AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004481.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004481.01.T01 MTR_1g080770 98.551 69 1 0 1 69 1 69 7.12e-45 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004481.01.T01 AT1G08780 70.130 77 20 1 1 74 1 77 3.56e-30 103

Find 43 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCAATGTTTCTAACTTTC+CGG 0.166301 1:-78682592 MsG0180004481.01.T01:three_prime_UTR
TAACTTATTTATAGATTTCT+AGG 0.180155 1:-78682715 MsG0180004481.01.T01:three_prime_UTR
AAAATTCTGTATGGGAAGTT+TGG 0.251421 1:-78682766 MsG0180004481.01.T01:three_prime_UTR
ACAGGAATCAAATGATAATT+TGG 0.284647 1:-78682979 MsG0180004481.01.T01:intron
AGAAGCGACAAGCCAGAAAT+TGG 0.310931 1:-78682842 MsG0180004481.01.T01:three_prime_UTR
AGGTCGTTCGGTTTCAAATA+GGG 0.342219 1:-78682920 MsG0180004481.01.T01:CDS
GAGGTCGTTCGGTTTCAAAT+AGG 0.358066 1:-78682921 MsG0180004481.01.T01:CDS
GTTGATTCAAATTCGATGTA+TGG 0.367701 1:+78685912 None:intergenic
CTCCCAGGTAACTTCCGTTT+CGG 0.367751 1:+78685786 None:intergenic
CGAATTTGTTGATGTTCTGC+TGG 0.380247 1:+78685761 None:intergenic
AGATTGTGTCTCTTAATTGT+AGG 0.390561 1:-78682643 MsG0180004481.01.T01:three_prime_UTR
GATCCGAAACGGAAGTTACC+TGG 0.424382 1:-78685789 MsG0180004481.01.T01:CDS
CAGCAGAACATCAACAAATT+CGG 0.438286 1:-78685760 MsG0180004481.01.T01:CDS
GAACTGAAGAAAATTCTGTA+TGG 0.443165 1:-78682775 MsG0180004481.01.T01:three_prime_UTR
TACAATTAAGAGACACAATC+TGG 0.461620 1:+78682645 None:intergenic
CTGCTCTCTACTTCATCCTT+AGG 0.477281 1:+78682880 None:intergenic
TCACAGATGAAGAGGTCGTT+CGG 0.479003 1:-78682932 MsG0180004481.01.T01:CDS
TTGAATCAACAAGATGCAAC+AGG 0.487875 1:-78685899 MsG0180004481.01.T01:intron
GATGTTCTGCTGGTCCTCCC+AGG 0.504132 1:+78685771 None:intergenic
AGGTATTGCTCATGTGCCTA+AGG 0.530989 1:-78682896 MsG0180004481.01.T01:CDS
AACTGAAGAAAATTCTGTAT+GGG 0.540625 1:-78682774 MsG0180004481.01.T01:three_prime_UTR
TTGTGATGCGTAAAGGGAGG+AGG 0.548135 1:-78685811 MsG0180004481.01.T01:intron
GGTCGTTCGGTTTCAAATAG+GGG 0.554503 1:-78682919 MsG0180004481.01.T01:CDS
GGAATCAAATGATAATTTGG+AGG 0.556672 1:-78682976 MsG0180004481.01.T01:CDS
AGCCGGAAAGTTAGAAACAT+TGG 0.556790 1:+78682590 None:intergenic
TGGAGAATCTATCAATCTTG+AGG 0.571653 1:-78682746 MsG0180004481.01.T01:three_prime_UTR
CTAAGGATGAAGTAGAGAGC+AGG 0.573213 1:-78682879 MsG0180004481.01.T01:exon
GTTAATTCTCACAGATGAAG+AGG 0.578655 1:-78682940 MsG0180004481.01.T01:CDS
AAATCAGTCAAAGTACTATG+AGG 0.580948 1:+78682671 None:intergenic
ATCTCACAGAATGAACAAGC+CGG 0.592616 1:+78682573 None:intergenic
TGATGAGATCAAAATCGCTA+AGG 0.599557 1:-78685707 MsG0180004481.01.T01:intron
CCAGAAATTGGAAAAGCTTG+AGG 0.599943 1:-78682830 MsG0180004481.01.T01:three_prime_UTR
ATCCGAAACGGAAGTTACCT+GGG 0.600013 1:-78685788 MsG0180004481.01.T01:CDS
CATTGGCAAACAGTGAAATG+AGG 0.613129 1:+78682607 None:intergenic
GGTTCTGGTCAAGCTTGCAG+TGG 0.615906 1:-78685958 MsG0180004482.01.T01:CDS
CGTTCGGTTTCAAATAGGGG+AGG 0.636159 1:-78682916 MsG0180004481.01.T01:CDS
AGAATCTATCAATCTTGAGG+AGG 0.639907 1:-78682743 MsG0180004481.01.T01:three_prime_UTR
AAAGGGAGGAGGATCCGAAA+CGG 0.642912 1:-78685800 MsG0180004481.01.T01:intron
AGAACATCAACAAATTCGGA+AGG 0.648692 1:-78685756 MsG0180004481.01.T01:CDS
TTCAGACATCTGAGCAACCA+CGG 0.661375 1:+78682795 None:intergenic
GAAATTGGAAAAGCTTGAGG+AGG 0.664223 1:-78682827 MsG0180004481.01.T01:three_prime_UTR
TGAGGAGGAGAAACAATCCG+TGG 0.717310 1:-78682812 MsG0180004481.01.T01:three_prime_UTR
CGAAACGGAAGTTACCTGGG+AGG 0.771650 1:-78685785 MsG0180004481.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAATTAAAAAATAT+AGG - Chr1:78684691-78684710 MsG0180004481.01.T01:intron 0.0%
!! TTATTAAAATATGGTATAAA+CGG - Chr1:78684811-78684830 MsG0180004481.01.T01:intron 10.0%
!!! TTAATAACTTTTTTCAATTA+AGG + Chr1:78683176-78683195 None:intergenic 10.0%
!! AAAAAAAATATATCAGCAAT+AGG - Chr1:78684380-78684399 MsG0180004481.01.T01:intron 15.0%
!! AAAAAAATATATCAGCAATA+GGG - Chr1:78684381-78684400 MsG0180004481.01.T01:intron 15.0%
!! AAAAACAAAAATACAAAATC+TGG - Chr1:78683518-78683537 MsG0180004481.01.T01:intron 15.0%
!! AAATAATATTTAGTTGTTTG+AGG - Chr1:78685381-78685400 MsG0180004481.01.T01:intron 15.0%
!! AACATCAAAATATAAAACAA+TGG + Chr1:78685477-78685496 None:intergenic 15.0%
!! AATCTCAAAAATTCAATTTA+GGG + Chr1:78682636-78682655 None:intergenic 15.0%
!! AATTATGGCTTATTAAAATA+TGG - Chr1:78684802-78684821 MsG0180004481.01.T01:intron 15.0%
!! ATATATATAATTCTTGTGAA+TGG + Chr1:78684242-78684261 None:intergenic 15.0%
!! TAACTTATTTATAGATTTCT+AGG - Chr1:78685784-78685803 MsG0180004481.01.T01:CDS 15.0%
!!! ATTTTAAAGGAAAACAAAAA+TGG - Chr1:78683382-78683401 MsG0180004481.01.T01:intron 15.0%
!!! GTAAATTATTTTGAGAAATA+TGG - Chr1:78684497-78684516 MsG0180004481.01.T01:intron 15.0%
!!! TATACATGTCTTTTTTTTTA+AGG + Chr1:78684668-78684687 None:intergenic 15.0%
!!! TTTTCAATTTATTTCCATAA+AGG - Chr1:78683901-78683920 MsG0180004481.01.T01:intron 15.0%
!! AACAACTATAAAAATTTACC+TGG - Chr1:78684443-78684462 MsG0180004481.01.T01:intron 20.0%
!! CAATCTCAAAAATTCAATTT+AGG + Chr1:78682637-78682656 None:intergenic 20.0%
!! CTCAAATAATGATAATTATC+TGG + Chr1:78683805-78683824 None:intergenic 20.0%
!! TACAACCAAATTTATTAGAA+AGG + Chr1:78684361-78684380 None:intergenic 20.0%
!! TATGGAAATAAATTGAAAAC+AGG + Chr1:78683900-78683919 None:intergenic 20.0%
!!! ATAAGCACTTGTTATATAAA+AGG + Chr1:78685028-78685047 None:intergenic 20.0%
!!! CTCAACATACATTTTTATTT+TGG - Chr1:78683552-78683571 MsG0180004481.01.T01:intron 20.0%
!!! GAGTGTTTCATTTATTTTAA+AGG - Chr1:78683369-78683388 MsG0180004481.01.T01:intron 20.0%
!!! TATATTTTGATGTTAATGCA+TGG - Chr1:78685483-78685502 MsG0180004481.01.T01:intron 20.0%
!!! TTAATCAAATTCAAAGGTTT+TGG - Chr1:78682850-78682869 MsG0180004481.01.T01:three_prime_UTR 20.0%
!!! TTTGTTTTTTCCATTCAAAT+AGG + Chr1:78683507-78683526 None:intergenic 20.0%
! AAACTATAAGAACGATATAG+CGG + Chr1:78683774-78683793 None:intergenic 25.0%
! AACTGAAGAAAATTCTGTAT+GGG - Chr1:78685725-78685744 MsG0180004481.01.T01:CDS 25.0%
! AATTTATAAGCTCAGATATG+TGG + Chr1:78682974-78682993 None:intergenic 25.0%
! ACAATACAAATACAAATACC+AGG + Chr1:78684464-78684483 None:intergenic 25.0%
! ACAGGAATCAAATGATAATT+TGG - Chr1:78685520-78685539 MsG0180004481.01.T01:intron 25.0%
! AGGATATAAACTACTCATAT+AGG + Chr1:78682907-78682926 None:intergenic 25.0%
! CGTGTGTTAATTAAAGAATA+AGG - Chr1:78684610-78684629 MsG0180004481.01.T01:intron 25.0%
! CTATAAGCTATTTATCCAAA+CGG + Chr1:78683929-78683948 None:intergenic 25.0%
! GGATATAAACTACTCATATA+GGG + Chr1:78682906-78682925 None:intergenic 25.0%
! GTAGTGTTTGATAAAATTAG+CGG + Chr1:78683213-78683232 None:intergenic 25.0%
! TAAAGGAAAACAAAAATGGT+TGG - Chr1:78683386-78683405 MsG0180004481.01.T01:intron 25.0%
! TAAAGTTGTTTATCCAAACA+AGG - Chr1:78685063-78685082 MsG0180004481.01.T01:intron 25.0%
! TATAAGCTATTTATCCAAAC+GGG + Chr1:78683928-78683947 None:intergenic 25.0%
! TCTCACCTTTCTAATAAATT+TGG - Chr1:78684353-78684372 MsG0180004481.01.T01:intron 25.0%
! TTTGCGTTAATCAAATTCAA+AGG - Chr1:78682844-78682863 MsG0180004481.01.T01:three_prime_UTR 25.0%
!! AAGAATAAGGTATTCTAGTT+AGG - Chr1:78684623-78684642 MsG0180004481.01.T01:intron 25.0%
!! CTTACATAATTTGAAGTGTT+TGG - Chr1:78684046-78684065 MsG0180004481.01.T01:intron 25.0%
!! TATCGTTCTTATAGTTTTTG+AGG - Chr1:78683777-78683796 MsG0180004481.01.T01:intron 25.0%
!!! AAAGGTTTTGGAATAGAAAT+GGG - Chr1:78682862-78682881 MsG0180004481.01.T01:three_prime_UTR 25.0%
!!! ATATAGGCTTTGAAGAAAAA+AGG - Chr1:78684707-78684726 MsG0180004481.01.T01:intron 25.0%
!!! GATTTCTAGGTTACTTTTTA+TGG - Chr1:78685797-78685816 MsG0180004481.01.T01:CDS 25.0%
!!! TTTGTTTTCATAAGCTATCA+TGG + Chr1:78684957-78684976 None:intergenic 25.0%
!!! TTTTTCAATTAAGGCTACAA+TGG + Chr1:78683167-78683186 None:intergenic 25.0%
AAAATTCTGTATGGGAAGTT+TGG - Chr1:78685733-78685752 MsG0180004481.01.T01:CDS 30.0%
AGAAAGTAGCTTATAGCTTA+AGG + Chr1:78683021-78683040 None:intergenic 30.0%
AGATTGTGTCTCTTAATTGT+AGG - Chr1:78685856-78685875 MsG0180004481.01.T01:intron 30.0%
ATAAGCTATTTATCCAAACG+GGG + Chr1:78683927-78683946 None:intergenic 30.0%
ATCCTCGAAAATCAATTATG+TGG - Chr1:78685240-78685259 MsG0180004481.01.T01:intron 30.0%
ATGTGGTAAGCTCAAAATTA+TGG - Chr1:78684787-78684806 MsG0180004481.01.T01:intron 30.0%
ATTCAAATAGGAAACCTTCT+CGG + Chr1:78683495-78683514 None:intergenic 30.0%
ATTTGTTTGTGATGCGTAAA+GGG - Chr1:78682682-78682701 MsG0180004481.01.T01:three_prime_UTR 30.0%
CATTATTTGAGCTTAACTAC+TGG - Chr1:78683814-78683833 MsG0180004481.01.T01:intron 30.0%
CTCGATAAGCTATTTATGTT+TGG - Chr1:78684004-78684023 MsG0180004481.01.T01:intron 30.0%
GAACTGAAGAAAATTCTGTA+TGG - Chr1:78685724-78685743 MsG0180004481.01.T01:CDS 30.0%
GGAATCAAATGATAATTTGG+AGG - Chr1:78685523-78685542 MsG0180004481.01.T01:intron 30.0%
GGATTCATATTGTATGATTC+TGG + Chr1:78683474-78683493 None:intergenic 30.0%
TACAATTAAGAGACACAATC+TGG + Chr1:78685857-78685876 None:intergenic 30.0%
TCAAAATAAGCCAATCCAAA+CGG - Chr1:78684920-78684939 MsG0180004481.01.T01:intron 30.0%
TCGGAAGAAAAAGAAATTAG+CGG - Chr1:78683739-78683758 MsG0180004481.01.T01:intron 30.0%
TGATGTATACATGTATGTGT+GGG + Chr1:78683330-78683349 None:intergenic 30.0%
! AAATCAGTCAAAGTACTATG+AGG + Chr1:78685831-78685850 None:intergenic 30.0%
! GTTGATTCAAATTCGATGTA+TGG + Chr1:78682590-78682609 None:intergenic 30.0%
!! AACCACATAATTGATTTTCG+AGG + Chr1:78685245-78685264 None:intergenic 30.0%
!! ATAGGGATTCTCTTTGATTT+TGG + Chr1:78682889-78682908 None:intergenic 30.0%
!! TTATTAGAGAAAGCGTTCAT+CGG - Chr1:78683720-78683739 MsG0180004481.01.T01:intron 30.0%
!! TTTATTTTCTGCTTGAGTCA+AGG + Chr1:78685096-78685115 None:intergenic 30.0%
!! TTTTTACAGCTTTTTAGTCG+TGG + Chr1:78684138-78684157 None:intergenic 30.0%
!!! CAAAGGTTTTGGAATAGAAA+TGG - Chr1:78682861-78682880 MsG0180004481.01.T01:three_prime_UTR 30.0%
AAAATAAGCCAATCCAAACG+GGG - Chr1:78684922-78684941 MsG0180004481.01.T01:intron 35.0%
AAATAGCGAATCGCTGATAA+CGG + Chr1:78683261-78683280 None:intergenic 35.0%
AAGTAGCTTATAGCTTAAGG+TGG + Chr1:78683018-78683037 None:intergenic 35.0%
ACTCTGTCTTTGTTCATATG+AGG + Chr1:78683353-78683372 None:intergenic 35.0%
AGAACATCAACAAATTCGGA+AGG - Chr1:78682743-78682762 MsG0180004481.01.T01:three_prime_UTR 35.0%
AGAATCTATCAATCTTGAGG+AGG - Chr1:78685756-78685775 MsG0180004481.01.T01:CDS 35.0%
AGGGGGTCATATATATATAC+TGG - Chr1:78684745-78684764 MsG0180004481.01.T01:intron 35.0%
ATAAGCTATCATGGAGAGTT+TGG + Chr1:78684948-78684967 None:intergenic 35.0%
ATTGCAAAATGCTTAGAAGG+AGG + Chr1:78685447-78685466 None:intergenic 35.0%
CAAAATAAGCCAATCCAAAC+GGG - Chr1:78684921-78684940 MsG0180004481.01.T01:intron 35.0%
CAGCAGAACATCAACAAATT+CGG - Chr1:78682739-78682758 MsG0180004481.01.T01:three_prime_UTR 35.0%
CATACAATATGAATCCGAGA+AGG - Chr1:78683478-78683497 MsG0180004481.01.T01:intron 35.0%
CATTTGTTTGTGATGCGTAA+AGG - Chr1:78682681-78682700 MsG0180004481.01.T01:three_prime_UTR 35.0%
GAGAAGGTTTCCTATTTGAA+TGG - Chr1:78683494-78683513 MsG0180004481.01.T01:intron 35.0%
GTCATTGCAAAATGCTTAGA+AGG + Chr1:78685450-78685469 None:intergenic 35.0%
GTGATGTATACATGTATGTG+TGG + Chr1:78683331-78683350 None:intergenic 35.0%
GTGGGAATAAGAATTGTTTG+TGG + Chr1:78683312-78683331 None:intergenic 35.0%
GTTAATTCTCACAGATGAAG+AGG - Chr1:78685559-78685578 MsG0180004481.01.T01:intron 35.0%
TGATGAGATCAAAATCGCTA+AGG - Chr1:78682792-78682811 MsG0180004481.01.T01:three_prime_UTR 35.0%
TGGAGAATCTATCAATCTTG+AGG - Chr1:78685753-78685772 MsG0180004481.01.T01:CDS 35.0%
TGTGATGTCTTTCAACTTCT+CGG - Chr1:78685351-78685370 MsG0180004481.01.T01:intron 35.0%
TTACCCAAACGCATTTGAAA+AGG - Chr1:78684866-78684885 MsG0180004481.01.T01:intron 35.0%
TTGAATCAACAAGATGCAAC+AGG - Chr1:78682600-78682619 MsG0180004481.01.T01:three_prime_UTR 35.0%
TTGAGATAGTGCTATCTGTT+TGG - Chr1:78682944-78682963 MsG0180004481.01.T01:CDS 35.0%
TTGATCAGTTCTATAGTGCT+AGG + Chr1:78683600-78683619 None:intergenic 35.0%
TTGCAAAATGCTTAGAAGGA+GGG + Chr1:78685446-78685465 None:intergenic 35.0%
! AAGCCTTTTCAAATGCGTTT+GGG + Chr1:78684872-78684891 None:intergenic 35.0%
! CAACAAAAAGCATGTAGCAA+AGG + Chr1:78682927-78682946 None:intergenic 35.0%
! TAAGCCTTTTCAAATGCGTT+TGG + Chr1:78684873-78684892 None:intergenic 35.0%
! TGCCAATGTTTCTAACTTTC+CGG - Chr1:78685907-78685926 MsG0180004481.01.T01:exon 35.0%
!! ATGGAGATTTTGTTTGTCAC+AGG - Chr1:78685502-78685521 MsG0180004481.01.T01:intron 35.0%
!! TTCTGGTTCCTATTTCCTAT+CGG + Chr1:78683457-78683476 None:intergenic 35.0%
ACACGACACACATGAGAAAA+GGG + Chr1:78685278-78685297 None:intergenic 40.0%
AGAAACTGTACGTCTCTGTT+TGG + Chr1:78683288-78683307 None:intergenic 40.0%
AGCCGGAAAGTTAGAAACAT+TGG + Chr1:78685912-78685931 None:intergenic 40.0%
AGCTTACCACATAGCTTATG+CGG + Chr1:78684779-78684798 None:intergenic 40.0%
AGGTCGTTCGGTTTCAAATA+GGG - Chr1:78685579-78685598 MsG0180004481.01.T01:intron 40.0%
ATCTCACAGAATGAACAAGC+CGG + Chr1:78685929-78685948 None:intergenic 40.0%
ATTTCCTATCGGGATGATTC+TGG + Chr1:78683446-78683465 None:intergenic 40.0%
CATTGGCAAACAGTGAAATG+AGG + Chr1:78685895-78685914 None:intergenic 40.0%
CCAGAAATTGGAAAAGCTTG+AGG - Chr1:78685669-78685688 MsG0180004481.01.T01:intron 40.0%
CTTTGCTAGGTTTGAGGAAA+AGG - Chr1:78685176-78685195 MsG0180004481.01.T01:intron 40.0%
GAAATTGGAAAAGCTTGAGG+AGG - Chr1:78685672-78685691 MsG0180004481.01.T01:intron 40.0%
GAATCATCCCGATAGGAAAT+AGG - Chr1:78683446-78683465 MsG0180004481.01.T01:intron 40.0%
TAATCTCCGCATAAGCTATG+TGG - Chr1:78684770-78684789 MsG0180004481.01.T01:intron 40.0%
TGCAAAATGCTTAGAAGGAG+GGG + Chr1:78685445-78685464 None:intergenic 40.0%
TGCTAGGAGTTCAAAGTAAG+AGG + Chr1:78683584-78683603 None:intergenic 40.0%
TGTCTTTCAACTTCTCGGTT+TGG - Chr1:78685356-78685375 MsG0180004481.01.T01:intron 40.0%
TTTGAGGAAAAGGATGAGAG+TGG - Chr1:78685186-78685205 MsG0180004481.01.T01:intron 40.0%
! CCTCAAGCTTTTCCAATTTC+TGG + Chr1:78685672-78685691 None:intergenic 40.0%
! TCTGGTTCCTATTTCCTATC+GGG + Chr1:78683456-78683475 None:intergenic 40.0%
!! AAAGGTAAAGCGAGTATCGA+AGG - Chr1:78684725-78684744 MsG0180004481.01.T01:intron 40.0%
!! AAGGTAAAGCGAGTATCGAA+GGG - Chr1:78684726-78684745 MsG0180004481.01.T01:intron 40.0%
!! CGAATTTGTTGATGTTCTGC+TGG + Chr1:78682741-78682760 None:intergenic 40.0%
AAGCGCTTGAGAGACTGTTT+GGG - Chr1:78683840-78683859 MsG0180004481.01.T01:intron 45.0%
ACAACCAGAATCATCCCGAT+AGG - Chr1:78683439-78683458 MsG0180004481.01.T01:intron 45.0%
AGAAGCGACAAGCCAGAAAT+TGG - Chr1:78685657-78685676 MsG0180004481.01.T01:intron 45.0%
ATCCGAAACGGAAGTTACCT+GGG - Chr1:78682711-78682730 MsG0180004481.01.T01:three_prime_UTR 45.0%
ATTTCCATAAAGGCCCCGTT+TGG - Chr1:78683911-78683930 MsG0180004481.01.T01:intron 45.0%
CAAACCTAGCAAAGAACTCG+AGG + Chr1:78685170-78685189 None:intergenic 45.0%
CACACGACACACATGAGAAA+AGG + Chr1:78685279-78685298 None:intergenic 45.0%
CGAGTTCTTTGCTAGGTTTG+AGG - Chr1:78685170-78685189 MsG0180004481.01.T01:intron 45.0%
CTAAGGATGAAGTAGAGAGC+AGG - Chr1:78685620-78685639 MsG0180004481.01.T01:intron 45.0%
CTGCTCTCTACTTCATCCTT+AGG + Chr1:78685622-78685641 None:intergenic 45.0%
GAGGTCGTTCGGTTTCAAAT+AGG - Chr1:78685578-78685597 MsG0180004481.01.T01:intron 45.0%
GGTCGTTCGGTTTCAAATAG+GGG - Chr1:78685580-78685599 MsG0180004481.01.T01:intron 45.0%
TAAGCGCTTGAGAGACTGTT+TGG - Chr1:78683839-78683858 MsG0180004481.01.T01:intron 45.0%
TCACAGATGAAGAGGTCGTT+CGG - Chr1:78685567-78685586 MsG0180004481.01.T01:intron 45.0%
TCCCGCAAAAGAACATGCTT+GGG - Chr1:78683689-78683708 MsG0180004481.01.T01:intron 45.0%
TGTTTGTGATGCGTAAAGGG+AGG - Chr1:78682685-78682704 MsG0180004481.01.T01:three_prime_UTR 45.0%
TTATCCAAACGGGGCCTTTA+TGG + Chr1:78683918-78683937 None:intergenic 45.0%
TTCAGACATCTGAGCAACCA+CGG + Chr1:78685707-78685726 None:intergenic 45.0%
TTCCCGCAAAAGAACATGCT+TGG - Chr1:78683688-78683707 MsG0180004481.01.T01:intron 45.0%
! AGGTATTGCTCATGTGCCTA+AGG - Chr1:78685603-78685622 MsG0180004481.01.T01:intron 45.0%
! TATCGGGATGATTCTGGTTG+TGG + Chr1:78683440-78683459 None:intergenic 45.0%
! TCAAGGAGATCTGCCTTGTT+TGG + Chr1:78685079-78685098 None:intergenic 45.0%
!! AGGTAAAGCGAGTATCGAAG+GGG - Chr1:78684727-78684746 MsG0180004481.01.T01:intron 45.0%
AAAGGGAGGAGGATCCGAAA+CGG - Chr1:78682699-78682718 MsG0180004481.01.T01:three_prime_UTR 50.0%
AAGAACATGCTTGGGGGTGA+TGG - Chr1:78683697-78683716 MsG0180004481.01.T01:intron 50.0%
AAGAACTCGAGGTAGGCAAC+AGG + Chr1:78685159-78685178 None:intergenic 50.0%
AAGACAGTACCACTGCAAGC+TGG + Chr1:78682553-78682572 None:intergenic 50.0%
CCCGCAAAAGAACATGCTTG+GGG - Chr1:78683690-78683709 MsG0180004481.01.T01:intron 50.0%
CCGCAAAAGAACATGCTTGG+GGG - Chr1:78683691-78683710 MsG0180004481.01.T01:intron 50.0%
CCTACCTCGAGTTCTTTGCT+AGG - Chr1:78685163-78685182 MsG0180004481.01.T01:intron 50.0%
CCTAGCAAAGAACTCGAGGT+AGG + Chr1:78685166-78685185 None:intergenic 50.0%
CGTTCGGTTTCAAATAGGGG+AGG - Chr1:78685583-78685602 MsG0180004481.01.T01:intron 50.0%
CTCCCAGGTAACTTCCGTTT+CGG + Chr1:78682716-78682735 None:intergenic 50.0%
GATCCGAAACGGAAGTTACC+TGG - Chr1:78682710-78682729 MsG0180004481.01.T01:three_prime_UTR 50.0%
TGAGGAGGAGAAACAATCCG+TGG - Chr1:78685687-78685706 MsG0180004481.01.T01:intron 50.0%
TTGTGATGCGTAAAGGGAGG+AGG - Chr1:78682688-78682707 MsG0180004481.01.T01:three_prime_UTR 50.0%
! CCCCAAGCATGTTCTTTTGC+GGG + Chr1:78683693-78683712 None:intergenic 50.0%
! CCCCCAAGCATGTTCTTTTG+CGG + Chr1:78683694-78683713 None:intergenic 50.0%
! GGGATGATTCTGGTTGTGGT+GGG + Chr1:78683436-78683455 None:intergenic 50.0%
!! GCGAATCGCTGATAACGGAT+AGG + Chr1:78683256-78683275 None:intergenic 50.0%
!! GGTAAAGCGAGTATCGAAGG+GGG - Chr1:78684728-78684747 MsG0180004481.01.T01:intron 50.0%
ATGGAGAGTTTGGCCCCGTT+TGG + Chr1:78684938-78684957 None:intergenic 55.0%
CGAAACGGAAGTTACCTGGG+AGG - Chr1:78682714-78682733 MsG0180004481.01.T01:three_prime_UTR 55.0%
GAGTTTGGCCCCGTTTGGAT+TGG + Chr1:78684933-78684952 None:intergenic 55.0%
GTGTGTCGTGTGTGTCTGAG+AGG - Chr1:78685287-78685306 MsG0180004481.01.T01:intron 55.0%
! CGGGATGATTCTGGTTGTGG+TGG + Chr1:78683437-78683456 None:intergenic 55.0%
GATGTTCTGCTGGTCCTCCC+AGG + Chr1:78682731-78682750 None:intergenic 60.0%
GCGGGAAGTCTAGCACATCG+AGG + Chr1:78683675-78683694 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 78682552 78685969 78682552 ID=MsG0180004481.01;Name=MsG0180004481.01
Chr1 mRNA 78682552 78685969 78682552 ID=MsG0180004481.01.T01;Parent=MsG0180004481.01;Name=MsG0180004481.01.T01;_AED=0.50;_eAED=0.50;_QI=61|1|1|1|0|0|3|335|76
Chr1 exon 78682552 78682997 78682552 ID=MsG0180004481.01.T01:exon:45473;Parent=MsG0180004481.01.T01
Chr1 exon 78685708 78685818 78685708 ID=MsG0180004481.01.T01:exon:45472;Parent=MsG0180004481.01.T01
Chr1 exon 78685900 78685969 78685900 ID=MsG0180004481.01.T01:exon:45471;Parent=MsG0180004481.01.T01
Chr1 five_prime_UTR 78685909 78685969 78685909 ID=MsG0180004481.01.T01:five_prime_utr;Parent=MsG0180004481.01.T01
Chr1 CDS 78685900 78685908 78685900 ID=MsG0180004481.01.T01:cds;Parent=MsG0180004481.01.T01
Chr1 CDS 78685708 78685818 78685708 ID=MsG0180004481.01.T01:cds;Parent=MsG0180004481.01.T01
Chr1 CDS 78682887 78682997 78682887 ID=MsG0180004481.01.T01:cds;Parent=MsG0180004481.01.T01
Chr1 three_prime_UTR 78682552 78682886 78682552 ID=MsG0180004481.01.T01:three_prime_utr;Parent=MsG0180004481.01.T01
Gene Sequence

>MsG0180004481.01.T01

ATGCAACAGGGAGGAGGATCCGAAACGGAAGTTACCTGGGAGGACCAGCAGAACATCAACAAATTCGGAAGGTTGAATAATCGCTTACACGAGCTACATGATGAGATCAAAATCGCTAAGGAATCAAATGATAATTTGGAGGATGCAAGCAATGAGTTAATTCTCACAGATGAAGAGGTCGTTCGGTTTCAAATAGGGGAGGTATTGCTCATGTGCCTAAGGATGAAGTAG

Protein sequence

>MsG0180004481.01.T01

MQQGGGSETEVTWEDQQNINKFGRLNNRLHELHDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVLLMCLRMK*