:11161-11180 MsG0080048300.01.T01:intron 5.0%
AAACCAAGACCGCCAGAAAG+GGG + contig26end:10873-10892 None:intergenic 50.0%
AAAGTTCGGGGTTCAAACCC+CGG - contig26end:10721-10740 MsG0080048300.01.T01:intron 50.0%
ACCCGTGAGAACGAAAATGC+CGG + contig26end:10167-10186 None:intergenic 50.0%
CAAAACCAAGACCGCCAGAA+AGG + contig26end:10875-10894 None:intergenic 50.0%
CCAATAGGAATGTCTCTGCC+AGG + contig26end:12007-12026 None:intergenic 50.0%
CCGGTTCCTAAAAGCCACAA+TGG + contig26end:12595-12614 None:intergenic 50.0%
CCTGGCAGAGACATTCCTAT+TGG - contig26end:12004-12023 MsG0080048300.01.T01:intron 50.0%
CTGTTACACTGAGTTCGCTG+TGG - contig26end:10267-10286 MsG0080048300.01.T01:CDS 50.0%
GCATACGACAAAACAACGGC+AGG + contig26end:10214-10233 None:intergenic 50.0%
GCCGAGGAAACTAAAAACCC+TGG - contig26end:11986-12005 MsG0080048300.01.T01:intron 50.0%
GTACTCACATGATGCCTCCT+TGG - contig26end:12260-12279 MsG0080048300.01.T01:intron 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG - contig26end:10679-10698 MsG0080048300.01.T01:intron 50.0%
GTTGCAGAGGGTGGCAAAAT+AGG + contig26end:11654-11673 None:intergenic 50.0%
TTTGTGGCCTTCATAGCTGC+TGG - contig26end:11572-11591 MsG0080048300.01.T01:CDS 50.0%
! GGGAATGACGACCGTTTTGT+TGG - contig26end:12195-12214 MsG0080048300.01.T01:intron 50.0%
! GGGCATTTTCAGCACCATTG+TGG - contig26end:12578-12597 MsG0080048300.01.T01:intron 50.0%
! GTGCTATGAGAGCATGTGTG+TGG + contig26end:9821-9840 None:intergenic 50.0%
! TCCGGCATTTTCGTTCTCAC+GGG - contig26end:10163-10182 MsG0080048300.01.T01:CDS 50.0%
! TTGTTTGCTGGCCACAAAGG+AGG - contig26end:9467-9486 MsG0080048300.01.T01:CDS 50.0%
!! TTGTGGCTTTTAGGAACCGG+AGG - contig26end:12595-12614 MsG0080048300.01.T01:intron 50.0%
!! TTTCGGGGTTGGCGTTGATT+AGG + contig26end:11868-11887 None:intergenic 50.0%
AAGGGTGGCGATGGCTATGA+GGG + contig26end:11756-11775 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + contig26end:10678-10697 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - contig26end:10675-10694 MsG0080048300.01.T01:intron 55.0%
GAAAATGCCGGAACCGACGA+CGG + contig26end:10155-10174 None:intergenic 55.0%
GCAGAGGGTGGCAAAATAGG+AGG + contig26end:11651-11670 None:intergenic 55.0%
GCTGTGGAAATTCCTGTCGC+AGG - contig26end:10283-10302 MsG0080048300.01.T01:CDS 55.0%
GGAGGTCCATGATCGAGCTA+CGG + contig26end:11633-11652 None:intergenic 55.0%
GGTGCTTAAGACTGCAAGGG+TGG + contig26end:11771-11790 None:intergenic 55.0%
TAAGACTGCAAGGGTGGCGA+TGG + contig26end:11765-11784 None:intergenic 55.0%
TGCAGTGTCAACTATGGCCG+AGG - contig26end:11970-11989 MsG0080048300.01.T01:intron 55.0%
TTTGCTGGCCACAAAGGAGG+TGG - contig26end:9470-9489 MsG0080048300.01.T01:CDS 55.0%
!! GGGGGGTACCTTTAGTTCCT+TGG - contig26end:12659-12678 MsG0080048300.01.T01:intron 55.0%
ATGCCCCACCACCTCCTTTG+TGG + contig26end:9481-9500 None:intergenic 60.0%
CAAGGGTGGCGATGGCTATG+AGG + contig26end:11757-11776 None:intergenic 60.0%
CACCTGTCTCCCCTTTCTGG+CGG - contig26end:10861-10880 MsG0080048300.01.T01:intron 60.0%
CACGGGTCTTGAAGCTCGTG+AGG - contig26end:10180-10199 MsG0080048300.01.T01:CDS 60.0%
CAGCAGCCGTAGCTCGATCA+TGG - contig26end:11624-11643 MsG0080048300.01.T01:CDS 60.0%
CTGGCCACAAAGGAGGTGGT+GGG - contig26end:9474-9493 MsG0080048300.01.T01:CDS 60.0%
CTTGAAGCTCGTGAGGAGGC+TGG - contig26end:10187-10206 MsG0080048300.01.T01:CDS 60.0%
GCCAGAAAGGGGAGACAGGT+GGG + contig26end:10862-10881 None:intergenic 60.0%
GGGTCTTGAAGCTCGTGAGG+AGG - contig26end:10183-10202 MsG0080048300.01.T01:CDS 60.0%
TCCCACCTGTCTCCCCTTTC+TGG - contig26end:10858-10877 MsG0080048300.01.T01:intron 60.0%
TGGCCACAAAGGAGGTGGTG+GGG - contig26end:9475-9494 MsG0080048300.01.T01:CDS 60.0%
! TCTCCCCTTTCTGGCGGTCT+TGG - contig26end:10867-10886 MsG0080048300.01.T01:intron 60.0%
CGCCAGAAAGGGGAGACAGG+TGG + contig26end:10863-10882 None:intergenic 65.0%
GACCGCCAGAAAGGGGAGAC+AGG + contig26end:10866-10885 None:intergenic 65.0%
GCTGGCCACAAAGGAGGTGG+TGG - contig26end:9473-9492 MsG0080048300.01.T01:CDS 65.0%
TTCGGAATCGGCGCCGTCGT+CGG - contig26end:10139-10158 MsG0080048300.01.T01:CDS 65.0%
!! ATCGGCGCCGTCGTCGGTTC+CGG - contig26end:10145-10164 MsG0080048300.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
contig26end gene 8970 12903 8970 ID=MsG0080048300.01;Name=MsG0080048300.01
contig26end mRNA 8970 12903 8970 ID=MsG0080048300.01.T01;Parent=MsG0080048300.01;Name=MsG0080048300.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|0.5|0.33|3|0|599
contig26end exon 12856 12903 12856 ID=MsG0080048300.01.T01:exon:22943;Parent=MsG0080048300.01.T01
contig26end exon 11569 11950 11569 ID=MsG0080048300.01.T01:exon:22944;Parent=MsG0080048300.01.T01
contig26end exon 8970 10339 8970 ID=MsG0080048300.01.T01:exon:22945;Parent=MsG0080048300.01.T01
contig26end CDS 12856 12903 12856 ID=MsG0080048300.01.T01:cds;Parent=MsG0080048300.01.T01
contig26end CDS 11569 11950 11569 ID=MsG0080048300.01.T01:cds;Parent=MsG0080048300.01.T01
contig26end CDS 8970 10339 8970 ID=MsG0080048300.01.T01:cds;Parent=MsG0080048300.01.T01
Gene Sequence

>MsG0080048300.01.T01

ATGGAAGATGCAATTTCTTCATCACCTTCCGTTTATCCCATTCTCCATGAGATGGGTACAGAAAACAGTGGAGCAAGAAGTGAGTTTTTCCCAGAAGATTCATTCAAAAGTTTAGGTGATTATGGAAAAGCATTTATGAAAACACCATTTAGGTTGAAAGATAGAATGTTTACACGATCAAAAGATTACATGGAGATTGTGGAGATGAAAGCTAGAAGCAGCCATCAAATGAAGAAGACTTTGAATGGTTGGGATCTTATTTGGTTCGGAATCGGCGCCGTCGTCGGTTCCGGCATTTTCGTTCTCACGGGTCTTGAAGCTCGTGAGGAGGCTGGTCCTGCCGTTGTTTTGTCGTATGCTGTCTCTGGTATCTCTGCTTTGTTGTCTGTTTTCTGTTACACTGAGTTCGCTGTGGAAATTCCTGTCGCAGGTGGGTCATTTGCATACTTAAGAGTAGAATTGGGAGACTTTGTGGCCTTCATAGCTGCTGGAAACATACTCCTTGAATATGTTATAGGAGCAGCAGCCGTAGCTCGATCATGGACCTCCTATTTTGCCACCCTCTGCAACAAAAATCCTAACGATTTTCGTATAATAGTCCACAATATGAACCCTGATTATGGTCATCTTGACCCTATTGCTGTTATAGCCCTCATAGCCATCGCCACCCTTGCAGTCTTAAGCACCAGAATCTCTTCTCTCTTCAACAAAATTGCAACAATCTTTCATTTAGTTGTCATTGCCTTCATCATCATTGTTGGCCTAATCAACGCCAACCCCGAAAACTATGCTTCATTTGCTCCTTTTGGTACCAGAGGTGTTTTTAAAGCCTCAGCTGTTCTTTTCTTTGCTTACATAGGCTTTGATGCAGTGTCAACTATGGCCGAGGAAACTAAAAACCCTGGCAGAGACATTCCTATTGGTCTTGTAGGATCAATGGTAATTATCACTTTCATATATTGCTCACTAGCAACAACACTATGCCTTATGCAGAACTACAAAACCATTGATGTCAATGCACCATTTTCGGTTGCATTTAGTTTTGTTGGATGGGGATGGGCTAAATACATTGTTGCATTGGGAGCATTGAAGGGAATGACGACCGTTTTGTTGGTTAATGTTGTCGGTGCCTCACGTTATTTAACTCACATTGCTCGTACTCACATGATGCCTCCTTGGTTTGCTCTTGTTCATGAGAAAACCGGGACACCTTTGAATGCTACAATTGCAATGGTTACAATAACTTCCGTGGTTGCATTTTTCACTGATCTTCGTATTCTTTCAAACCTATTGTCGATTTCAACACTTACTATTTTCGTTCTTGTAGCAATTGGGATTTTAGTGCGTCGTTATTATTCAACTGGGGTAACTACAAAAGATAATCAAGTTAAGCTCATTGTATGTGTTGTTTTGATTATTGGATCTTCATGTGGCATGTCAGTTTATAGAGCAATGAGTGATGGTTGGATTGGATGGGCATTTTCAGCACCATTGTGGCTTTTAGGAACCGGAGGTATTTGCCTTCTTGTTCCACAAGCAAAGAAACCTAAAGTTTGGGGGGTACCTTTAGTTCCTTGGTTACCTTCTTTTTCTATTGCTATAAATATATTCCTTCTTGGATCTATTGATAAAGATTCATATATAAGGTTTGGGATGTGGTCAGGGATTTTGTTGATTTACTATTTTCTCATTGGTTTGCATGCTTCTTATGATGCATCAAAGGAGGTTGAAAGCAGACATACTATGGCTCAATATGTTGACAAAGAGATTAACAATGTTGAAGAGGAATGTAAAAATTAA
Protein sequence

>MsG0080048300.01.T01

MEDAISSSPSVYPILHEMGTENSGARSEFFPEDSFKSLGDYGKAFMKTPFRLKDRMFTRSKDYMEIVEMKARSSHQMKKTLNGWDLIWFGIGAVVGSGIFVLTGLEAREEAGPAVVLSYAVSGISALLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFIAAGNILLEYVIGAAAVARSWTSYFATLCNKNPNDFRIIVHNMNPDYGHLDPIAVIALIAIATLAVLSTRISSLFNKIATIFHLVVIAFIIIVGLINANPENYASFAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPGRDIPIGLVGSMVIITFIYCSLATTLCLMQNYKTIDVNAPFSVAFSFVGWGWAKYIVALGALKGMTTVLLVNVVGASRYLTHIARTHMMPPWFALVHEKTGTPLNATIAMVTITSVVAFFTDLRILSNLLSISTLTIFVLVAIGILVRRYYSTGVTTKDNQVKLIVCVVLIIGSSCGMSVYRAMSDGWIGWAFSAPLWLLGTGGICLLVPQAKKPKVWGVPLVPWLPSFSIAINIFLLGSIDKDSYIRFGMWSGILLIYYFLIGLHASYDASKEVESRHTMAQYVDKEINNVEEECKN*