Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048302.01.T01 | PNX73593.1 | 85.841 | 226 | 28 | 2 | 1 | 226 | 246 | 467 | 2.42E-133 | 393 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048302.01.T01 | Q84MA5 | 57.207 | 222 | 84 | 2 | 1 | 222 | 382 | 592 | 3.22E-79 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048302.01.T01 | A0A2K3L4Z9 | 85.841 | 226 | 28 | 2 | 1 | 226 | 246 | 467 | 1.15e-133 | 393 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048301.01 | MsG0080048302.01 | 0.858798 | 6.432957e-63 | 1.661879e-59 |
| MsG0080048302.01 | MsG0080048345.01 | 0.801097 | 1.057247e-48 | 5.006144e-46 |
| MsG0080048302.01 | MsG0080048692.01 | -0.866285 | 3.188668e-65 | 1.068981e-61 |
| MsG0080048302.01 | MsG0080048699.01 | -0.830094 | 3.563400e-55 | 3.716986e-52 |
| MsG0080048302.01 | MsG0080049076.01 | -0.817849 | 2.664076e-52 | 1.962138e-49 |
| MsG0080048302.01 | MsG0180000337.01 | 0.820408 | 6.969157e-53 | 5.510053e-50 |
| MsG0080048302.01 | MsG0180001104.01 | 0.812007 | 5.263793e-51 | 3.308058e-48 |
| MsG0080048302.01 | MsG0180002214.01 | -0.820676 | 6.048297e-53 | 4.817048e-50 |
| MsG0080048302.01 | MsG0180002546.01 | -0.823622 | 1.254735e-53 | 1.086026e-50 |
| MsG0080048302.01 | MsG0180002935.01 | 0.805049 | 1.610278e-49 | 8.434535e-47 |
| MsG0080048302.01 | MsG0180002971.01 | 0.810774 | 9.751463e-51 | 5.931178e-48 |
| MsG0080048302.01 | MsG0180004181.01 | 0.805136 | 1.544062e-49 | 8.105954e-47 |
| MsG0080048302.01 | MsG0180004300.01 | 0.803845 | 2.870330e-49 | 1.457642e-46 |
| MsG0080048302.01 | MsG0180004393.01 | 0.872688 | 2.623405e-67 | 1.108092e-63 |
| MsG0080048302.01 | MsG0180004506.01 | -0.820135 | 8.050077e-53 | 6.316920e-50 |
| MsG0080048302.01 | MsG0180004507.01 | -0.810179 | 1.311188e-50 | 7.849748e-48 |
| MsG0080048302.01 | MsG0180005357.01 | 0.820303 | 7.364651e-53 | 5.805554e-50 |
| MsG0080048302.01 | MsG0180005817.01 | -0.805337 | 1.401460e-49 | 7.395165e-47 |
| MsG0080048302.01 | MsG0180005996.01 | 0.811283 | 7.566050e-51 | 4.664111e-48 |
| MsG0080048302.01 | MsG0180005997.01 | 0.814846 | 1.251335e-51 | 8.489231e-49 |
| MsG0080048302.01 | MsG0280007759.01 | 0.840288 | 9.515525e-58 | 1.349099e-54 |
| MsG0080048302.01 | MsG0280007760.01 | 0.842852 | 2.007061e-58 | 3.082624e-55 |
| MsG0080048302.01 | MsG0280008856.01 | 0.815526 | 8.837371e-52 | 6.107743e-49 |
| MsG0080048302.01 | MsG0280009971.01 | 0.832480 | 9.228873e-56 | 1.032835e-52 |
| MsG0080048302.01 | MsG0280010145.01 | -0.813198 | 2.890067e-51 | 1.874939e-48 |
| MsG0080048302.01 | MsG0280010296.01 | 0.822730 | 2.025602e-53 | 1.709671e-50 |
| MsG0080048302.01 | MsG0280011053.01 | 0.809629 | 1.721566e-50 | 1.016019e-47 |
| MsG0080048302.01 | MsG0380011613.01 | 0.811951 | 5.415755e-51 | 3.398328e-48 |
| MsG0080048302.01 | MsG0380011638.01 | 0.835345 | 1.771179e-56 | 2.160097e-53 |
| MsG0080048302.01 | MsG0380012008.01 | 0.849844 | 2.491429e-60 | 4.785879e-57 |
| MsG0080048302.01 | MsG0380012607.01 | 0.835171 | 1.959789e-56 | 2.377369e-53 |
| MsG0080048302.01 | MsG0380013100.01 | 0.854241 | 1.402836e-61 | 3.113285e-58 |
| MsG0080048302.01 | MsG0380013278.01 | 0.814152 | 1.781868e-51 | 1.186375e-48 |
| MsG0080048302.01 | MsG0380013940.01 | -0.822356 | 2.475294e-53 | 2.067068e-50 |
| MsG0080048302.01 | MsG0380013941.01 | -0.807368 | 5.231050e-50 | 2.908246e-47 |
| MsG0080048302.01 | MsG0380013942.01 | -0.817662 | 2.935626e-52 | 2.151062e-49 |
| MsG0080048302.01 | MsG0380013943.01 | -0.819139 | 1.358674e-52 | 1.036823e-49 |
| MsG0080048302.01 | MsG0380013945.01 | -0.840765 | 7.139049e-58 | 1.027284e-54 |
| MsG0080048302.01 | MsG0380013951.01 | -0.842858 | 1.999854e-58 | 3.072171e-55 |
| MsG0080048302.01 | MsG0380013953.01 | -0.832718 | 8.058193e-56 | 9.082573e-53 |
| MsG0080048302.01 | MsG0380013957.01 | -0.831201 | 1.909142e-55 | 2.057121e-52 |
| MsG0080048302.01 | MsG0380013966.01 | -0.836683 | 8.107593e-57 | 1.029269e-53 |
| MsG0080048302.01 | MsG0380013967.01 | -0.832973 | 6.962519e-56 | 7.907674e-53 |
| MsG0080048302.01 | MsG0380013968.01 | -0.845940 | 2.967110e-59 | 5.025833e-56 |
| MsG0080048302.01 | MsG0380013971.01 | -0.816858 | 4.453094e-52 | 3.191873e-49 |
| MsG0080048302.01 | MsG0380013977.01 | -0.832634 | 8.451865e-56 | 9.502265e-53 |
| MsG0080048302.01 | MsG0380014005.01 | -0.826130 | 3.210994e-54 | 2.985062e-51 |
| MsG0080048302.01 | MsG0380014006.01 | -0.838949 | 2.121853e-57 | 2.886495e-54 |
| MsG0080048302.01 | MsG0380014018.01 | -0.809737 | 1.631928e-50 | 9.658378e-48 |
| MsG0080048302.01 | MsG0380014023.01 | -0.814852 | 1.247550e-51 | 8.464742e-49 |
| MsG0080048302.01 | MsG0380014026.01 | -0.823715 | 1.192832e-53 | 1.035317e-50 |
| MsG0080048302.01 | MsG0380014032.01 | -0.849617 | 2.882404e-60 | 5.496276e-57 |
| MsG0080048302.01 | MsG0380014033.01 | -0.854859 | 9.293147e-62 | 2.104762e-58 |
| MsG0080048302.01 | MsG0380014039.01 | -0.805551 | 1.264061e-49 | 6.706745e-47 |
| MsG0080048302.01 | MsG0380015115.01 | 0.806124 | 9.579277e-50 | 5.157949e-47 |
| MsG0080048302.01 | MsG0380015217.01 | 0.809894 | 1.509929e-50 | 8.972621e-48 |
| MsG0080048302.01 | MsG0380016270.01 | 0.845590 | 3.692995e-59 | 6.184123e-56 |
| MsG0080048302.01 | MsG0380017007.01 | -0.822385 | 2.437429e-53 | 2.037179e-50 |
| MsG0080048302.01 | MsG0380017690.01 | 0.803181 | 3.940468e-49 | 1.967162e-46 |
| MsG0080048302.01 | MsG0380018026.01 | 0.867740 | 1.095540e-65 | 3.865985e-62 |
| MsG0080048302.01 | MsG0480018296.01 | -0.826180 | 3.124652e-54 | 2.908979e-51 |
| MsG0080048302.01 | MsG0480019017.01 | 0.809069 | 2.269782e-50 | 1.319609e-47 |
| MsG0080048302.01 | MsG0480019106.01 | 0.802448 | 5.583236e-49 | 2.735663e-46 |
| MsG0080048302.01 | MsG0480019107.01 | 0.835919 | 1.267385e-56 | 1.572334e-53 |
| MsG0080048302.01 | MsG0480020444.01 | 0.816614 | 5.048916e-52 | 3.594854e-49 |
| MsG0080048302.01 | MsG0480020957.01 | 0.826009 | 3.431219e-54 | 3.178937e-51 |
| MsG0080048302.01 | MsG0480020986.01 | 0.815627 | 8.391591e-52 | 5.816061e-49 |
| MsG0080048302.01 | MsG0480021001.01 | 0.855380 | 6.560510e-62 | 1.511885e-58 |
| MsG0080048302.01 | MsG0480021912.01 | -0.805914 | 1.060567e-49 | 5.680098e-47 |
| MsG0080048302.01 | MsG0480022125.01 | 0.845984 | 2.887826e-59 | 4.898727e-56 |
| MsG0080048302.01 | MsG0480022507.01 | 0.832865 | 7.404491e-56 | 8.382461e-53 |
| MsG0080048302.01 | MsG0480022508.01 | 0.859927 | 2.946411e-63 | 7.913945e-60 |
| MsG0080048302.01 | MsG0480022515.01 | 0.804353 | 2.249900e-49 | 1.157539e-46 |
| MsG0080048302.01 | MsG0480022520.01 | 0.805435 | 1.337119e-49 | 7.073430e-47 |
| MsG0080048302.01 | MsG0480022735.01 | 0.834895 | 2.300061e-56 | 2.767001e-53 |
| MsG0080048302.01 | MsG0480022736.01 | 0.812601 | 3.906384e-51 | 2.494385e-48 |
| MsG0080048302.01 | MsG0480023819.01 | 0.804954 | 1.685723e-49 | 8.808562e-47 |
| MsG0080048302.01 | MsG0480023947.01 | 0.804468 | 2.129008e-49 | 1.098565e-46 |
| MsG0080048302.01 | MsG0580024344.01 | 0.817111 | 3.907076e-52 | 2.819889e-49 |
| MsG0080048302.01 | MsG0580024467.01 | 0.839916 | 1.190260e-57 | 1.668214e-54 |
| MsG0080048302.01 | MsG0580025180.01 | 0.831654 | 1.476943e-55 | 1.613046e-52 |
| MsG0080048302.01 | MsG0580025683.01 | 0.804418 | 2.180561e-49 | 1.123696e-46 |
| MsG0080048302.01 | MsG0580025870.01 | 0.851318 | 9.596216e-61 | 1.935045e-57 |
| MsG0080048302.01 | MsG0580025876.01 | 0.803577 | 3.262705e-49 | 1.645539e-46 |
| MsG0080048302.01 | MsG0580027677.01 | -0.807894 | 4.043322e-50 | 2.278891e-47 |
| MsG0080048302.01 | MsG0580028051.01 | 0.800071 | 1.711859e-48 | 7.896978e-46 |
| MsG0080048302.01 | MsG0580029583.01 | 0.873266 | 1.679454e-67 | 7.243481e-64 |
| MsG0080048302.01 | MsG0580029930.01 | 0.826670 | 2.388905e-54 | 2.255218e-51 |
| MsG0080048302.01 | MsG0680031429.01 | 0.822344 | 2.491419e-53 | 2.079805e-50 |
| MsG0080048302.01 | MsG0680031655.01 | 0.805913 | 1.060834e-49 | 5.681447e-47 |
| MsG0080048302.01 | MsG0680035741.01 | 0.810672 | 1.026124e-50 | 6.224258e-48 |
| MsG0080048302.01 | MsG0680035841.01 | 0.814252 | 1.693367e-51 | 1.130531e-48 |
| MsG0080048302.01 | MsG0680035842.01 | 0.840989 | 6.235069e-58 | 9.034270e-55 |
| MsG0080048302.01 | MsG0780037094.01 | 0.803812 | 2.915575e-49 | 1.479309e-46 |
| MsG0080048302.01 | MsG0780037943.01 | 0.817007 | 4.121390e-52 | 2.966376e-49 |
| MsG0080048302.01 | MsG0780038545.01 | 0.816663 | 4.923746e-52 | 3.510498e-49 |
| MsG0080048302.01 | MsG0780039190.01 | 0.835579 | 1.546074e-56 | 1.898502e-53 |
| MsG0080048302.01 | MsG0780039450.01 | 0.803034 | 4.226128e-49 | 2.101776e-46 |
| MsG0080048302.01 | MsG0780039576.01 | 0.807174 | 5.749358e-50 | 3.180429e-47 |
| MsG0080048302.01 | MsG0780039968.01 | 0.831508 | 1.603969e-55 | 1.744263e-52 |
| MsG0080048302.01 | MsG0780040060.01 | 0.888478 | 5.697228e-73 | 4.421081e-69 |
| MsG0080048302.01 | MsG0780040480.01 | 0.866129 | 3.572847e-65 | 1.191243e-61 |
| MsG0080048302.01 | MsG0780041589.01 | 0.847886 | 8.708598e-60 | 1.570096e-56 |
| MsG0080048302.01 | MsG0780041641.01 | 0.804526 | 2.070363e-49 | 1.069879e-46 |
| MsG0080048302.01 | MsG0880042368.01 | 0.804492 | 2.104589e-49 | 1.086621e-46 |
| MsG0080048302.01 | MsG0880042810.01 | 0.819668 | 1.029231e-52 | 7.971243e-50 |
| MsG0080048302.01 | MsG0880042832.01 | 0.808715 | 2.702497e-50 | 1.556345e-47 |
| MsG0080048302.01 | MsG0880043185.01 | 0.807776 | 4.284823e-50 | 2.407644e-47 |
| MsG0080048302.01 | MsG0880043262.01 | 0.820087 | 8.256653e-53 | 6.470372e-50 |
| MsG0080048302.01 | MsG0880043537.01 | 0.820972 | 5.171266e-53 | 4.153295e-50 |
| MsG0080048302.01 | MsG0880043824.01 | 0.859198 | 4.881554e-63 | 1.278638e-59 |
| MsG0080048302.01 | MsG0880044669.01 | 0.805516 | 1.285610e-49 | 6.814907e-47 |
| MsG0080048302.01 | MsG0880044855.01 | 0.834068 | 3.711908e-56 | 4.356143e-53 |
| MsG0080048302.01 | MsG0880045256.01 | 0.826474 | 2.660421e-54 | 2.497421e-51 |
| MsG0080048302.01 | MsG0880045677.01 | 0.802260 | 6.103609e-49 | 2.976329e-46 |
| MsG0080048302.01 | MsG0880045861.01 | 0.870111 | 1.866907e-66 | 7.176843e-63 |
| MsG0080048302.01 | MsG0880046753.01 | 0.815743 | 7.905268e-52 | 5.496494e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048302.01.T01 | MTR_8g089340 | 92.035 | 226 | 18 | 0 | 1 | 226 | 236 | 461 | 4.38e-132 | 380 |
| MsG0080048302.01.T01 | MTR_8g089320 | 90.090 | 222 | 21 | 1 | 1 | 222 | 384 | 604 | 1.06e-131 | 384 |
| MsG0080048302.01.T01 | MTR_8g089360 | 67.453 | 212 | 64 | 3 | 1 | 212 | 372 | 578 | 1.38e-94 | 288 |
| MsG0080048302.01.T01 | MTR_8g089360 | 67.453 | 212 | 64 | 3 | 1 | 212 | 389 | 595 | 2.22e-94 | 288 |
| MsG0080048302.01.T01 | MTR_1g030660 | 62.564 | 195 | 71 | 1 | 1 | 195 | 379 | 571 | 7.48e-80 | 250 |
| MsG0080048302.01.T01 | MTR_2g035430 | 52.683 | 205 | 96 | 1 | 1 | 205 | 384 | 587 | 3.83e-72 | 230 |
| MsG0080048302.01.T01 | MTR_6g034535 | 46.078 | 204 | 104 | 3 | 1 | 200 | 112 | 313 | 5.92e-60 | 191 |
| MsG0080048302.01.T01 | MTR_8g461380 | 47.449 | 196 | 100 | 3 | 1 | 195 | 391 | 584 | 5.49e-57 | 190 |
| MsG0080048302.01.T01 | MTR_1g111740 | 36.842 | 209 | 123 | 4 | 1 | 206 | 371 | 573 | 1.02e-35 | 132 |
| MsG0080048302.01.T01 | MTR_4g099270 | 36.364 | 198 | 114 | 4 | 1 | 192 | 226 | 417 | 3.73e-27 | 108 |
| MsG0080048302.01.T01 | MTR_4g099270 | 36.364 | 198 | 114 | 4 | 1 | 192 | 338 | 529 | 6.55e-27 | 108 |
| MsG0080048302.01.T01 | MTR_2g064760 | 86.207 | 29 | 4 | 0 | 107 | 135 | 13 | 41 | 5.46e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048302.01.T01 | AT4G21120 | 57.207 | 222 | 84 | 2 | 1 | 222 | 232 | 442 | 6.86e-82 | 251 |
| MsG0080048302.01.T01 | AT4G21120 | 57.207 | 222 | 84 | 2 | 1 | 222 | 382 | 592 | 3.28e-80 | 251 |
| MsG0080048302.01.T01 | AT2G34960 | 52.381 | 189 | 90 | 0 | 1 | 189 | 375 | 563 | 9.63e-66 | 213 |
| MsG0080048302.01.T01 | AT1G17120 | 52.381 | 189 | 88 | 2 | 1 | 189 | 393 | 579 | 4.20e-57 | 191 |
| MsG0080048302.01.T01 | AT3G10600 | 40.704 | 199 | 97 | 5 | 1 | 189 | 232 | 419 | 4.98e-37 | 134 |
| MsG0080048302.01.T01 | AT3G10600 | 40.704 | 199 | 97 | 5 | 1 | 189 | 378 | 565 | 2.12e-36 | 134 |
| MsG0080048302.01.T01 | AT5G04770 | 39.894 | 188 | 106 | 3 | 1 | 185 | 232 | 415 | 3.23e-34 | 127 |
| MsG0080048302.01.T01 | AT5G04770 | 39.894 | 188 | 106 | 3 | 1 | 185 | 379 | 562 | 1.58e-33 | 127 |
| MsG0080048302.01.T01 | AT5G36940 | 44.444 | 63 | 35 | 0 | 1 | 63 | 348 | 410 | 8.16e-12 | 64.7 |
Find 51 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGGAATTTCAGCTTAT+TGG | 0.122057 | contig26end:+27456 | MsG0080048302.01.T01:CDS |
| GTGTGTCTTGTGTTGATTAT+TGG | 0.202436 | contig26end:+27428 | MsG0080048302.01.T01:CDS |
| ATACATATCAAGTTATTAAT+TGG | 0.204469 | contig26end:-27867 | None:intergenic |
| TTGGTATACTATGTGCTATT+AGG | 0.217718 | contig26end:+27707 | MsG0080048302.01.T01:CDS |
| GCTATTAACATATTCCTTCT+TGG | 0.225477 | contig26end:+27632 | MsG0080048302.01.T01:CDS |
| AATTGGAATTTCAGCTTATT+GGG | 0.231227 | contig26end:+27457 | MsG0080048302.01.T01:CDS |
| TTGCTCCTTTGTGGTTTATA+GGG | 0.241128 | contig26end:+27519 | MsG0080048302.01.T01:CDS |
| TTTGCTCCTTTGTGGTTTAT+AGG | 0.244832 | contig26end:+27518 | MsG0080048302.01.T01:CDS |
| CTAATAGTAGTGAGCATAAT+TGG | 0.262172 | contig26end:+27480 | MsG0080048302.01.T01:CDS |
| CGTATATAAGGTTTACGATT+TGG | 0.279431 | contig26end:+27672 | MsG0080048302.01.T01:CDS |
| GGGGAGTTCCTTTGGTTCCT+TGG | 0.281218 | contig26end:+27591 | MsG0080048302.01.T01:CDS |
| TTATAGGGACTGGTGCTCTT+TGG | 0.283313 | contig26end:+27534 | MsG0080048302.01.T01:CDS |
| TGGTATACTATGTGCTATTA+GGG | 0.320967 | contig26end:+27708 | MsG0080048302.01.T01:CDS |
| TGGCAAAGAAGCCTAAATTA+TGG | 0.332142 | contig26end:+27570 | MsG0080048302.01.T01:CDS |
| AAAGGAACTCCCCATAATTT+AGG | 0.346807 | contig26end:-27581 | None:intergenic |
| TAAATTATGGGGAGTTCCTT+TGG | 0.356075 | contig26end:+27583 | MsG0080048302.01.T01:CDS |
| TTGATTATTGGTTCTTCAAT+TGG | 0.371036 | contig26end:+27440 | MsG0080048302.01.T01:CDS |
| ATACAATCTTTGCTCCTTTG+TGG | 0.380411 | contig26end:+27510 | MsG0080048302.01.T01:CDS |
| TTCCATTGCTTCTCAACCTC+CGG | 0.382100 | contig26end:-27794 | None:intergenic |
| GGCAAAGAAGCCTAAATTAT+GGG | 0.393362 | contig26end:+27571 | MsG0080048302.01.T01:CDS |
| GCTCTTGTTGATGAAAGAAC+TGG | 0.394168 | contig26end:+27212 | MsG0080048302.01.T01:CDS |
| ATTGAGATTGTAGCATTCAT+AGG | 0.394274 | contig26end:-27239 | None:intergenic |
| TCAAGTGGGGTAACTACAAA+AGG | 0.402045 | contig26end:+27386 | MsG0080048302.01.T01:CDS |
| AATTTAGGCTTCTTTGCCAT+TGG | 0.418140 | contig26end:-27566 | None:intergenic |
| CCTTTGTGGTTTATAGGGAC+TGG | 0.440792 | contig26end:+27524 | MsG0080048302.01.T01:CDS |
| ATAAGGTTTACGATTTGGAC+AGG | 0.465281 | contig26end:+27677 | MsG0080048302.01.T01:CDS |
| ACATAGCAGTGGTTCTGATC+CGG | 0.487510 | contig26end:+27775 | MsG0080048302.01.T01:CDS |
| AAGGAATATGTTAATAGCAA+TGG | 0.490509 | contig26end:-27627 | None:intergenic |
| AGTAGTGAGCATAATTGGAT+TGG | 0.492532 | contig26end:+27485 | MsG0080048302.01.T01:CDS |
| TAAGGAGATATTATTCAAGT+GGG | 0.502977 | contig26end:+27372 | MsG0080048302.01.T01:CDS |
| GATTTGGACAGGGTTTCTCT+TGG | 0.516461 | contig26end:+27688 | MsG0080048302.01.T01:CDS |
| ATAAAGTAGAAATCGACAAA+AGG | 0.538029 | contig26end:-27316 | None:intergenic |
| TTAATAGCAATGGATAAAGA+AGG | 0.556623 | contig26end:-27617 | None:intergenic |
| ATCCGGAGGTTGAGAAGCAA+TGG | 0.560522 | contig26end:+27792 | MsG0080048302.01.T01:CDS |
| CAAGTGGGGTAACTACAAAA+GGG | 0.569446 | contig26end:+27387 | MsG0080048302.01.T01:CDS |
| GTAAGGAGATATTATTCAAG+TGG | 0.577397 | contig26end:+27371 | MsG0080048302.01.T01:CDS |
| GTTAGCTAGAATACTAAGAT+CGG | 0.584642 | contig26end:-27294 | None:intergenic |
| TGAGAAGCAATGGAACAAGA+TGG | 0.601081 | contig26end:+27802 | MsG0080048302.01.T01:CDS |
| GTACTCACATGATGCCACCT+TGG | 0.601374 | contig26end:+27186 | None:intergenic |
| GAAGGTAGCCAAGGAACCAA+AGG | 0.606519 | contig26end:-27599 | None:intergenic |
| ATGGATAAAGAAGGTAGCCA+AGG | 0.614956 | contig26end:-27608 | None:intergenic |
| TAAGGTTTACGATTTGGACA+GGG | 0.615168 | contig26end:+27678 | MsG0080048302.01.T01:CDS |
| GATAAGAGTAAACATAGCAG+TGG | 0.622480 | contig26end:+27764 | MsG0080048302.01.T01:CDS |
| CAATGGAACAAGATGGAGCA+AGG | 0.635963 | contig26end:+27809 | MsG0080048302.01.T01:CDS |
| GCAAAGAAGCCTAAATTATG+GGG | 0.643860 | contig26end:+27572 | MsG0080048302.01.T01:CDS |
| TAGCAGTGGTTCTGATCCGG+AGG | 0.648811 | contig26end:+27778 | MsG0080048302.01.T01:CDS |
| AAGGAGATATTATTCAAGTG+GGG | 0.676082 | contig26end:+27373 | MsG0080048302.01.T01:CDS |
| GTTACATGCTTCATATGACA+CGG | 0.676963 | contig26end:+27730 | MsG0080048302.01.T01:CDS |
| CCAGTCCCTATAAACCACAA+AGG | 0.715990 | contig26end:-27524 | None:intergenic |
| TCAACAAGAGCAAACCAAGG+TGG | 0.728106 | contig26end:-27200 | None:intergenic |
| TCATCAACAAGAGCAAACCA+AGG | 0.735762 | contig26end:-27203 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATAAAAAATCGTATATA+AGG | + | contig26end:27660-27679 | MsG0080048302.01.T01:CDS | 15.0% |
| !!! | TTTATTTATCTTTTCACTTG+TGG | + | contig26end:27334-27353 | MsG0080048302.01.T01:CDS | 20.0% |
| ! | AAGGAATATGTTAATAGCAA+TGG | - | contig26end:27630-27649 | None:intergenic | 25.0% |
| ! | AATTGGAATTTCAGCTTATT+GGG | + | contig26end:27457-27476 | MsG0080048302.01.T01:CDS | 25.0% |
| ! | ATAAAGTAGAAATCGACAAA+AGG | - | contig26end:27319-27338 | None:intergenic | 25.0% |
| ! | TAAGGAGATATTATTCAAGT+GGG | + | contig26end:27372-27391 | MsG0080048302.01.T01:CDS | 25.0% |
| ! | TTAATAGCAATGGATAAAGA+AGG | - | contig26end:27620-27639 | None:intergenic | 25.0% |
| !! | TTTTATCAATAGTTCCAAGA+AGG | - | contig26end:27649-27668 | None:intergenic | 25.0% |
| !!! | TTGATTATTGGTTCTTCAAT+TGG | + | contig26end:27440-27459 | MsG0080048302.01.T01:CDS | 25.0% |
| AAGGAGATATTATTCAAGTG+GGG | + | contig26end:27373-27392 | MsG0080048302.01.T01:CDS | 30.0% | |
| ATTGAGATTGTAGCATTCAT+AGG | - | contig26end:27242-27261 | None:intergenic | 30.0% | |
| CAATTGGAATTTCAGCTTAT+TGG | + | contig26end:27456-27475 | MsG0080048302.01.T01:CDS | 30.0% | |
| CGTATATAAGGTTTACGATT+TGG | + | contig26end:27672-27691 | MsG0080048302.01.T01:CDS | 30.0% | |
| CTAATAGTAGTGAGCATAAT+TGG | + | contig26end:27480-27499 | MsG0080048302.01.T01:CDS | 30.0% | |
| GCTATTAACATATTCCTTCT+TGG | + | contig26end:27632-27651 | MsG0080048302.01.T01:CDS | 30.0% | |
| GTAAGGAGATATTATTCAAG+TGG | + | contig26end:27371-27390 | MsG0080048302.01.T01:CDS | 30.0% | |
| GTTAGCTAGAATACTAAGAT+CGG | - | contig26end:27297-27316 | None:intergenic | 30.0% | |
| ! | TGGTATACTATGTGCTATTA+GGG | + | contig26end:27708-27727 | MsG0080048302.01.T01:CDS | 30.0% |
| ! | TTGGTATACTATGTGCTATT+AGG | + | contig26end:27707-27726 | MsG0080048302.01.T01:CDS | 30.0% |
| AAAGGAACTCCCCATAATTT+AGG | - | contig26end:27584-27603 | None:intergenic | 35.0% | |
| AATTTAGGCTTCTTTGCCAT+TGG | - | contig26end:27569-27588 | None:intergenic | 35.0% | |
| AGTAGTGAGCATAATTGGAT+TGG | + | contig26end:27485-27504 | MsG0080048302.01.T01:CDS | 35.0% | |
| ATACAATCTTTGCTCCTTTG+TGG | + | contig26end:27510-27529 | MsG0080048302.01.T01:CDS | 35.0% | |
| GATAAGAGTAAACATAGCAG+TGG | + | contig26end:27764-27783 | MsG0080048302.01.T01:CDS | 35.0% | |
| GCAAAGAAGCCTAAATTATG+GGG | + | contig26end:27572-27591 | MsG0080048302.01.T01:CDS | 35.0% | |
| GGCAAAGAAGCCTAAATTAT+GGG | + | contig26end:27571-27590 | MsG0080048302.01.T01:CDS | 35.0% | |
| GTTACATGCTTCATATGACA+CGG | + | contig26end:27730-27749 | MsG0080048302.01.T01:CDS | 35.0% | |
| TAAATTATGGGGAGTTCCTT+TGG | + | contig26end:27583-27602 | MsG0080048302.01.T01:CDS | 35.0% | |
| TGGCAAAGAAGCCTAAATTA+TGG | + | contig26end:27570-27589 | MsG0080048302.01.T01:CDS | 35.0% | |
| TTGCTCCTTTGTGGTTTATA+GGG | + | contig26end:27519-27538 | MsG0080048302.01.T01:CDS | 35.0% | |
| TTTGCTCCTTTGTGGTTTAT+AGG | + | contig26end:27518-27537 | MsG0080048302.01.T01:CDS | 35.0% | |
| ! | ATAAGGTTTACGATTTGGAC+AGG | + | contig26end:27677-27696 | MsG0080048302.01.T01:CDS | 35.0% |
| ! | TAAGGTTTACGATTTGGACA+GGG | + | contig26end:27678-27697 | MsG0080048302.01.T01:CDS | 35.0% |
| ! | TGGCATTAGCACTTTTAGTA+AGG | + | contig26end:27354-27373 | MsG0080048302.01.T01:CDS | 35.0% |
| !! | GTGTGTCTTGTGTTGATTAT+TGG | + | contig26end:27428-27447 | MsG0080048302.01.T01:CDS | 35.0% |
| !!! | TCTTTGGCTTTTTGTTCCAA+TGG | + | contig26end:27550-27569 | MsG0080048302.01.T01:CDS | 35.0% |
| ATGGATAAAGAAGGTAGCCA+AGG | - | contig26end:27611-27630 | None:intergenic | 40.0% | |
| CAAGTGGGGTAACTACAAAA+GGG | + | contig26end:27387-27406 | MsG0080048302.01.T01:CDS | 40.0% | |
| TCAAGTGGGGTAACTACAAA+AGG | + | contig26end:27386-27405 | MsG0080048302.01.T01:CDS | 40.0% | |
| TCATCAACAAGAGCAAACCA+AGG | - | contig26end:27206-27225 | None:intergenic | 40.0% | |
| TGAGAAGCAATGGAACAAGA+TGG | + | contig26end:27802-27821 | MsG0080048302.01.T01:CDS | 40.0% | |
| ! | GCTCTTGTTGATGAAAGAAC+TGG | + | contig26end:27212-27231 | MsG0080048302.01.T01:CDS | 40.0% |
| CAATGGAACAAGATGGAGCA+AGG | + | contig26end:27809-27828 | MsG0080048302.01.T01:CDS | 45.0% | |
| CCAGTCCCTATAAACCACAA+AGG | - | contig26end:27527-27546 | None:intergenic | 45.0% | |
| CCTTTGTGGTTTATAGGGAC+TGG | + | contig26end:27524-27543 | MsG0080048302.01.T01:CDS | 45.0% | |
| GATTTGGACAGGGTTTCTCT+TGG | + | contig26end:27688-27707 | MsG0080048302.01.T01:CDS | 45.0% | |
| TCAACAAGAGCAAACCAAGG+TGG | - | contig26end:27203-27222 | None:intergenic | 45.0% | |
| TTCCATTGCTTCTCAACCTC+CGG | - | contig26end:27797-27816 | None:intergenic | 45.0% | |
| ! | TTATAGGGACTGGTGCTCTT+TGG | + | contig26end:27534-27553 | MsG0080048302.01.T01:CDS | 45.0% |
| !! | ACATAGCAGTGGTTCTGATC+CGG | + | contig26end:27775-27794 | MsG0080048302.01.T01:CDS | 45.0% |
| ATCCGGAGGTTGAGAAGCAA+TGG | + | contig26end:27792-27811 | MsG0080048302.01.T01:CDS | 50.0% | |
| GAAGGTAGCCAAGGAACCAA+AGG | - | contig26end:27602-27621 | None:intergenic | 50.0% | |
| ! | GGGGAGTTCCTTTGGTTCCT+TGG | + | contig26end:27591-27610 | MsG0080048302.01.T01:CDS | 55.0% |
| !! | TAGCAGTGGTTCTGATCCGG+AGG | + | contig26end:27778-27797 | MsG0080048302.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig26end | gene | 27194 | 27874 | 27194 | ID=MsG0080048302.01;Name=MsG0080048302.01 |
| contig26end | mRNA | 27194 | 27874 | 27194 | ID=MsG0080048302.01.T01;Parent=MsG0080048302.01;Name=MsG0080048302.01.T01;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|226 |
| contig26end | exon | 27194 | 27874 | 27194 | ID=MsG0080048302.01.T01:exon:22972;Parent=MsG0080048302.01.T01 |
| contig26end | CDS | 27194 | 27874 | 27194 | ID=MsG0080048302.01.T01:cds;Parent=MsG0080048302.01.T01 |
| Gene Sequence |
| Protein sequence |
