Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048899.01.T01 | XP_013458718.1 | 97.468 | 237 | 6 | 0 | 1 | 237 | 1 | 237 | 6.50E-167 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048899.01.T01 | Q9SY73 | 71.179 | 229 | 62 | 3 | 9 | 237 | 18 | 242 | 6.21E-117 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048899.01.T01 | A0A072V3L6 | 97.468 | 237 | 6 | 0 | 1 | 237 | 1 | 237 | 3.10e-167 | 470 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0080048899.01 | MsG0380015357.01 | PPI |
| MsG0080048899.01 | MsG0780041397.01 | PPI |
| MsG0080048899.01 | MsG0380015359.01 | PPI |
| MsG0080048899.01 | MsG0680032061.01 | PPI |
| MsG0080048899.01 | MsG0780041253.01 | PPI |
| MsG0080048899.01 | MsG0780039355.01 | PPI |
| MsG0080048899.01 | MsG0180003727.01 | PPI |
| MsG0080048899.01 | MsG0180002505.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048899.01.T01 | MTR_4g134660 | 97.468 | 237 | 6 | 0 | 1 | 237 | 1 | 237 | 7.87e-171 | 470 |
| MsG0080048899.01.T01 | MTR_4g066050 | 79.412 | 238 | 45 | 3 | 3 | 237 | 21 | 257 | 3.12e-134 | 378 |
| MsG0080048899.01.T01 | MTR_4g070490 | 71.849 | 238 | 63 | 3 | 3 | 237 | 21 | 257 | 5.30e-119 | 340 |
| MsG0080048899.01.T01 | MTR_4g070500 | 60.684 | 234 | 53 | 2 | 4 | 237 | 22 | 216 | 1.60e-92 | 271 |
| MsG0080048899.01.T01 | MTR_3g085740 | 32.984 | 191 | 122 | 5 | 11 | 199 | 80 | 266 | 8.58e-19 | 84.0 |
| MsG0080048899.01.T01 | MTR_3g068085 | 31.953 | 169 | 112 | 2 | 10 | 178 | 19 | 184 | 4.48e-15 | 72.8 |
| MsG0080048899.01.T01 | MTR_7g094510 | 29.756 | 205 | 123 | 6 | 6 | 198 | 6 | 201 | 6.53e-15 | 72.4 |
| MsG0080048899.01.T01 | MTR_7g080410 | 30.159 | 189 | 122 | 5 | 13 | 195 | 45 | 229 | 6.87e-15 | 72.8 |
| MsG0080048899.01.T01 | MTR_7g080410 | 30.159 | 189 | 122 | 5 | 13 | 195 | 45 | 229 | 9.39e-15 | 72.4 |
| MsG0080048899.01.T01 | MTR_7g071680 | 30.348 | 201 | 126 | 7 | 4 | 198 | 27 | 219 | 2.02e-14 | 71.6 |
| MsG0080048899.01.T01 | MTR_4g131740 | 27.979 | 193 | 127 | 4 | 9 | 193 | 43 | 231 | 2.24e-14 | 71.2 |
| MsG0080048899.01.T01 | MTR_8g044240 | 31.658 | 199 | 124 | 8 | 11 | 200 | 74 | 269 | 6.63e-14 | 70.5 |
| MsG0080048899.01.T01 | MTR_7g063320 | 29.016 | 193 | 133 | 3 | 9 | 200 | 18 | 207 | 8.17e-14 | 69.3 |
| MsG0080048899.01.T01 | MTR_7g063330 | 29.167 | 192 | 132 | 3 | 10 | 200 | 19 | 207 | 2.35e-13 | 68.2 |
| MsG0080048899.01.T01 | MTR_3g068070 | 30.769 | 169 | 114 | 2 | 10 | 178 | 19 | 184 | 3.07e-13 | 67.8 |
| MsG0080048899.01.T01 | MTR_4g097510 | 30.729 | 192 | 118 | 7 | 11 | 197 | 7 | 188 | 1.80e-12 | 65.9 |
| MsG0080048899.01.T01 | MTR_4g058840 | 27.861 | 201 | 137 | 6 | 6 | 200 | 11 | 209 | 3.48e-12 | 64.7 |
| MsG0080048899.01.T01 | MTR_4g058820 | 27.861 | 201 | 137 | 6 | 6 | 200 | 11 | 209 | 3.48e-12 | 64.7 |
| MsG0080048899.01.T01 | MTR_4g052320 | 27.928 | 222 | 147 | 7 | 12 | 230 | 14 | 225 | 1.02e-11 | 63.5 |
| MsG0080048899.01.T01 | MTR_4g064887 | 28.272 | 191 | 133 | 3 | 10 | 199 | 19 | 206 | 1.36e-11 | 62.4 |
| MsG0080048899.01.T01 | MTR_1196s0010 | 30.457 | 197 | 116 | 8 | 8 | 196 | 276 | 459 | 1.93e-11 | 63.5 |
| MsG0080048899.01.T01 | MTR_4g058810 | 26.866 | 201 | 139 | 6 | 6 | 200 | 11 | 209 | 2.27e-11 | 62.4 |
| MsG0080048899.01.T01 | MTR_4g064887 | 28.272 | 191 | 133 | 3 | 10 | 199 | 19 | 206 | 2.34e-11 | 62.4 |
| MsG0080048899.01.T01 | MTR_6g023590 | 25.481 | 208 | 149 | 6 | 12 | 216 | 19 | 223 | 2.72e-11 | 62.0 |
| MsG0080048899.01.T01 | MTR_7g083870 | 29.907 | 214 | 130 | 7 | 1 | 210 | 30 | 227 | 3.03e-11 | 62.4 |
| MsG0080048899.01.T01 | MTR_4g064883 | 30.256 | 195 | 122 | 6 | 10 | 198 | 18 | 204 | 6.14e-11 | 60.5 |
| MsG0080048899.01.T01 | MTR_1g051165 | 27.228 | 202 | 136 | 5 | 6 | 197 | 14 | 214 | 9.13e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048899.01.T01 | AT1G10310 | 71.179 | 229 | 62 | 3 | 9 | 237 | 18 | 242 | 6.33e-118 | 336 |
| MsG0080048899.01.T01 | AT5G10050 | 30.252 | 238 | 144 | 10 | 11 | 237 | 10 | 236 | 1.23e-16 | 77.4 |
| MsG0080048899.01.T01 | AT1G63380 | 29.524 | 210 | 127 | 8 | 6 | 202 | 15 | 216 | 4.00e-16 | 75.9 |
| MsG0080048899.01.T01 | AT5G65205 | 31.220 | 205 | 118 | 8 | 1 | 197 | 1 | 190 | 4.16e-16 | 75.9 |
| MsG0080048899.01.T01 | AT1G63380 | 29.524 | 210 | 127 | 8 | 6 | 202 | 17 | 218 | 4.71e-16 | 75.9 |
| MsG0080048899.01.T01 | AT1G63380 | 29.524 | 210 | 127 | 8 | 6 | 202 | 19 | 220 | 4.82e-16 | 75.9 |
| MsG0080048899.01.T01 | AT1G63380 | 29.524 | 210 | 127 | 8 | 6 | 202 | 22 | 223 | 4.84e-16 | 75.9 |
| MsG0080048899.01.T01 | AT2G17845 | 30.198 | 202 | 128 | 5 | 6 | 197 | 47 | 245 | 1.05e-15 | 75.1 |
| MsG0080048899.01.T01 | AT1G62610 | 29.048 | 210 | 128 | 8 | 6 | 202 | 13 | 214 | 1.69e-15 | 74.3 |
| MsG0080048899.01.T01 | AT1G62610 | 29.048 | 210 | 128 | 8 | 6 | 202 | 14 | 215 | 1.85e-15 | 73.9 |
| MsG0080048899.01.T01 | AT1G62610 | 29.048 | 210 | 128 | 8 | 6 | 202 | 15 | 216 | 2.01e-15 | 73.9 |
| MsG0080048899.01.T01 | AT1G62610 | 29.048 | 210 | 128 | 8 | 6 | 202 | 19 | 220 | 2.47e-15 | 73.9 |
| MsG0080048899.01.T01 | AT5G18210 | 28.571 | 203 | 131 | 7 | 6 | 198 | 8 | 206 | 8.91e-15 | 72.0 |
| MsG0080048899.01.T01 | AT5G18210 | 28.571 | 203 | 131 | 7 | 6 | 198 | 8 | 206 | 1.20e-14 | 72.0 |
| MsG0080048899.01.T01 | AT3G55290 | 30.000 | 200 | 128 | 5 | 6 | 197 | 17 | 212 | 1.86e-14 | 71.2 |
| MsG0080048899.01.T01 | AT3G55290 | 30.000 | 200 | 128 | 5 | 6 | 197 | 18 | 213 | 2.04e-14 | 71.2 |
| MsG0080048899.01.T01 | AT3G55310 | 30.348 | 201 | 126 | 7 | 6 | 197 | 17 | 212 | 4.40e-14 | 70.5 |
| MsG0080048899.01.T01 | AT1G24360 | 28.646 | 192 | 131 | 5 | 11 | 200 | 79 | 266 | 1.41e-13 | 69.3 |
| MsG0080048899.01.T01 | AT3G51680 | 29.851 | 201 | 133 | 5 | 4 | 198 | 30 | 228 | 5.38e-13 | 67.4 |
| MsG0080048899.01.T01 | AT5G19200 | 29.730 | 185 | 121 | 6 | 9 | 190 | 38 | 216 | 1.29e-12 | 66.6 |
| MsG0080048899.01.T01 | AT3G46170 | 29.648 | 199 | 130 | 6 | 6 | 197 | 26 | 221 | 1.86e-12 | 65.9 |
| MsG0080048899.01.T01 | AT1G07440 | 27.179 | 195 | 138 | 3 | 9 | 202 | 15 | 206 | 1.89e-12 | 65.5 |
| MsG0080048899.01.T01 | AT5G04900 | 29.293 | 198 | 129 | 7 | 11 | 200 | 82 | 276 | 6.45e-12 | 64.7 |
| MsG0080048899.01.T01 | AT3G26760 | 28.713 | 202 | 135 | 5 | 4 | 202 | 34 | 229 | 8.38e-12 | 63.9 |
| MsG0080048899.01.T01 | AT5G50690 | 31.100 | 209 | 116 | 9 | 9 | 202 | 48 | 243 | 1.17e-11 | 63.2 |
| MsG0080048899.01.T01 | AT5G50590 | 31.100 | 209 | 116 | 9 | 9 | 202 | 48 | 243 | 1.17e-11 | 63.2 |
| MsG0080048899.01.T01 | AT3G47360 | 27.411 | 197 | 134 | 5 | 4 | 197 | 43 | 233 | 1.80e-11 | 63.2 |
| MsG0080048899.01.T01 | AT2G29150 | 28.205 | 195 | 133 | 4 | 10 | 202 | 20 | 209 | 3.47e-11 | 62.0 |
| MsG0080048899.01.T01 | AT2G29350 | 31.034 | 174 | 115 | 3 | 6 | 178 | 15 | 184 | 3.58e-11 | 61.2 |
| MsG0080048899.01.T01 | AT5G06060 | 29.545 | 176 | 115 | 4 | 6 | 178 | 9 | 178 | 4.24e-11 | 61.6 |
| MsG0080048899.01.T01 | AT2G29350 | 31.034 | 174 | 115 | 3 | 6 | 178 | 15 | 184 | 4.25e-11 | 61.6 |
| MsG0080048899.01.T01 | AT5G50600 | 29.592 | 196 | 121 | 7 | 9 | 197 | 48 | 233 | 4.87e-11 | 62.0 |
| MsG0080048899.01.T01 | AT5G50700 | 29.592 | 196 | 121 | 7 | 9 | 197 | 48 | 233 | 4.87e-11 | 62.0 |
| MsG0080048899.01.T01 | AT2G29260 | 28.421 | 190 | 132 | 3 | 10 | 198 | 72 | 258 | 5.58e-11 | 61.6 |
Find 71 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTGTTGTTCTTGTTAA+TGG | 0.155577 | contig523end:-8291 | None:intergenic |
| GAAGAGATGATTATGATTAT+TGG | 0.247683 | contig523end:-8165 | None:intergenic |
| GACATGCTTGCTTCTTGCTT+TGG | 0.296337 | contig523end:+8590 | MsG0080048899.01.T01:CDS |
| AGTTAACTTGTCTTCTGGTT+GGG | 0.316946 | contig523end:+8433 | MsG0080048899.01.T01:CDS |
| AAGAGATGATTATGATTATT+GGG | 0.323077 | contig523end:-8164 | None:intergenic |
| ATTATAGTTAACTTGTCTTC+TGG | 0.326492 | contig523end:+8428 | MsG0080048899.01.T01:CDS |
| CTCCTTACTGTGCATCCAAA+TGG | 0.350241 | contig523end:+8480 | MsG0080048899.01.T01:CDS |
| ACAGATGGCTCGCACTGTTA+TGG | 0.356017 | contig523end:+8223 | MsG0080048899.01.T01:CDS |
| AATCGAGGTCACACCATTAT+AGG | 0.357867 | contig523end:+8092 | MsG0080048899.01.T01:CDS |
| TCTTCTGGTTGGGGAAGATC+AGG | 0.385658 | contig523end:+8443 | MsG0080048899.01.T01:CDS |
| TCCCTCCCAAGAGTTTGATT+TGG | 0.389305 | contig523end:+8322 | MsG0080048899.01.T01:CDS |
| GAGTCCTTCAATAGCCCATT+TGG | 0.398492 | contig523end:-8495 | None:intergenic |
| TAGGGCTCTTGCTATTGAAT+TGG | 0.402272 | contig523end:+8067 | MsG0080048899.01.T01:CDS |
| CGGAATGGGTGGGAAGGGAA+TGG | 0.403700 | contig523end:+8001 | None:intergenic |
| AATAGAAGTGTGTTGATTAC+TGG | 0.408672 | contig523end:+8026 | MsG0080048899.01.T01:CDS |
| AATCTTACTCCAGCAGATAA+TGG | 0.413046 | contig523end:+8755 | MsG0080048899.01.T01:CDS |
| AGCACGAGAACAACCTATAA+TGG | 0.423172 | contig523end:-8105 | None:intergenic |
| ACTGGTGTTAGCAAAGGAAT+TGG | 0.432533 | contig523end:+8044 | MsG0080048899.01.T01:CDS |
| GGAATGGGTGGGAAGGGAAT+GGG | 0.435982 | contig523end:+8002 | None:intergenic |
| CCATCACCAAATCAAACTCT+TGG | 0.438227 | contig523end:-8328 | None:intergenic |
| TTTATCAATCCCCTCAATCA+TGG | 0.447887 | contig523end:+8627 | MsG0080048899.01.T01:CDS |
| TATAGGTTGTTCTCGTGCTC+AGG | 0.451147 | contig523end:+8109 | MsG0080048899.01.T01:CDS |
| GCTGTTGTCGCACTCAATCC+TGG | 0.475014 | contig523end:+8554 | MsG0080048899.01.T01:CDS |
| GTTAACTTGTCTTCTGGTTG+GGG | 0.475108 | contig523end:+8434 | MsG0080048899.01.T01:CDS |
| TAGTTAACTTGTCTTCTGGT+TGG | 0.476654 | contig523end:+8432 | MsG0080048899.01.T01:CDS |
| GGAGTCGGAATGGGTGGGAA+GGG | 0.480505 | contig523end:+7996 | None:intergenic |
| TCCTTACTGTGCATCCAAAT+GGG | 0.481610 | contig523end:+8481 | MsG0080048899.01.T01:CDS |
| AGGAGTCGGAATGGGTGGGA+AGG | 0.485986 | contig523end:+7995 | None:intergenic |
| GTGTTAGCAAAGGAATTGGT+AGG | 0.489002 | contig523end:+8048 | MsG0080048899.01.T01:CDS |
| CATCACCAAATCAAACTCTT+GGG | 0.493519 | contig523end:-8327 | None:intergenic |
| GCATCCAAATGGGCTATTGA+AGG | 0.497887 | contig523end:+8491 | MsG0080048899.01.T01:CDS |
| CCAAGAGTTTGATTTGGTGA+TGG | 0.507185 | contig523end:+8328 | MsG0080048899.01.T01:CDS |
| AGAGAAGCACCATTATCTGC+TGG | 0.512127 | contig523end:-8764 | None:intergenic |
| GTGATGGATACAAACTTGAA+AGG | 0.521934 | contig523end:+8344 | MsG0080048899.01.T01:CDS |
| AACAAACAAACCATGATTGA+GGG | 0.523875 | contig523end:-8637 | None:intergenic |
| TAACAAACAAACCATGATTG+AGG | 0.525432 | contig523end:-8638 | None:intergenic |
| GCCCATTTGGATGCACAGTA+AGG | 0.529397 | contig523end:-8482 | None:intergenic |
| CTCACAGATGAGACTTCAAA+CGG | 0.545400 | contig523end:-8789 | None:intergenic |
| TGGAGCTGACGTCGACATTG+AGG | 0.545855 | contig523end:-8187 | None:intergenic |
| TTCCATAATCAGGGCTCTCA+AGG | 0.550794 | contig523end:+8715 | MsG0080048899.01.T01:intron |
| TAAAGAGTTACCACAAGGAA+TGG | 0.552214 | contig523end:+8532 | MsG0080048899.01.T01:CDS |
| CAACGACAGCGTTCAACAGA+TGG | 0.559184 | contig523end:+8208 | MsG0080048899.01.T01:CDS |
| GCGCTGTTCACAATAACATC+AGG | 0.559509 | contig523end:-8263 | None:intergenic |
| ATGTCAGTGTTGATGACACC+AGG | 0.567373 | contig523end:-8572 | None:intergenic |
| CATCTGTTGAACGCTGTCGT+TGG | 0.569321 | contig523end:-8207 | None:intergenic |
| TTAACAAGAACAACAAGATG+TGG | 0.570016 | contig523end:+8294 | MsG0080048899.01.T01:CDS |
| AAAAGAGGAGTCGGAATGGG+TGG | 0.574723 | contig523end:+7990 | None:intergenic |
| AAAGAGGAGTCGGAATGGGT+GGG | 0.595632 | contig523end:+7991 | None:intergenic |
| CACTGTTATGGAAACGAAGG+GGG | 0.596170 | contig523end:+8235 | MsG0080048899.01.T01:CDS |
| ACCAAATCAAACTCTTGGGA+GGG | 0.599420 | contig523end:-8323 | None:intergenic |
| GCTATTGAATTGGCGAATCG+AGG | 0.601300 | contig523end:+8077 | MsG0080048899.01.T01:CDS |
| CTCATGATCAACAACAACAA+TGG | 0.602640 | contig523end:+8398 | MsG0080048899.01.T01:CDS |
| GATGTTATTGTGAACAGCGC+AGG | 0.602911 | contig523end:+8266 | MsG0080048899.01.T01:CDS |
| TTGTTGTTGTTGATCATGAG+AGG | 0.603072 | contig523end:-8395 | None:intergenic |
| CACCAAATCAAACTCTTGGG+AGG | 0.606575 | contig523end:-8324 | None:intergenic |
| TGTTGTTGTTGATCATGAGA+GGG | 0.610244 | contig523end:-8394 | None:intergenic |
| CGCACTGTTATGGAAACGAA+GGG | 0.616633 | contig523end:+8233 | MsG0080048899.01.T01:CDS |
| ATCAACAACAACAATGGAGA+AGG | 0.620158 | contig523end:+8404 | MsG0080048899.01.T01:CDS |
| TGGAGTAAGATTGAGAATCA+TGG | 0.623215 | contig523end:-8744 | None:intergenic |
| CTGTTCACAATAACATCAGG+TGG | 0.624734 | contig523end:-8260 | None:intergenic |
| TTGATTACTGGTGTTAGCAA+AGG | 0.625224 | contig523end:+8038 | MsG0080048899.01.T01:CDS |
| TCGCACTGTTATGGAAACGA+AGG | 0.628854 | contig523end:+8232 | MsG0080048899.01.T01:CDS |
| GATGAAATGTCTCAACACAT+TGG | 0.632609 | contig523end:-8372 | None:intergenic |
| TAACAAGAACAACAAGATGT+GGG | 0.638628 | contig523end:+8295 | MsG0080048899.01.T01:CDS |
| TGTTAGCAAAGGAATTGGTA+GGG | 0.642718 | contig523end:+8049 | MsG0080048899.01.T01:CDS |
| ACAAACAAACCATGATTGAG+GGG | 0.655381 | contig523end:-8636 | None:intergenic |
| GCGACAACAGCCATTCCTTG+TGG | 0.658566 | contig523end:-8542 | None:intergenic |
| GCACTGTTATGGAAACGAAG+GGG | 0.685289 | contig523end:+8234 | MsG0080048899.01.T01:CDS |
| ACTGTTATGGAAACGAAGGG+GGG | 0.707582 | contig523end:+8236 | MsG0080048899.01.T01:CDS |
| GTAGCTAAAGAGTTACCACA+AGG | 0.726588 | contig523end:+8527 | MsG0080048899.01.T01:CDS |
| AGTAAGATTGAGAATCATGG+TGG | 0.814994 | contig523end:-8741 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATTCCATAATCA+GGG | + | contig523end:8706-8725 | MsG0080048899.01.T01:intron | 15.0% |
| !! | AAGAGATGATTATGATTATT+GGG | - | contig523end:8167-8186 | None:intergenic | 20.0% |
| !! | CTAATAATAATTCCATAATC+AGG | + | contig523end:8705-8724 | MsG0080048899.01.T01:intron | 20.0% |
| ! | GAAGAGATGATTATGATTAT+TGG | - | contig523end:8168-8187 | None:intergenic | 25.0% |
| ! | GAATGAAAGAATAGTAAACA+AGG | - | contig523end:8667-8686 | None:intergenic | 25.0% |
| !!! | ATTATAGTTAACTTGTCTTC+TGG | + | contig523end:8428-8447 | MsG0080048899.01.T01:CDS | 25.0% |
| AACAAACAAACCATGATTGA+GGG | - | contig523end:8640-8659 | None:intergenic | 30.0% | |
| TAACAAACAAACCATGATTG+AGG | - | contig523end:8641-8660 | None:intergenic | 30.0% | |
| TAACAAGAACAACAAGATGT+GGG | + | contig523end:8295-8314 | MsG0080048899.01.T01:CDS | 30.0% | |
| TTAACAAGAACAACAAGATG+TGG | + | contig523end:8294-8313 | MsG0080048899.01.T01:CDS | 30.0% | |
| !! | AATAGAAGTGTGTTGATTAC+TGG | + | contig523end:8026-8045 | MsG0080048899.01.T01:CDS | 30.0% |
| !! | CATCTTGTTGTTCTTGTTAA+TGG | - | contig523end:8294-8313 | None:intergenic | 30.0% |
| AATCTTACTCCAGCAGATAA+TGG | + | contig523end:8755-8774 | MsG0080048899.01.T01:CDS | 35.0% | |
| ACAAACAAACCATGATTGAG+GGG | - | contig523end:8639-8658 | None:intergenic | 35.0% | |
| AGTAAGATTGAGAATCATGG+TGG | - | contig523end:8744-8763 | None:intergenic | 35.0% | |
| ATCAACAACAACAATGGAGA+AGG | + | contig523end:8404-8423 | MsG0080048899.01.T01:CDS | 35.0% | |
| CATCACCAAATCAAACTCTT+GGG | - | contig523end:8330-8349 | None:intergenic | 35.0% | |
| CTCATGATCAACAACAACAA+TGG | + | contig523end:8398-8417 | MsG0080048899.01.T01:CDS | 35.0% | |
| GATGAAATGTCTCAACACAT+TGG | - | contig523end:8375-8394 | None:intergenic | 35.0% | |
| TAAAGAGTTACCACAAGGAA+TGG | + | contig523end:8532-8551 | MsG0080048899.01.T01:CDS | 35.0% | |
| TGGAGTAAGATTGAGAATCA+TGG | - | contig523end:8747-8766 | None:intergenic | 35.0% | |
| TGTTAGCAAAGGAATTGGTA+GGG | + | contig523end:8049-8068 | MsG0080048899.01.T01:CDS | 35.0% | |
| TTTATCAATCCCCTCAATCA+TGG | + | contig523end:8627-8646 | MsG0080048899.01.T01:CDS | 35.0% | |
| ! | TGTTGTTGTTGATCATGAGA+GGG | - | contig523end:8397-8416 | None:intergenic | 35.0% |
| ! | TTGATTACTGGTGTTAGCAA+AGG | + | contig523end:8038-8057 | MsG0080048899.01.T01:CDS | 35.0% |
| ! | TTGTTGTTGTTGATCATGAG+AGG | - | contig523end:8398-8417 | None:intergenic | 35.0% |
| !! | AGTTAACTTGTCTTCTGGTT+GGG | + | contig523end:8433-8452 | MsG0080048899.01.T01:CDS | 35.0% |
| !! | GTGATGGATACAAACTTGAA+AGG | + | contig523end:8344-8363 | MsG0080048899.01.T01:CDS | 35.0% |
| !! | TAGTTAACTTGTCTTCTGGT+TGG | + | contig523end:8432-8451 | MsG0080048899.01.T01:CDS | 35.0% |
| AATCGAGGTCACACCATTAT+AGG | + | contig523end:8092-8111 | MsG0080048899.01.T01:CDS | 40.0% | |
| ACCAAATCAAACTCTTGGGA+GGG | - | contig523end:8326-8345 | None:intergenic | 40.0% | |
| AGCACGAGAACAACCTATAA+TGG | - | contig523end:8108-8127 | None:intergenic | 40.0% | |
| CCATCACCAAATCAAACTCT+TGG | - | contig523end:8331-8350 | None:intergenic | 40.0% | |
| CTGTTCACAATAACATCAGG+TGG | - | contig523end:8263-8282 | None:intergenic | 40.0% | |
| GTAGCTAAAGAGTTACCACA+AGG | + | contig523end:8527-8546 | MsG0080048899.01.T01:CDS | 40.0% | |
| GTGTTAGCAAAGGAATTGGT+AGG | + | contig523end:8048-8067 | MsG0080048899.01.T01:CDS | 40.0% | |
| TCCTTACTGTGCATCCAAAT+GGG | + | contig523end:8481-8500 | MsG0080048899.01.T01:CDS | 40.0% | |
| ! | ACTGGTGTTAGCAAAGGAAT+TGG | + | contig523end:8044-8063 | MsG0080048899.01.T01:CDS | 40.0% |
| !! | CCAAGAGTTTGATTTGGTGA+TGG | + | contig523end:8328-8347 | MsG0080048899.01.T01:CDS | 40.0% |
| !! | GTTAACTTGTCTTCTGGTTG+GGG | + | contig523end:8434-8453 | MsG0080048899.01.T01:CDS | 40.0% |
| !! | TAGGGCTCTTGCTATTGAAT+TGG | + | contig523end:8067-8086 | MsG0080048899.01.T01:CDS | 40.0% |
| ACTGTTATGGAAACGAAGGG+GGG | + | contig523end:8236-8255 | MsG0080048899.01.T01:CDS | 45.0% | |
| CACCAAATCAAACTCTTGGG+AGG | - | contig523end:8327-8346 | None:intergenic | 45.0% | |
| CACTGTTATGGAAACGAAGG+GGG | + | contig523end:8235-8254 | MsG0080048899.01.T01:CDS | 45.0% | |
| CGCACTGTTATGGAAACGAA+GGG | + | contig523end:8233-8252 | MsG0080048899.01.T01:CDS | 45.0% | |
| CTCCTTACTGTGCATCCAAA+TGG | + | contig523end:8480-8499 | MsG0080048899.01.T01:CDS | 45.0% | |
| GACATGCTTGCTTCTTGCTT+TGG | + | contig523end:8590-8609 | MsG0080048899.01.T01:CDS | 45.0% | |
| GAGTCCTTCAATAGCCCATT+TGG | - | contig523end:8498-8517 | None:intergenic | 45.0% | |
| GATGTTATTGTGAACAGCGC+AGG | + | contig523end:8266-8285 | MsG0080048899.01.T01:CDS | 45.0% | |
| GCACTGTTATGGAAACGAAG+GGG | + | contig523end:8234-8253 | MsG0080048899.01.T01:CDS | 45.0% | |
| GCGCTGTTCACAATAACATC+AGG | - | contig523end:8266-8285 | None:intergenic | 45.0% | |
| GCTATTGAATTGGCGAATCG+AGG | + | contig523end:8077-8096 | MsG0080048899.01.T01:CDS | 45.0% | |
| TATAGGTTGTTCTCGTGCTC+AGG | + | contig523end:8109-8128 | MsG0080048899.01.T01:CDS | 45.0% | |
| TCCCTCCCAAGAGTTTGATT+TGG | + | contig523end:8322-8341 | MsG0080048899.01.T01:CDS | 45.0% | |
| TCGCACTGTTATGGAAACGA+AGG | + | contig523end:8232-8251 | MsG0080048899.01.T01:CDS | 45.0% | |
| TTCCATAATCAGGGCTCTCA+AGG | + | contig523end:8715-8734 | MsG0080048899.01.T01:intron | 45.0% | |
| !! | AGAGAAGCACCATTATCTGC+TGG | - | contig523end:8767-8786 | None:intergenic | 45.0% |
| !! | ATGTCAGTGTTGATGACACC+AGG | - | contig523end:8575-8594 | None:intergenic | 45.0% |
| !! | GCATCCAAATGGGCTATTGA+AGG | + | contig523end:8491-8510 | MsG0080048899.01.T01:CDS | 45.0% |
| ACAGATGGCTCGCACTGTTA+TGG | + | contig523end:8223-8242 | MsG0080048899.01.T01:CDS | 50.0% | |
| CAACGACAGCGTTCAACAGA+TGG | + | contig523end:8208-8227 | MsG0080048899.01.T01:CDS | 50.0% | |
| CATCTGTTGAACGCTGTCGT+TGG | - | contig523end:8210-8229 | None:intergenic | 50.0% | |
| GCCCATTTGGATGCACAGTA+AGG | - | contig523end:8485-8504 | None:intergenic | 50.0% | |
| TGCCTTGAGAGCCCTGATTA+TGG | - | contig523end:8720-8739 | None:intergenic | 50.0% | |
| ! | TCTTCTGGTTGGGGAAGATC+AGG | + | contig523end:8443-8462 | MsG0080048899.01.T01:CDS | 50.0% |
| GCGACAACAGCCATTCCTTG+TGG | - | contig523end:8545-8564 | None:intergenic | 55.0% | |
| GCTGTTGTCGCACTCAATCC+TGG | + | contig523end:8554-8573 | MsG0080048899.01.T01:CDS | 55.0% | |
| TGGAGCTGACGTCGACATTG+AGG | - | contig523end:8190-8209 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig523end | gene | 8005 | 8796 | 8005 | ID=MsG0080048899.01;Name=MsG0080048899.01 |
| contig523end | mRNA | 8005 | 8796 | 8005 | ID=MsG0080048899.01.T01;Parent=MsG0080048899.01;Name=MsG0080048899.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|237 |
| contig523end | exon | 8005 | 8648 | 8005 | ID=MsG0080048899.01.T01:exon:1948;Parent=MsG0080048899.01.T01 |
| contig523end | exon | 8727 | 8796 | 8727 | ID=MsG0080048899.01.T01:exon:1949;Parent=MsG0080048899.01.T01 |
| contig523end | CDS | 8005 | 8648 | 8005 | ID=MsG0080048899.01.T01:cds;Parent=MsG0080048899.01.T01 |
| contig523end | CDS | 8727 | 8796 | 8727 | ID=MsG0080048899.01.T01:cds;Parent=MsG0080048899.01.T01 |
| Gene Sequence |
| Protein sequence |
