AlfalfaGEDB | MsG0080049015.01

M. sativa cultivar ZhongmuNo.1 / MsG0080049015.01

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080049015.01.T01	XP_003591127.1	97.717	219	5	0	62	280	65	283	8.10E-154	441

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080049015.01.T01	F4J7A7	68.465	241	76	0	40	280	40	280	1.72E-114	333

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080049015.01.T01	G7I8M8	97.717	219	5	0	62	280	65	283	3.87e-154	441

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0080049015.01	0.827233	1.752300e-54	1.681600e-51
MsG0080047967.01	MsG0080049015.01	0.890126	1.305365e-73	1.083532e-69
MsG0080048036.01	MsG0080049015.01	-0.827686	1.364047e-54	1.326309e-51
MsG0080048059.01	MsG0080049015.01	0.879131	1.600133e-69	8.574785e-66
MsG0080048301.01	MsG0080049015.01	-0.800930	1.143900e-48	5.393356e-46
MsG0080048347.01	MsG0080049015.01	-0.804155	2.474009e-49	1.266385e-46
MsG0080048486.01	MsG0080049015.01	-0.833888	4.116553e-56	4.805492e-53
MsG0080048487.01	MsG0080049015.01	-0.832315	1.013977e-55	1.129075e-52
MsG0080048488.01	MsG0080049015.01	-0.826020	3.411054e-54	3.161194e-51
MsG0080048489.01	MsG0080049015.01	-0.828841	7.184098e-55	7.224122e-52

Showing 1 to 10 of 682 entries

Previous1 2 3 4 5…69Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080049015.01.T01	MTR_1g083110	97.717	219	5	0	62	280	65	283	9.81e-158	441
MsG0080049015.01.T01	MTR_7g023290	25.543	184	102	6	95	278	89	237	1.69e-14	71.6
MsG0080049015.01.T01	MTR_7g023290	25.543	184	102	6	95	278	86	234	1.80e-14	71.6

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080049015.01.T01	AT3G05410	68.465	241	76	0	40	280	40	280	1.75e-115	333
MsG0080049015.01.T01	AT3G05410	65.942	138	47	0	40	177	40	177	1.71e-53	172
MsG0080049015.01.T01	AT3G05410	63.699	146	52	1	40	184	40	185	4.38e-53	172
MsG0080049015.01.T01	AT3G55330	24.868	189	99	6	95	279	80	229	4.13e-12	64.7

Showing 1 to 4 of 4 entries

Previous1Next

Find 7 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCAAATCATTGATATTAAT+TGG	0.250521	contig609end:-12030	MsG0080049015.01.T01:intron
ATCAATGATTTGATGTGTCA+TGG	0.599292	contig609end:+12039	None:intergenic
ATGTGTCATGGTCGAAAGGA+AGG	0.516071	contig609end:+12051	None:intergenic
GTGTCATGGTCGAAAGGAAG+GGG	0.565754	contig609end:+12053	None:intergenic
TGTCATGGTCGAAAGGAAGG+GGG	0.683517	contig609end:+12054	None:intergenic
TGTGTCATGGTCGAAAGGAA+GGG	0.623180	contig609end:+12052	None:intergenic
TTTGATGTGTCATGGTCGAA+AGG	0.659881	contig609end:+12047	None:intergenic

Showing 1 to 7 of 7 entries

Previous1Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGAAATGGAACTATCAT+TGG	-	contig609end:11205-11224	MsG0080049015.01.T01:CDS	30.0%
AAGAGGTAGCAAAAATATAG+AGG	-	contig609end:10589-10608	MsG0080049015.01.T01:intron	30.0%
AATTTATATACCCGGTGAAT+TGG	-	contig609end:11144-11163	MsG0080049015.01.T01:CDS	30.0%
ATATGTACGGAGAAATTCTT+AGG	+	contig609end:10396-10415	None:intergenic	30.0%
ATCAATGATTTGATGTGTCA+TGG	+	contig609end:10024-10043	None:intergenic	30.0%
ATTTATATACCCGGTGAATT+GGG	-	contig609end:11145-11164	MsG0080049015.01.T01:CDS	30.0%
TGACATAAAGAGTTGAAAGA+TGG	-	contig609end:10680-10699	MsG0080049015.01.T01:intron	30.0%
TGTGACCAAAGAAAATTTCT+TGG	-	contig609end:10360-10379	MsG0080049015.01.T01:CDS	30.0%
TTATGTGTAGACTCTTATGA+TGG	-	contig609end:10095-10114	MsG0080049015.01.T01:exon	30.0%
AAGTTAAAGAAGCAGTAGTG+TGG	-	contig609end:10796-10815	MsG0080049015.01.T01:CDS	35.0%

Showing 1 to 10 of 175 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
contig609end	gene	10001	12081	10001	ID=MsG0080049015.01;
contig609end	mRNA	10001	12081	10001	ID=MsG0080049015.01.T01;Parent=MsG0080049015.01
contig609end	exon	10001	10581	10001	ID=MsG0080049015.01.T01.exon;Parent=MsG0080049015.01.T01
contig609end	CDS	10269	10581	10269	ID=MsG0080049015.01.T01.cds;Parent=MsG0080049015.01.T01
contig609end	CDS	10728	10938	10728	ID=MsG0080049015.01.T01.cds;Parent=MsG0080049015.01.T01
contig609end	exon	10728	10938	10728	ID=MsG0080049015.01.T01.exon;Parent=MsG0080049015.01.T01
contig609end	CDS	11057	11230	11057	ID=MsG0080049015.01.T01.cds;Parent=MsG0080049015.01.T01
contig609end	exon	11057	11230	11057	ID=MsG0080049015.01.T01.exon;Parent=MsG0080049015.01.T01
contig609end	CDS	11722	11837	11722	ID=MsG0080049015.01.T01.cds;Parent=MsG0080049015.01.T01
contig609end	exon	11722	11837	11722	ID=MsG0080049015.01.T01.exon;Parent=MsG0080049015.01.T01
contig609end	CDS	12031	12059	12031	ID=MsG0080049015.01.T01.cds;Parent=MsG0080049015.01.T01
contig609end	exon	12031	12081	12031	ID=MsG0080049015.01.T01.exon;Parent=MsG0080049015.01.T01

Gene Sequence

>MsG0080049015.01.T01

ATGACACATCAAATCATTGATATTAATTGGAACAAGAAATTTGGTTTGGTCACACATAGAGATTTTGCCTTCTCTCTCTTTACAAATAAACAAATACTTTTCATTTTCTCTCTCTTTTTCTCTTCTCTCTCTTCTTTCTTTGATTCGGCGGCTTCTTGTGGGAATAGGTTCAGCTTCACTTGTAGCCTTAGGTGCAATTTTGGTGGCATCACTAGTTTTTTTCTTGGTTTGTCACCACAGAATGGTCGTAAACTGAAGCTAGATGTGCTTTATCCCATAGGAGGCTACACACGTTACATTGACACAAGAGAGGGGTTCGAATTTATATACCCGGTGAATTGGGTTGGAGATCAGACACTGCTGTATCGAGCTGCTAAAAGAAGAGAAATGGAACTATCATTGGATCCTCCTCCACTGAATTTACGGCCACGTTCTAATGTCAATGAACCAGTTGTCGCATTTGGTCCCCCGGGTTCCAATGGTGAACTCAATGTCAGTGTTATTGTTTCCCCCGTTGCTCTAGACTTCTCGATTGAAGCATTTGGAAGCCCTGAGGAGGTGGGGGAAGCTGTAATTCGGACCATAACAGGATCCGGGCAACGGCCAGATGTGAAGGGAACATTGGTAAAATCAAGTTTGAGAGAGGATACTGTTAGAAATGCCAAATACTACGAGCTGGAATTCAGAGTTGAGAGTCCTTCGTTTAGGCGACACAATGTTTGTGTCTGTTGTGCTCGTGGTGGGAGGCTCTTCACGTTGAATGCTCAGGCACCTGAATCAGCCTGGCCAGGAGTGAAGTCTGATTTCTATACAATTGCAGATTCATTCAATCTCACAACTTAG

Protein sequence

>MsG0080049015.01.T01

MTHQIIDINWNKKFGLVTHRDFAFSLFTNKQILFIFSLFFSSLSSFFDSAASCGNRFSFTCSLRCNFGGITSFFLGLSPQNGRKLKLDVLYPIGGYTRYIDTREGFEFIYPVNWVGDQTLLYRAAKRREMELSLDPPPLNLRPRSNVNEPVVAFGPPGSNGELNVSVIVSPVALDFSIEAFGSPEEVGEAVIRTITGSGQRPDVKGTLVKSSLREDTVRNAKYYELEFRVESPSFRRHNVCVCCARGGRLFTLNAQAPESAWPGVKSDFYTIADSFNLTT*