AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048638.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048638.01.T02 MTR_8g022770 99.160 119 1 0 1 119 1 119 2.65e-87 249
MsG0080048638.01.T02 MTR_8g022770 100.000 92 0 0 28 119 18 109 5.64e-67 197
MsG0080048638.01.T01 MTR_6g074900 86.111 36 5 0 9 44 31 66 1.16e-16 69.7
MsG0080048638.01.T01 MTR_2g028885 47.222 72 29 2 35 105 14 77 1.41e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048638.01.T02 AT3G59650 83.193 119 20 0 1 119 1 119 7.54e-74 215
MsG0080048638.01.T02 AT3G59650 67.808 146 20 1 1 119 1 146 5.08e-68 201

Find 83 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTTGATAGGGCATTTA+TGG 0.120191 contig383end:-13148 MsG0080048638.01.T02:intron
GTCGCATTTGCCAGCGTTTA+AGG 0.191698 contig383end:-13124 MsG0080048638.01.T02:CDS
AGCTGAAGCTATTGGTCTTT+TGG 0.223241 contig383end:-16574 MsG0080048638.01.T01:CDS
CCCAAGAATCTTACTGTAAA+AGG 0.232139 contig383end:+13038 None:intergenic
TCGGCTATTATTGAGGAAAT+TGG 0.250466 contig383end:-18986 MsG0080048638.01.T01:CDS
CACACACCACTCGGTCATTA+TGG 0.253183 contig383end:+12942 None:intergenic
CTACTCCTCTGCCACTGTTT+TGG 0.282436 contig383end:-16598 MsG0080048638.01.T01:CDS
AATCCTCCAACTAATGAAAT+TGG 0.287287 contig383end:-16474 MsG0080048638.01.T01:CDS
TTATTGAGGAAATTGGATTT+AGG 0.315246 contig383end:-18979 MsG0080048638.01.T01:CDS
CGGAGGCTCTGTGCGGCGTT+AGG 0.325781 contig383end:+15261 None:intergenic
GACAACTGCTTTGAAATATT+AGG 0.339185 contig383end:-12795 MsG0080048638.01.T02:exon
CCCTTCACATACGCAAATAC+TGG 0.360586 contig383end:+18908 None:intergenic
AGATGGCATTGCGAGGAGTT+TGG 0.367673 contig383end:-15198 MsG0080048638.01.T01:three_prime_UTR
CGTTGTTAGCTATAGCGATT+GGG 0.368754 contig383end:-15161 MsG0080048638.01.T01:three_prime_UTR
AAATCACCAATTTCATTAGT+TGG 0.372594 contig383end:+16468 None:intergenic
TCCCAGTGCATTCCTTAGCC+TGG 0.373420 contig383end:+12880 None:intergenic
GAGGAAATTGGATTTAGGTT+TGG 0.387509 contig383end:-18974 MsG0080048638.01.T01:CDS
CTGTGTGGACAACAAGATTC+TGG 0.390989 contig383end:-16517 MsG0080048638.01.T01:CDS
AGTGGTGTGTGTGAAGAATA+TGG 0.393785 contig383end:-12930 MsG0080048638.01.T02:CDS
ACCTTGCACGCTAGGGTGTT+TGG 0.399445 contig383end:+12823 None:intergenic
GGAGGCTCTGTGCGGCGTTA+GGG 0.401058 contig383end:+15262 None:intergenic
TATGGTGTAGGAAGAAGTTT+TGG 0.406661 contig383end:-19083 MsG0080048638.01.T01:intron
AGTCTGGCTTAGACTTTGTT+CGG 0.410401 contig383end:-19005 MsG0080048638.01.T01:CDS
TGTTGTTTGGCGCTATTGCC+AGG 0.418369 contig383end:-12678 MsG0080048638.01.T02:three_prime_UTR
GCTTAAGTTCTCATGTTGTT+TGG 0.421272 contig383end:-12691 MsG0080048638.01.T02:three_prime_UTR
AAATTTCCGCTACATATGTA+TGG 0.438565 contig383end:-19101 None:intergenic
TTAATCAAATATCTGTGAAC+TGG 0.439984 contig383end:-12717 MsG0080048638.01.T02:three_prime_UTR
GTCCATGTACCTTGCACGCT+AGG 0.449503 contig383end:+12815 None:intergenic
TTCATTAGTTGGAGGATTGG+TGG 0.452778 contig383end:+16479 None:intergenic
ATCTGATGAACGGCGGTTGT+TGG 0.454816 contig383end:+15217 None:intergenic
AATTTCATTAGTTGGAGGAT+TGG 0.464149 contig383end:+16476 None:intergenic
GTGGAAGTAGCAGAGGCATT+AGG 0.465860 contig383end:-15138 MsG0080048638.01.T01:three_prime_UTR
GCATGCAGAAGTATCTCTTC+CGG 0.466200 contig383end:+12905 None:intergenic
GGAGGCGAACCCTCAGTTAG+AGG 0.466422 contig383end:-13103 MsG0080048638.01.T02:CDS
ACTTTGTTCGGCTATTATTG+AGG 0.497240 contig383end:-18993 MsG0080048638.01.T01:CDS
TGATTAACTGACCAGAGAAA+AGG 0.500162 contig383end:+12733 None:intergenic
ACCCTAGCGTGCAAGGTACA+TGG 0.511271 contig383end:-12817 MsG0080048638.01.T02:CDS
TCGTTGTTAGCTATAGCGAT+TGG 0.511918 contig383end:-15162 MsG0080048638.01.T01:three_prime_UTR
TGGTCAGCATCCACATCTAA+AGG 0.514097 contig383end:-13061 MsG0080048638.01.T02:CDS
TTCTGCATGCAACCAGGCTA+AGG 0.518615 contig383end:-12892 MsG0080048638.01.T02:CDS
AACCAGGCTAAGGAATGCAC+TGG 0.528014 contig383end:-12882 MsG0080048638.01.T02:CDS
AGCTTCCAAAACAGTGGCAG+AGG 0.529811 contig383end:+16593 None:intergenic
CCGCTACATATGTATGGTGT+AGG 0.531357 contig383end:-19095 None:intergenic
CTGTAAAAGGCCTTTAGATG+TGG 0.538554 contig383end:+13051 None:intergenic
TACAAACTAACAATATATAA+CGG 0.542968 contig383end:+12566 None:intergenic
AACAACCGCCGTTCATCAGA+TGG 0.544181 contig383end:-15215 MsG0080048638.01.T01:three_prime_UTR
ATGGTGTTTAACTGAAATCC+TGG 0.546587 contig383end:+12660 None:intergenic
GTTGGACGGCTGACGGTGAT+CGG 0.546998 contig383end:+15235 None:intergenic
GGGTTCGCCTCCTTAAACGC+TGG 0.551134 contig383end:+13114 None:intergenic
GGCGGTTGTTGGACGGCTGA+CGG 0.551269 contig383end:+15228 None:intergenic
TCCATGTACCTTGCACGCTA+GGG 0.551964 contig383end:+12816 None:intergenic
GATTAACTATCAGCTGATTG+TGG 0.553497 contig383end:-12612 MsG0080048638.01.T02:three_prime_UTR
CGGCTGACGGTGATCGGAGA+CGG 0.561368 contig383end:+15241 None:intergenic
ACCAAACACCCTAGCGTGCA+AGG 0.562815 contig383end:-12824 MsG0080048638.01.T02:CDS
TCACCAATTTCATTAGTTGG+AGG 0.570224 contig383end:+16471 None:intergenic
GATGAACGGCGGTTGTTGGA+CGG 0.571640 contig383end:+15221 None:intergenic
TAGGTTTGGTATCTATGAAG+AGG 0.582054 contig383end:-18960 MsG0080048638.01.T01:CDS
TCAGTGTCCACCTCTAACTG+AGG 0.586148 contig383end:+13093 None:intergenic
ACACTTAAAAGACTAAGCTA+TGG 0.587092 contig383end:+12641 None:intergenic
GTGTGTGAAGAATATGGATC+CGG 0.590195 contig383end:-12924 MsG0080048638.01.T02:CDS
GGCTAAGGAATGCACTGGGA+AGG 0.590269 contig383end:-12877 MsG0080048638.01.T02:CDS
GTGGACACTGAAATGATTCG+TGG 0.592382 contig383end:-13081 MsG0080048638.01.T02:CDS
AGATACTTCTGCATGCAACC+AGG 0.597112 contig383end:-12898 MsG0080048638.01.T02:CDS
ACCAAGTAGAAAATTGCTTG+TGG 0.605840 contig383end:+16635 None:intergenic
CAGTGTCCACCTCTAACTGA+GGG 0.607705 contig383end:+13094 None:intergenic
GGATCGACTTAGCACTACTA+CGG 0.608740 contig383end:+12754 None:intergenic
TATTCTTCACACACACCACT+CGG 0.614073 contig383end:+12933 None:intergenic
GGCGAACCCTCAGTTAGAGG+TGG 0.624239 contig383end:-13100 MsG0080048638.01.T02:CDS
GTTGTTAGCTATAGCGATTG+GGG 0.643269 contig383end:-15160 MsG0080048638.01.T01:three_prime_UTR
GCATTTGCCAGCGTTTAAGG+AGG 0.645640 contig383end:-13121 MsG0080048638.01.T02:CDS
GAAGGAAAGTAATTAAGCTG+AGG 0.646557 contig383end:-12859 MsG0080048638.01.T02:CDS
ACCAGGCTAAGGAATGCACT+GGG 0.650150 contig383end:-12881 MsG0080048638.01.T02:CDS
GATTGGGGTGGAAGTAGCAG+AGG 0.657242 contig383end:-15145 MsG0080048638.01.T01:three_prime_UTR
AGCTTCAGCTTCCAAAACAG+TGG 0.662919 contig383end:+16587 None:intergenic
TATAACGGAGTAAACAAACT+CGG 0.668327 contig383end:+12581 None:intergenic
GTTAGCTATAGCGATTGGGG+TGG 0.672048 contig383end:-15157 MsG0080048638.01.T01:three_prime_UTR
TCGCAATGCCATCTGATGAA+CGG 0.675132 contig383end:+15207 None:intergenic
GTTCATCAGATGGCATTGCG+AGG 0.675557 contig383end:-15205 MsG0080048638.01.T01:three_prime_UTR
TCAATCGGAGAAAACTAACG+TGG 0.702688 contig383end:+15320 None:intergenic
CTGACGGTGATCGGAGACGG+AGG 0.714407 contig383end:+15244 None:intergenic
TCGGAGACGGAGGCTCTGTG+CGG 0.716410 contig383end:+15254 None:intergenic
CAATGCCATCTGATGAACGG+CGG 0.721466 contig383end:+15210 None:intergenic
AGAGAACCATAATGACCGAG+TGG 0.735330 contig383end:-12948 MsG0080048638.01.T02:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAAATGAAAACTTT+CGG + contig383end:16583-16602 None:intergenic 10.0%
!! AATTTAATTAAGGAAAATTT+AGG - contig383end:14305-14324 MsG0080048638.01.T02:intron 10.0%
!! AATTTAATTAAGGAAAATTT+AGG + contig383end:14324-14305 None:intergenic 10.0%
!! TAAAGAATAAAAAGAATTAA+TGG - contig383end:14330-14349 MsG0080048638.01.T02:intron 10.0%
!!! AAAGTTTTCATTTTTTTATT+TGG - contig383end:16583-16602 MsG0080048638.01.T01:CDS 10.0%
!!! AAGTTTTCATTTTTTTATTT+GGG - contig383end:16584-16603 MsG0080048638.01.T01:CDS 10.0%
!!! ATCTCATATATTTTTATTTA+TGG + contig383end:13878-13897 None:intergenic 10.0%
!!! CTTTTATATTTAAAAAAGTA+AGG - contig383end:15571-15590 MsG0080048638.01.T01:intron 10.0%
!!! TATTTTTAATTAAAAGAGTT+GGG - contig383end:16269-16288 MsG0080048638.01.T01:intron 10.0%
!!! TTAGTTTTAAATATTTGATA+GGG - contig383end:17665-17684 MsG0080048638.01.T01:intron 10.0%
!!! TTATTTTTAATTAAAAGAGT+TGG - contig383end:16268-16287 MsG0080048638.01.T01:intron 10.0%
!!! TTTAGTTTTAAATATTTGAT+AGG - contig383end:18466-18485 MsG0080048638.01.T01:intron 10.0%
!!! TTTTTAAAAAACTGTTTTTA+TGG - contig383end:17381-17400 MsG0080048638.01.T01:intron 10.0%
!!! TTTTTTAAAAACTGTTTTTA+TGG - contig383end:18175-18194 MsG0080048638.01.T01:intron 10.0%
!!! TTTTTTAACGTTAAAATTTT+AGG + contig383end:16233-16252 None:intergenic 10.0%
!! AAAATATAATCATAACCATA+AGG + contig383end:13019-13038 None:intergenic 15.0%
!! AAATCAAACTGATATAATAT+TGG - contig383end:17087-17106 MsG0080048638.01.T01:intron 15.0%
!! AATATTTCAAGCATTATTAT+TGG + contig383end:14561-14580 None:intergenic 15.0%
!! ATAAAAAAATGAAAACTTTC+GGG + contig383end:16582-16601 None:intergenic 15.0%
!! ATTATGTTTAATTCCTTAAA+AGG - contig383end:14270-14289 MsG0080048638.01.T02:intron 15.0%
!! ATTGAATATGTAGTAATTAT+AGG + contig383end:13901-13920 None:intergenic 15.0%
!! GTCAAAAAAAAAAAAAAAAC+AGG + contig383end:13657-13676 None:intergenic 15.0%
!! TACAAACTAACAATATATAA+CGG + contig383end:19061-19080 None:intergenic 15.0%
!! TTTATATGAACTATCTATTA+AGG - contig383end:14630-14649 MsG0080048638.01.T02:intron 15.0%
!!! AAATGTTTAGAATGTTATTT+TGG + contig383end:17984-18003 None:intergenic 15.0%
!!! AACTAAATACATCTTTTTTT+AGG - contig383end:15392-15411 MsG0080048638.01.T01:intron 15.0%
!!! ACTCTAAATGAATAAAATTT+TGG - contig383end:15885-15904 MsG0080048638.01.T01:intron 15.0%
!!! ATTTAGGTTTAAAGAATTAA+TGG + contig383end:13685-13704 None:intergenic 15.0%
!!! ATTTTTTTATTTGGGTATTT+AGG - contig383end:16592-16611 MsG0080048638.01.T01:CDS 15.0%
!!! CTTAGTTTTAAATATTTGAT+AGG - contig383end:17664-17683 MsG0080048638.01.T01:intron 15.0%
!!! GGTTTTATTTGTAAAAAAAA+AGG - contig383end:13968-13987 MsG0080048638.01.T02:intron 15.0%
!!! TTAATTCTTTAATCCTTTTA+AGG + contig383end:14286-14305 None:intergenic 15.0%
!!! TTTTATTGAATCATCATTTT+AGG - contig383end:14159-14178 MsG0080048638.01.T02:intron 15.0%
!!! TTTTGTCAAAAAAAAAAAAC+AGG - contig383end:14354-14373 MsG0080048638.01.T02:intron 15.0%
!!! TTTTTTAAAAATTTCTGCAT+CGG + contig383end:17372-17391 None:intergenic 15.0%
!!! TTTTTTTAAGAATAGAAAAG+TGG - contig383end:13947-13966 MsG0080048638.01.T02:intron 15.0%
!! AAAAAAAAAAAACAGGTTTG+AGG - contig383end:14361-14380 MsG0080048638.01.T02:intron 20.0%
!! AAAAAAAAAAAACAGGTTTG+AGG + contig383end:14380-14361 None:intergenic 20.0%
!! AAAAAGAATCGTGTATTTAA+TGG + contig383end:13820-13839 None:intergenic 20.0%
!! AAATCCATATTTCTTCATTA+TGG + contig383end:13792-13811 None:intergenic 20.0%
!! AACATACAAAATGTAATGAA+TGG - contig383end:14815-14834 MsG0080048638.01.T02:intron 20.0%
!! ATAGTTAAGATAAATAATCC+AGG - contig383end:15453-15472 MsG0080048638.01.T01:intron 20.0%
!! ATTACACAATATTACATAGA+TGG + contig383end:13090-13109 None:intergenic 20.0%
!! TAAATGATTTCAAAACTTCA+GGG + contig383end:17248-17267 None:intergenic 20.0%
!! TAGTTAAGATAAATAATCCA+GGG - contig383end:15454-15473 MsG0080048638.01.T01:intron 20.0%
!! TTAAATGATTTCAAAACTTC+AGG + contig383end:17249-17268 None:intergenic 20.0%
!! TTAAGAATGAAATTGATGAA+TGG - contig383end:15771-15790 MsG0080048638.01.T01:intron 20.0%
!! TTTAATTCTAATACGATCAT+GGG - contig383end:14943-14962 MsG0080048638.01.T02:intron 20.0%
!!! AAATTGTAGTTTTCAAAGTT+AGG - contig383end:16156-16175 MsG0080048638.01.T01:intron 20.0%
!!! AAATTGTAGTTTTCAAAGTT+AGG + contig383end:16175-16156 None:intergenic 20.0%
!!! AACTTTGAAAACTACAATTT+TGG - contig383end:15962-15981 MsG0080048638.01.T01:intron 20.0%
!!! AACTTTGAAAACTACAATTT+TGG + contig383end:15981-15962 None:intergenic 20.0%
!!! AATTGTAGTTTTCAAAGTTA+GGG - contig383end:16157-16176 MsG0080048638.01.T01:intron 20.0%
!!! AATTGTAGTTTTCAAAGTTA+GGG + contig383end:16176-16157 None:intergenic 20.0%
!!! AGCTTTATGTAATTTTGTTA+TGG - contig383end:12688-12707 MsG0080048638.01.T02:three_prime_UTR 20.0%
!!! CAACATTTTGAAAAGATAAT+GGG - contig383end:16067-16086 MsG0080048638.01.T01:intron 20.0%
!!! GAAATCATTTAAAATCTGAA+TGG - contig383end:17257-17276 MsG0080048638.01.T01:intron 20.0%
!!! GCTTTATGTAATTTTGTTAT+GGG - contig383end:12689-12708 MsG0080048638.01.T02:three_prime_UTR 20.0%
!!! TTTTTGTTTTACTAGTTACT+AGG - contig383end:16921-16940 MsG0080048638.01.T01:intron 20.0%
! AAAATAGTATGCATCAGATT+CGG + contig383end:18153-18172 None:intergenic 25.0%
! AAATCACCAATTTCATTAGT+TGG + contig383end:15159-15178 None:intergenic 25.0%
! AAGCATATTCAAGAAATTTG+TGG - contig383end:12938-12957 MsG0080048638.01.T02:CDS 25.0%
! AATATTTGATAGGCCATTTA+TGG - contig383end:17674-17693 MsG0080048638.01.T01:intron 25.0%
! ACGTTTCTTCATTAAAAAGA+GGG - contig383end:13922-13941 MsG0080048638.01.T02:intron 25.0%
! AGCATATTCAAGAAATTTGT+GGG - contig383end:12939-12958 MsG0080048638.01.T02:CDS 25.0%
! AGTTAAGATAAATAATCCAG+GGG - contig383end:15455-15474 MsG0080048638.01.T01:intron 25.0%
! ATATATCGTCTAATTGTGAA+TGG - contig383end:12758-12777 MsG0080048638.01.T02:three_prime_UTR 25.0%
! ATTGTTAAAAGGTTGTGATT+TGG + contig383end:18282-18301 None:intergenic 25.0%
! CTACATAGCTTCAATAATAT+TGG - contig383end:17139-17158 MsG0080048638.01.T01:intron 25.0%
! CTTTAATTCTAATACGATCA+TGG - contig383end:14942-14961 MsG0080048638.01.T02:intron 25.0%
! GATCGTATTAGAATTAAAGA+TGG + contig383end:14941-14960 None:intergenic 25.0%
! TCTCGAATTTGATTGTTAAA+AGG + contig383end:18293-18312 None:intergenic 25.0%
! TTAATCAAATATCTGTGAAC+TGG - contig383end:18907-18926 MsG0080048638.01.T01:intron 25.0%
! TTATTGAGGAAATTGGATTT+AGG - contig383end:12645-12664 MsG0080048638.01.T02:three_prime_UTR 25.0%
! TTTGATATTGATACTATCGT+AGG - contig383end:13036-13055 MsG0080048638.01.T02:intron 25.0%
!! AAGCAACAAAGTTTTACATT+CGG + contig383end:15187-15206 None:intergenic 25.0%
!! AATATTTGATAGGGCATTTA+TGG - contig383end:18476-18495 MsG0080048638.01.T01:intron 25.0%
!! AGATTGATTACAGTCTTATA+TGG - contig383end:16895-16914 MsG0080048638.01.T01:intron 25.0%
!! ATTGTAGTTTTCAAAGTTAG+GGG - contig383end:16158-16177 MsG0080048638.01.T01:intron 25.0%
!! ATTGTAGTTTTCAAAGTTAG+GGG + contig383end:16177-16158 None:intergenic 25.0%
!! CTTTCAAAAAATTGCGATTT+TGG + contig383end:16185-16204 None:intergenic 25.0%
!! GATTTTTCTCAAATTACTAC+CGG + contig383end:17072-17091 None:intergenic 25.0%
!! TGAATTTTACCTAGTACTAA+AGG - contig383end:18369-18388 MsG0080048638.01.T01:intron 25.0%
!! TTATTCATTTAGAGTCATTG+TGG + contig383end:15880-15899 None:intergenic 25.0%
!! TTATTCGTTTAACTTCTTCT+CGG - contig383end:13356-13375 MsG0080048638.01.T02:intron 25.0%
!! TTTGGGATATACATGATATT+TGG - contig383end:12799-12818 MsG0080048638.01.T02:CDS 25.0%
!!! AAAACTGTTTTTATGGTTTG+AGG - contig383end:17388-17407 MsG0080048638.01.T01:intron 25.0%
!!! AAAATTGTTGCTTTTTTCCT+TGG - contig383end:17915-17934 MsG0080048638.01.T01:intron 25.0%
!!! AGCAATTTTGTTATTATTGC+TGG + contig383end:13462-13481 None:intergenic 25.0%
!!! ATCGCAATTTTTTGAAAGAT+AGG - contig383end:16187-16206 MsG0080048638.01.T01:intron 25.0%
!!! GATTTTGAGAAATTCTCAAT+CGG + contig383end:16322-16341 None:intergenic 25.0%
!!! GCAACATTTTGAAAAGATAA+TGG - contig383end:16066-16085 MsG0080048638.01.T01:intron 25.0%
!!! GCAATTTTGTTATTATTGCT+GGG + contig383end:13461-13480 None:intergenic 25.0%
!!! TCGCAATTTTTTGAAAGATA+GGG - contig383end:16188-16207 MsG0080048638.01.T01:intron 25.0%
!!! TCTTGCTTTTATTCAAATAG+TGG - contig383end:16649-16668 MsG0080048638.01.T01:intron 25.0%
!!! TTAGGTTTGTTGAATTATTG+TGG - contig383end:16610-16629 MsG0080048638.01.T01:CDS 25.0%
!!! TTTAAGGACATTTGAAGTTT+TGG - contig383end:12584-12603 MsG0080048638.01.T02:three_prime_UTR 25.0%
!!! TTTTGATATTGCCATTTTGA+TGG + contig383end:15079-15098 None:intergenic 25.0%
AAACATGTATTTGATCCTCA+TGG + contig383end:14873-14892 None:intergenic 30.0%
AACAAATGACACTACATAGT+AGG + contig383end:15217-15236 None:intergenic 30.0%
AACAATCTCCTATTCAAAAC+AGG + contig383end:17641-17660 None:intergenic 30.0%
AACTCAAATGTCACATATTC+AGG + contig383end:15636-15655 None:intergenic 30.0%
AATCCTCCAACTAATGAAAT+TGG - contig383end:15150-15169 MsG0080048638.01.T01:three_prime_UTR 30.0%
AATTTCATTAGTTGGAGGAT+TGG + contig383end:15151-15170 None:intergenic 30.0%
ACACTTAAAAGACTAAGCTA+TGG + contig383end:18986-19005 None:intergenic 30.0%
ACATATTTCCCTTATGTTAG+GGG - contig383end:16097-16116 MsG0080048638.01.T01:intron 30.0%
AGACATATTTCCCTTATGTT+AGG - contig383end:16095-16114 MsG0080048638.01.T01:intron 30.0%
AGGTACTTCACAAAAAACAT+GGG + contig383end:15313-15332 None:intergenic 30.0%
ATAACGAGTGACATAATTCA+GGG - contig383end:15486-15505 MsG0080048638.01.T01:intron 30.0%
ATGAGGATCAAATACATGTT+TGG - contig383end:14872-14891 MsG0080048638.01.T02:intron 30.0%
CACGTTTCTTCATTAAAAAG+AGG - contig383end:13921-13940 MsG0080048638.01.T02:intron 30.0%
CCTAGGAAAATTGAAAACTT+CGG - contig383end:13605-13624 MsG0080048638.01.T02:intron 30.0%
CGTATTAGAATTAAAGATGG+TGG + contig383end:14938-14957 None:intergenic 30.0%
CTCTCGTATTTCTTCATTTA+TGG - contig383end:14214-14233 MsG0080048638.01.T02:intron 30.0%
GACATATTTCCCTTATGTTA+GGG - contig383end:16096-16115 MsG0080048638.01.T01:intron 30.0%
GTTGCCATAATGAAGAAATA+TGG - contig383end:13785-13804 MsG0080048638.01.T02:intron 30.0%
TAACAATCAAATTCGAGAGA+AGG - contig383end:18295-18314 MsG0080048638.01.T01:intron 30.0%
TAACTGCCGAATTATAAAAC+CGG - contig383end:13543-13562 MsG0080048638.01.T02:intron 30.0%
TAGGTACTTCACAAAAAACA+TGG + contig383end:15314-15333 None:intergenic 30.0%
TATCTGCAATCAGTAGTTAA+TGG + contig383end:14186-14205 None:intergenic 30.0%
TATTCATAGCATATTGTTCC+AGG + contig383end:17600-17619 None:intergenic 30.0%
TCTACGTGATATGATAGTAT+AGG - contig383end:16994-17013 MsG0080048638.01.T01:intron 30.0%
TCTCAGACTTGATTGTTAAA+AGG + contig383end:17498-17517 None:intergenic 30.0%
TGATAGTATACCTCAGAAAA+AGG + contig383end:13243-13262 None:intergenic 30.0%
TTGTAATGTTCAACACTTTG+TGG - contig383end:14771-14790 MsG0080048638.01.T02:intron 30.0%
TTTAGGCTAAAGTACAACTT+TGG + contig383end:16216-16235 None:intergenic 30.0%
TTTGAGGACAATGCTAATAA+CGG - contig383end:17404-17423 MsG0080048638.01.T01:intron 30.0%
! AAAGTTCAAACCTTTTTCTG+AGG - contig383end:13230-13249 MsG0080048638.01.T02:intron 30.0%
! AGCAACAAAGTTTTACATTC+GGG + contig383end:15186-15205 None:intergenic 30.0%
! ATATGTATGCTCACAACTTT+TGG + contig383end:13159-13178 None:intergenic 30.0%
! CCTTTTACAGTAAGATTCTT+GGG - contig383end:18586-18605 MsG0080048638.01.T01:intron 30.0%
! CTTTCAAAAAGTTGCGATTT+TGG - contig383end:15933-15952 MsG0080048638.01.T01:intron 30.0%
! GTTAGGGTTTCAAATTTTCA+GGG + contig383end:16349-16368 None:intergenic 30.0%
! TAAGGATGGTTGATATATTC+TGG - contig383end:12891-12910 MsG0080048638.01.T02:CDS 30.0%
! TATAACGGAGTAAACAAACT+CGG + contig383end:19046-19065 None:intergenic 30.0%
! TATGTATGCTCACAACTTTT+GGG + contig383end:13158-13177 None:intergenic 30.0%
! TATTTTTCCTTTTGCCTGAT+TGG - contig383end:18237-18256 MsG0080048638.01.T01:intron 30.0%
! TGCATTTTACCTAGTACTAA+AGG - contig383end:17574-17593 MsG0080048638.01.T01:intron 30.0%
! TGTAATTGATGATTCTCTTG+TGG - contig383end:18648-18667 MsG0080048638.01.T01:intron 30.0%
! TTGGTATGATTTTGTTAGTC+TGG - contig383end:12560-12579 MsG0080048638.01.T02:three_prime_UTR 30.0%
! TTGTAGTTTTCAAAGTTAGG+GGG - contig383end:16159-16178 MsG0080048638.01.T01:intron 30.0%
!! AACTTTTGGGTGATAATACA+GGG + contig383end:13145-13164 None:intergenic 30.0%
!! ATGTAGTGTCATTTGTTAAG+AGG - contig383end:15220-15239 MsG0080048638.01.T01:three_prime_UTR 30.0%
!! CGCAACTTTTTGAAAGATAA+GGG + contig383end:15929-15948 None:intergenic 30.0%
!! GACAACTGCTTTGAAATATT+AGG - contig383end:18829-18848 MsG0080048638.01.T01:intron 30.0%
!! GCAACTTTTTGAAAGATAAG+GGG + contig383end:15928-15947 None:intergenic 30.0%
!! TATTCTCTCCTGTTTTGAAT+AGG - contig383end:17630-17649 MsG0080048638.01.T01:intron 30.0%
!! TCAGAGGCATTGAAAAAATA+TGG - contig383end:18070-18089 MsG0080048638.01.T01:intron 30.0%
!! TCGCAACTTTTTGAAAGATA+AGG + contig383end:15930-15949 None:intergenic 30.0%
!! TTTTTCAATGATTGACTCCT+AGG + contig383end:17732-17751 None:intergenic 30.0%
!!! ATTTAGTTTTTCCGTCAAGT+TGG + contig383end:15707-15726 None:intergenic 30.0%
!!! ATTTTGTTAGTCTGGCTTTA+AGG - contig383end:12568-12587 MsG0080048638.01.T02:three_prime_UTR 30.0%
!!! CGCAATTTTTTGAAAGATAG+GGG - contig383end:16189-16208 MsG0080048638.01.T01:intron 30.0%
!!! GCAATTTTTTGAAAGATAGG+GGG - contig383end:16190-16209 MsG0080048638.01.T01:intron 30.0%
!!! TATTAGTGATTTTGGAGTCA+TGG - contig383end:17761-17780 MsG0080048638.01.T01:intron 30.0%
!!! TCTTTTGGAATCCATCAAAA+TGG - contig383end:15065-15084 MsG0080048638.01.T02:intron 30.0%
!!! TGTTATTTTGGTTCTAGCAA+TGG + contig383end:17972-17991 None:intergenic 30.0%
!!! TTTTGTTGTTATTGTTGTCG+TGG - contig383end:13268-13287 MsG0080048638.01.T02:intron 30.0%
AAGAATCCCCTATTCAAAAC+AGG + contig383end:18443-18462 None:intergenic 35.0%
AATCTCAATCATTATGTGCG+TGG + contig383end:16688-16707 None:intergenic 35.0%
ACCAAGTAGAAAATTGCTTG+TGG + contig383end:14992-15011 None:intergenic 35.0%
ACTTTGTTCGGCTATTATTG+AGG - contig383end:12631-12650 MsG0080048638.01.T02:three_prime_UTR 35.0%
AGAAATTTGTGGGTAATGTG+TGG - contig383end:12949-12968 MsG0080048638.01.T02:CDS 35.0%
AGAGCATATTTCCCTAAACA+TGG - contig383end:16126-16145 MsG0080048638.01.T01:intron 35.0%
AGCATATTTCCCTAAACATG+GGG - contig383end:16128-16147 MsG0080048638.01.T01:intron 35.0%
AGTCAAAGCAACTGAAAGAT+GGG + contig383end:18049-18068 None:intergenic 35.0%
ATCTCAATCATTATGTGCGT+GGG + contig383end:16687-16706 None:intergenic 35.0%
ATGGTGTTTAACTGAAATCC+TGG + contig383end:18967-18986 None:intergenic 35.0%
CAAATTTCAACTCGATTGCT+AGG - contig383end:17178-17197 MsG0080048638.01.T01:intron 35.0%
CATATTTCCCTTATGTTAGG+GGG - contig383end:16098-16117 MsG0080048638.01.T01:intron 35.0%
CCCAAGAATCTTACTGTAAA+AGG + contig383end:18589-18608 None:intergenic 35.0%
CTAAGAAGTCAGTAAAACCA+AGG + contig383end:17935-17954 None:intergenic 35.0%
CTGAGGAAATCTGAAAACTT+CGG + contig383end:14406-14425 None:intergenic 35.0%
GAAATTTGTGGGTAATGTGT+GGG - contig383end:12950-12969 MsG0080048638.01.T02:intron 35.0%
GAAGGAAAGTAATTAAGCTG+AGG - contig383end:18765-18784 MsG0080048638.01.T01:intron 35.0%
GAGCATATTTCCCTAAACAT+GGG - contig383end:16127-16146 MsG0080048638.01.T01:intron 35.0%
GATAACGAGTGACATAATTC+AGG - contig383end:15485-15504 MsG0080048638.01.T01:intron 35.0%
GATTAACTATCAGCTGATTG+TGG - contig383end:19012-19031 MsG0080048638.01.T01:intron 35.0%
GCTAAGAATAACGTTGTAGA+TGG - contig383end:18210-18229 MsG0080048638.01.T01:intron 35.0%
GCTAATAACGGCATTGTAAA+TGG - contig383end:17416-17435 MsG0080048638.01.T01:intron 35.0%
GCTTAAGTTCTCATGTTGTT+TGG - contig383end:18933-18952 MsG0080048638.01.T01:CDS 35.0%
GGTACTTCACAAAAAACATG+GGG + contig383end:15312-15331 None:intergenic 35.0%
GTACTTCACAAAAAACATGG+GGG + contig383end:15311-15330 None:intergenic 35.0%
TAACAATCAAGTCTGAGAGA+AGG - contig383end:17500-17519 MsG0080048638.01.T01:intron 35.0%
TAACTGCCGAATTATGAAAC+CGG + contig383end:14468-14487 None:intergenic 35.0%
TAATGTTCAACACTTTGTGG+AGG - contig383end:14774-14793 MsG0080048638.01.T02:intron 35.0%
TAGTCAAAGCAACTGAAAGA+TGG + contig383end:18050-18069 None:intergenic 35.0%
TAGTGTGTATTACCGAACAA+TGG - contig383end:16808-16827 MsG0080048638.01.T01:intron 35.0%
TATTCTTCTTGTTGCCTGAT+TGG - contig383end:17443-17462 MsG0080048638.01.T01:intron 35.0%
TCACCAATTTCATTAGTTGG+AGG + contig383end:15156-15175 None:intergenic 35.0%
TCAGGCAAAAGGAAAAATAC+AGG + contig383end:18236-18255 None:intergenic 35.0%
TCGGCTATTATTGAGGAAAT+TGG - contig383end:12638-12657 MsG0080048638.01.T02:three_prime_UTR 35.0%
TGATTAACTGACCAGAGAAA+AGG + contig383end:18894-18913 None:intergenic 35.0%
TTAACTACCGAGGAAAACTT+CGG - contig383end:13572-13591 MsG0080048638.01.T02:intron 35.0%
TTAACTACCGAGGAAAACTT+CGG + contig383end:13591-13572 None:intergenic 35.0%
TTATTGAAGCTATGTAGCAC+CGG + contig383end:17136-17155 None:intergenic 35.0%
TTGAACAAATCGCCATTGTT+CGG + contig383end:16823-16842 None:intergenic 35.0%
TTTACCTAGTACTAAAGGCT+CGG - contig383end:18374-18393 MsG0080048638.01.T01:intron 35.0%
! AAAAGACGTTTTTACCCCTT+CGG - contig383end:13516-13535 MsG0080048638.01.T02:intron 35.0%
! AAAAGACGTTTTTACCCCTT+CGG + contig383end:13535-13516 None:intergenic 35.0%
! AACTTTGAAAACTGCTGAGA+AGG - contig383end:15991-16010 MsG0080048638.01.T01:intron 35.0%
! ATCAAAAGCTTTTCACTGTG+TGG - contig383end:15092-15111 MsG0080048638.01.T02:intron 35.0%
! ATTCGTGAAGAGGGAAATTT+TGG - contig383end:12781-12800 MsG0080048638.01.T02:exon 35.0%
! CAGCAGTTTTCAAAGTTAGA+GGG + contig383end:15988-16007 None:intergenic 35.0%
! CCGAAGTTTTCAATTTTCCT+AGG + contig383end:13608-13627 None:intergenic 35.0%
! CGTTAGGGTTTCAAATTTTC+AGG + contig383end:16350-16369 None:intergenic 35.0%
! CTAGCACGTATTAGTGATTT+TGG - contig383end:17753-17772 MsG0080048638.01.T01:intron 35.0%
! CTTTTAACCCCCTAACATAA+GGG + contig383end:16108-16127 None:intergenic 35.0%
! GACCCCTTATCTTTTCAAAA+TGG + contig383end:16040-16059 None:intergenic 35.0%
! GAGGAAATTGGATTTAGGTT+TGG - contig383end:12650-12669 MsG0080048638.01.T02:three_prime_UTR 35.0%
! GCCTTTTACAGTAAGATTCT+TGG - contig383end:18585-18604 MsG0080048638.01.T01:intron 35.0%
! TAGGTTTGGTATCTATGAAG+AGG - contig383end:12664-12683 MsG0080048638.01.T02:three_prime_UTR 35.0%
! TATGGTGTAGGAAGAAGTTT+TGG - contig383end:12541-12560 MsG0080048638.01.T02:three_prime_UTR 35.0%
! TCACATGTTAGAGATTTGCT+AGG - contig383end:13118-13137 MsG0080048638.01.T02:CDS 35.0%
! TCAGCAGTTTTCAAAGTTAG+AGG + contig383end:15989-16008 None:intergenic 35.0%
! TCCACAAGCAATTTTCTACT+TGG - contig383end:14988-15007 MsG0080048638.01.T02:intron 35.0%
! TCTAATACGATCATGGGTTA+TGG - contig383end:14949-14968 MsG0080048638.01.T02:intron 35.0%
! TCTTTTAACCCCCTAACATA+AGG + contig383end:16109-16128 None:intergenic 35.0%
! TTCGTGAAGAGGGAAATTTT+GGG - contig383end:12782-12801 MsG0080048638.01.T02:exon 35.0%
! TTGTTATTGTTGTCGTGGAA+TGG - contig383end:13273-13292 MsG0080048638.01.T02:intron 35.0%
!! ACTTTTGGGTGATAATACAG+GGG + contig383end:13144-13163 None:intergenic 35.0%
!! CAACTTTTGGGTGATAATAC+AGG + contig383end:13146-13165 None:intergenic 35.0%
!! GGACATTTGAAGTTTTGGTA+TGG - contig383end:12589-12608 MsG0080048638.01.T02:three_prime_UTR 35.0%
!! GGCCATTTTGAAAAGATAAG+GGG - contig383end:16035-16054 MsG0080048638.01.T01:intron 35.0%
!! GGGCCATTTTGAAAAGATAA+GGG - contig383end:16034-16053 MsG0080048638.01.T01:intron 35.0%
!! TTTTGGCTAAAGTGCAACTT+TGG - contig383end:15902-15921 MsG0080048638.01.T01:intron 35.0%
!!! TTCAAAATGGCCCCTTTTTT+TGG + contig383end:16027-16046 None:intergenic 35.0%
!!! TTGGTATGGTTTTGTTAGTC+TGG - contig383end:12603-12622 MsG0080048638.01.T02:three_prime_UTR 35.0%
AGATTCGGAGTGTGATTACA+TGG + contig383end:18138-18157 None:intergenic 40.0%
AGTCAAAGCAACTGAAAGAC+TGG + contig383end:17284-17303 None:intergenic 40.0%
AGTGGTGTGTGTGAAGAATA+TGG - contig383end:18694-18713 MsG0080048638.01.T01:intron 40.0%
ATCTGTGAGTACAAAGCAGT+AGG + contig383end:15333-15352 None:intergenic 40.0%
CATATTTCCCTAAACATGGG+GGG - contig383end:16130-16149 MsG0080048638.01.T01:intron 40.0%
CATTTGATCCAACCTTATCG+AGG + contig383end:14904-14923 None:intergenic 40.0%
CCAGTATTTGCGTATGTGAA+GGG - contig383end:12716-12735 MsG0080048638.01.T02:three_prime_UTR 40.0%
CCTTACCACTGTAAGAACAT+CGG + contig383end:12876-12895 None:intergenic 40.0%
CGTAAAAAGGTTTATGGCCT+AGG - contig383end:17712-17731 MsG0080048638.01.T01:intron 40.0%
CGTTGTTAGCTATAGCGATT+GGG - contig383end:16463-16482 MsG0080048638.01.T01:CDS 40.0%
CTGTAAAAGGCCTTTAGATG+TGG + contig383end:18576-18595 None:intergenic 40.0%
GCATATTTCCCTAAACATGG+GGG - contig383end:16129-16148 MsG0080048638.01.T01:intron 40.0%
GCTGGGCACACAAAATATAA+AGG + contig383end:13444-13463 None:intergenic 40.0%
GGCAAATGTGACTCCATAAA+TGG + contig383end:17690-17709 None:intergenic 40.0%
GTGTGTGAAGAATATGGATC+CGG - contig383end:18700-18719 MsG0080048638.01.T01:intron 40.0%
GTTGTTAGCTATAGCGATTG+GGG - contig383end:16464-16483 MsG0080048638.01.T01:CDS 40.0%
GTTTGGACAAAACCTCGATA+AGG - contig383end:14889-14908 MsG0080048638.01.T02:intron 40.0%
TATTCTTCACACACACCACT+CGG + contig383end:18694-18713 None:intergenic 40.0%
TCAATCGGAGAAAACTAACG+TGG + contig383end:16307-16326 None:intergenic 40.0%
TCACATTTGCCAGCGTAAAA+AGG - contig383end:17699-17718 MsG0080048638.01.T01:intron 40.0%
TCCAGTATTTGCGTATGTGA+AGG - contig383end:12715-12734 MsG0080048638.01.T02:three_prime_UTR 40.0%
TCGTTGTTAGCTATAGCGAT+TGG - contig383end:16462-16481 MsG0080048638.01.T01:CDS 40.0%
TGCCAGCGTAAAAAGGTTTA+TGG - contig383end:17706-17725 MsG0080048638.01.T01:intron 40.0%
TGTATTTGATCCTCATGGTG+CGG + contig383end:14868-14887 None:intergenic 40.0%
TGTTCTTACAGTGGTAAGGA+TGG - contig383end:12877-12896 MsG0080048638.01.T02:CDS 40.0%
TTCATTAGTTGGAGGATTGG+TGG + contig383end:15148-15167 None:intergenic 40.0%
TTGCCACATCAGAATTGTTC+TGG + contig383end:18097-18116 None:intergenic 40.0%
TTGGAAGTGACATGAAGTCA+CGG + contig383end:18263-18282 None:intergenic 40.0%
TTGGTCTGCTTAACTGTTTC+TGG - contig383end:12818-12837 MsG0080048638.01.T02:CDS 40.0%
TTTACCTAGTACTAAAGGCC+TGG - contig383end:17579-17598 MsG0080048638.01.T01:intron 40.0%
! AAACAGGTTTGAGGTTTCCT+CGG - contig383end:14370-14389 MsG0080048638.01.T02:intron 40.0%
! AAACAGGTTTGAGGTTTCCT+CGG + contig383end:14389-14370 None:intergenic 40.0%
! AGTCTGGCTTAGACTTTGTT+CGG - contig383end:12619-12638 MsG0080048638.01.T02:three_prime_UTR 40.0%
! ATACCTTTGATCAGAAGTGC+CGG - contig383end:17114-17133 MsG0080048638.01.T01:intron 40.0%
! GAATTTGGTGGCTGTTCATT+GGG - contig383end:12982-13001 MsG0080048638.01.T02:intron 40.0%
! GACAATCAGAAGTAGCTTTG+TGG + contig383end:18347-18366 None:intergenic 40.0%
! GCGGAAAATAGCAGTTTGTT+TGG - contig383end:16732-16751 MsG0080048638.01.T01:intron 40.0%
! TATTTTCCGCGATCCACTAT+GGG + contig383end:16722-16741 None:intergenic 40.0%
! TCAGTTGCTTTGACTATCAG+AGG - contig383end:18054-18073 MsG0080048638.01.T01:intron 40.0%
! TCGTTTAACTTCTTCTCGGT+AGG - contig383end:13360-13379 MsG0080048638.01.T02:intron 40.0%
! TGCTGTTGACACATTAGCTT+TGG - contig383end:13478-13497 MsG0080048638.01.T02:intron 40.0%
! TGCTGTTGACACATTAGCTT+TGG + contig383end:13497-13478 None:intergenic 40.0%
! TGTGAATGGATTCGTGAAGA+GGG - contig383end:12772-12791 MsG0080048638.01.T02:three_prime_UTR 40.0%
! TTAACTGCCGAAGTTTTCCT+CGG - contig383end:14429-14448 MsG0080048638.01.T02:intron 40.0%
! TTCAGTTGCTTTGACTGAGA+GGG - contig383end:17288-17307 MsG0080048638.01.T01:intron 40.0%
! TTGTGAATGGATTCGTGAAG+AGG - contig383end:12771-12790 MsG0080048638.01.T02:three_prime_UTR 40.0%
! TTTACTGCCGAAGTTTTCCT+CGG + contig383end:13582-13601 None:intergenic 40.0%
! TTTCAGTTGCTTTGACTGAG+AGG - contig383end:17287-17306 MsG0080048638.01.T01:intron 40.0%
!! ATGCTCGCCTGTTTTGAATA+GGG - contig383end:18433-18452 MsG0080048638.01.T01:intron 40.0%
!! CTGCAGCCGGTTTTATAATT+CGG + contig383end:13552-13571 None:intergenic 40.0%
!! GGGGCCATTTTGAAAAGATA+AGG - contig383end:16033-16052 MsG0080048638.01.T01:intron 40.0%
!! TATGCTCGCCTGTTTTGAAT+AGG - contig383end:18432-18451 MsG0080048638.01.T01:intron 40.0%
!! TTGACACATTAGCTTTGGCT+AGG - contig383end:13483-13502 MsG0080048638.01.T02:intron 40.0%
!! TTGACACATTAGCTTTGGCT+AGG + contig383end:13502-13483 None:intergenic 40.0%
!!! AGCTGAAGCTATTGGTCTTT+TGG - contig383end:15050-15069 MsG0080048638.01.T02:intron 40.0%
!!! GTTTTGGAAGCTGAAGCTAT+TGG - contig383end:15042-15061 MsG0080048638.01.T02:intron 40.0%
ACTGAAAGATGGGTCCATTC+AGG + contig383end:18039-18058 None:intergenic 45.0%
ACTTCCGAGCCTTTAGTACT+AGG + contig383end:18381-18400 None:intergenic 45.0%
ACTTCGGCAGTAAACTACCT+AGG - contig383end:13588-13607 MsG0080048638.01.T02:intron 45.0%
AGAGAACCATAATGACCGAG+TGG - contig383end:18676-18695 MsG0080048638.01.T01:intron 45.0%
AGATACTTCTGCATGCAACC+AGG - contig383end:18726-18745 MsG0080048638.01.T01:intron 45.0%
AGCTTCAGCTTCCAAAACAG+TGG + contig383end:15040-15059 None:intergenic 45.0%
AGTACTAAAGGCTCGGAAGT+TGG - contig383end:18381-18400 MsG0080048638.01.T01:intron 45.0%
ATTCGGCAGTTAACTACCGA+AGG - contig383end:14476-14495 MsG0080048638.01.T02:intron 45.0%
ATTCGGCAGTTAACTACCGA+AGG + contig383end:14495-14476 None:intergenic 45.0%
CCCTTCACATACGCAAATAC+TGG + contig383end:12719-12738 None:intergenic 45.0%
CCGATGTTCTTACAGTGGTA+AGG - contig383end:12873-12892 MsG0080048638.01.T02:CDS 45.0%
CGACACGTGTCCAAAAAAAG+GGG - contig383end:16014-16033 MsG0080048638.01.T01:intron 45.0%
CTGTGTGGACAACAAGATTC+TGG - contig383end:15107-15126 MsG0080048638.01.T02:intron 45.0%
GAACAATTCTGCTGTGGCAA+TGG - contig383end:17331-17350 MsG0080048638.01.T01:intron 45.0%
GAAGCCACTTGAAACCTGAA+TGG - contig383end:18022-18041 MsG0080048638.01.T01:intron 45.0%
GCGACACGTGTCCAAAAAAA+GGG - contig383end:16013-16032 MsG0080048638.01.T01:intron 45.0%
GGACAAAACCTCGATAAGGT+TGG - contig383end:14893-14912 MsG0080048638.01.T02:intron 45.0%
GGGGGCAATTTAAAAACCCT+GGG + contig383end:15293-15312 None:intergenic 45.0%
GGTCAAGAACAATTCTGCTG+TGG - contig383end:17325-17344 MsG0080048638.01.T01:intron 45.0%
GGTCCAGAACAATTCTGATG+TGG - contig383end:18091-18110 MsG0080048638.01.T01:intron 45.0%
GTGGACACTGAAATGATTCG+TGG - contig383end:18543-18562 MsG0080048638.01.T01:intron 45.0%
TCGCAATGCCATCTGATGAA+CGG + contig383end:16420-16439 None:intergenic 45.0%
TCTTCTCATGCTGCTAGTCA+AGG - contig383end:14693-14712 MsG0080048638.01.T02:intron 45.0%
TGGGCAGTTGAGTAACCTTA+TGG - contig383end:13001-13020 MsG0080048638.01.T02:intron 45.0%
TGGGGGCAATTTAAAAACCC+TGG + contig383end:15294-15313 None:intergenic 45.0%
TGGTCAGCATCCACATCTAA+AGG - contig383end:18563-18582 MsG0080048638.01.T01:intron 45.0%
TGTTCCAGGCCTTTAGTACT+AGG + contig383end:17586-17605 None:intergenic 45.0%
TTCGGCAGTTAACTACCGAA+GGG - contig383end:14477-14496 MsG0080048638.01.T02:intron 45.0%
TTCGGCAGTTAACTACCGAA+GGG + contig383end:14496-14477 None:intergenic 45.0%
TTGATCAGTGTTGCCCATAG+TGG - contig383end:16706-16725 MsG0080048638.01.T01:intron 45.0%
TTTGTGGGTAATGTGTGGGT+TGG - contig383end:12954-12973 MsG0080048638.01.T02:intron 45.0%
! CTATTTTCCGCGATCCACTA+TGG + contig383end:16723-16742 None:intergenic 45.0%
! CTGCAGCCGGTTTCATAATT+CGG - contig383end:14459-14478 MsG0080048638.01.T02:intron 45.0%
! GCTAAGTCGATCCTTTTCTC+TGG - contig383end:18880-18899 MsG0080048638.01.T01:intron 45.0%
! GGAATTTGGTGGCTGTTCAT+TGG - contig383end:12981-13000 MsG0080048638.01.T02:intron 45.0%
! GGATCGACTTAGCACTACTA+CGG + contig383end:18873-18892 None:intergenic 45.0%
! GGCCATAAACCTTTTTACGC+TGG + contig383end:17711-17730 None:intergenic 45.0%
! TCAGTTGCTTTGACTGAGAG+GGG - contig383end:17289-17308 MsG0080048638.01.T01:intron 45.0%
!! AATTTTGGCCCCCCATGTTT+AGG + contig383end:16141-16160 None:intergenic 45.0%
!! ATTTTGGCCCCCCATGTTTA+GGG + contig383end:16140-16159 None:intergenic 45.0%
!! GCATGCAGAAGTATCTCTTC+CGG + contig383end:18722-18741 None:intergenic 45.0%
!! TGCTCGCCTGTTTTGAATAG+GGG - contig383end:18434-18453 MsG0080048638.01.T01:intron 45.0%
!! TGTGGGTTGGAGAAGGAATT+TGG - contig383end:12967-12986 MsG0080048638.01.T02:intron 45.0%
!! TGTTTCTGGCGTGTCATCTT+TGG - contig383end:12832-12851 MsG0080048638.01.T02:CDS 45.0%
!! TAAAGAATTAAATTTAATTA+AGG - contig383end:14295-14314 MsG0080048638.01.T02:intron 5.0%
!! TAAAGAATTAAATTTAATTA+AGG + contig383end:14314-14295 None:intergenic 5.0%
!!! TTAATTCTTTAATTATTTTA+TGG - contig383end:13720-13739 MsG0080048638.01.T02:intron 5.0%
AACAACCGCCGTTCATCAGA+TGG - contig383end:16409-16428 MsG0080048638.01.T01:intron 50.0%
AACCACAACGCTCTTTCTGC+TGG - contig383end:17547-17566 MsG0080048638.01.T01:intron 50.0%
AACCAGGCTAAGGAATGCAC+TGG - contig383end:18742-18761 MsG0080048638.01.T01:intron 50.0%
ACATGAAGTCACGGCCAATC+AGG + contig383end:18254-18273 None:intergenic 50.0%
ACCAGGCTAAGGAATGCACT+GGG - contig383end:18743-18762 MsG0080048638.01.T01:intron 50.0%
ACCTGAAGTCACAGCCAATC+AGG + contig383end:17460-17479 None:intergenic 50.0%
ACTTCGGCAGTTAACTGCTG+AGG + contig383end:14423-14442 None:intergenic 50.0%
AGATGGCATTGCGAGGAGTT+TGG - contig383end:16426-16445 MsG0080048638.01.T01:intron 50.0%
AGCTTCCAAAACAGTGGCAG+AGG + contig383end:15034-15053 None:intergenic 50.0%
ATCTGATGAACGGCGGTTGT+TGG + contig383end:16410-16429 None:intergenic 50.0%
CAATGCCATCTGATGAACGG+CGG + contig383end:16417-16436 None:intergenic 50.0%
CACACACCACTCGGTCATTA+TGG + contig383end:18685-18704 None:intergenic 50.0%
CAGTGTCCACCTCTAACTGA+GGG + contig383end:18533-18552 None:intergenic 50.0%
CCCTTAACGAGCCAACTTGA+CGG - contig383end:15693-15712 MsG0080048638.01.T01:intron 50.0%
CGACATTGACACGTTGACAC+CGG - contig383end:17050-17069 MsG0080048638.01.T01:intron 50.0%
CTCGTTATCAAATCGACCCC+TGG + contig383end:15474-15493 None:intergenic 50.0%
GCATTTGCCAGCGTTTAAGG+AGG - contig383end:18503-18522 MsG0080048638.01.T01:intron 50.0%
GGCGACACGTGTCCAAAAAA+AGG - contig383end:16012-16031 MsG0080048638.01.T01:intron 50.0%
GGGTTGGAGAAGGAATTTGG+TGG - contig383end:12970-12989 MsG0080048638.01.T02:intron 50.0%
GTCGCATTTGCCAGCGTTTA+AGG - contig383end:18500-18519 MsG0080048638.01.T01:intron 50.0%
GTTAGCTATAGCGATTGGGG+TGG - contig383end:16467-16486 MsG0080048638.01.T01:CDS 50.0%
GTTCATCAGATGGCATTGCG+AGG - contig383end:16419-16438 MsG0080048638.01.T01:intron 50.0%
TCAGTGTCCACCTCTAACTG+AGG + contig383end:18534-18553 None:intergenic 50.0%
TCCATGTACCTTGCACGCTA+GGG + contig383end:18811-18830 None:intergenic 50.0%
TCGGCAGTTAACTACCGAAG+GGG - contig383end:14478-14497 MsG0080048638.01.T02:intron 50.0%
TCGGCAGTTAACTACCGAAG+GGG + contig383end:14497-14478 None:intergenic 50.0%
TTCTGCATGCAACCAGGCTA+AGG - contig383end:18732-18751 MsG0080048638.01.T01:intron 50.0%
TTTGATCCTCATGGTGCGGT+AGG + contig383end:14864-14883 None:intergenic 50.0%
! AGAGCTGCTTTATCTCACCC+AGG - contig383end:15273-15292 MsG0080048638.01.T01:intron 50.0%
! CGGTGTCAACGTGTCAATGT+CGG + contig383end:17052-17071 None:intergenic 50.0%
! CTACTCCTCTGCCACTGTTT+TGG - contig383end:15026-15045 MsG0080048638.01.T02:intron 50.0%
! CTGCACCGATGTTCTTACAG+TGG - contig383end:12868-12887 MsG0080048638.01.T02:CDS 50.0%
! GAGCTGCTTTATCTCACCCA+GGG - contig383end:15274-15293 MsG0080048638.01.T01:intron 50.0%
! GGGTCCATTCAGGTTTCAAG+TGG + contig383end:18029-18048 None:intergenic 50.0%
! TGTTGTTTGGCGCTATTGCC+AGG - contig383end:18946-18965 MsG0080048638.01.T01:CDS 50.0%
!! AACCAGCAGAAAGAGCGTTG+TGG + contig383end:17552-17571 None:intergenic 50.0%
!! CCGTCAAGTTGGCTCGTTAA+GGG + contig383end:15696-15715 None:intergenic 50.0%
!! GAGAGGGGCGTTGAAAGAAT+TGG - contig383end:17304-17323 MsG0080048638.01.T01:intron 50.0%
!! GGTAATGTGTGGGTTGGAGA+AGG - contig383end:12960-12979 MsG0080048638.01.T02:intron 50.0%
!! GTGGAAGTAGCAGAGGCATT+AGG - contig383end:16486-16505 MsG0080048638.01.T01:CDS 50.0%
!! TCCGTCAAGTTGGCTCGTTA+AGG + contig383end:15697-15716 None:intergenic 50.0%
ACCAAACACCCTAGCGTGCA+AGG - contig383end:18800-18819 MsG0080048638.01.T01:intron 55.0%
ACCCTAGCGTGCAAGGTACA+TGG - contig383end:18807-18826 MsG0080048638.01.T01:intron 55.0%
ACTTCGGCAGTTAACTGCCG+AGG + contig383end:14390-14409 None:intergenic 55.0%
CAAGAACCTACCGCACCATG+AGG - contig383end:14855-14874 MsG0080048638.01.T02:intron 55.0%
CCTCGGTAGTTAACTGCAGC+CGG - contig383end:14446-14465 MsG0080048638.01.T02:intron 55.0%
CCTCGGTAGTTAACTGCAGC+CGG + contig383end:14465-14446 None:intergenic 55.0%
GATGAACGGCGGTTGTTGGA+CGG + contig383end:16406-16425 None:intergenic 55.0%
GATTGGGGTGGAAGTAGCAG+AGG - contig383end:16479-16498 MsG0080048638.01.T01:CDS 55.0%
GGCTAAGGAATGCACTGGGA+AGG - contig383end:18747-18766 MsG0080048638.01.T01:intron 55.0%
GTCACGGCCAATCAGGCAAA+AGG + contig383end:18247-18266 None:intergenic 55.0%
GTCCATGTACCTTGCACGCT+AGG + contig383end:18812-18831 None:intergenic 55.0%
TCCCAGTGCATTCCTTAGCC+TGG + contig383end:18747-18766 None:intergenic 55.0%
! ACCTTGCACGCTAGGGTGTT+TGG + contig383end:18804-18823 None:intergenic 55.0%
! CAGGTTTGAGGTTTCCTCGG+CGG + contig383end:14392-14373 None:intergenic 55.0%
! GCACCGGCACTTCTGATCAA+AGG + contig383end:17120-17139 None:intergenic 55.0%
! GCCTGATTGGCTGTGACTTC+AGG - contig383end:17456-17475 MsG0080048638.01.T01:intron 55.0%
!! GTGTTGCCCATAGTGGATCG+CGG - contig383end:16713-16732 MsG0080048638.01.T01:intron 55.0%
ACTTCGGCAGTTAACCGCCG+AGG - contig383end:13621-13640 MsG0080048638.01.T02:intron 60.0%
CCGGCTGCAGTTAACTACCG+AGG - contig383end:13562-13581 MsG0080048638.01.T02:intron 60.0%
CCGGCTGCAGTTAACTACCG+AGG + contig383end:13581-13562 None:intergenic 60.0%
GGAGGCGAACCCTCAGTTAG+AGG - contig383end:18521-18540 MsG0080048638.01.T01:intron 60.0%
GGCGAACCCTCAGTTAGAGG+TGG - contig383end:18524-18543 MsG0080048638.01.T01:intron 60.0%
GGGTTCGCCTCCTTAAACGC+TGG + contig383end:18513-18532 None:intergenic 60.0%
GTTGGACGGCTGACGGTGAT+CGG + contig383end:16392-16411 None:intergenic 60.0%
TCTTCTCGGTAGGACCCGTG+CGG - contig383end:13370-13389 MsG0080048638.01.T02:intron 60.0%
TCTTGACCCGTGCTACCGCA+CGG + contig383end:13388-13407 None:intergenic 60.0%
CGGCTGACGGTGATCGGAGA+CGG + contig383end:16386-16405 None:intergenic 65.0%
CTGACGGTGATCGGAGACGG+AGG + contig383end:16383-16402 None:intergenic 65.0%
CTTGACCCGTGCTACCGCAC+GGG + contig383end:13387-13406 None:intergenic 65.0%
GGAGGCTCTGTGCGGCGTTA+GGG + contig383end:16365-16384 None:intergenic 65.0%
GGCGGTTGTTGGACGGCTGA+CGG + contig383end:16399-16418 None:intergenic 65.0%
GTAGGACCCGTGCGGTAGCA+CGG - contig383end:13378-13397 MsG0080048638.01.T02:intron 65.0%
TAGGACCCGTGCGGTAGCAC+GGG - contig383end:13379-13398 MsG0080048638.01.T02:intron 65.0%
TCGGAGACGGAGGCTCTGTG+CGG + contig383end:16373-16392 None:intergenic 65.0%
CGGAGGCTCTGTGCGGCGTT+AGG + contig383end:16366-16385 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
contig383end gene 12538 19108 12538 ID=MsG0080048638.01;Name=MsG0080048638.01
contig383end mRNA 15135 19108 15135 ID=MsG0080048638.01.T01;Parent=MsG0080048638.01;Name=MsG0080048638.01.T01;_AED=0.60;_eAED=0.76;_QI=0|0|0|0.5|0.33|0.25|4|132|112
contig383end exon 19084 19108 19084 ID=MsG0080048638.01.T01:exon:5609;Parent=MsG0080048638.01.T01
contig383end exon 18920 19025 18920 ID=MsG0080048638.01.T01:exon:5610;Parent=MsG0080048638.01.T01
contig383end exon 16457 16662 16457 ID=MsG0080048638.01.T01:exon:5611;Parent=MsG0080048638.01.T01
contig383end exon 15135 15268 15135 ID=MsG0080048638.01.T01:exon:5612;Parent=MsG0080048638.01.T01
contig383end CDS 19084 19108 19084 ID=MsG0080048638.01.T01:cds;Parent=MsG0080048638.01.T01
contig383end CDS 18920 19025 18920 ID=MsG0080048638.01.T01:cds;Parent=MsG0080048638.01.T01
contig383end CDS 16457 16662 16457 ID=MsG0080048638.01.T01:cds;Parent=MsG0080048638.01.T01
contig383end CDS 15267 15268 15267 ID=MsG0080048638.01.T01:cds;Parent=MsG0080048638.01.T01
contig383end three_prime_UTR 15135 15266 15135 ID=MsG0080048638.01.T01:three_prime_utr;Parent=MsG0080048638.01.T01
contig383end mRNA 12538 15370 12538 ID=MsG0080048638.01.T02;Parent=MsG0080048638.01;Name=MsG0080048638.01.T02;_AED=0.41;_eAED=0.41;_QI=152|1|1|1|0.5|0.66|3|258|119
contig383end exon 15139 15370 15139 ID=MsG0080048638.01.T02:exon:5613;Parent=MsG0080048638.01.T02
contig383end exon 13052 13158 13052 ID=MsG0080048638.01.T02:exon:5614;Parent=MsG0080048638.01.T02
contig383end exon 12538 12968 12538 ID=MsG0080048638.01.T02:exon:5615;Parent=MsG0080048638.01.T02
contig383end five_prime_UTR 15219 15370 15219 ID=MsG0080048638.01.T02:five_prime_utr;Parent=MsG0080048638.01.T02
contig383end CDS 15139 15218 15139 ID=MsG0080048638.01.T02:cds;Parent=MsG0080048638.01.T02
contig383end CDS 13052 13158 13052 ID=MsG0080048638.01.T02:cds;Parent=MsG0080048638.01.T02
contig383end CDS 12796 12968 12796 ID=MsG0080048638.01.T02:cds;Parent=MsG0080048638.01.T02
contig383end three_prime_UTR 12538 12795 12538 ID=MsG0080048638.01.T02:three_prime_utr;Parent=MsG0080048638.01.T02
Gene Sequence

>MsG0080048638.01.T02

ATGGCATTGCGAGGAGTTTGGCAACTGAAGAAGCTCGTTGTTAGCTATAGCGATTGGGGTGGAAGTAGCAGAGGCATTAGGGCATTTATGGAGTCGCATTTGCCAGCGTTTAAGGAGGCGAACCCTCAGTTAGAGGTGGACACTGAAATGATTCGTGGTCAGCATCCACATCTAAAGGCCTTTTACAAGAACCATAATGACCGAGTGGTGTGTGTGAAGAATATGGATCCGGAAGAGATACTTCTGCATGCAACCAGGCTAAGGAATGCACTGGGAAGGAAAGTAATTAAGCTGAGGACAAGACATGTAACCAAACACCCTAGCGTGCAAGGTACATGGACAACTGCTTTGAAATATTAG

>MsG0080048638.01.T01

ATGTATGGTGTAGGAAGAAGTTTTGTCTGGCTTAGACTTTGTTCGGCTATTATTGAGGAAATTGGATTTAGGTTTGGTATCTATGAAGAGGAAGCTTTATGTAATTTTGTTATGGGATTTCCAGTATTTGCAAACTCCACAAGCAATTTTCTACTTGGTAAGTCAAATTTCAACTACTCCTCTGCCACTGTTTTGGAAGCTGAAGCTATTGGTCTTTTGGAATCCATCAAAATGGCAATATCAAAAGCTTTTCACTGTGTGGACAACAAGATTCTGGTTGACTTACTAAAATCCACCAATCCTCCAACTAATGAAATTGGTGATTTAGTTCCCGAATAG
Protein sequence

>MsG0080048638.01.T02

MALRGVWQLKKLVVSYSDWGGSSRGIRAFMESHLPAFKEANPQLEVDTEMIRGQHPHLKAFYKNHNDRVVCVKNMDPEEILLHATRLRNALGRKVIKLRTRHVTKHPSVQGTWTTALKY*

>MsG0080048638.01.T01

MYGVGRSFVWLRLCSAIIEEIGFRFGIYEEEALCNFVMGFPVFANSTSNFLLGKSNFNYSSATVLEAEAIGLLESIKMAISKAFHCVDNKILVDLLKSTNPPTNEIGDLVPE*